<86>Dec 26 07:16:34 userdel[566105]: delete user 'rooter' <86>Dec 26 07:16:34 userdel[566105]: removed group 'rooter' owned by 'rooter' <86>Dec 26 07:16:34 userdel[566105]: removed shadow group 'rooter' owned by 'rooter' <86>Dec 26 07:16:34 groupadd[566143]: group added to /etc/group: name=rooter, GID=945 <86>Dec 26 07:16:34 groupadd[566143]: group added to /etc/gshadow: name=rooter <86>Dec 26 07:16:34 groupadd[566143]: new group: name=rooter, GID=945 <86>Dec 26 07:16:34 useradd[566170]: new user: name=rooter, UID=945, GID=945, home=/root, shell=/bin/bash <86>Dec 26 07:16:34 userdel[566231]: delete user 'builder' <86>Dec 26 07:16:34 userdel[566231]: removed group 'builder' owned by 'builder' <86>Dec 26 07:16:34 groupadd[566286]: group added to /etc/group: name=builder, GID=946 <86>Dec 26 07:16:34 groupadd[566286]: group added to /etc/gshadow: name=builder <86>Dec 26 07:16:34 groupadd[566286]: new group: name=builder, GID=946 <86>Dec 26 07:16:34 useradd[566309]: new user: name=builder, UID=946, GID=946, home=/usr/src, shell=/bin/bash <13>Dec 26 07:16:36 rpmi: xorg-proto-devel-2021.4-alt1 p9+272150.100.1.1 1621427342 installed <13>Dec 26 07:16:36 rpmi: libfftw3-common-3.3.8-alt1 sisyphus+226899.100.1.1 1554782385 installed <13>Dec 26 07:16:36 rpmi: libgomp1-8.4.1-alt0.p9.1 p9+247559.100.2.1 1585587756 installed <13>Dec 26 07:16:36 rpmi: libnl3-3.4.0-alt2 1507570084 installed <13>Dec 26 07:16:36 rpmi: libibverbs-30.0-alt3 p9+255465.100.1.1 1595874072 installed <13>Dec 26 07:16:36 rpmi: libXau-1.0.9-alt1 sisyphus+223149.200.2.1 1551268156 installed <13>Dec 26 07:16:36 rpmi: libICE-1.0.9-alt1 1409902719 installed <13>Dec 26 07:16:36 rpmi: libquadmath0-8.4.1-alt0.p9.1 p9+247559.100.2.1 1585587756 installed <13>Dec 26 07:16:36 rpmi: udev-rules-1:246.16-alt2 p9+287049.100.2.1 1634920961 installed <13>Dec 26 07:16:36 rpmi: libquadmath8-devel-8.4.1-alt0.p9.1 p9+247559.100.2.1 1585587756 installed <13>Dec 26 07:16:37 rpmi: libgfortran5-8.4.1-alt0.p9.1 p9+247559.100.2.1 1585587756 installed <13>Dec 26 07:16:37 rpmi: libSM-1.2.3-alt1 sisyphus+226734.100.2.1 1554586157 installed <13>Dec 26 07:16:37 rpmi: librdmacm-30.0-alt3 p9+255465.100.1.1 1595874072 installed <13>Dec 26 07:16:37 rpmi: libnuma-2.0.11-alt1 1450022595 installed <13>Dec 26 07:16:37 rpmi: libopenblas-0.3.9-alt2 p9+274919.40.2.1 1624305203 installed <13>Dec 26 07:16:37 rpmi: libibumad-30.0-alt3 p9+255465.100.1.1 1595874072 installed <13>Dec 26 07:16:37 rpmi: libmnl-1.0.4-alt2 sisyphus+220683.100.1.1 1549335455 installed <13>Dec 26 07:16:37 rpmi: libpng16-1.6.36-alt1 sisyphus+219478.100.1.1 1547633315 installed <13>Dec 26 07:16:37 rpmi: libicu65-1:6.5.1-alt2 p9+270410.100.1.1 1619007054 installed <13>Dec 26 07:16:37 rpmi: libgraphite2-1.3.13-alt2 sisyphus+226799.100.1.1 1554648233 installed <13>Dec 26 07:16:37 rpmi: libharfbuzz-2.6.2-alt1 p9+277458.500.1.1 1625577087 installed <13>Dec 26 07:16:37 rpmi: libfreetype-2.10.1-alt1.1.p9.1 p9+260179.200.3.1 1603971391 installed <13>Dec 26 07:16:37 rpmi: libexpat-2.2.10-alt1 p9+261554.100.1.1 1605103332 installed <13>Dec 26 07:16:37 rpmi: fontconfig-2.13.1-alt1 p9+247340.200.3.1 1583400482 installed Updating fonts cache: <29>Dec 26 07:16:38 fontconfig: Updating fonts cache: succeeded [ DONE ] <13>Dec 26 07:16:38 rpmi: liblz4-1:1.9.2-alt1 p9+238696.500.1.1 1570228072 installed <13>Dec 26 07:16:38 rpmi: libiptables-1.8.3-alt2 p9+238412.300.6.1 1570110065 installed <13>Dec 26 07:16:38 rpmi: libidn2-2.2.0-alt1 p9+229971.100.2.1 1558696275 installed <13>Dec 26 07:16:38 rpmi: libdevmapper-1.02.173-alt1 p9+259866.100.1.1 1602632323 installed <13>Dec 26 07:16:38 rpmi: msulogin-1.0-alt1 1366288481 installed <13>Dec 26 07:16:38 rpmi: mount-2.33.2-alt2 p9+254003.100.1.1 1593108026 installed <13>Dec 26 07:16:38 rpmi: sysvinit-2.88-alt5 1424350685 installed <13>Dec 26 07:16:38 rpmi: libharfbuzz-icu-2.6.2-alt1 p9+277458.500.1.1 1625577087 installed <13>Dec 26 07:16:38 rpmi: libgraphite2-devel-1.3.13-alt2 sisyphus+226799.100.1.1 1554648233 installed <13>Dec 26 07:16:38 rpmi: icu-utils-1:6.5.1-alt2 p9+270410.100.1.1 1619007054 installed <13>Dec 26 07:16:38 rpmi: libicu-devel-1:6.5.1-alt2 p9+270410.100.1.1 1619007054 installed <13>Dec 26 07:16:38 rpmi: libnetlink-5.3.0-alt1 p9+238696.600.1.1 1570228135 installed <13>Dec 26 07:16:38 rpmi: libibmad-30.0-alt3 p9+255465.100.1.1 1595874072 installed <13>Dec 26 07:16:38 rpmi: libibnetdisc-30.0-alt3 p9+255465.100.1.1 1595874072 installed <13>Dec 26 07:16:38 rpmi: libopenblas-devel-0.3.9-alt2 p9+274919.40.2.1 1624305203 installed <13>Dec 26 07:16:38 rpmi: libnuma-devel-2.0.11-alt1 1450022595 installed <13>Dec 26 07:16:38 rpmi: libfftw3q-3.3.8-alt1 sisyphus+226899.100.1.1 1554782385 installed <13>Dec 26 07:16:38 rpmi: libICE-devel-1.0.9-alt1 1409902719 installed <13>Dec 26 07:16:38 rpmi: libSM-devel-1.2.3-alt1 sisyphus+226734.100.2.1 1554586157 installed <13>Dec 26 07:16:38 rpmi: libXau-devel-1.0.9-alt1 sisyphus+223149.200.2.1 1551268156 installed <13>Dec 26 07:16:38 rpmi: xorg-printproto-devel-1.0.5-alt1 1303466042 installed <13>Dec 26 07:16:38 rpmi: libfftw3-3.3.8-alt1 sisyphus+226899.100.1.1 1554782385 installed <13>Dec 26 07:16:38 rpmi: libfftw3f-3.3.8-alt1 sisyphus+226899.100.1.1 1554782385 installed <13>Dec 26 07:16:38 rpmi: libfftw3l-3.3.8-alt1 sisyphus+226899.100.1.1 1554782385 installed <13>Dec 26 07:16:38 rpmi: pciids-20211220-alt1 p9+292481.100.1.1 1640194014 installed <13>Dec 26 07:16:39 rpmi: tcsh-6.20.00-alt2 1503603377 installed <13>Dec 26 07:16:39 rpmi: rpm-macros-mpi-selector-1.0.3-alt3 1504498675 installed <13>Dec 26 07:16:39 rpmi: mpi-selector-1.0.3-alt3 1504498675 installed <13>Dec 26 07:16:39 rpmi: openmpi-2.0.1-alt7 sisyphus+223725.100.1.1 1551851518 installed <13>Dec 26 07:16:39 rpmi: libpci-3.7.0-alt1 p9+253477.100.2.1 1592498098 installed <13>Dec 26 07:16:39 rpmi: pciutils-3.7.0-alt1 p9+253477.100.2.1 1592498098 installed <13>Dec 26 07:16:39 rpmi: libxblas-1.0.248-alt1.3 sisyphus+229150.100.1.1 1557388758 installed <13>Dec 26 07:16:39 rpmi: liblapack-1:3.8.0-alt3 sisyphus+221521.100.1.1 1550134909 installed <13>Dec 26 07:16:39 rpmi: libjpeg-2:2.0.2-alt1 sisyphus+226996.100.1.1 1554902884 installed <13>Dec 26 07:16:39 rpmi: libgsl-2.5-alt1 sisyphus.212796.100 1536590939 installed <13>Dec 26 07:16:39 rpmi: libX11-locales-3:1.7.2-alt1 p9+273972.100.2.1 1623924318 installed <13>Dec 26 07:16:39 rpmi: libXdmcp-1.1.3-alt1 sisyphus+225206.600.1.2 1552949347 installed <13>Dec 26 07:16:39 rpmi: libxcb-1.13.1-alt1 sisyphus+226527.100.2.2 1554593799 installed <13>Dec 26 07:16:39 rpmi: libX11-3:1.7.2-alt1 p9+273972.100.2.1 1623924318 installed <13>Dec 26 07:16:39 rpmi: libXext-1.3.4-alt1 sisyphus+225206.700.1.2 1552949422 installed <13>Dec 26 07:16:39 rpmi: libXt-1.1.4-alt1 1369984716 installed <13>Dec 26 07:16:39 rpmi: libXrender-0.9.10-alt1 p9+261891.200.2.1 1606149106 installed <13>Dec 26 07:16:39 rpmi: libXft-2.3.3-alt1 sisyphus+225206.1000.3.2 1552987714 installed <13>Dec 26 07:16:39 rpmi: libXmu-1.1.3-alt1 sisyphus+225206.1200.1.2 1552949629 installed <13>Dec 26 07:16:39 rpmi: libXp-1.0.2-alt1 1370421423 installed <13>Dec 26 07:16:39 rpmi: libopenmotif4-2.3.8-alt1 sisyphus+222959.100.1.1 1551299712 installed <13>Dec 26 07:16:40 rpmi: libxcb-devel-1.13.1-alt1 sisyphus+226527.100.2.2 1554593799 installed <13>Dec 26 07:16:40 rpmi: libX11-devel-3:1.7.2-alt1 p9+273972.100.2.1 1623924318 installed <13>Dec 26 07:16:40 rpmi: libXrender-devel-0.9.10-alt1 p9+261891.200.2.1 1606149106 installed <13>Dec 26 07:16:40 rpmi: libXt-devel-1.1.4-alt1 1369984716 installed <13>Dec 26 07:16:40 rpmi: libatm-2.5.1-alt6 p9+263604.300.3.1 1608575724 installed <13>Dec 26 07:16:40 rpmi: chrooted-0.3.11-alt1 p9+249340.100.2.1 1586263298 installed <13>Dec 26 07:16:40 rpmi: chrooted-resolv-0.3.1-alt2 1176155257 installed <13>Dec 26 07:16:40 rpmi: gcc-fortran-common-1.4.23-alt1 sisyphus+221902.2500.4.1 1550596716 installed <13>Dec 26 07:16:40 rpmi: libgfortran8-devel-8.4.1-alt0.p9.1 p9+247559.100.2.1 1585587756 installed <13>Dec 26 07:16:41 rpmi: gcc8-fortran-8.4.1-alt0.p9.1 p9+247559.100.2.1 1585587756 installed <13>Dec 26 07:16:41 rpmi: gcc-fortran-8-alt2 p9+246536.100.3.1 1582643803 installed <13>Dec 26 07:16:41 rpmi: gcc-c++-common-1.4.23-alt1 sisyphus+221902.2500.4.1 1550596716 installed <13>Dec 26 07:16:41 rpmi: libstdc++8-devel-8.4.1-alt0.p9.1 p9+247559.100.2.1 1585587756 installed <13>Dec 26 07:16:41 rpmi: gcc8-c++-8.4.1-alt0.p9.1 p9+247559.100.2.1 1585587756 installed <13>Dec 26 07:16:41 rpmi: gcc-c++-8-alt2 p9+246536.100.3.1 1582643803 installed <13>Dec 26 07:16:41 rpmi: libgdbm-1.8.3-alt10 1454943313 installed <13>Dec 26 07:16:41 rpmi: xml-utils-1:2.9.10-alt6 p9+266566.100.3.1 1614357016 installed <13>Dec 26 07:16:41 rpmi: rpm-build-gir-0.7.3-alt2 p9+234356.40.2.1 1562933848 installed <13>Dec 26 07:16:42 rpmi: udev-hwdb-1:246.16-alt2 p9+287049.100.2.1 1634920961 installed <13>Dec 26 07:16:42 rpmi: libpcre2-10.33-alt1.1 sisyphus+227856.100.1.2 1555786372 installed <13>Dec 26 07:16:42 rpmi: libjson-c4-0.13.1-alt2 p9+254507.100.1.1 1593876138 installed <13>Dec 26 07:16:42 rpmi: libargon2-20190702-alt1 p9+235535.100.1.1 1565051954 installed <13>Dec 26 07:16:42 rpmi: libgpg-error-1.36-alt1 p9+261942.140.4.1 1606237682 installed <13>Dec 26 07:16:42 rpmi: libgcrypt20-1.8.5-alt3 p9+261942.200.4.1 1606237844 installed <13>Dec 26 07:16:42 rpmi: libsystemd-1:246.16-alt2 p9+287049.100.2.1 1634920961 installed <13>Dec 26 07:16:42 rpmi: hwclock-1:2.33.2-alt2 p9+254003.100.1.1 1593108026 installed <13>Dec 26 07:16:42 rpmi: hashalot-0.3-alt1.qa1 1366323553 installed <13>Dec 26 07:16:42 rpmi: losetup-2.33.2-alt2 p9+254003.100.1.1 1593108026 installed <13>Dec 26 07:16:42 rpmi: lsblk-2.33.2-alt2 p9+254003.100.1.1 1593108026 installed <13>Dec 26 07:16:42 rpmi: libp11-kit-0.23.15-alt2 p9+254920.2400.19.1 1601385869 installed <13>Dec 26 07:16:42 rpmi: libtasn1-4.14-alt1 p9+235792.100.2.1 1565425233 installed <13>Dec 26 07:16:42 rpmi: rpm-macros-alternatives-0.5.1-alt1 sisyphus+226946.100.1.1 1554830426 installed <13>Dec 26 07:16:42 rpmi: alternatives-0.5.1-alt1 sisyphus+226946.100.1.1 1554830426 installed <13>Dec 26 07:16:42 rpmi: ca-certificates-2021.10.06-alt1 p9+289862.100.1.1 1637033643 installed <13>Dec 26 07:16:42 rpmi: ca-trust-0.1.2-alt1 p9+233349.100.1.1 1561655062 installed <13>Dec 26 07:16:42 rpmi: p11-kit-trust-0.23.15-alt2 p9+254920.2400.19.1 1601385869 installed <13>Dec 26 07:16:42 rpmi: libcrypto1.1-1.1.1l-alt1 p9+283690.100.2.1 1630572181 installed <13>Dec 26 07:16:42 rpmi: libkmod-26-alt1 sisyphus+226359.100.1.1 1554129988 installed <13>Dec 26 07:16:42 rpmi: kmod-26-alt1 sisyphus+226359.100.1.1 1554129988 installed <13>Dec 26 07:16:42 rpmi: libcryptsetup-2.3.3-alt1 p9+252585.100.1.1 1590914365 installed <13>Dec 26 07:16:42 rpmi: startup-0.9.9.10-alt1 p9+263519.100.1.1 1608121516 installed <13>Dec 26 07:16:42 rpmi: systemd-utils-1:246.16-alt2 p9+287049.100.2.1 1634920961 installed <13>Dec 26 07:16:42 rpmi: dmsetup-1.02.173-alt1 p9+259866.100.1.1 1602632323 installed <86>Dec 26 07:16:42 groupadd[628931]: group added to /etc/group: name=tape, GID=499 <86>Dec 26 07:16:42 groupadd[628931]: group added to /etc/gshadow: name=tape <86>Dec 26 07:16:42 groupadd[628931]: new group: name=tape, GID=499 <86>Dec 26 07:16:42 groupadd[628949]: group added to /etc/group: name=dialout, GID=498 <86>Dec 26 07:16:42 groupadd[628949]: group added to /etc/gshadow: name=dialout <86>Dec 26 07:16:42 groupadd[628949]: new group: name=dialout, GID=498 <86>Dec 26 07:16:42 groupadd[628968]: group added to /etc/group: name=input, GID=497 <86>Dec 26 07:16:42 groupadd[628968]: group added to /etc/gshadow: name=input <86>Dec 26 07:16:42 groupadd[628968]: new group: name=input, GID=497 <86>Dec 26 07:16:42 groupadd[628986]: group added to /etc/group: name=video, GID=496 <86>Dec 26 07:16:42 groupadd[628986]: group added to /etc/gshadow: name=video <86>Dec 26 07:16:42 groupadd[628986]: new group: name=video, GID=496 <86>Dec 26 07:16:42 groupadd[629012]: group added to /etc/group: name=render, GID=495 <86>Dec 26 07:16:42 groupadd[629012]: group added to /etc/gshadow: name=render <86>Dec 26 07:16:42 groupadd[629012]: new group: name=render, GID=495 <86>Dec 26 07:16:42 groupadd[629043]: group added to /etc/group: name=vmusers, GID=494 <86>Dec 26 07:16:42 groupadd[629043]: group added to /etc/gshadow: name=vmusers <86>Dec 26 07:16:42 groupadd[629043]: new group: name=vmusers, GID=494 <13>Dec 26 07:16:42 rpmi: udev-1:246.16-alt2 p9+287049.100.2.1 1634920961 installed <13>Dec 26 07:16:42 rpmi: libssl1.1-1.1.1l-alt1 p9+283690.100.2.1 1630572181 installed <13>Dec 26 07:16:42 rpmi: libpython3-3.7.11-alt1 p9+273501.10.37.1 1629720188 installed <13>Dec 26 07:16:42 rpmi: python3-3.7.11-alt1 p9+273501.10.37.1 1629720188 installed <13>Dec 26 07:16:43 rpmi: python3-base-3.7.11-alt1 p9+273501.10.37.1 1629720188 installed <13>Dec 26 07:16:43 rpmi: glib2-devel-2.60.7-alt1 p9+237353.100.2.2 1568372980 installed <13>Dec 26 07:16:43 rpmi: libharfbuzz-devel-2.6.2-alt1 p9+277458.500.1.1 1625577087 installed <13>Dec 26 07:16:43 rpmi: libfreetype-devel-2.10.1-alt1.1.p9.1 p9+260179.200.3.1 1603971391 installed <13>Dec 26 07:16:43 rpmi: fontconfig-devel-2.13.1-alt1 p9+247340.200.3.1 1583400482 installed <13>Dec 26 07:16:43 rpmi: libXft-devel-2.3.3-alt1 sisyphus+225206.1000.3.2 1552987714 installed <86>Dec 26 07:16:43 groupadd[635081]: group added to /etc/group: name=iputils, GID=493 <86>Dec 26 07:16:43 groupadd[635081]: group added to /etc/gshadow: name=iputils <86>Dec 26 07:16:43 groupadd[635081]: new group: name=iputils, GID=493 <86>Dec 26 07:16:43 useradd[635127]: new user: name=iputils, UID=499, GID=493, home=/dev/null, shell=/dev/null <86>Dec 26 07:16:43 groupadd[635157]: group added to /etc/group: name=netadmin, GID=492 <86>Dec 26 07:16:43 groupadd[635157]: group added to /etc/gshadow: name=netadmin <86>Dec 26 07:16:43 groupadd[635157]: new group: name=netadmin, GID=492 <13>Dec 26 07:16:43 rpmi: iputils-20190709-alt3 p9+281756.100.1.1 1628006690 installed sysctl: cannot stat /proc/sys/net/ipv4/ping_group_range: No such file or directory <13>Dec 26 07:16:43 rpmi: iproute2-5.3.0-alt1 p9+238696.600.1.1 1570228135 installed <13>Dec 26 07:16:43 rpmi: rdma-core-30.0-alt3 p9+255465.100.1.1 1595874072 installed <13>Dec 26 07:16:43 rpmi: ibacm-30.0-alt3 p9+255465.100.1.1 1595874072 installed <13>Dec 26 07:16:43 rpmi: rdma-core-devel-30.0-alt3 p9+255465.100.1.1 1595874072 installed <13>Dec 26 07:16:43 rpmi: openmpi-devel-2.0.1-alt7 sisyphus+223725.100.1.1 1551851518 installed <13>Dec 26 07:16:43 rpmi: libopenmotif-devel-2.3.8-alt1 sisyphus+222959.100.1.1 1551299712 installed <13>Dec 26 07:16:43 rpmi: libgsl-devel-2.5-alt1 sisyphus.212796.100 1536590939 installed <13>Dec 26 07:16:43 rpmi: liblapack-devel-1:3.8.0-alt3 sisyphus+221521.100.1.1 1550134909 installed <13>Dec 26 07:16:43 rpmi: libfftw3-devel-3.3.8-alt1 sisyphus+226899.100.1.1 1554782385 installed <13>Dec 26 07:16:43 rpmi: xorg-cf-files-1.0.6-alt1 1453137637 installed <13>Dec 26 07:16:43 rpmi: imake-1.0.7-alt3 1518797773 installed <13>Dec 26 07:16:43 rpmi: chrpath-0.16-alt1 1453066315 installed Building target platforms: x86_64 Building for target x86_64 Wrote: /usr/src/in/nosrpm/gromacs-4.0.7-alt8.nosrc.rpm (w1.gzdio) <13>Dec 26 07:16:45 rpmi: libtool_1.5-3:1.5.26-alt12 1533413564 installed Installing gromacs-4.0.7-alt8.src.rpm Building target platforms: x86_64 Building for target x86_64 Executing(%prep): /bin/sh -e /usr/src/tmp/rpm-tmp.83215 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + rm -rf gromacs-4.0.7 + echo 'Source #0 (gromacs-4.0.7.tar.gz):' Source #0 (gromacs-4.0.7.tar.gz): + /bin/gzip -dc /usr/src/RPM/SOURCES/gromacs-4.0.7.tar.gz + /bin/tar -xf - + cd gromacs-4.0.7 + /bin/chmod -c -Rf u+rwX,go-w . + echo 'Patch #0 (gromacs-4.0.3-alt-LIBS-LDADD.patch):' Patch #0 (gromacs-4.0.3-alt-LIBS-LDADD.patch): + /usr/bin/patch -p0 patching file configure.ac patching file src/tools/Makefile.am + sed -i 's|lib/openmpi|lib64/openmpi|' configure.ac ++ find ./ -name Makefile.am + sed -i 's|^\(AM_CPPFLAGS.*\)|\1 -g|' ./src/tools/Makefile.am ./src/ngmx/Makefile.am ./src/mdlib/Makefile.am ./src/kernel/Makefile.am ./src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/Makefile.am ./src/gmxlib/nonbonded/nb_kernel_x86_64_sse/Makefile.am ./src/gmxlib/nonbonded/nb_kernel_ppc_altivec/Makefile.am ./src/gmxlib/nonbonded/nb_kernel_ia64_single/Makefile.am ./src/gmxlib/nonbonded/nb_kernel_ia64_double/Makefile.am ./src/gmxlib/nonbonded/nb_kernel_ia32_sse2/Makefile.am ./src/gmxlib/nonbonded/nb_kernel_ia32_sse/Makefile.am ./src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/Makefile.am ./src/gmxlib/nonbonded/nb_kernel_bluegene/Makefile.am ./src/gmxlib/nonbonded/nb_kernel/Makefile.am ./src/gmxlib/nonbonded/Makefile.am ./src/gmxlib/gmx_lapack/Makefile.am ./src/gmxlib/gmx_blas/Makefile.am ./src/gmxlib/Makefile.am ./src/contrib/Makefile.am ./src/Makefile.am ./share/tutor/water/Makefile.am ./share/tutor/speptide/Makefile.am ./share/tutor/nmr2/Makefile.am ./share/tutor/nmr1/Makefile.am ./share/tutor/mixed/Makefile.am ./share/tutor/methanol/Makefile.am ./share/tutor/gmxdemo/Makefile.am ./share/tutor/Makefile.am ./share/top/Makefile.am ./share/template/Makefile.am ./share/html/online/Makefile.am ./share/html/images/Makefile.am ./share/html/Makefile.am ./share/Makefile.am ./scripts/Makefile.am ./man/man1/Makefile.am ./man/Makefile.am ./include/types/Makefile.am ./include/Makefile.am ./admin/Makefile.am ./Makefile.am + exit 0 Executing(%build): /bin/sh -e /usr/src/tmp/rpm-tmp.63040 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd gromacs-4.0.7 ++ mpi-selector --list ++ grep openmpi + mpi-selector --set openmpi + source /etc/profile.d/mpi-selector.sh ++ mpi_selector_dir=/var/lib/mpi-selector/data ++ mpi_selector_homefile=/usr/src/.mpi-selector ++ mpi_selector_sysfile=/etc/sysconfig/mpi-selector ++ mpi_selection= ++ test -f /usr/src/.mpi-selector +++ cat /usr/src/.mpi-selector ++ mpi_selection=openmpi ++ test openmpi '!=' '' -a -f /var/lib/mpi-selector/data/openmpi.sh ++ . /var/lib/mpi-selector/data/openmpi.sh +++ echo /usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games +++ grep -q /usr/lib64/openmpi/bin +++ PATH=/usr/lib64/openmpi/bin:/usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games +++ export PATH +++ echo +++ grep -q /usr/lib64/openmpi/lib +++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib +++ export LD_LIBRARY_PATH +++ echo +++ grep -q /usr/lib64/openmpi/man +++ MANPATH=/usr/lib64/openmpi/man: +++ export MANPATH + export 'OMPI_LDFLAGS=-Wl,--as-needed,-rpath,/usr/lib64/openmpi/lib -L/usr/lib64/openmpi/lib' + OMPI_LDFLAGS='-Wl,--as-needed,-rpath,/usr/lib64/openmpi/lib -L/usr/lib64/openmpi/lib' + sed -i 's|^runpath_var=LD_RUN_PATH|runpath_var=|g' acinclude.m4 + autoreconf -fisv autoreconf-default: Entering directory `.' autoreconf-default: configure.ac: not using Gettext autoreconf-default: running: aclocal --force configure.ac:419: warning: AC_CACHE_VAL(ac_o3, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_faltivec, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_maltivec, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_mabialtivec, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_fno_schedule_insns, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_m_cpu_7450, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_m_tune_970, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_m_cpu_powerpc, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_funroll_all_loops, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_guessed_cflags, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_guessed_fflags, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:507: ACX_CHECK_F77_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:455: warning: AC_CACHE_VAL(acx_float_format, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:164: ACX_FLOAT_FORMAT is expanded from... configure.ac:455: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from... acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from... acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from... acinclude.m4:6633: AC_LIBTOOL_PROG_LD_SHLIBS is expanded from... acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from... acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from... acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from... acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from... acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from... acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:5190: _LT_AC_LANG_F77_CONFIG is expanded from... acinclude.m4:5189: AC_LIBTOOL_LANG_F77_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:5190: _LT_AC_LANG_F77_CONFIG is expanded from... acinclude.m4:5189: AC_LIBTOOL_LANG_F77_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from... acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from... acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from... acinclude.m4:6633: AC_LIBTOOL_PROG_LD_SHLIBS is expanded from... acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from... acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level autoreconf-default: configure.ac: tracing configure.ac:419: warning: AC_CACHE_VAL(ac_o3, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_faltivec, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_maltivec, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_mabialtivec, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_fno_schedule_insns, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_m_cpu_7450, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_m_tune_970, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_m_cpu_powerpc, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_funroll_all_loops, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_guessed_cflags, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_guessed_fflags, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:507: ACX_CHECK_F77_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:455: warning: AC_CACHE_VAL(acx_float_format, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:164: ACX_FLOAT_FORMAT is expanded from... configure.ac:455: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from... acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from... acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from... acinclude.m4:6633: AC_LIBTOOL_PROG_LD_SHLIBS is expanded from... acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from... acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from... acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from... acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from... acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from... acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:5190: _LT_AC_LANG_F77_CONFIG is expanded from... acinclude.m4:5189: AC_LIBTOOL_LANG_F77_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:5190: _LT_AC_LANG_F77_CONFIG is expanded from... acinclude.m4:5189: AC_LIBTOOL_LANG_F77_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from... acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from... acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from... acinclude.m4:6633: AC_LIBTOOL_PROG_LD_SHLIBS is expanded from... acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from... acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level autoreconf-default: running: libtoolize --force You should update your `aclocal.m4' by running aclocal. Putting files in AC_CONFIG_AUX_DIR, `config'. autoreconf-default: configure.ac: not using Intltool autoreconf-default: configure.ac: not using gtk-doc configure.ac:419: warning: AC_CACHE_VAL(ac_o3, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_faltivec, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_maltivec, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_mabialtivec, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_fno_schedule_insns, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_m_cpu_7450, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_m_tune_970, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_m_cpu_powerpc, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_funroll_all_loops, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_guessed_cflags, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_guessed_fflags, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:507: ACX_CHECK_F77_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:455: warning: AC_CACHE_VAL(acx_float_format, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:164: ACX_FLOAT_FORMAT is expanded from... configure.ac:455: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from... acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from... acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from... acinclude.m4:6633: AC_LIBTOOL_PROG_LD_SHLIBS is expanded from... acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from... acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from... acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from... acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from... acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from... acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:5190: _LT_AC_LANG_F77_CONFIG is expanded from... acinclude.m4:5189: AC_LIBTOOL_LANG_F77_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:5190: _LT_AC_LANG_F77_CONFIG is expanded from... acinclude.m4:5189: AC_LIBTOOL_LANG_F77_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from... acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from... acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from... acinclude.m4:6633: AC_LIBTOOL_PROG_LD_SHLIBS is expanded from... acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from... acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level autoreconf-default: running: /usr/bin/autoconf-2.60 --force configure.ac:419: warning: AC_CACHE_VAL(ac_o3, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_faltivec, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_maltivec, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_mabialtivec, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_fno_schedule_insns, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_m_cpu_7450, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_m_tune_970, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_m_cpu_powerpc, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_funroll_all_loops, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_guessed_cflags, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_guessed_fflags, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:507: ACX_CHECK_F77_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:455: warning: AC_CACHE_VAL(acx_float_format, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:164: ACX_FLOAT_FORMAT is expanded from... configure.ac:455: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from... acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from... acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from... acinclude.m4:6633: AC_LIBTOOL_PROG_LD_SHLIBS is expanded from... acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from... acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from... acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from... acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from... acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from... acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:5190: _LT_AC_LANG_F77_CONFIG is expanded from... acinclude.m4:5189: AC_LIBTOOL_LANG_F77_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:5190: _LT_AC_LANG_F77_CONFIG is expanded from... acinclude.m4:5189: AC_LIBTOOL_LANG_F77_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from... acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from... acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from... acinclude.m4:6633: AC_LIBTOOL_PROG_LD_SHLIBS is expanded from... acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from... acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level autoreconf-default: running: /usr/bin/autoheader-2.60 --force configure.ac:419: warning: AC_CACHE_VAL(ac_o3, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_faltivec, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_maltivec, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_mabialtivec, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_fno_schedule_insns, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_m_cpu_7450, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_m_tune_970, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_m_cpu_powerpc, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_funroll_all_loops, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_guessed_cflags, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_guessed_fflags, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:507: ACX_CHECK_F77_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:455: warning: AC_CACHE_VAL(acx_float_format, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:164: ACX_FLOAT_FORMAT is expanded from... configure.ac:455: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from... acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from... acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from... acinclude.m4:6633: AC_LIBTOOL_PROG_LD_SHLIBS is expanded from... acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from... acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from... acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from... acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from... acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from... acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:5190: _LT_AC_LANG_F77_CONFIG is expanded from... acinclude.m4:5189: AC_LIBTOOL_LANG_F77_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:5190: _LT_AC_LANG_F77_CONFIG is expanded from... acinclude.m4:5189: AC_LIBTOOL_LANG_F77_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from... acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from... acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from... acinclude.m4:6633: AC_LIBTOOL_PROG_LD_SHLIBS is expanded from... acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from... acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level autoreconf-default: running: automake --add-missing --force-missing configure.ac:419: warning: AC_CACHE_VAL(ac_o3, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_faltivec, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_maltivec, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_mabialtivec, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_fno_schedule_insns, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_m_cpu_7450, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_m_tune_970, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_m_cpu_powerpc, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_funroll_all_loops, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_guessed_cflags, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_guessed_fflags, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:507: ACX_CHECK_F77_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:455: warning: AC_CACHE_VAL(acx_float_format, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:164: ACX_FLOAT_FORMAT is expanded from... configure.ac:455: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from... acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from... acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from... acinclude.m4:6633: AC_LIBTOOL_PROG_LD_SHLIBS is expanded from... acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from... acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from... acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from... acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from... acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from... acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:5190: _LT_AC_LANG_F77_CONFIG is expanded from... acinclude.m4:5189: AC_LIBTOOL_LANG_F77_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:5190: _LT_AC_LANG_F77_CONFIG is expanded from... acinclude.m4:5189: AC_LIBTOOL_LANG_F77_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from... acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from... acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from... acinclude.m4:6633: AC_LIBTOOL_PROG_LD_SHLIBS is expanded from... acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from... acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:331: installing 'config/compile' configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') src/tools/Makefile.am:68: warning: 'LDFLAGS' is a user variable, you should not override it; src/tools/Makefile.am:68: use 'AM_LDFLAGS' instead autoreconf-default: Leaving directory `.' + mkdir single + pushd single ~/RPM/BUILD/gromacs-4.0.7/single ~/RPM/BUILD/gromacs-4.0.7 + buildThis float disable + ln -s ../configure . + CFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2' + export CFLAGS + CXXFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2' + export CXXFLAGS + FFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2' + export FFLAGS + FCFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2' + export FCFLAGS + '[' -n '' ']' ++ printf %s '-pipe -frecord-gcc-switches -Wall -g -O2' ++ sed -r 's/(^|[[:space:]]+)-[^m][^[:space:]]*//g' + ASFLAGS= + export ASFLAGS + export lt_cv_prog_cc_static_works=no + lt_cv_prog_cc_static_works=no + export lt_cv_deplibs_check_method=pass_all + lt_cv_deplibs_check_method=pass_all + readlink -e -- ./configure + xargs -ri dirname -- '{}' + xargs -ri find '{}' -type f '(' -name config.sub -or -name config.guess ')' -printf '%h/\n' + xargs -rn1 install -pm755 -- /usr/share/gnu-config/config.sub /usr/share/gnu-config/config.guess + sort -u + ./configure --build=x86_64-alt-linux --host=x86_64-alt-linux --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/lib --localstatedir=/var/lib --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --disable-dependency-tracking --disable-silent-rules --without-included-gettext --disable-rpath --enable-static=no --enable-shared --enable-float --enable-mpi --enable-prefetch-forces --enable-fortran --with-gnu-ld --with-fft=fftw3 --with-x --with-gsl --disable-mpi --program-suffix= --with-external-blas=-lopenblas configure: WARNING: unrecognized options: --without-included-gettext, --disable-rpath, --enable-prefetch-forces checking build system type... x86_64-alt-linux-gnu checking host system type... x86_64-alt-linux-gnu checking for a BSD-compatible install... /bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether UID '946' is supported by ustar format... yes checking whether GID '946' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar checking for x86_64-alt-linux-cc... no checking for x86_64-alt-linux-icc... no checking for x86_64-alt-linux-xlc... no checking for x86_64-alt-linux-gcc... x86_64-alt-linux-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether x86_64-alt-linux-gcc accepts -g... yes checking for x86_64-alt-linux-gcc option to accept ISO C89... none needed checking whether x86_64-alt-linux-gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of x86_64-alt-linux-gcc... none checking for x86_64-alt-linux-f77... no checking for x86_64-alt-linux-ifort... no checking for x86_64-alt-linux-xlf... no checking for x86_64-alt-linux-xlf77... no checking for x86_64-alt-linux-cf77... no checking for x86_64-alt-linux-fl32... no checking for x86_64-alt-linux-g77... no checking for x86_64-alt-linux-fort77... no checking for x86_64-alt-linux-f90... no checking for x86_64-alt-linux-xlf90... no checking for x86_64-alt-linux-pgf77... no checking for x86_64-alt-linux-cf77... no checking for x86_64-alt-linux-fort... no checking for x86_64-alt-linux-fort77... no checking for x86_64-alt-linux-pgf90... no checking for f77... f77 checking whether we are using the GNU Fortran 77 compiler... yes checking whether f77 accepts -g... yes checking dependency style of x86_64-alt-linux-gcc... none checking how to get verbose linking output from f77... -v checking for Fortran 77 libraries of f77... -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath checking for dummy main to link with Fortran 77 libraries... none checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore checking how to run the C preprocessor... x86_64-alt-linux-gcc -E checking whether x86_64-alt-linux-gcc accepts -O3... yes checking whether x86_64-alt-linux-gcc accepts -funroll-all-loops... yes ****************************************** * Using CFLAGS from environment variable * ****************************************** ****************************************** * Using FFLAGS from environment variable * ****************************************** checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking whether byte ordering is bigendian... no checking size of int... 4 checking size of long int... 8 checking size of long long int... 8 checking size of off_t... 8 checking that size_t can hold pointers... yes checking floating-point format... IEEE754 (little-endian byte and word order) checking whether ln -s works... yes checking whether make sets $(MAKE)... (cached) yes checking for a sed that does not truncate output... /bin/sed checking for ld used by x86_64-alt-linux-gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for /usr/bin/ld option to reload object files... -r checking for BSD-compatible nm... /usr/bin/nm -B checking how to recognise dependent libraries... (cached) pass_all checking dlfcn.h usability... yes checking dlfcn.h presence... yes checking for dlfcn.h... yes checking for x86_64-alt-linux-g++... x86_64-alt-linux-g++ checking whether we are using the GNU C++ compiler... yes checking whether x86_64-alt-linux-g++ accepts -g... yes checking dependency style of x86_64-alt-linux-g++... none checking how to run the C++ preprocessor... x86_64-alt-linux-g++ -E checking the maximum length of command line arguments... 32768 checking command to parse /usr/bin/nm -B output from x86_64-alt-linux-gcc object... ok checking for objdir... .libs checking for x86_64-alt-linux-ar... no checking for ar... ar checking for x86_64-alt-linux-ranlib... no checking for ranlib... ranlib checking for x86_64-alt-linux-strip... no checking for strip... strip checking if x86_64-alt-linux-gcc supports -fno-rtti -fno-exceptions... no checking for x86_64-alt-linux-gcc option to produce PIC... -fPIC checking if x86_64-alt-linux-gcc PIC flag -fPIC works... yes checking if x86_64-alt-linux-gcc static flag -static works... no checking if x86_64-alt-linux-gcc supports -c -o file.o... yes checking whether the x86_64-alt-linux-gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... cat: '/etc/ld.so.conf.d/*.conf': No such file or directory GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no configure: creating libtool appending configuration tag "CXX" to libtool checking for ld used by x86_64-alt-linux-g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the x86_64-alt-linux-g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for x86_64-alt-linux-g++ option to produce PIC... -fPIC checking if x86_64-alt-linux-g++ PIC flag -fPIC works... yes checking if x86_64-alt-linux-g++ static flag -static works... no checking if x86_64-alt-linux-g++ supports -c -o file.o... yes checking whether the x86_64-alt-linux-g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... cat: '/etc/ld.so.conf.d/*.conf': No such file or directory GNU/Linux ld.so checking how to hardcode library paths into programs... immediate appending configuration tag "F77" to libtool checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for f77 option to produce PIC... -fPIC checking if f77 PIC flag -fPIC works... yes checking if f77 static flag -static works... no checking if f77 supports -c -o file.o... yes checking whether the f77 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... cat: '/etc/ld.so.conf.d/*.conf': No such file or directory GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for _LARGEFILE_SOURCE value needed for large files... no checking for sqrt in -lm... yes checking for fftw3.h... yes checking for main in -lfftw3f... yes checking rpc/rpc.h usability... yes checking rpc/rpc.h presence... yes checking for rpc/rpc.h... yes checking for rpc/xdr.h... yes checking for xdr_float in -lnsl... no checking for working memcmp... yes checking return type of signal handlers... void checking for off_t... yes checking for vprintf... yes checking for _doprnt... no checking if malloc debugging is wanted... no checking for strcasecmp... yes checking for strdup... yes checking for bool... no checking size of int... (cached) 4 checking size of long int... (cached) 8 checking size of long long int... (cached) 8 checking size of off_t... (cached) 8 checking size of void*... 8 checking for X... libraries , headers checking for gethostbyname... yes checking for connect... yes checking for remove... yes checking for shmat... yes checking for IceConnectionNumber in -lICE... yes checking gsl/gsl_version.h usability... yes checking gsl/gsl_version.h presence... yes checking for gsl/gsl_version.h... yes checking for main in -lgslcblas... yes checking for main in -lgsl... yes checking libxml/parser.h usability... no checking libxml/parser.h presence... no checking for libxml/parser.h... no checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking for strings.h... (cached) yes checking for unistd.h... (cached) yes checking for unistd.h... (cached) yes checking for an ANSI C-conforming const... yes checking for size_t... yes checking whether struct tm is in sys/time.h or time.h... time.h checking for uid_t in sys/types.h... yes checking for inline... inline checking whether your compiler can handle assembly files (*.s)... yes checking whether as fully supports X86_64 SSE instructions... yes checking whether byte ordering is bigendian... (cached) no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating src/gmxlib/Makefile config.status: creating src/gmxlib/gmx_blas/Makefile config.status: creating src/gmxlib/gmx_lapack/Makefile config.status: creating src/gmxlib/nonbonded/Makefile config.status: creating src/gmxlib/nonbonded/nb_kernel/Makefile config.status: creating src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/Makefile config.status: creating src/gmxlib/nonbonded/nb_kernel_ia32_sse/Makefile config.status: creating src/gmxlib/nonbonded/nb_kernel_ia32_sse2/Makefile config.status: creating src/gmxlib/nonbonded/nb_kernel_x86_64_sse/Makefile config.status: creating src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/Makefile config.status: creating src/gmxlib/nonbonded/nb_kernel_ppc_altivec/Makefile config.status: creating src/gmxlib/nonbonded/nb_kernel_ia64_single/Makefile config.status: creating src/gmxlib/nonbonded/nb_kernel_ia64_double/Makefile config.status: creating src/gmxlib/nonbonded/nb_kernel_bluegene/Makefile config.status: creating include/Makefile config.status: creating include/types/Makefile config.status: creating src/mdlib/Makefile config.status: creating src/kernel/Makefile config.status: creating src/tools/Makefile config.status: creating src/ngmx/Makefile config.status: creating src/contrib/Makefile config.status: creating scripts/Makefile config.status: creating admin/Makefile config.status: creating share/Makefile config.status: creating share/tutor/Makefile config.status: creating share/tutor/gmxdemo/Makefile config.status: creating share/tutor/nmr1/Makefile config.status: creating share/tutor/nmr2/Makefile config.status: creating share/tutor/water/Makefile config.status: creating share/tutor/mixed/Makefile config.status: creating share/tutor/methanol/Makefile config.status: creating share/tutor/speptide/Makefile config.status: creating share/template/Makefile config.status: creating share/top/Makefile config.status: creating share/html/Makefile config.status: creating share/html/images/Makefile config.status: creating share/html/online/Makefile config.status: creating man/Makefile config.status: creating man/man1/Makefile config.status: creating src/config.h config.status: executing depfiles commands configure: WARNING: unrecognized options: --without-included-gettext, --disable-rpath, --enable-prefetch-forces + sed -i 's|^hardcode_libdir_flag_spec=.*|hardcode_libdir_flag_spec=""|g' libtool + sed -i 's|^runpath_var=LD_RUN_PATH|runpath_var=DIE_RPATH_DIE|g' libtool + make -j16 Making all in include Making all in . make[2]: Nothing to be done for 'all-am'. Making all in types make[2]: Nothing to be done for 'all'. Making all in src make all-recursive Making all in gmxlib Making all in nonbonded Making all in nb_kernel_x86_64_sse make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel010_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel010_x86_64_sse.s mkdir .libs x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel010_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel010_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel102_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel102_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel102_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel102_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel104_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel104_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel104_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel104_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel103_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel103_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel103_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel103_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel110_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel110_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel110_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel110_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel112_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel112_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel112_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel112_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel114_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel114_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel114_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel114_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel030_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel030_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel030_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel030_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel100_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel100_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel100_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel100_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel101_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel101_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel101_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel101_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel133_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel133_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel133_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel133_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel113_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel113_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel113_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel113_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel111_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel111_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel111_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel111_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel132_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel132_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel132_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel132_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel130_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel130_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel130_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel130_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel131_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel131_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel131_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel131_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel134_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel134_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel134_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel134_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel200_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel200_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel200_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel200_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel201_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel201_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel201_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel201_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel210_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel210_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel210_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel210_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel203_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel203_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel203_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel203_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel202_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel202_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel202_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel202_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel204_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel204_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel204_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel204_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel232_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel232_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel232_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel232_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel213_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel213_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel213_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel213_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel211_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel211_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel211_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel211_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel231_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel231_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel231_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel231_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel214_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel214_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel214_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel214_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel212_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel212_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel212_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel212_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel230_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel230_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel230_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel230_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel234_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel234_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel234_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel234_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel233_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel233_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel233_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel233_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel300_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel300_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel300_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel300_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel302_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel302_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel302_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel302_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel304_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel304_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel304_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel304_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel303_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel303_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel303_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel303_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel311_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel311_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel311_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel311_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel310_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel310_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel310_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel310_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel301_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel301_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel301_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel301_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel312_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel312_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel312_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel312_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel330_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel330_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel330_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel330_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel313_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel313_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel313_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel313_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel331_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel331_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel331_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel331_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel332_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel332_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel332_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel332_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel333_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel333_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel333_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel333_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel314_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel314_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel314_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel314_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel334_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel334_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel334_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel334_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel400_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel400_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel400_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel400_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel_x86_64_sse_test_asm.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel_x86_64_sse_test_asm.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel_x86_64_sse_test_asm.s -fPIC -DPIC -o .libs/nb_kernel_x86_64_sse_test_asm.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel410_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel410_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel410_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel410_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel430_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel430_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel430_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel430_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse -I../../../../src -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel_x86_64_sse.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse -I../../../../src -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel_x86_64_sse.c -fPIC -DPIC -o .libs/nb_kernel_x86_64_sse.o ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel_x86_64_sse.c: In function 'nb_kernel_x86_64_sse_test': ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel_x86_64_sse.c:209:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if(log) ^~ ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel_x86_64_sse.c:212:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' nb_kernel_x86_64_sse_present = TRUE; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o libnb_kernel_x86_64_sse.la nb_kernel010_x86_64_sse.lo nb_kernel030_x86_64_sse.lo nb_kernel100_x86_64_sse.lo nb_kernel101_x86_64_sse.lo nb_kernel102_x86_64_sse.lo nb_kernel103_x86_64_sse.lo nb_kernel104_x86_64_sse.lo nb_kernel110_x86_64_sse.lo nb_kernel111_x86_64_sse.lo nb_kernel112_x86_64_sse.lo nb_kernel113_x86_64_sse.lo nb_kernel114_x86_64_sse.lo nb_kernel130_x86_64_sse.lo nb_kernel131_x86_64_sse.lo nb_kernel132_x86_64_sse.lo nb_kernel133_x86_64_sse.lo nb_kernel134_x86_64_sse.lo nb_kernel200_x86_64_sse.lo nb_kernel201_x86_64_sse.lo nb_kernel202_x86_64_sse.lo nb_kernel203_x86_64_sse.lo nb_kernel204_x86_64_sse.lo nb_kernel210_x86_64_sse.lo nb_kernel211_x86_64_sse.lo nb_kernel212_x86_64_sse.lo nb_kernel213_x86_64_sse.lo nb_kernel214_x86_64_sse.lo nb_kernel230_x86_64_sse.lo nb_kernel231_x86_64_sse.lo nb_kernel232_x86_64_sse.lo nb_kernel233_x86_64_sse.lo nb_kernel234_x86_64_sse.lo nb_kernel300_x86_64_sse.lo nb_kernel301_x86_64_sse.lo nb_kernel302_x86_64_sse.lo nb_kernel303_x86_64_sse.lo nb_kernel304_x86_64_sse.lo nb_kernel310_x86_64_sse.lo nb_kernel311_x86_64_sse.lo nb_kernel312_x86_64_sse.lo nb_kernel313_x86_64_sse.lo nb_kernel314_x86_64_sse.lo nb_kernel330_x86_64_sse.lo nb_kernel331_x86_64_sse.lo nb_kernel332_x86_64_sse.lo nb_kernel333_x86_64_sse.lo nb_kernel334_x86_64_sse.lo nb_kernel400_x86_64_sse.lo nb_kernel410_x86_64_sse.lo nb_kernel430_x86_64_sse.lo nb_kernel_x86_64_sse_test_asm.lo nb_kernel_x86_64_sse.lo -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath ar cru .libs/libnb_kernel_x86_64_sse.a .libs/nb_kernel010_x86_64_sse.o .libs/nb_kernel030_x86_64_sse.o .libs/nb_kernel100_x86_64_sse.o .libs/nb_kernel101_x86_64_sse.o .libs/nb_kernel102_x86_64_sse.o .libs/nb_kernel103_x86_64_sse.o .libs/nb_kernel104_x86_64_sse.o .libs/nb_kernel110_x86_64_sse.o .libs/nb_kernel111_x86_64_sse.o .libs/nb_kernel112_x86_64_sse.o .libs/nb_kernel113_x86_64_sse.o .libs/nb_kernel114_x86_64_sse.o .libs/nb_kernel130_x86_64_sse.o .libs/nb_kernel131_x86_64_sse.o .libs/nb_kernel132_x86_64_sse.o .libs/nb_kernel133_x86_64_sse.o .libs/nb_kernel134_x86_64_sse.o .libs/nb_kernel200_x86_64_sse.o .libs/nb_kernel201_x86_64_sse.o .libs/nb_kernel202_x86_64_sse.o .libs/nb_kernel203_x86_64_sse.o .libs/nb_kernel204_x86_64_sse.o .libs/nb_kernel210_x86_64_sse.o .libs/nb_kernel211_x86_64_sse.o .libs/nb_kernel212_x86_64_sse.o .libs/nb_kernel213_x86_64_sse.o .libs/nb_kernel214_x86_64_sse.o .libs/nb_kernel230_x86_64_sse.o .libs/nb_kernel231_x86_64_sse.o .libs/nb_kernel232_x86_64_sse.o .libs/nb_kernel233_x86_64_sse.o .libs/nb_kernel234_x86_64_sse.o .libs/nb_kernel300_x86_64_sse.o .libs/nb_kernel301_x86_64_sse.o .libs/nb_kernel302_x86_64_sse.o .libs/nb_kernel303_x86_64_sse.o .libs/nb_kernel304_x86_64_sse.o .libs/nb_kernel310_x86_64_sse.o .libs/nb_kernel311_x86_64_sse.o .libs/nb_kernel312_x86_64_sse.o .libs/nb_kernel313_x86_64_sse.o .libs/nb_kernel314_x86_64_sse.o .libs/nb_kernel330_x86_64_sse.o .libs/nb_kernel331_x86_64_sse.o .libs/nb_kernel332_x86_64_sse.o .libs/nb_kernel333_x86_64_sse.o .libs/nb_kernel334_x86_64_sse.o .libs/nb_kernel400_x86_64_sse.o .libs/nb_kernel410_x86_64_sse.o .libs/nb_kernel430_x86_64_sse.o .libs/nb_kernel_x86_64_sse_test_asm.o .libs/nb_kernel_x86_64_sse.o ranlib .libs/libnb_kernel_x86_64_sse.a creating libnb_kernel_x86_64_sse.la (cd .libs && rm -f libnb_kernel_x86_64_sse.la && ln -s ../libnb_kernel_x86_64_sse.la libnb_kernel_x86_64_sse.la) make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' Making all in nb_kernel make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_common.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_common.c make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb.c make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_outerloop.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_outerloop.c make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_interactions.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_interactions.c make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_declarations.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_declarations.c make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_metacode.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_metacode.c make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_innerloop.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_innerloop.c make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -o mknb mknb.o mknb_metacode.o mknb_common.o mknb_declarations.o mknb_outerloop.o mknb_innerloop.o mknb_interactions.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' rm -f kernel-stamp ./mknb -software_invsqrt -fortran >>> Gromacs nonbonded kernel generator (-h for help) >>> Generating single precision functions in Fortran77. >>> Using Gromacs software version of 1/sqrt(x). Progress: 1% Progress: 2% Progress: 4% Progress: 5% Progress: 7% Progress: 8% Progress: 10% Progress: 11% Progress: 13% Progress: 14% Progress: 16% Progress: 17% Progress: 19% Progress: 20% Progress: 22% Progress: 23% Progress: 25% Progress: 26% Progress: 28% Progress: 29% Progress: 31% Progress: 32% Progress: 34% Progress: 35% Progress: 37% Progress: 38% Progress: 40% Progress: 41% Progress: 43% Progress: 44% Progress: 46% Progress: 47% Progress: 49% Progress: 50% Progress: 52% Progress: 53% Progress: 55% Progress: 56% Progress: 58% Progress: 59% Progress: 61% Progress: 62% Progress: 64% Progress: 65% Progress: 67% Progress: 68% Progress: 70% Progress: 71% Progress: 73% Progress: 74% Progress: 76% Progress: 77% Progress: 79% Progress: 80% Progress: 82% Progress: 83% Progress: 85% Progress: 86% Progress: 88% Progress: 89% Progress: 91% Progress: 92% Progress: 94% Progress: 95% Progress: 97% Progress: 98% Progress: 100% make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make all-am make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel100_f.lo nb_kernel100_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel100_f.f -fPIC -o .libs/nb_kernel100_f.o nb_kernel100_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:202:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:189:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:198:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:185:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:182:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:200:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:199:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:197:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:188:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:203:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:201:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:192:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:195:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:191:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:193:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:196:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:194:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:206:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel010_f.lo nb_kernel010_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel010_f.f -fPIC -o .libs/nb_kernel010_f.o nb_kernel010_f.f:36:38: & charge, 1 Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:37:37: & facel, 1 Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:40:34: & Vc, 1 Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:169:38: & charge, 1 Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:185:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:172:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:181:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:170:37: & facel, 1 Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:168:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:165:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:183:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:182:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:180:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:171:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:186:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:184:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:178:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:173:34: & Vc, 1 Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:179:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:189:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel020_f.lo nb_kernel020_f.f mkdir .libs f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel020_f.f -fPIC -o .libs/nb_kernel020_f.o nb_kernel020_f.f:36:38: & charge, 1 Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:37:37: & facel, 1 Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:40:34: & Vc, 1 Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:196:38: & charge, 1 Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:212:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:199:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:208:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:197:37: & facel, 1 Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:195:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:192:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:210:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:209:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:207:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:198:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:213:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:211:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:205:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:200:34: & Vc, 1 Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:206:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:216:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel110_f.lo nb_kernel110_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel110_f.f -fPIC -o .libs/nb_kernel110_f.o nb_kernel110_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:218:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:205:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:214:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:201:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:198:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:216:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:215:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:213:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:204:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:219:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:217:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:211:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:212:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:222:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel.lo ../../../../../src/gmxlib/nonbonded/nb_kernel/nb_kernel.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel/nb_kernel.c -fPIC -DPIC -o .libs/nb_kernel.o make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel030_f.lo nb_kernel030_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel030_f.f -fPIC -o .libs/nb_kernel030_f.o nb_kernel030_f.f:144:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel030_f.f:320:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel030_f.f:36:38: & charge, 1 Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:37:37: & facel, 1 Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:40:34: & Vc, 1 Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:218:38: & charge, 1 Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:234:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:221:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:230:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:219:37: & facel, 1 Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:217:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:214:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:232:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:231:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:229:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:220:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:235:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:233:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:222:34: & Vc, 1 Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:238:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel120_f.lo nb_kernel120_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel120_f.f -fPIC -o .libs/nb_kernel120_f.o nb_kernel120_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:220:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:207:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:216:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:203:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:200:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:218:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:217:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:215:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:206:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:221:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:219:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:213:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:214:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:224:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel111_f.lo nb_kernel111_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel111_f.f -fPIC -o .libs/nb_kernel111_f.o nb_kernel111_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:294:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:281:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:290:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:277:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:274:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:292:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:291:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:289:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:280:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:295:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:293:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:287:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:288:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:298:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel101_f.lo nb_kernel101_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel101_f.f -fPIC -o .libs/nb_kernel101_f.o nb_kernel101_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:278:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:265:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:274:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:261:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:258:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:276:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:275:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:273:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:264:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:279:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:277:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:268:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:271:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:267:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:269:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:272:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:270:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:282:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel103_f.lo nb_kernel103_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel103_f.f -fPIC -o .libs/nb_kernel103_f.o nb_kernel103_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:278:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:265:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:274:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:261:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:258:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:276:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:275:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:273:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:264:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:279:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:277:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:268:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:271:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:267:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:269:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:272:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:270:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:282:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel121_f.lo nb_kernel121_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel121_f.f -fPIC -o .libs/nb_kernel121_f.o nb_kernel121_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:296:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:283:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:292:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:279:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:276:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:294:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:293:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:291:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:282:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:297:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:295:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:289:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:290:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:300:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel102_f.lo nb_kernel102_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel102_f.f -fPIC -o .libs/nb_kernel102_f.o nb_kernel102_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:444:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:431:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:440:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:427:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:424:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:442:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:441:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:439:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:430:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:445:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:443:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:434:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:437:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:433:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:435:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:438:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:436:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:448:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel113_f.lo nb_kernel113_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel113_f.f -fPIC -o .libs/nb_kernel113_f.o nb_kernel113_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:320:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:307:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:316:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:303:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:300:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:318:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:317:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:315:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:306:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:321:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:319:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:313:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:314:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:324:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel112_f.lo nb_kernel112_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel112_f.f -fPIC -o .libs/nb_kernel112_f.o nb_kernel112_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:458:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:445:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:454:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:441:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:438:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:456:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:455:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:453:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:444:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:459:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:457:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:451:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:452:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:462:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel114_f.lo nb_kernel114_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel114_f.f -fPIC -o .libs/nb_kernel114_f.o nb_kernel114_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:488:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:475:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:484:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:471:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:468:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:486:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:485:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:483:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:474:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:489:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:487:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:481:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:482:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:492:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel104_f.lo nb_kernel104_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel104_f.f -fPIC -o .libs/nb_kernel104_f.o nb_kernel104_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:444:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:431:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:440:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:427:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:424:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:442:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:441:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:439:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:430:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:445:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:443:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:434:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:437:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:433:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:435:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:438:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:436:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:448:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel130_f.lo nb_kernel130_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel130_f.f -fPIC -o .libs/nb_kernel130_f.o nb_kernel130_f.f:153:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel130_f.f:338:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel130_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:245:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:232:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:241:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:228:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:225:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:243:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:242:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:240:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:231:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:246:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:244:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:249:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel200_f.lo nb_kernel200_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel200_f.f -fPIC -o .libs/nb_kernel200_f.o nb_kernel200_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:204:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:200:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:187:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:184:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:202:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:201:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:199:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:205:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:203:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:194:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:197:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:193:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:195:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:198:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:196:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:208:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel123_f.lo nb_kernel123_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel123_f.f -fPIC -o .libs/nb_kernel123_f.o nb_kernel123_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:329:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:316:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:325:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:312:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:309:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:327:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:326:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:324:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:315:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:330:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:328:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:322:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:323:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:333:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel131_f.lo nb_kernel131_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel131_f.f -fPIC -o .libs/nb_kernel131_f.o nb_kernel131_f.f:196:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel131_f.f:451:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel131_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:321:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:308:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:317:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:304:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:301:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:319:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:318:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:316:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:307:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:322:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:320:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:325:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel201_f.lo nb_kernel201_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel201_f.f -fPIC -o .libs/nb_kernel201_f.o nb_kernel201_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:282:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:278:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:265:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:262:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:280:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:279:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:277:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:283:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:281:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:272:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:275:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:271:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:273:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:276:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:274:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:286:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel133_f.lo nb_kernel133_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel133_f.f -fPIC -o .libs/nb_kernel133_f.o nb_kernel133_f.f:210:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel133_f.f:494:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel133_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:352:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:339:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:348:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:335:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:332:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:350:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:349:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:347:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:338:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:353:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:351:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:356:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel122_f.lo nb_kernel122_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel122_f.f -fPIC -o .libs/nb_kernel122_f.o nb_kernel122_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:460:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:447:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:456:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:443:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:440:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:458:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:457:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:455:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:446:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:461:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:459:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:453:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:454:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:464:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel124_f.lo nb_kernel124_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel124_f.f -fPIC -o .libs/nb_kernel124_f.o nb_kernel124_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:497:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:484:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:493:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:480:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:477:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:495:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:494:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:492:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:483:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:498:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:496:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:490:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:491:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:501:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel210_f.lo nb_kernel210_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel210_f.f -fPIC -o .libs/nb_kernel210_f.o nb_kernel210_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:221:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:217:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:204:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:201:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:219:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:218:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:216:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:222:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:220:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:214:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:215:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:225:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel132_f.lo nb_kernel132_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel132_f.f -fPIC -o .libs/nb_kernel132_f.o nb_kernel132_f.f:275:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel132_f.f:694:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel132_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:485:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:472:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:481:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:468:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:465:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:483:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:482:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:480:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:471:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:486:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:484:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:489:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel203_f.lo nb_kernel203_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel203_f.f -fPIC -o .libs/nb_kernel203_f.o nb_kernel203_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:282:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:278:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:265:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:262:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:280:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:279:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:277:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:283:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:281:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:272:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:275:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:271:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:273:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:276:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:274:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:286:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel211_f.lo nb_kernel211_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel211_f.f -fPIC -o .libs/nb_kernel211_f.o nb_kernel211_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:299:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:295:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:282:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:279:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:297:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:296:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:294:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:300:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:298:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:292:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:293:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:303:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel134_f.lo nb_kernel134_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel134_f.f -fPIC -o .libs/nb_kernel134_f.o nb_kernel134_f.f:294:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel134_f.f:746:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel134_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:520:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:507:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:516:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:503:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:500:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:518:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:517:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:515:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:506:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:521:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:519:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:524:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel202_f.lo nb_kernel202_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel202_f.f -fPIC -o .libs/nb_kernel202_f.o nb_kernel202_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:454:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:450:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:437:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:434:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:452:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:451:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:449:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:455:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:453:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:444:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:447:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:443:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:445:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:448:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:446:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:458:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel220_f.lo nb_kernel220_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel220_f.f -fPIC -o .libs/nb_kernel220_f.o nb_kernel220_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:223:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:219:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:206:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:203:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:221:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:220:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:218:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:224:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:222:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:216:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:217:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:227:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel212_f.lo nb_kernel212_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel212_f.f -fPIC -o .libs/nb_kernel212_f.o nb_kernel212_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:469:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:465:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:452:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:449:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:467:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:466:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:464:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:470:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:468:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:462:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:463:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:473:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel213_f.lo nb_kernel213_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel213_f.f -fPIC -o .libs/nb_kernel213_f.o nb_kernel213_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:324:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:320:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:307:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:304:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:322:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:321:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:319:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:325:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:323:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:317:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:318:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:328:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel204_f.lo nb_kernel204_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel204_f.f -fPIC -o .libs/nb_kernel204_f.o nb_kernel204_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:454:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:450:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:437:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:434:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:452:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:451:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:449:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:455:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:453:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:444:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:447:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:443:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:445:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:448:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:446:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:458:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel230_f.lo nb_kernel230_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel230_f.f -fPIC -o .libs/nb_kernel230_f.o nb_kernel230_f.f:155:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel230_f.f:342:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel230_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:247:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:243:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:230:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:227:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:245:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:244:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:242:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:248:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:246:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:251:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel221_f.lo nb_kernel221_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel221_f.f -fPIC -o .libs/nb_kernel221_f.o nb_kernel221_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:301:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:297:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:284:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:281:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:299:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:298:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:296:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:302:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:300:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:294:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:295:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:305:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel223_f.lo nb_kernel223_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel223_f.f -fPIC -o .libs/nb_kernel223_f.o nb_kernel223_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:333:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:329:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:316:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:313:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:331:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:330:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:328:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:334:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:332:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:326:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:327:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:337:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel300_f.lo nb_kernel300_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel300_f.f -fPIC -o .libs/nb_kernel300_f.o nb_kernel300_f.f:139:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel300_f.f:300:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel300_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:219:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:206:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:215:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:202:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:199:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:217:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:216:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:214:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:205:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:220:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:218:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:209:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:208:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:210:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:211:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:223:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel231_f.lo nb_kernel231_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel231_f.f -fPIC -o .libs/nb_kernel231_f.o nb_kernel231_f.f:198:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel231_f.f:457:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel231_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:325:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:321:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:308:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:305:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:323:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:322:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:320:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:326:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:324:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:329:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel214_f.lo nb_kernel214_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel214_f.f -fPIC -o .libs/nb_kernel214_f.o nb_kernel214_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:498:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:494:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:481:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:478:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:496:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:495:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:493:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:499:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:497:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:491:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:492:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:502:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel222_f.lo nb_kernel222_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel222_f.f -fPIC -o .libs/nb_kernel222_f.o nb_kernel222_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:471:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:467:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:454:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:451:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:469:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:468:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:466:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:472:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:470:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:464:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:465:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:475:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel232_f.lo nb_kernel232_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel232_f.f -fPIC -o .libs/nb_kernel232_f.o nb_kernel232_f.f:277:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel232_f.f:706:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel232_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:495:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:491:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:478:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:475:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:493:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:492:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:490:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:496:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:494:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:499:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel301_f.lo nb_kernel301_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel301_f.f -fPIC -o .libs/nb_kernel301_f.o nb_kernel301_f.f:182:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel301_f.f:209:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel301_f.f:235:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel301_f.f:439:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel301_f.f:454:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel301_f.f:468:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel301_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:321:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:308:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:317:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:304:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:301:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:319:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:318:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:316:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:307:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:322:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:320:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:311:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:310:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:312:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:313:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:325:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel233_f.lo nb_kernel233_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel233_f.f -fPIC -o .libs/nb_kernel233_f.o nb_kernel233_f.f:211:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel233_f.f:499:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel233_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:356:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:352:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:339:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:336:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:354:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:353:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:351:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:357:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:355:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:360:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel224_f.lo nb_kernel224_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel224_f.f -fPIC -o .libs/nb_kernel224_f.o nb_kernel224_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:507:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:503:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:490:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:487:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:505:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:504:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:502:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:508:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:506:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:500:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:501:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:511:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel310_f.lo nb_kernel310_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel310_f.f -fPIC -o .libs/nb_kernel310_f.o nb_kernel310_f.f:152:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel310_f.f:332:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel310_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:238:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:225:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:234:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:221:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:218:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:236:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:235:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:233:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:224:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:239:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:237:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:242:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel234_f.lo nb_kernel234_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel234_f.f -fPIC -o .libs/nb_kernel234_f.o nb_kernel234_f.f:295:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel234_f.f:757:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel234_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:530:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:526:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:513:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:510:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:528:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:527:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:525:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:531:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:529:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:534:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel303_f.lo nb_kernel303_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel303_f.f -fPIC -o .libs/nb_kernel303_f.o nb_kernel303_f.f:182:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel303_f.f:208:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel303_f.f:235:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel303_f.f:439:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel303_f.f:453:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel303_f.f:468:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel303_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:321:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:308:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:317:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:304:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:301:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:319:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:318:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:316:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:307:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:322:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:320:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:311:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:310:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:312:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:313:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:325:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel311_f.lo nb_kernel311_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel311_f.f -fPIC -o .libs/nb_kernel311_f.o nb_kernel311_f.f:195:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel311_f.f:227:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel311_f.f:253:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel311_f.f:471:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel311_f.f:490:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel311_f.f:504:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel311_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:340:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:327:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:336:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:323:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:320:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:338:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:337:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:335:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:326:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:341:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:339:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:344:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel320_f.lo nb_kernel320_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel320_f.f -fPIC -o .libs/nb_kernel320_f.o nb_kernel320_f.f:153:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel320_f.f:335:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel320_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:240:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:227:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:236:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:223:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:220:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:238:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:237:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:235:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:226:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:241:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:239:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:244:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel302_f.lo nb_kernel302_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel302_f.f -fPIC -o .libs/nb_kernel302_f.o nb_kernel302_f.f:263:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:290:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:317:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:344:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:371:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:398:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:425:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:452:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:479:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:764:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:779:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:794:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:809:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:824:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:839:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:854:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:869:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:884:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:565:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:552:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:561:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:548:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:545:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:563:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:562:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:560:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:551:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:566:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:564:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:555:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:554:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:556:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:557:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:569:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel330_f.lo nb_kernel330_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel330_f.f -fPIC -o .libs/nb_kernel330_f.o nb_kernel330_f.f:150:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel330_f.f:343:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel330_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:252:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:239:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:248:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:235:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:232:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:250:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:249:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:247:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:238:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:253:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:251:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:256:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel304_f.lo nb_kernel304_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel304_f.f -fPIC -o .libs/nb_kernel304_f.o nb_kernel304_f.f:263:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:290:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:317:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:344:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:371:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:398:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:425:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:452:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:479:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:764:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:779:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:794:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:809:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:824:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:839:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:854:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:869:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:884:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:565:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:552:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:561:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:548:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:545:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:563:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:562:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:560:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:551:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:566:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:564:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:555:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:554:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:556:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:557:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:569:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel313_f.lo nb_kernel313_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel313_f.f -fPIC -o .libs/nb_kernel313_f.o nb_kernel313_f.f:221:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel313_f.f:247:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel313_f.f:274:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel313_f.f:508:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel313_f.f:522:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel313_f.f:537:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel313_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:364:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:351:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:360:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:347:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:344:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:362:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:361:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:359:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:350:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:365:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:363:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:368:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel323_f.lo nb_kernel323_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel323_f.f -fPIC -o .libs/nb_kernel323_f.o nb_kernel323_f.f:230:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel323_f.f:256:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel323_f.f:283:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel323_f.f:526:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel323_f.f:540:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel323_f.f:555:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel323_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:373:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:360:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:369:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:356:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:353:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:371:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:370:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:368:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:359:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:374:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:372:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:377:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel321_f.lo nb_kernel321_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel321_f.f -fPIC -o .libs/nb_kernel321_f.o nb_kernel321_f.f:196:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel321_f.f:229:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel321_f.f:255:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel321_f.f:474:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel321_f.f:494:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel321_f.f:508:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel321_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:342:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:329:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:338:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:325:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:322:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:340:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:339:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:337:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:328:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:343:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:341:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:346:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel312_f.lo nb_kernel312_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel312_f.f -fPIC -o .libs/nb_kernel312_f.o nb_kernel312_f.f:274:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:306:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:333:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:360:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:387:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:414:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:441:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:468:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:495:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:792:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:811:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:826:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:841:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:856:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:871:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:886:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:901:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:916:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:582:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:569:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:578:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:565:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:562:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:580:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:579:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:577:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:568:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:583:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:581:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:586:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel331_f.lo nb_kernel331_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel331_f.f -fPIC -o .libs/nb_kernel331_f.o nb_kernel331_f.f:193:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel331_f.f:241:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel331_f.f:267:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel331_f.f:482:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel331_f.f:514:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel331_f.f:528:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel331_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:354:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:341:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:350:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:337:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:334:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:352:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:351:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:349:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:340:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:355:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:353:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:358:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel_f77sync.lo ../../../../../src/gmxlib/nonbonded/nb_kernel/nb_kernel_f77sync.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel/nb_kernel_f77sync.c -fPIC -DPIC -o .libs/nb_kernel_f77sync.o make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel400_f.lo nb_kernel400_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel400_f.f -fPIC -o .libs/nb_kernel400_f.o nb_kernel400_f.f:147:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel400_f.f:317:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel400_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:231:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:218:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:227:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:214:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:211:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:217:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:232:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:230:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:221:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:224:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:220:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:222:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:225:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:223:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:235:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel314_f.lo nb_kernel314_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel314_f.f -fPIC -o .libs/nb_kernel314_f.o nb_kernel314_f.f:304:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:331:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:358:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:385:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:412:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:439:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:466:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:493:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:520:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:837:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:852:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:867:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:882:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:897:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:912:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:927:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:942:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:957:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:610:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:597:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:606:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:593:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:590:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:608:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:607:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:605:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:596:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:611:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:609:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:614:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel322_f.lo nb_kernel322_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel322_f.f -fPIC -o .libs/nb_kernel322_f.o nb_kernel322_f.f:275:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:308:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:335:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:362:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:389:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:416:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:443:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:470:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:497:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:795:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:815:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:830:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:845:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:860:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:875:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:890:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:905:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:920:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:584:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:571:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:580:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:567:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:564:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:582:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:581:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:579:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:570:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:585:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:583:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:588:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel333_f.lo nb_kernel333_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel333_f.f -fPIC -o .libs/nb_kernel333_f.o nb_kernel333_f.f:210:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel333_f.f:249:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel333_f.f:275:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel333_f.f:302:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel333_f.f:534:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel333_f.f:559:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel333_f.f:573:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel333_f.f:588:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel333_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:392:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:379:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:388:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:375:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:372:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:390:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:389:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:387:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:378:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:393:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:391:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:396:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel410_f.lo nb_kernel410_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel410_f.f -fPIC -o .libs/nb_kernel410_f.o nb_kernel410_f.f:160:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel410_f.f:349:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel410_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:250:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:237:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:246:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:233:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:230:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:236:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:251:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:249:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:243:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:244:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:254:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel420_f.lo nb_kernel420_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel420_f.f -fPIC -o .libs/nb_kernel420_f.o nb_kernel420_f.f:161:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel420_f.f:352:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel420_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:252:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:239:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:248:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:235:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:232:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:238:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:253:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:251:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:245:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:246:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:256:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel430_f.lo nb_kernel430_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel430_f.f -fPIC -o .libs/nb_kernel430_f.o nb_kernel430_f.f:158:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel430_f.f:177:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel430_f.f:365:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel430_f.f:379:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel430_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel430_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel430_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel430_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel430_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel430_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel430_f.f:269:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel430_f.f:256:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel430_f.f:265:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel430_f.f:252:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel430_f.f:249:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel430_f.f:255:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel430_f.f:270:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel430_f.f:268:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel430_f.f:273:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel324_f.lo nb_kernel324_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel324_f.f -fPIC -o .libs/nb_kernel324_f.o nb_kernel324_f.f:313:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:340:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:367:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:394:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:421:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:448:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:475:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:502:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:529:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:855:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:870:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:885:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:900:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:915:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:930:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:945:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:960:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:975:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:619:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:606:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:615:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:602:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:599:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:617:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:616:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:614:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:605:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:620:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:618:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:623:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel332_f.lo nb_kernel332_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel332_f.f -fPIC -o .libs/nb_kernel332_f.o nb_kernel332_f.f:272:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:320:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:347:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:374:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:401:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:428:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:455:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:482:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:509:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:803:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:835:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:850:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:865:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:880:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:895:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:910:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:925:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:940:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:596:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:583:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:592:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:579:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:576:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:594:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:593:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:591:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:582:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:597:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:595:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:600:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel334_f.lo nb_kernel334_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel334_f.f -fPIC -o .libs/nb_kernel334_f.o nb_kernel334_f.f:294:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:332:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:359:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:386:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:413:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:440:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:467:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:494:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:521:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:548:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:864:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:888:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:903:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:918:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:933:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:948:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:963:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:978:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:993:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:1008:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:638:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:625:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:634:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:621:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:618:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:636:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:635:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:633:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:624:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:639:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:637:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:642:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o libnb_kernel.la nb_kernel.lo nb_kernel010_f.lo nb_kernel020_f.lo nb_kernel030_f.lo nb_kernel100_f.lo nb_kernel101_f.lo nb_kernel102_f.lo nb_kernel103_f.lo nb_kernel104_f.lo nb_kernel110_f.lo nb_kernel111_f.lo nb_kernel112_f.lo nb_kernel113_f.lo nb_kernel114_f.lo nb_kernel120_f.lo nb_kernel121_f.lo nb_kernel122_f.lo nb_kernel123_f.lo nb_kernel124_f.lo nb_kernel130_f.lo nb_kernel131_f.lo nb_kernel132_f.lo nb_kernel133_f.lo nb_kernel134_f.lo nb_kernel200_f.lo nb_kernel201_f.lo nb_kernel202_f.lo nb_kernel203_f.lo nb_kernel204_f.lo nb_kernel210_f.lo nb_kernel211_f.lo nb_kernel212_f.lo nb_kernel213_f.lo nb_kernel214_f.lo nb_kernel220_f.lo nb_kernel221_f.lo nb_kernel222_f.lo nb_kernel223_f.lo nb_kernel224_f.lo nb_kernel230_f.lo nb_kernel231_f.lo nb_kernel232_f.lo nb_kernel233_f.lo nb_kernel234_f.lo nb_kernel300_f.lo nb_kernel301_f.lo nb_kernel302_f.lo nb_kernel303_f.lo nb_kernel304_f.lo nb_kernel310_f.lo nb_kernel311_f.lo nb_kernel312_f.lo nb_kernel313_f.lo nb_kernel314_f.lo nb_kernel320_f.lo nb_kernel321_f.lo nb_kernel322_f.lo nb_kernel323_f.lo nb_kernel324_f.lo nb_kernel330_f.lo nb_kernel331_f.lo nb_kernel332_f.lo nb_kernel333_f.lo nb_kernel334_f.lo nb_kernel400_f.lo nb_kernel410_f.lo nb_kernel420_f.lo nb_kernel430_f.lo nb_kernel_f77sync.lo -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath ar cru .libs/libnb_kernel.a .libs/nb_kernel.o .libs/nb_kernel010_f.o .libs/nb_kernel020_f.o .libs/nb_kernel030_f.o .libs/nb_kernel100_f.o .libs/nb_kernel101_f.o .libs/nb_kernel102_f.o .libs/nb_kernel103_f.o .libs/nb_kernel104_f.o .libs/nb_kernel110_f.o .libs/nb_kernel111_f.o .libs/nb_kernel112_f.o .libs/nb_kernel113_f.o .libs/nb_kernel114_f.o .libs/nb_kernel120_f.o .libs/nb_kernel121_f.o .libs/nb_kernel122_f.o .libs/nb_kernel123_f.o .libs/nb_kernel124_f.o .libs/nb_kernel130_f.o .libs/nb_kernel131_f.o .libs/nb_kernel132_f.o .libs/nb_kernel133_f.o .libs/nb_kernel134_f.o .libs/nb_kernel200_f.o .libs/nb_kernel201_f.o .libs/nb_kernel202_f.o .libs/nb_kernel203_f.o .libs/nb_kernel204_f.o .libs/nb_kernel210_f.o .libs/nb_kernel211_f.o .libs/nb_kernel212_f.o .libs/nb_kernel213_f.o .libs/nb_kernel214_f.o .libs/nb_kernel220_f.o .libs/nb_kernel221_f.o .libs/nb_kernel222_f.o .libs/nb_kernel223_f.o .libs/nb_kernel224_f.o .libs/nb_kernel230_f.o .libs/nb_kernel231_f.o .libs/nb_kernel232_f.o .libs/nb_kernel233_f.o .libs/nb_kernel234_f.o .libs/nb_kernel300_f.o .libs/nb_kernel301_f.o .libs/nb_kernel302_f.o .libs/nb_kernel303_f.o .libs/nb_kernel304_f.o .libs/nb_kernel310_f.o .libs/nb_kernel311_f.o .libs/nb_kernel312_f.o .libs/nb_kernel313_f.o .libs/nb_kernel314_f.o .libs/nb_kernel320_f.o .libs/nb_kernel321_f.o .libs/nb_kernel322_f.o .libs/nb_kernel323_f.o .libs/nb_kernel324_f.o .libs/nb_kernel330_f.o .libs/nb_kernel331_f.o .libs/nb_kernel332_f.o .libs/nb_kernel333_f.o .libs/nb_kernel334_f.o .libs/nb_kernel400_f.o .libs/nb_kernel410_f.o .libs/nb_kernel420_f.o .libs/nb_kernel430_f.o .libs/nb_kernel_f77sync.o ranlib .libs/libnb_kernel.a creating libnb_kernel.la (cd .libs && rm -f libnb_kernel.la && ln -s ../libnb_kernel.la libnb_kernel.la) make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_generic.lo ../../../../src/gmxlib/nonbonded/nb_generic.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/nonbonded/nb_generic.c -fPIC -DPIC -o .libs/nb_generic.o ../../../../src/gmxlib/nonbonded/nb_generic.c: In function 'gmx_nb_generic_kernel': ../../../../src/gmxlib/nonbonded/nb_generic.c:82:16: warning: unused variable 'shift' [-Wunused-variable] int * shift; ^~~~~ ../../../../src/gmxlib/nonbonded/nb_generic.c:62:25: warning: unused variable 'gbtabscale' [-Wunused-variable] real facel,gbtabscale; ^~~~~~~~~~ ../../../../src/gmxlib/nonbonded/nb_generic.c:61:19: warning: unused variable 'nri' [-Wunused-variable] int nri,ntype,table_nelements,icoul,ivdw; ^~~ In file included from ../../../../src/gmxlib/nonbonded/nb_generic.c:43: At top level: ../../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../../include/vec.h:121, from ../../../../src/gmxlib/nonbonded/nb_generic.c:43: ../../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_free_energy.lo ../../../../src/gmxlib/nonbonded/nb_free_energy.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/nonbonded/nb_free_energy.c -fPIC -DPIC -o .libs/nb_free_energy.o ../../../../src/gmxlib/nonbonded/nb_free_energy.c: In function 'gmx_nb_free_energy_kernel': ../../../../src/gmxlib/nonbonded/nb_free_energy.c:100:25: warning: unused variable 'H' [-Wunused-variable] real Y,F,G,H,Fp,Geps,Heps2,eps,eps2,VV,FF; ^ ../../../../src/gmxlib/nonbonded/nb_free_energy.c:100:23: warning: unused variable 'G' [-Wunused-variable] real Y,F,G,H,Fp,Geps,Heps2,eps,eps2,VV,FF; ^ ../../../../src/gmxlib/nonbonded/nb_free_energy.c:89:19: warning: unused variable 'rinvsix' [-Wunused-variable] real rinvsix; ^~~~~~~ ../../../../src/gmxlib/nonbonded/nb_free_energy.c:86:27: warning: unused variable 'vcoul' [-Wunused-variable] real qqA,qqB,vcoul,vctot,krsq; ^~~~~ In file included from ../../../../src/gmxlib/nonbonded/nb_free_energy.c:42: At top level: ../../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../../include/vec.h:121, from ../../../../src/gmxlib/nonbonded/nb_free_energy.c:42: ../../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nonbonded.lo ../../../../src/gmxlib/nonbonded/nonbonded.c mkdir .libs x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/nonbonded/nonbonded.c -fPIC -DPIC -o .libs/nonbonded.o ../../../../src/gmxlib/nonbonded/nonbonded.c: In function 'do_nonbonded': ../../../../src/gmxlib/nonbonded/nonbonded.c:283:18: warning: unused variable 'fp' [-Wunused-variable] FILE * fp; ^~ ../../../../src/gmxlib/nonbonded/nonbonded.c:281:18: warning: unused variable 'bWater' [-Wunused-variable] bool bWater; ^~~~~~ ../../../../src/gmxlib/nonbonded/nonbonded.c:279:43: warning: unused variable 'sz' [-Wunused-variable] int n,n0,n1,i,i0,i1,nrnb_ind,sz; ^~ ../../../../src/gmxlib/nonbonded/nonbonded.c: In function 'do_listed_vdw_q': ../../../../src/gmxlib/nonbonded/nonbonded.c:547:15: warning: unused variable 'tmplist' [-Wunused-variable] t_nblist tmplist; ^~~~~~~ ../../../../src/gmxlib/nonbonded/nonbonded.c:538:25: warning: unused variable 'i2' [-Wunused-variable] int i0=0,i1=1,i2=2; ^~ In file included from ../../../../src/gmxlib/nonbonded/nonbonded.c:53: At top level: ../../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../../src/gmxlib/nonbonded/nonbonded.c:50: ../../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../../include/vec.h:121, from ../../../../src/gmxlib/nonbonded/nonbonded.c:50: ../../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded' /bin/sh ../../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o libnonbonded.la nonbonded.lo nb_free_energy.lo nb_generic.lo nb_kernel_x86_64_sse/libnb_kernel_x86_64_sse.la nb_kernel/libnb_kernel.la -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath rm -fr .libs/libnonbonded.lax mkdir .libs/libnonbonded.lax rm -fr .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a mkdir .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a (cd .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a && ar x /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/.libs/libnb_kernel_x86_64_sse.a) rm -fr .libs/libnonbonded.lax/libnb_kernel.a mkdir .libs/libnonbonded.lax/libnb_kernel.a (cd .libs/libnonbonded.lax/libnb_kernel.a && ar x /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel/.libs/libnb_kernel.a) ar cru .libs/libnonbonded.a .libs/nonbonded.o .libs/nb_free_energy.o .libs/nb_generic.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel_x86_64_sse_test_asm.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel430_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel410_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel400_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel334_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel333_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel332_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel331_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel330_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel314_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel313_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel312_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel311_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel310_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel304_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel303_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel302_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel301_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel300_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel234_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel233_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel232_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel231_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel230_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel214_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel213_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel212_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel211_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel210_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel204_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel203_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel202_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel201_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel200_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel134_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel133_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel132_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel131_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel130_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel114_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel113_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel112_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel111_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel110_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel104_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel103_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel102_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel101_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel100_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel030_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel010_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel_f77sync.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel430_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel420_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel410_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel400_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel334_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel333_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel332_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel331_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel330_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel324_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel323_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel322_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel321_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel320_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel314_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel313_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel312_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel311_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel310_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel304_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel303_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel302_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel301_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel300_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel234_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel233_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel232_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel231_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel230_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel224_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel223_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel222_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel221_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel220_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel214_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel213_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel212_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel211_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel210_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel204_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel203_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel202_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel201_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel200_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel134_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel133_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel132_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel131_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel130_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel124_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel123_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel122_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel121_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel120_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel114_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel113_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel112_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel111_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel110_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel104_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel103_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel102_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel101_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel100_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel030_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel020_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel010_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel.o ranlib .libs/libnonbonded.a rm -fr .libs/libnonbonded.lax creating libnonbonded.la (cd .libs && rm -f libnonbonded.la && ln -s ../libnonbonded.la libnonbonded.la) make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded' Making all in gmx_blas make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dswap.lo ../../../../src/gmxlib/gmx_blas/dswap.c mkdir .libs x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dswap.c -fPIC -DPIC -o .libs/dswap.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o drot.lo ../../../../src/gmxlib/gmx_blas/drot.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/drot.c -fPIC -DPIC -o .libs/drot.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dnrm2.lo ../../../../src/gmxlib/gmx_blas/dnrm2.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dnrm2.c -fPIC -DPIC -o .libs/dnrm2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dger.lo ../../../../src/gmxlib/gmx_blas/dger.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dger.c -fPIC -DPIC -o .libs/dger.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o daxpy.lo ../../../../src/gmxlib/gmx_blas/daxpy.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/daxpy.c -fPIC -DPIC -o .libs/daxpy.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dasum.lo ../../../../src/gmxlib/gmx_blas/dasum.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dasum.c -fPIC -DPIC -o .libs/dasum.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dcopy.lo ../../../../src/gmxlib/gmx_blas/dcopy.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dcopy.c -fPIC -DPIC -o .libs/dcopy.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dsyr2.lo ../../../../src/gmxlib/gmx_blas/dsyr2.c mkdir .libs mkdir: cannot create directory '.libs': File exists x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dsyr2.c -fPIC -DPIC -o .libs/dsyr2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dgemv.lo ../../../../src/gmxlib/gmx_blas/dgemv.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dgemv.c -fPIC -DPIC -o .libs/dgemv.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dscal.lo ../../../../src/gmxlib/gmx_blas/dscal.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dscal.c -fPIC -DPIC -o .libs/dscal.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ddot.lo ../../../../src/gmxlib/gmx_blas/ddot.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/ddot.c -fPIC -DPIC -o .libs/ddot.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dgemm.lo ../../../../src/gmxlib/gmx_blas/dgemm.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dgemm.c -fPIC -DPIC -o .libs/dgemm.o ../../../../src/gmxlib/gmx_blas/dgemm.c: In function 'dgemm_': ../../../../src/gmxlib/gmx_blas/dgemm.c:27:19: warning: variable 'nrowb' set but not used [-Wunused-but-set-variable] int nrowa,ncola,nrowb; ^~~~~ ../../../../src/gmxlib/gmx_blas/dgemm.c:27:13: warning: variable 'ncola' set but not used [-Wunused-but-set-variable] int nrowa,ncola,nrowb; ^~~~~ ../../../../src/gmxlib/gmx_blas/dgemm.c:27:7: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable] int nrowa,ncola,nrowb; ^~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dsymv.lo ../../../../src/gmxlib/gmx_blas/dsymv.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dsymv.c -fPIC -DPIC -o .libs/dsymv.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dsyr2k.lo ../../../../src/gmxlib/gmx_blas/dsyr2k.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dsyr2k.c -fPIC -DPIC -o .libs/dsyr2k.o ../../../../src/gmxlib/gmx_blas/dsyr2k.c: In function 'dsyr2k_': ../../../../src/gmxlib/gmx_blas/dsyr2k.c:23:7: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable] int nrowa; ^~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dtrmm.lo ../../../../src/gmxlib/gmx_blas/dtrmm.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dtrmm.c -fPIC -DPIC -o .libs/dtrmm.o ../../../../src/gmxlib/gmx_blas/dtrmm.c: In function 'dtrmm_': ../../../../src/gmxlib/gmx_blas/dtrmm.c:32:9: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable] int nrowa; ^~~~~ ../../../../src/gmxlib/gmx_blas/dtrmm.c:29:20: warning: variable 'info' set but not used [-Wunused-but-set-variable] int i__, j, k, info; ^~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dtrsm.lo ../../../../src/gmxlib/gmx_blas/dtrsm.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dtrsm.c -fPIC -DPIC -o .libs/dtrsm.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sasum.lo ../../../../src/gmxlib/gmx_blas/sasum.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/sasum.c -fPIC -DPIC -o .libs/sasum.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o scopy.lo ../../../../src/gmxlib/gmx_blas/scopy.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/scopy.c -fPIC -DPIC -o .libs/scopy.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o idamax.lo ../../../../src/gmxlib/gmx_blas/idamax.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/idamax.c -fPIC -DPIC -o .libs/idamax.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sger.lo ../../../../src/gmxlib/gmx_blas/sger.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/sger.c -fPIC -DPIC -o .libs/sger.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sswap.lo ../../../../src/gmxlib/gmx_blas/sswap.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/sswap.c -fPIC -DPIC -o .libs/sswap.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o srot.lo ../../../../src/gmxlib/gmx_blas/srot.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/srot.c -fPIC -DPIC -o .libs/srot.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o saxpy.lo ../../../../src/gmxlib/gmx_blas/saxpy.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/saxpy.c -fPIC -DPIC -o .libs/saxpy.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dtrmv.lo ../../../../src/gmxlib/gmx_blas/dtrmv.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dtrmv.c -fPIC -DPIC -o .libs/dtrmv.o ../../../../src/gmxlib/gmx_blas/dtrmv.c: In function 'dtrmv_': ../../../../src/gmxlib/gmx_blas/dtrmv.c:18:29: warning: variable 'info' set but not used [-Wunused-but-set-variable] int i__, j, ix, jx, kx, info; ^~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ssyr2.lo ../../../../src/gmxlib/gmx_blas/ssyr2.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/ssyr2.c -fPIC -DPIC -o .libs/ssyr2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sgemm.lo ../../../../src/gmxlib/gmx_blas/sgemm.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/sgemm.c -fPIC -DPIC -o .libs/sgemm.o ../../../../src/gmxlib/gmx_blas/sgemm.c: In function 'sgemm_': ../../../../src/gmxlib/gmx_blas/sgemm.c:26:19: warning: variable 'nrowb' set but not used [-Wunused-but-set-variable] int nrowa,ncola,nrowb; ^~~~~ ../../../../src/gmxlib/gmx_blas/sgemm.c:26:13: warning: variable 'ncola' set but not used [-Wunused-but-set-variable] int nrowa,ncola,nrowb; ^~~~~ ../../../../src/gmxlib/gmx_blas/sgemm.c:26:7: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable] int nrowa,ncola,nrowb; ^~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sdot.lo ../../../../src/gmxlib/gmx_blas/sdot.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/sdot.c -fPIC -DPIC -o .libs/sdot.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o snrm2.lo ../../../../src/gmxlib/gmx_blas/snrm2.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/snrm2.c -fPIC -DPIC -o .libs/snrm2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sscal.lo ../../../../src/gmxlib/gmx_blas/sscal.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/sscal.c -fPIC -DPIC -o .libs/sscal.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sgemv.lo ../../../../src/gmxlib/gmx_blas/sgemv.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/sgemv.c -fPIC -DPIC -o .libs/sgemv.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o isamax.lo ../../../../src/gmxlib/gmx_blas/isamax.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/isamax.c -fPIC -DPIC -o .libs/isamax.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o strmm.lo ../../../../src/gmxlib/gmx_blas/strmm.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/strmm.c -fPIC -DPIC -o .libs/strmm.o ../../../../src/gmxlib/gmx_blas/strmm.c: In function 'strmm_': ../../../../src/gmxlib/gmx_blas/strmm.c:31:9: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable] int nrowa; ^~~~~ ../../../../src/gmxlib/gmx_blas/strmm.c:28:20: warning: variable 'info' set but not used [-Wunused-but-set-variable] int i__, j, k, info; ^~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o strsm.lo ../../../../src/gmxlib/gmx_blas/strsm.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/strsm.c -fPIC -DPIC -o .libs/strsm.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ssymv.lo ../../../../src/gmxlib/gmx_blas/ssymv.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/ssymv.c -fPIC -DPIC -o .libs/ssymv.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o strmv.lo ../../../../src/gmxlib/gmx_blas/strmv.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/strmv.c -fPIC -DPIC -o .libs/strmv.o ../../../../src/gmxlib/gmx_blas/strmv.c: In function 'strmv_': ../../../../src/gmxlib/gmx_blas/strmv.c:18:29: warning: variable 'info' set but not used [-Wunused-but-set-variable] int i__, j, ix, jx, kx, info; ^~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ssyr2k.lo ../../../../src/gmxlib/gmx_blas/ssyr2k.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/ssyr2k.c -fPIC -DPIC -o .libs/ssyr2k.o ../../../../src/gmxlib/gmx_blas/ssyr2k.c: In function 'ssyr2k_': ../../../../src/gmxlib/gmx_blas/ssyr2k.c:22:7: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable] int nrowa; ^~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o libblas.la dasum.lo dcopy.lo dgemm.lo dger.lo drot.lo dswap.lo dsyr2.lo dtrmm.lo dtrsm.lo daxpy.lo ddot.lo dgemv.lo dnrm2.lo dscal.lo dsymv.lo dsyr2k.lo dtrmv.lo idamax.lo sasum.lo scopy.lo sgemm.lo sger.lo srot.lo sswap.lo ssyr2.lo strmm.lo strsm.lo saxpy.lo sdot.lo sgemv.lo snrm2.lo sscal.lo ssymv.lo ssyr2k.lo strmv.lo isamax.lo -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath ar cru .libs/libblas.a .libs/dasum.o .libs/dcopy.o .libs/dgemm.o .libs/dger.o .libs/drot.o .libs/dswap.o .libs/dsyr2.o .libs/dtrmm.o .libs/dtrsm.o .libs/daxpy.o .libs/ddot.o .libs/dgemv.o .libs/dnrm2.o .libs/dscal.o .libs/dsymv.o .libs/dsyr2k.o .libs/dtrmv.o .libs/idamax.o .libs/sasum.o .libs/scopy.o .libs/sgemm.o .libs/sger.o .libs/srot.o .libs/sswap.o .libs/ssyr2.o .libs/strmm.o .libs/strsm.o .libs/saxpy.o .libs/sdot.o .libs/sgemv.o .libs/snrm2.o .libs/sscal.o .libs/ssymv.o .libs/ssyr2k.o .libs/strmv.o .libs/isamax.o ranlib .libs/libblas.a creating libblas.la (cd .libs && rm -f libblas.la && ln -s ../libblas.la libblas.la) make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' Making all in gmx_lapack make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dorgl2.lo ../../../../src/gmxlib/gmx_lapack/dorgl2.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dorgl2.c -fPIC -DPIC -o .libs/dorgl2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlamrg.lo ../../../../src/gmxlib/gmx_lapack/dlamrg.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlamrg.c -fPIC -DPIC -o .libs/dlamrg.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlarnv.lo ../../../../src/gmxlib/gmx_lapack/dlarnv.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlarnv.c -fPIC -DPIC -o .libs/dlarnv.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dgetrf.lo ../../../../src/gmxlib/gmx_lapack/dgetrf.c mkdir .libs mkdir: cannot create directory '.libs': File exists x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgetrf.c -fPIC -DPIC -o .libs/dgetrf.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dgetf2.lo ../../../../src/gmxlib/gmx_lapack/dgetf2.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgetf2.c -fPIC -DPIC -o .libs/dgetf2.o ../../../../src/gmxlib/gmx_lapack/dgetf2.c: In function 'dgetf2_': ../../../../src/gmxlib/gmx_lapack/dgetf2.c:17:10: warning: variable 'one' set but not used [-Wunused-but-set-variable] double one,minusone; ^~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasq6.lo ../../../../src/gmxlib/gmx_lapack/dlasq6.c mkdir .libs mkdir: cannot create directory '.libs': File exists x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasq6.c -fPIC -DPIC -o .libs/dlasq6.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlange.lo ../../../../src/gmxlib/gmx_lapack/dlange.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlange.c -fPIC -DPIC -o .libs/dlange.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasd0.lo ../../../../src/gmxlib/gmx_lapack/dlasd0.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasd0.c -fPIC -DPIC -o .libs/dlasd0.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dtrtri.lo ../../../../src/gmxlib/gmx_lapack/dtrtri.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dtrtri.c -fPIC -DPIC -o .libs/dtrtri.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dormqr.lo ../../../../src/gmxlib/gmx_lapack/dormqr.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dormqr.c -fPIC -DPIC -o .libs/dormqr.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasd1.lo ../../../../src/gmxlib/gmx_lapack/dlasd1.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasd1.c -fPIC -DPIC -o .libs/dlasd1.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasda.lo ../../../../src/gmxlib/gmx_lapack/dlasda.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasda.c -fPIC -DPIC -o .libs/dlasda.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasdq.lo ../../../../src/gmxlib/gmx_lapack/dlasdq.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasdq.c -fPIC -DPIC -o .libs/dlasdq.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dbdsdc.lo ../../../../src/gmxlib/gmx_lapack/dbdsdc.c mkdir .libs x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dbdsdc.c -fPIC -DPIC -o .libs/dbdsdc.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasr.lo ../../../../src/gmxlib/gmx_lapack/dlasr.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasr.c -fPIC -DPIC -o .libs/dlasr.o ../../../../src/gmxlib/gmx_lapack/dlasr.c: In function 'dlasr_': ../../../../src/gmxlib/gmx_lapack/dlasr.c:21:17: warning: variable 'info' set but not used [-Wunused-but-set-variable] int i__, j, info; ^~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dormtr.lo ../../../../src/gmxlib/gmx_lapack/dormtr.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dormtr.c -fPIC -DPIC -o .libs/dormtr.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dorglq.lo ../../../../src/gmxlib/gmx_lapack/dorglq.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dorglq.c -fPIC -DPIC -o .libs/dorglq.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dgebd2.lo ../../../../src/gmxlib/gmx_lapack/dgebd2.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgebd2.c -fPIC -DPIC -o .libs/dgebd2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlanst.lo ../../../../src/gmxlib/gmx_lapack/dlanst.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlanst.c -fPIC -DPIC -o .libs/dlanst.o make[4]: Leaving directory 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-I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasrt.lo ../../../../src/gmxlib/gmx_lapack/dlasrt.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasrt.c -fPIC -DPIC -o .libs/dlasrt.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dgebrd.lo ../../../../src/gmxlib/gmx_lapack/dgebrd.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgebrd.c -fPIC -DPIC -o .libs/dgebrd.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dorgqr.lo ../../../../src/gmxlib/gmx_lapack/dorgqr.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dorgqr.c -fPIC -DPIC -o .libs/dorgqr.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlacpy.lo ../../../../src/gmxlib/gmx_lapack/dlacpy.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlacpy.c -fPIC -DPIC -o .libs/dlacpy.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dbdsqr.lo ../../../../src/gmxlib/gmx_lapack/dbdsqr.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dbdsqr.c -fPIC -DPIC -o .libs/dbdsqr.o ../../../../src/gmxlib/gmx_lapack/dbdsqr.c: In function 'dbdsqr_': ../../../../src/gmxlib/gmx_lapack/dbdsqr.c:61:12: warning: unused variable 'ftmp' [-Wunused-variable] double ftmp; ^~~~ ../../../../src/gmxlib/gmx_lapack/dbdsqr.c:59:12: warning: variable 'sminlo' set but not used [-Wunused-but-set-variable] double sminlo, tolmul; ^~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' 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[-Wunused-but-set-variable] int i__, i1, i2, i3, ic, jc, mi, ni, nq; ^~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dgetri.lo ../../../../src/gmxlib/gmx_lapack/dgetri.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgetri.c -fPIC -DPIC -o .libs/dgetri.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' 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/bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dgeqrf.lo ../../../../src/gmxlib/gmx_lapack/dgeqrf.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgeqrf.c -fPIC -DPIC -o .libs/dgeqrf.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlagtf.lo ../../../../src/gmxlib/gmx_lapack/dlagtf.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlagtf.c -fPIC -DPIC -o .libs/dlagtf.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlarfg.lo ../../../../src/gmxlib/gmx_lapack/dlarfg.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c 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/bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dgesdd.lo ../../../../src/gmxlib/gmx_lapack/dgesdd.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgesdd.c -fPIC -DPIC -o .libs/dgesdd.o ../../../../src/gmxlib/gmx_lapack/dgesdd.c: In function 'dgesdd_': ../../../../src/gmxlib/gmx_lapack/dgesdd.c:40:9: warning: variable 'wntqas' set but not used [-Wunused-but-set-variable] int wntqas, lquery; ^~~~~~ ../../../../src/gmxlib/gmx_lapack/dgesdd.c:38:9: warning: variable 'minwrk' set but not used [-Wunused-but-set-variable] int minwrk, ldwrku, maxwrk, ldwkvt; ^~~~~~ ../../../../src/gmxlib/gmx_lapack/dgesdd.c:35:16: warning: variable 'wntqo' set but not used [-Wunused-but-set-variable] int wntqn, wntqo, wntqs; ^~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasd8.lo ../../../../src/gmxlib/gmx_lapack/dlasd8.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasd8.c -fPIC -DPIC -o .libs/dlasd8.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasq5.lo ../../../../src/gmxlib/gmx_lapack/dlasq5.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasq5.c -fPIC -DPIC -o .libs/dlasq5.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasrt2.lo ../../../../src/gmxlib/gmx_lapack/dlasrt2.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasrt2.c -fPIC -DPIC -o .libs/dlasrt2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dsyevr.lo ../../../../src/gmxlib/gmx_lapack/dsyevr.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dsyevr.c -fPIC -DPIC -o .libs/dsyevr.o ../../../../src/gmxlib/gmx_lapack/dsyevr.c: In function 'dsyevr_': ../../../../src/gmxlib/gmx_lapack/dsyevr.c:36:12: warning: variable 'abstll' set but not used [-Wunused-but-set-variable] double abstll, bignum; ^~~~~~ ../../../../src/gmxlib/gmx_lapack/dsyevr.c:33:17: warning: variable 'ieeeok' set but not used [-Wunused-but-set-variable] int iscale, ieeeok, indibl, indifl; ^~~~~~ ../../../../src/gmxlib/gmx_lapack/dsyevr.c:21:22: warning: variable 'vuu' set but not used [-Wunused-but-set-variable] double eps, vll, vuu, tmp1; ^~~ ../../../../src/gmxlib/gmx_lapack/dsyevr.c:21:17: warning: variable 'vll' set but not used [-Wunused-but-set-variable] double eps, vll, vuu, tmp1; ^~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlarrfx.lo ../../../../src/gmxlib/gmx_lapack/dlarrfx.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlarrfx.c -fPIC -DPIC -o .libs/dlarrfx.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlansy.lo ../../../../src/gmxlib/gmx_lapack/dlansy.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlansy.c -fPIC -DPIC -o .libs/dlansy.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slamrg.lo ../../../../src/gmxlib/gmx_lapack/slamrg.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slamrg.c -fPIC -DPIC -o .libs/slamrg.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dsteqr.lo ../../../../src/gmxlib/gmx_lapack/dsteqr.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dsteqr.c -fPIC -DPIC -o .libs/dsteqr.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slarnv.lo ../../../../src/gmxlib/gmx_lapack/slarnv.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarnv.c -fPIC -DPIC -o .libs/slarnv.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlar1vx.lo ../../../../src/gmxlib/gmx_lapack/dlar1vx.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlar1vx.c -fPIC -DPIC -o .libs/dlar1vx.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sgetf2.lo ../../../../src/gmxlib/gmx_lapack/sgetf2.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgetf2.c -fPIC -DPIC -o .libs/sgetf2.o ../../../../src/gmxlib/gmx_lapack/sgetf2.c: In function 'sgetf2_': ../../../../src/gmxlib/gmx_lapack/sgetf2.c:17:9: warning: variable 'one' set but not used [-Wunused-but-set-variable] float one,minusone; ^~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlarrbx.lo ../../../../src/gmxlib/gmx_lapack/dlarrbx.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlarrbx.c -fPIC -DPIC -o .libs/dlarrbx.o ../../../../src/gmxlib/gmx_lapack/dlarrbx.c: In function 'dlarrbx_': ../../../../src/gmxlib/gmx_lapack/dlarrbx.c:36:33: warning: variable 'error' set but not used [-Wunused-but-set-variable] double right, width, dplus, error; ^~~~~ ../../../../src/gmxlib/gmx_lapack/dlarrbx.c:34:12: warning: variable 'eps' set but not used [-Wunused-but-set-variable] double eps, tmp, left; ^~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sorgl2.lo ../../../../src/gmxlib/gmx_lapack/sorgl2.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sorgl2.c -fPIC -DPIC -o .libs/sorgl2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sbdsdc.lo ../../../../src/gmxlib/gmx_lapack/sbdsdc.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sbdsdc.c -fPIC -DPIC -o .libs/sbdsdc.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasq6.lo ../../../../src/gmxlib/gmx_lapack/slasq6.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasq6.c -fPIC -DPIC -o .libs/slasq6.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasd0.lo ../../../../src/gmxlib/gmx_lapack/slasd0.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasd0.c -fPIC -DPIC -o .libs/slasd0.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sormqr.lo ../../../../src/gmxlib/gmx_lapack/sormqr.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sormqr.c -fPIC -DPIC -o .libs/sormqr.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasda.lo ../../../../src/gmxlib/gmx_lapack/slasda.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasda.c -fPIC -DPIC -o .libs/slasda.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlarrex.lo ../../../../src/gmxlib/gmx_lapack/dlarrex.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlarrex.c -fPIC -DPIC -o .libs/dlarrex.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sgetrf.lo ../../../../src/gmxlib/gmx_lapack/sgetrf.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgetrf.c -fPIC -DPIC -o .libs/sgetrf.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlarrvx.lo ../../../../src/gmxlib/gmx_lapack/dlarrvx.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlarrvx.c -fPIC -DPIC -o .libs/dlarrvx.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slange.lo ../../../../src/gmxlib/gmx_lapack/slange.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slange.c -fPIC -DPIC -o .libs/slange.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ssytrd.lo ../../../../src/gmxlib/gmx_lapack/ssytrd.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/ssytrd.c -fPIC -DPIC -o .libs/ssytrd.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasd1.lo ../../../../src/gmxlib/gmx_lapack/slasd1.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasd1.c -fPIC -DPIC -o .libs/slasd1.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sorglq.lo ../../../../src/gmxlib/gmx_lapack/sorglq.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sorglq.c -fPIC -DPIC -o .libs/sorglq.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasdq.lo ../../../../src/gmxlib/gmx_lapack/slasdq.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasdq.c -fPIC -DPIC -o .libs/slasdq.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sormtr.lo ../../../../src/gmxlib/gmx_lapack/sormtr.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sormtr.c -fPIC -DPIC -o .libs/sormtr.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sgebd2.lo ../../../../src/gmxlib/gmx_lapack/sgebd2.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgebd2.c -fPIC -DPIC -o .libs/sgebd2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slanst.lo ../../../../src/gmxlib/gmx_lapack/slanst.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slanst.c -fPIC -DPIC -o .libs/slanst.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasr.lo ../../../../src/gmxlib/gmx_lapack/slasr.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasr.c -fPIC -DPIC -o .libs/slasr.o ../../../../src/gmxlib/gmx_lapack/slasr.c: In function 'slasr_': ../../../../src/gmxlib/gmx_lapack/slasr.c:21:17: warning: variable 'info' set but not used [-Wunused-but-set-variable] int i__, j, info; ^~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasdt.lo ../../../../src/gmxlib/gmx_lapack/slasdt.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasdt.c -fPIC -DPIC -o .libs/slasdt.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasrt.lo ../../../../src/gmxlib/gmx_lapack/slasrt.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasrt.c -fPIC -DPIC -o .libs/slasrt.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sgetrs.lo ../../../../src/gmxlib/gmx_lapack/sgetrs.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgetrs.c -fPIC -DPIC -o .libs/sgetrs.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sorgqr.lo ../../../../src/gmxlib/gmx_lapack/sorgqr.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sorgqr.c -fPIC -DPIC -o .libs/sorgqr.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slacpy.lo ../../../../src/gmxlib/gmx_lapack/slacpy.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slacpy.c -fPIC -DPIC -o .libs/slacpy.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slabrd.lo ../../../../src/gmxlib/gmx_lapack/slabrd.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slabrd.c -fPIC -DPIC -o .libs/slabrd.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sgebrd.lo ../../../../src/gmxlib/gmx_lapack/sgebrd.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgebrd.c -fPIC -DPIC -o .libs/sgebrd.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slaset.lo ../../../../src/gmxlib/gmx_lapack/slaset.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slaset.c -fPIC -DPIC -o .libs/slaset.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasd2.lo ../../../../src/gmxlib/gmx_lapack/slasd2.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasd2.c -fPIC -DPIC -o .libs/slasd2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slapy2.lo ../../../../src/gmxlib/gmx_lapack/slapy2.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slapy2.c -fPIC -DPIC -o .libs/slapy2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sbdsqr.lo ../../../../src/gmxlib/gmx_lapack/sbdsqr.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sbdsqr.c -fPIC -DPIC -o .libs/sbdsqr.o ../../../../src/gmxlib/gmx_lapack/sbdsqr.c: In function 'sbdsqr_': ../../../../src/gmxlib/gmx_lapack/sbdsqr.c:61:11: warning: unused variable 'ftmp' [-Wunused-variable] float ftmp; ^~~~ ../../../../src/gmxlib/gmx_lapack/sbdsqr.c:59:11: warning: variable 'sminlo' set but not used [-Wunused-but-set-variable] float sminlo, tolmul; ^~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh 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/bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasq1.lo ../../../../src/gmxlib/gmx_lapack/slasq1.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasq1.c -fPIC -DPIC -o .libs/slasq1.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sorm2r.lo ../../../../src/gmxlib/gmx_lapack/sorm2r.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sorm2r.c -fPIC -DPIC -o .libs/sorm2r.o ../../../../src/gmxlib/gmx_lapack/sorm2r.c: In function 'sorm2r_': ../../../../src/gmxlib/gmx_lapack/sorm2r.c:19:42: warning: variable 'nq' set but not used [-Wunused-but-set-variable] int i__, i1, i2, i3, ic, jc, mi, ni, nq; ^~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o strti2.lo 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../../../../src/gmxlib/gmx_lapack/slarft.c -fPIC -DPIC -o .libs/slarft.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slagts.lo ../../../../src/gmxlib/gmx_lapack/slagts.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slagts.c -fPIC -DPIC -o .libs/slagts.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slaev2.lo ../../../../src/gmxlib/gmx_lapack/slaev2.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slaev2.c -fPIC -DPIC -o .libs/slaev2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slascl.lo ../../../../src/gmxlib/gmx_lapack/slascl.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slascl.c -fPIC -DPIC -o .libs/slascl.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sgesdd.lo ../../../../src/gmxlib/gmx_lapack/sgesdd.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgesdd.c -fPIC -DPIC -o .libs/sgesdd.o ../../../../src/gmxlib/gmx_lapack/sgesdd.c: In function 'sgesdd_': ../../../../src/gmxlib/gmx_lapack/sgesdd.c:40:9: warning: variable 'wntqas' set but not used [-Wunused-but-set-variable] int wntqas, lquery; ^~~~~~ ../../../../src/gmxlib/gmx_lapack/sgesdd.c:38:9: warning: variable 'minwrk' set but not used [-Wunused-but-set-variable] int minwrk, ldwrku, maxwrk, ldwkvt; ^~~~~~ ../../../../src/gmxlib/gmx_lapack/sgesdd.c:35:16: warning: variable 'wntqo' set but not used [-Wunused-but-set-variable] int wntqn, wntqo, wntqs; ^~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasq5.lo ../../../../src/gmxlib/gmx_lapack/slasq5.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasq5.c -fPIC -DPIC -o .libs/slasq5.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasd8.lo ../../../../src/gmxlib/gmx_lapack/slasd8.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasd8.c -fPIC -DPIC -o .libs/slasd8.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sormql.lo ../../../../src/gmxlib/gmx_lapack/sormql.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sormql.c -fPIC -DPIC -o .libs/sormql.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasrt2.lo ../../../../src/gmxlib/gmx_lapack/slasrt2.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasrt2.c -fPIC -DPIC -o .libs/slasrt2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slansy.lo ../../../../src/gmxlib/gmx_lapack/slansy.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slansy.c -fPIC -DPIC -o .libs/slansy.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ilasrt2.lo ../../../../src/gmxlib/gmx_lapack/ilasrt2.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/ilasrt2.c -fPIC -DPIC -o .libs/ilasrt2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ssyevr.lo ../../../../src/gmxlib/gmx_lapack/ssyevr.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/ssyevr.c -fPIC -DPIC -o .libs/ssyevr.o ../../../../src/gmxlib/gmx_lapack/ssyevr.c: In function 'ssyevr_': ../../../../src/gmxlib/gmx_lapack/ssyevr.c:36:11: warning: variable 'abstll' set but not used [-Wunused-but-set-variable] float abstll, bignum; ^~~~~~ ../../../../src/gmxlib/gmx_lapack/ssyevr.c:33:17: warning: variable 'ieeeok' set but not used [-Wunused-but-set-variable] int iscale, ieeeok, indibl, indifl; ^~~~~~ ../../../../src/gmxlib/gmx_lapack/ssyevr.c:21:21: warning: variable 'vuu' set but not used [-Wunused-but-set-variable] float eps, vll, vuu, tmp1; ^~~ ../../../../src/gmxlib/gmx_lapack/ssyevr.c:21:16: warning: variable 'vll' set but not used [-Wunused-but-set-variable] float eps, vll, vuu, tmp1; ^~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slarrfx.lo ../../../../src/gmxlib/gmx_lapack/slarrfx.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarrfx.c -fPIC -DPIC -o .libs/slarrfx.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ssteqr.lo ../../../../src/gmxlib/gmx_lapack/ssteqr.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/ssteqr.c -fPIC -DPIC -o .libs/ssteqr.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slar1vx.lo ../../../../src/gmxlib/gmx_lapack/slar1vx.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slar1vx.c -fPIC -DPIC -o .libs/slar1vx.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slarrbx.lo ../../../../src/gmxlib/gmx_lapack/slarrbx.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarrbx.c -fPIC -DPIC -o .libs/slarrbx.o ../../../../src/gmxlib/gmx_lapack/slarrbx.c: In function 'slarrbx_': ../../../../src/gmxlib/gmx_lapack/slarrbx.c:36:32: warning: variable 'error' set but not used [-Wunused-but-set-variable] float right, width, dplus, error; ^~~~~ ../../../../src/gmxlib/gmx_lapack/slarrbx.c:34:11: warning: variable 'eps' set but not used [-Wunused-but-set-variable] float eps, tmp, left; ^~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slarrvx.lo ../../../../src/gmxlib/gmx_lapack/slarrvx.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarrvx.c -fPIC -DPIC -o .libs/slarrvx.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slarrex.lo ../../../../src/gmxlib/gmx_lapack/slarrex.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarrex.c -fPIC -DPIC -o .libs/slarrex.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o liblapack.la dbdsdc.lo dgetf2.lo dlamrg.lo dlarnv.lo dlasd0.lo dlasda.lo dlasq6.lo dorgl2.lo dormqr.lo dbdsqr.lo dgetrf.lo dlange.lo dlasd1.lo dtrtri.lo dlasdq.lo dlasr.lo dorglq.lo dormtr.lo dgebd2.lo dlabrd.lo dlanst.lo dlasd2.lo dlasdt.lo dlasrt.lo dorgqr.lo dstebz.lo dgebrd.lo dsytrd.lo dlacpy.lo dlapy2.lo dlasd3.lo dlaset.lo dlassq.lo dorm2l.lo dgetrs.lo dstegr.lo dgelq2.lo dlae2.lo dlasd4.lo dlasq1.lo dtrti2.lo dgetri.lo dlasv2.lo dorm2r.lo dstein.lo dgelqf.lo dlaebz.lo dlarf.lo dlartg.lo dlasd5.lo dlasq2.lo dlaswp.lo dormbr.lo dsterf.lo dgeqr2.lo dlaed6.lo dlarfb.lo dlaruv.lo dlasd6.lo dlasq3.lo dlatrd.lo dorml2.lo dstevr.lo dgeqrf.lo dlagtf.lo dlarfg.lo dlas2.lo dlasd7.lo dlasq4.lo dorg2r.lo dormlq.lo dsytd2.lo dgesdd.lo dlagts.lo dlarft.lo dlascl.lo dlasd8.lo dlasq5.lo dorgbr.lo dormql.lo dlaev2.lo dsteqr.lo dsyevr.lo dlasrt2.lo dlansy.lo dlar1vx.lo dlarrbx.lo dlarrex.lo dlarrfx.lo dlarrvx.lo sbdsdc.lo sgetf2.lo slamrg.lo slarnv.lo slasd0.lo slasda.lo slasq6.lo sorgl2.lo sormqr.lo sbdsqr.lo sgetrf.lo slange.lo slasd1.lo ssytrd.lo slasdq.lo slasr.lo sorglq.lo sormtr.lo sgebd2.lo slabrd.lo slanst.lo slasd2.lo slasdt.lo slasrt.lo sorgqr.lo sstebz.lo sgebrd.lo sgetrs.lo slacpy.lo slapy2.lo slasd3.lo slaset.lo slassq.lo sorm2l.lo sgetri.lo sstegr.lo sgelq2.lo slae2.lo slasd4.lo slasq1.lo strti2.lo strtri.lo slasv2.lo sorm2r.lo sstein.lo sgelqf.lo slaebz.lo slarf.lo slartg.lo slasd5.lo slasq2.lo slaswp.lo sormbr.lo ssterf.lo sgeqr2.lo slaed6.lo slarfb.lo slaruv.lo slasd6.lo slasq3.lo slatrd.lo sorml2.lo sstevr.lo sgeqrf.lo slagtf.lo slarfg.lo slas2.lo slasd7.lo slasq4.lo sorg2r.lo sormlq.lo ssytd2.lo sgesdd.lo slagts.lo slarft.lo slascl.lo slasd8.lo slasq5.lo sorgbr.lo sormql.lo slaev2.lo ssteqr.lo ssyevr.lo slasrt2.lo slansy.lo slar1vx.lo slarrbx.lo slarrex.lo slarrfx.lo slarrvx.lo ilasrt2.lo -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath ar cru .libs/liblapack.a .libs/dbdsdc.o .libs/dgetf2.o .libs/dlamrg.o .libs/dlarnv.o .libs/dlasd0.o .libs/dlasda.o .libs/dlasq6.o .libs/dorgl2.o .libs/dormqr.o .libs/dbdsqr.o .libs/dgetrf.o .libs/dlange.o .libs/dlasd1.o .libs/dtrtri.o .libs/dlasdq.o .libs/dlasr.o .libs/dorglq.o .libs/dormtr.o .libs/dgebd2.o .libs/dlabrd.o .libs/dlanst.o .libs/dlasd2.o .libs/dlasdt.o .libs/dlasrt.o .libs/dorgqr.o .libs/dstebz.o .libs/dgebrd.o .libs/dsytrd.o .libs/dlacpy.o .libs/dlapy2.o .libs/dlasd3.o .libs/dlaset.o .libs/dlassq.o .libs/dorm2l.o .libs/dgetrs.o .libs/dstegr.o .libs/dgelq2.o .libs/dlae2.o .libs/dlasd4.o .libs/dlasq1.o .libs/dtrti2.o .libs/dgetri.o .libs/dlasv2.o .libs/dorm2r.o .libs/dstein.o .libs/dgelqf.o .libs/dlaebz.o .libs/dlarf.o .libs/dlartg.o .libs/dlasd5.o .libs/dlasq2.o .libs/dlaswp.o .libs/dormbr.o .libs/dsterf.o .libs/dgeqr2.o .libs/dlaed6.o .libs/dlarfb.o .libs/dlaruv.o .libs/dlasd6.o .libs/dlasq3.o .libs/dlatrd.o .libs/dorml2.o .libs/dstevr.o .libs/dgeqrf.o .libs/dlagtf.o .libs/dlarfg.o .libs/dlas2.o .libs/dlasd7.o .libs/dlasq4.o .libs/dorg2r.o .libs/dormlq.o .libs/dsytd2.o .libs/dgesdd.o .libs/dlagts.o .libs/dlarft.o .libs/dlascl.o .libs/dlasd8.o .libs/dlasq5.o .libs/dorgbr.o .libs/dormql.o .libs/dlaev2.o .libs/dsteqr.o .libs/dsyevr.o .libs/dlasrt2.o .libs/dlansy.o .libs/dlar1vx.o .libs/dlarrbx.o .libs/dlarrex.o .libs/dlarrfx.o .libs/dlarrvx.o .libs/sbdsdc.o .libs/sgetf2.o .libs/slamrg.o .libs/slarnv.o .libs/slasd0.o .libs/slasda.o .libs/slasq6.o .libs/sorgl2.o .libs/sormqr.o .libs/sbdsqr.o .libs/sgetrf.o .libs/slange.o .libs/slasd1.o .libs/ssytrd.o .libs/slasdq.o .libs/slasr.o .libs/sorglq.o .libs/sormtr.o .libs/sgebd2.o .libs/slabrd.o .libs/slanst.o .libs/slasd2.o .libs/slasdt.o .libs/slasrt.o .libs/sorgqr.o .libs/sstebz.o .libs/sgebrd.o .libs/sgetrs.o .libs/slacpy.o .libs/slapy2.o .libs/slasd3.o .libs/slaset.o .libs/slassq.o .libs/sorm2l.o .libs/sgetri.o .libs/sstegr.o .libs/sgelq2.o .libs/slae2.o .libs/slasd4.o .libs/slasq1.o .libs/strti2.o .libs/strtri.o .libs/slasv2.o .libs/sorm2r.o .libs/sstein.o .libs/sgelqf.o .libs/slaebz.o .libs/slarf.o .libs/slartg.o .libs/slasd5.o .libs/slasq2.o .libs/slaswp.o .libs/sormbr.o .libs/ssterf.o .libs/sgeqr2.o .libs/slaed6.o .libs/slarfb.o .libs/slaruv.o .libs/slasd6.o .libs/slasq3.o .libs/slatrd.o .libs/sorml2.o .libs/sstevr.o .libs/sgeqrf.o .libs/slagtf.o .libs/slarfg.o .libs/slas2.o .libs/slasd7.o .libs/slasq4.o .libs/sorg2r.o .libs/sormlq.o .libs/ssytd2.o .libs/sgesdd.o .libs/slagts.o .libs/slarft.o .libs/slascl.o .libs/slasd8.o .libs/slasq5.o .libs/sorgbr.o .libs/sormql.o .libs/slaev2.o .libs/ssteqr.o .libs/ssyevr.o .libs/slasrt2.o .libs/slansy.o .libs/slar1vx.o .libs/slarrbx.o .libs/slarrex.o .libs/slarrfx.o .libs/slarrvx.o .libs/ilasrt2.o ranlib .libs/liblapack.a creating liblapack.la (cd .libs && rm -f liblapack.la && ln -s ../liblapack.la liblapack.la) make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ffscanf.lo ../../../src/gmxlib/ffscanf.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/ffscanf.c -fPIC -DPIC -o .libs/ffscanf.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o calcgrid.lo ../../../src/gmxlib/calcgrid.c mkdir .libs mkdir: cannot create directory '.libs': File exists x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/calcgrid.c -fPIC -DPIC -o .libs/calcgrid.o ../../../src/gmxlib/calcgrid.c: In function 'calc_grid': ../../../src/gmxlib/calcgrid.c:89:8: warning: unused variable 'tmp' [-Wunused-variable] real tmp[3]; ^~~ ../../../src/gmxlib/calcgrid.c:86:10: warning: unused variable 'j' [-Wunused-variable] int i,j,nmin[DIM]; ^ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o copyrite.lo ../../../src/gmxlib/copyrite.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/copyrite.c -fPIC -DPIC -o .libs/copyrite.o ../../../src/gmxlib/copyrite.c: In function 'cool_quote': ../../../src/gmxlib/copyrite.c:181:9: warning: unused variable 's' [-Wunused-variable] char *s,*ptr; ^ ../../../src/gmxlib/copyrite.c: In function 'please_cite': ../../../src/gmxlib/copyrite.c:469:8: warning: unused variable 'j' [-Wunused-variable] int j,index; ^ In file included from ../../../include/statutil.h:51, from ../../../src/gmxlib/copyrite.c:53: At top level: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o calch.lo ../../../src/gmxlib/calch.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/calch.c -fPIC -DPIC -o .libs/calch.o ../../../src/gmxlib/calch.c: In function 'gen_waterhydrogen': ../../../src/gmxlib/calch.c:81:14: warning: unused variable 'kkk' [-Wunused-variable] rvec kkk; ^~~ In file included from ../../../src/gmxlib/calch.c:43: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../src/gmxlib/calch.c:42: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o 3dview.lo ../../../src/gmxlib/3dview.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/3dview.c -fPIC -DPIC -o .libs/3dview.o ../../../src/gmxlib/3dview.c: In function 'reset_view': ../../../src/gmxlib/3dview.c:282:8: warning: unused variable 'i' [-Wunused-variable] int i; ^ In file included from ../../../src/gmxlib/3dview.c:47: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/gmxlib/3dview.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o atomprop.lo ../../../src/gmxlib/atomprop.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/atomprop.c -fPIC -DPIC -o .libs/atomprop.o In file included from ../../../src/gmxlib/atomprop.c:52: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/gmxlib/atomprop.c:45: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o disre.lo ../../../src/gmxlib/disre.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/disre.c -fPIC -DPIC -o .libs/disre.o ../../../src/gmxlib/disre.c: In function 'init_disres': ../../../src/gmxlib/disre.c:62:19: warning: variable 'ip' set but not used [-Wunused-but-set-variable] t_iparams *ip; ^~ ../../../src/gmxlib/disre.c:61:26: warning: unused variable 'i' [-Wunused-variable] int fa,nmol,i,npair,np; ^ ../../../src/gmxlib/disre.c: In function 'calc_disres_R_6': ../../../src/gmxlib/disre.c:217:23: warning: unused variable 'dt' [-Wunused-variable] ivec it,jt,dt; ^~ ../../../src/gmxlib/disre.c:217:20: warning: unused variable 'jt' [-Wunused-variable] ivec it,jt,dt; ^~ ../../../src/gmxlib/disre.c:217:17: warning: unused variable 'it' [-Wunused-variable] ivec it,jt,dt; ^~ ../../../src/gmxlib/disre.c:212:37: warning: unused variable 'm' [-Wunused-variable] int fa,res,i,pair,ki,kj,m; ^ ../../../src/gmxlib/disre.c:212:34: warning: unused variable 'kj' [-Wunused-variable] int fa,res,i,pair,ki,kj,m; ^~ ../../../src/gmxlib/disre.c:212:31: warning: unused variable 'ki' [-Wunused-variable] int fa,res,i,pair,ki,kj,m; ^~ ../../../src/gmxlib/disre.c:212:24: warning: unused variable 'i' [-Wunused-variable] int fa,res,i,pair,ki,kj,m; ^ ../../../src/gmxlib/disre.c: In function 'ta_disres': ../../../src/gmxlib/disre.c:338:20: warning: unused variable 'jt' [-Wunused-variable] ivec it,jt,dt; ^~ ../../../src/gmxlib/disre.c:338:17: warning: unused variable 'it' [-Wunused-variable] ivec it,jt,dt; ^~ In file included from ../../../src/gmxlib/disre.c:52: At top level: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/gmxlib/disre.c:47: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/gmxlib/disre.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o do_fit.lo ../../../src/gmxlib/do_fit.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/do_fit.c -fPIC -DPIC -o .libs/do_fit.o ../../../src/gmxlib/do_fit.c: In function 'calc_fit_R': ../../../src/gmxlib/do_fit.c:103:18: warning: unused variable 'm' [-Wunused-variable] int c,r,n,j,m,i,irot,s; ^ ../../../src/gmxlib/do_fit.c: In function 'do_fit_ndim': ../../../src/gmxlib/do_fit.c:214:10: warning: unused variable 'i' [-Wunused-variable] int i,j,m,r,c; ^ In file included from ../../../src/gmxlib/do_fit.c:44: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../src/gmxlib/do_fit.c:40: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o futil.lo ../../../src/gmxlib/futil.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/futil.c -fPIC -DPIC -o .libs/futil.o ../../../src/gmxlib/futil.c: In function 'ffopen': ../../../src/gmxlib/futil.c:287:18: warning: unused variable 'bf' [-Wunused-variable] char buf[256],*bf,*bufsize=0,*ptr; ^~ ../../../src/gmxlib/futil.c: In function 'get_libdir': ../../../src/gmxlib/futil.c:397:22: warning: variable 'pdum' set but not used [-Wunused-but-set-variable] char *dir,*ptr,*s,*pdum; ^~~~ ../../../src/gmxlib/futil.c:395:8: warning: unused variable 'test_file' [-Wunused-variable] char test_file[MAX_PATHBUF]; ^~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/gmxlib/futil.c:53: At top level: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ ../../../src/gmxlib/futil.c: In function 'ffopen': ../../../src/gmxlib/futil.c:187:28: warning: '%s' directive writing up to 255 bytes into a region of size 244 [-Wformat-overflow=] sprintf(buf,"gunzip -c < %s",fn); ^~ ../../../src/gmxlib/futil.c:329:12: ff=gunzip(buf,mode); ~~~ In file included from /usr/include/stdio.h:862, from ../../../src/gmxlib/futil.c:41: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 13 and 268 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../src/gmxlib/futil.c:173:32: warning: '%s' directive writing up to 255 bytes into a region of size 240 [-Wformat-overflow=] sprintf(buf,"uncompress -c < %s",fn); ^~ ../../../src/gmxlib/futil.c:324:21: ff=uncompress(buf,mode); ~~~ In file included from /usr/include/stdio.h:862, from ../../../src/gmxlib/futil.c:41: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 17 and 272 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ewald_util.lo ../../../src/gmxlib/ewald_util.c mkdir .libs x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/ewald_util.c -fPIC -DPIC -o .libs/ewald_util.o In file included from ../../../src/gmxlib/ewald_util.c:43: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/gmxlib/ewald_util.c:43: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o enxio.lo ../../../src/gmxlib/enxio.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/enxio.c -fPIC -DPIC -o .libs/enxio.o ../../../src/gmxlib/enxio.c: In function 'empty_file': ../../../src/gmxlib/enxio.c:220:8: warning: variable 'ret' set but not used [-Wunused-but-set-variable] int ret; ^~~ ../../../src/gmxlib/enxio.c: In function 'get_enx_state': ../../../src/gmxlib/enxio.c:443:16: warning: unused variable 'pcouplmu_nm' [-Wunused-variable] static char *pcouplmu_nm[] = { ^~~~~~~~~~~ At top level: ../../../src/gmxlib/enxio.c:443:16: warning: 'pcouplmu_nm' defined but not used [-Wunused-variable] In file included from ../../../src/gmxlib/enxio.c:46: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/gmxlib/enxio.c:46: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_fatal.lo ../../../src/gmxlib/gmx_fatal.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/gmx_fatal.c -fPIC -DPIC -o .libs/gmx_fatal.o ../../../src/gmxlib/gmx_fatal.c:226:13: warning: 'fatal_error' defined but not used [-Wunused-function] static void fatal_error(int f_errno,const char *fmt,...) ^~~~~~~~~~~ ../../../src/gmxlib/gmx_fatal.c:115:13: warning: 'bputi' defined but not used [-Wunused-function] static void bputi(char *msg,int *len,int val,int radix,int fld,bool bNeg) ^~~~~ In file included from ../../../src/gmxlib/gmx_fatal.c:50: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/gmxlib/gmx_fatal.c:46: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o cinvsqrtdata.lo ../../../src/gmxlib/cinvsqrtdata.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/cinvsqrtdata.c -fPIC -DPIC -o .libs/cinvsqrtdata.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o filenm.lo ../../../src/gmxlib/filenm.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/filenm.c -fPIC -DPIC -o .libs/filenm.o ../../../src/gmxlib/filenm.c: In function 'add_suffix_to_output_names': ../../../src/gmxlib/filenm.c:811:12: warning: unused variable 'pos' [-Wunused-variable] int i,j,pos; ^~~ In file included from ../../../include/wman.h:44, from ../../../src/gmxlib/filenm.c:48: At top level: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ ../../../src/gmxlib/filenm.c: In function 'add_suffix_to_output_names': ../../../src/gmxlib/filenm.c:825:27: warning: '.' directive writing 1 byte into a region of size between 0 and 4095 [-Wformat-overflow=] sprintf(newname,"%s.%s.%s",buf,suffix,extpos+1); ^ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../src/gmxlib/filenm.c:41: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 3 or more bytes (assuming 4098) into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ifunc.lo ../../../src/gmxlib/ifunc.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/ifunc.c -fPIC -DPIC -o .libs/ifunc.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o invblock.lo ../../../src/gmxlib/invblock.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/invblock.c -fPIC -DPIC -o .libs/invblock.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o macros.lo ../../../src/gmxlib/macros.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/macros.c -fPIC -DPIC -o .libs/macros.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o checkpoint.lo ../../../src/gmxlib/checkpoint.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/checkpoint.c -fPIC -DPIC -o .libs/checkpoint.o ../../../src/gmxlib/checkpoint.c: In function 'do_cpte_ints': ../../../src/gmxlib/checkpoint.c:305:16: warning: unused variable 'i' [-Wunused-variable] int nf,dt,i; ^ ../../../src/gmxlib/checkpoint.c: In function 'do_cpte_doubles': ../../../src/gmxlib/checkpoint.c:371:16: warning: unused variable 'i' [-Wunused-variable] int nf,dt,i; ^ ../../../src/gmxlib/checkpoint.c: In function 'do_cpt_header': ../../../src/gmxlib/checkpoint.c:534:10: warning: unused variable 'i' [-Wunused-variable] int i; ^ ../../../src/gmxlib/checkpoint.c: In function 'write_checkpoint': ../../../src/gmxlib/checkpoint.c:837:30: warning: unused variable 'i' [-Wunused-variable] int flags_eks,flags_enh,i; ^ ../../../src/gmxlib/checkpoint.c:833:29: warning: unused variable 'flag_64bit' [-Wunused-variable] int nppnodes,npmenodes,flag_64bit; ^~~~~~~~~~ ../../../src/gmxlib/checkpoint.c: In function 'read_checkpoint': ../../../src/gmxlib/checkpoint.c:1254:40: warning: left-hand operand of comma expression has no effect [-Wunused-value] if (outputfiles[i].filename,outputfiles[i].offset < 0) ^ ../../../src/gmxlib/checkpoint.c:1036:7: warning: unused variable 'filename' [-Wunused-variable] char filename[STRLEN]; ^~~~~~~~ ../../../src/gmxlib/checkpoint.c:1033:15: warning: unused variable 'j' [-Wunused-variable] int fp,i,j; ^ ../../../src/gmxlib/checkpoint.c: In function 'list_checkpoint': ../../../src/gmxlib/checkpoint.c:1421:12: warning: unused variable 'j' [-Wunused-variable] int i,j; ^ ../../../src/gmxlib/checkpoint.c:1421:10: warning: unused variable 'i' [-Wunused-variable] int i,j; ^ ../../../src/gmxlib/checkpoint.c:1420:10: warning: unused variable 'indent' [-Wunused-variable] int indent; ^~~~~~ In file included from ../../../src/gmxlib/checkpoint.c:34: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/gmxlib/checkpoint.c:34: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/gmxlib/checkpoint.c:32: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gbutil.lo ../../../src/gmxlib/gbutil.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/gbutil.c -fPIC -DPIC -o .libs/gbutil.o In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/gmxlib/gbutil.c:45: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/gmxlib/gbutil.c:43: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/gmxlib/gbutil.c:43: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sparsematrix.lo ../../../src/gmxlib/sparsematrix.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/sparsematrix.c -fPIC -DPIC -o .libs/sparsematrix.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o maths.lo ../../../src/gmxlib/maths.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/maths.c -fPIC -DPIC -o .libs/maths.o In file included from ../../../src/gmxlib/maths.c:43: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o confio.lo ../../../src/gmxlib/confio.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/confio.c -fPIC -DPIC -o .libs/confio.o ../../../src/gmxlib/confio.c: In function 'read_espresso_conf': ../../../src/gmxlib/confio.c:448:21: warning: unused variable 'npar' [-Wunused-variable] int natoms,level,npar,r,nprop,p,i,m; ^~~~ ../../../src/gmxlib/confio.c:448:8: warning: unused variable 'natoms' [-Wunused-variable] int natoms,level,npar,r,nprop,p,i,m; ^~~~~~ ../../../src/gmxlib/confio.c: In function 'read_stx_conf': ../../../src/gmxlib/confio.c:1298:14: warning: unused variable 'd' [-Wunused-variable] real d,r1,r2; ^ ../../../src/gmxlib/confio.c:1293:14: warning: unused variable 'buf' [-Wunused-variable] char buf[256]; ^~~ At top level: ../../../src/gmxlib/confio.c:864:13: warning: 'get_conf' defined but not used [-Wunused-function] static void get_conf(FILE *in, char *title, int *natoms, ^~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/gmxlib/confio.c:59: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/gmxlib/confio.c:57: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/gmxlib/confio.c:54: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/gmxlib/confio.c:49: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/gmxlib/confio.c:49: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ ../../../src/gmxlib/confio.c: In function 'write_hconf_box': ../../../src/gmxlib/confio.c:983:20: warning: '%d' directive writing between 2 and 10 bytes into a region of size between 7 and 75 [-Wformat-overflow=] sprintf(format,"%%%d.%df%%%d.%df%%%d.%df" ^~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../src/gmxlib/confio.c:984:17: note: format string is defined here "%%%d.%df%%%d.%df%%%d.%df%%%d.%df%%%d.%df%%%d.%df\n", ^~ ../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [10, 2147483647] sprintf(format,"%%%d.%df%%%d.%df%%%d.%df" ^~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [5, 2147483647] ../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [10, 2147483647] ../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [5, 2147483647] ../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [10, 2147483647] ../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [5, 2147483647] ../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [10, 2147483647] ../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [5, 2147483647] ../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [10, 2147483647] ../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [5, 2147483647] In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../src/gmxlib/confio.c:41: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 56 and 209 bytes into a destination of size 100 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o main.lo ../../../src/gmxlib/main.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/main.c -fPIC -DPIC -o .libs/main.o ../../../src/gmxlib/main.c: In function 'par_fn': ../../../src/gmxlib/main.c:68:7: warning: unused variable 'n' [-Wunused-variable] int n; ^ ../../../src/gmxlib/main.c: In function 'gmx_log_open': ../../../src/gmxlib/main.c:124:12: warning: unused variable 'testlen' [-Wunused-variable] int len,testlen,pid; ^~~~~~~ ../../../src/gmxlib/main.c: In function 'init_multisystem': ../../../src/gmxlib/main.c:235:8: warning: unused variable 'rank' [-Wunused-variable] int *rank; ^~~~ ../../../src/gmxlib/main.c: In function 'init_par': ../../../src/gmxlib/main.c:309:13: warning: unused variable 'i' [-Wunused-variable] int i; ^ ../../../src/gmxlib/main.c:308:15: warning: variable 'argv' set but not used [-Wunused-but-set-variable] char **argv; ^~~~ In file included from ../../../include/pull.h:44, from ../../../include/mdrun.h:56, from ../../../src/gmxlib/main.c:52: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../include/pull.h:44, from ../../../include/mdrun.h:56, from ../../../src/gmxlib/main.c:52: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/mdrun.h:50, from ../../../src/gmxlib/main.c:52: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o mtxio.lo ../../../src/gmxlib/mtxio.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/mtxio.c -fPIC -DPIC -o .libs/mtxio.o ../../../src/gmxlib/mtxio.c: In function 'gmx_mtxio_write': ../../../src/gmxlib/mtxio.c:90:13: warning: variable 'xd' set but not used [-Wunused-but-set-variable] XDR * xd; ^~ ../../../src/gmxlib/mtxio.c: In function 'gmx_mtxio_read': ../../../src/gmxlib/mtxio.c:164:13: warning: variable 'xd' set but not used [-Wunused-but-set-variable] XDR * xd; ^~ In file included from ../../../src/gmxlib/mtxio.c:48: At top level: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmxfio.lo ../../../src/gmxlib/gmxfio.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/gmxfio.c -fPIC -DPIC -o .libs/gmxfio.o ../../../src/gmxlib/gmxfio.c: In function 'gmx_fio_fopen': ../../../src/gmxlib/gmxfio.c:803:8: warning: unused variable 'fp' [-Wunused-variable] FILE *fp; ^~ ../../../src/gmxlib/gmxfio.c: In function 'gmx_fio_get_output_file_positions': ../../../src/gmxlib/gmxfio.c:885:27: warning: unused variable 'pos' [-Wunused-variable] long pos; ^~~ ../../../src/gmxlib/gmxfio.c:884:34: warning: unused variable 'pos_lo' [-Wunused-variable] int pos_hi,pos_lo; ^~~~~~ ../../../src/gmxlib/gmxfio.c:884:27: warning: unused variable 'pos_hi' [-Wunused-variable] int pos_hi,pos_lo; ^~~~~~ ../../../src/gmxlib/gmxfio.c:883:36: warning: unused variable 'rc' [-Wunused-variable] int i,nfiles,rc,nalloc; ^~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o names.lo ../../../src/gmxlib/names.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/names.c -fPIC -DPIC -o .libs/names.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o network.lo ../../../src/gmxlib/network.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/network.c -fPIC -DPIC -o .libs/network.o ../../../src/gmxlib/network.c: In function 'gmx_mpi_initialized': ../../../src/gmxlib/network.c:57:7: warning: unused variable 'n' [-Wunused-variable] int n; ^ ../../../src/gmxlib/network.c: In function 'gmx_setup_nodecomm': ../../../src/gmxlib/network.c:245:40: warning: unused variable 'ni' [-Wunused-variable] int n,rank,resultlen,hostnum,i,j,ng,ni; ^~ ../../../src/gmxlib/network.c:245:37: warning: unused variable 'ng' [-Wunused-variable] int n,rank,resultlen,hostnum,i,j,ng,ni; ^~ ../../../src/gmxlib/network.c:245:35: warning: unused variable 'j' [-Wunused-variable] int n,rank,resultlen,hostnum,i,j,ng,ni; ^ ../../../src/gmxlib/network.c:245:33: warning: unused variable 'i' [-Wunused-variable] int n,rank,resultlen,hostnum,i,j,ng,ni; ^ ../../../src/gmxlib/network.c:245:25: warning: unused variable 'hostnum' [-Wunused-variable] int n,rank,resultlen,hostnum,i,j,ng,ni; ^~~~~~~ ../../../src/gmxlib/network.c:245:15: warning: unused variable 'resultlen' [-Wunused-variable] int n,rank,resultlen,hostnum,i,j,ng,ni; ^~~~~~~~~ ../../../src/gmxlib/network.c:245:10: warning: unused variable 'rank' [-Wunused-variable] int n,rank,resultlen,hostnum,i,j,ng,ni; ^~~~ ../../../src/gmxlib/network.c:245:8: warning: unused variable 'n' [-Wunused-variable] int n,rank,resultlen,hostnum,i,j,ng,ni; ^ ../../../src/gmxlib/network.c: In function 'gmx_finalize': ../../../src/gmxlib/network.c:522:7: warning: unused variable 'ret' [-Wunused-variable] int ret; ^~~ In file included from ../../../include/statutil.h:51, from ../../../src/gmxlib/network.c:46: At top level: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/gmxlib/network.c:45: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nrama.lo ../../../src/gmxlib/nrama.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/nrama.c -fPIC -DPIC -o .libs/nrama.o ../../../src/gmxlib/nrama.c: In function 'get_dih2': ../../../src/gmxlib/nrama.c:179:11: warning: unused variable 'found' [-Wunused-variable] int found,**ff,thisff[NPP]; ^~~~~ ../../../src/gmxlib/nrama.c: In function 'init_rama': ../../../src/gmxlib/nrama.c:307:10: warning: unused variable 'ePBC' [-Wunused-variable] int ePBC; ^~~~ At top level: ../../../src/gmxlib/nrama.c:176:13: warning: 'get_dih2' defined but not used [-Wunused-function] static void get_dih2(t_xrama *xr,t_functype functype[], ^~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../include/nrama.h:45, from ../../../src/gmxlib/nrama.c:49: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ ../../../src/gmxlib/nrama.c: In function 'init_rama': ../../../src/gmxlib/nrama.c:125:21: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(buf,"%s-%d",*atoms->resname[atoms->atom[ff[1]].resnr], ^ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../src/gmxlib/nrama.c:41: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 3 or more bytes (assuming 13) into a destination of size 12 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o index.lo ../../../src/gmxlib/index.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/index.c -fPIC -DPIC -o .libs/index.o ../../../src/gmxlib/index.c: In function 'analyse_prot': ../../../src/gmxlib/index.c:298:15: warning: unused variable 'nnpres' [-Wunused-variable] int nra,nnpres,npres; ^~~~~~ ../../../src/gmxlib/index.c: In function 'init_index': ../../../src/gmxlib/index.c:532:19: warning: variable 'nread' set but not used [-Wunused-but-set-variable] int i,j,ng,nread; ^~~~~ In file included from ../../../src/gmxlib/index.c:51: At top level: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/gmxlib/index.c:48: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o mtop_util.lo ../../../src/gmxlib/mtop_util.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/mtop_util.c -fPIC -DPIC -o .libs/mtop_util.o ../../../src/gmxlib/mtop_util.c: In function 'gmx_mtop_atomnr_to_molblock_ind': ../../../src/gmxlib/mtop_util.c:105:14: warning: unused variable 'atoms' [-Wunused-variable] t_atoms *atoms; ^~~~~ ../../../src/gmxlib/mtop_util.c: In function 'gmx_mtop_atominfo_global': ../../../src/gmxlib/mtop_util.c:132:21: warning: unused variable 'molb' [-Wunused-variable] gmx_molblock_t *molb; ^~~~ ../../../src/gmxlib/mtop_util.c: In function 'gmx_mtop_ilistloop_all_next': ../../../src/gmxlib/mtop_util.c:384:21: warning: unused variable 'molb' [-Wunused-variable] gmx_molblock_t *molb; ^~~~ ../../../src/gmxlib/mtop_util.c: In function 'gmx_mtop_global_cgs': ../../../src/gmxlib/mtop_util.c:438:14: warning: unused variable 'atoms' [-Wunused-variable] t_atoms *atoms; ^~~~~ ../../../src/gmxlib/mtop_util.c: In function 'gen_local_top': ../../../src/gmxlib/mtop_util.c:669:31: warning: unused variable 'mt' [-Wunused-variable] int mb,srcnr,destnr,ftype,mt,natoms,nposre_old; ^~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o orires.lo ../../../src/gmxlib/orires.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/orires.c -fPIC -DPIC -o .libs/orires.o ../../../src/gmxlib/orires.c: In function 'init_orires': ../../../src/gmxlib/orires.c:59:26: warning: unused variable 'nr' [-Wunused-variable] int i,j,d,ex,nmol,nr,*nr_ex; ^~ In file included from ../../../src/gmxlib/orires.c:49: At top level: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/gmxlib/orires.c:43: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/gmxlib/orires.c:43: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o mshift.lo ../../../src/gmxlib/mshift.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/mshift.c -fPIC -DPIC -o .libs/mshift.o ../../../src/gmxlib/mshift.c: In function 'compact_graph': ../../../src/gmxlib/mshift.c:243:12: warning: unused variable 'e' [-Wunused-variable] atom_id *e; ^ ../../../src/gmxlib/mshift.c:242:9: warning: unused variable 'j' [-Wunused-variable] int i,j,n,max_nedge; ^ ../../../src/gmxlib/mshift.c: In function 'mk_graph_ilist': ../../../src/gmxlib/mshift.c:307:13: warning: variable 'nbtot' set but not used [-Wunused-but-set-variable] int i,nbtot; ^~~~~ In file included from ../../../src/gmxlib/mshift.c:46: At top level: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/gmxlib/mshift.c:44: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/gmxlib/mshift.c:44: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nrnb.lo ../../../src/gmxlib/nrnb.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/nrnb.c -fPIC -DPIC -o .libs/nrnb.o ../../../src/gmxlib/nrnb.c: In function 'pr_load': ../../../src/gmxlib/nrnb.c:473:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(j=0; (j 0)?"d":"",'X'+m); ^ In file included from /usr/include/stdio.h:862, from ../../../src/mdlib/pull.c:42: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 4 and 14 bytes into a destination of size 10 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o wnblist.lo ../../../src/mdlib/wnblist.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/wnblist.c -fPIC -DPIC -o .libs/wnblist.o ../../../src/mdlib/wnblist.c: In function 'read_nblist': ../../../src/mdlib/wnblist.c:135:27: warning: unused variable 'icmp' [-Wunused-variable] int i,ii,j,nnbl,full,icmp,nri,isolv; ^~~~ ../../../src/mdlib/wnblist.c:135:22: warning: unused variable 'full' [-Wunused-variable] int i,ii,j,nnbl,full,icmp,nri,isolv; ^~~~ ../../../src/mdlib/wnblist.c:135:17: warning: unused variable 'nnbl' [-Wunused-variable] int i,ii,j,nnbl,full,icmp,nri,isolv; ^~~~ ../../../src/mdlib/wnblist.c:134:26: warning: unused variable 'b2' [-Wunused-variable] char buf[256],b1[32],b2[32],solv[256],il_code[256]; ^~ ../../../src/mdlib/wnblist.c:134:19: warning: unused variable 'b1' [-Wunused-variable] char buf[256],b1[32],b2[32],solv[256],il_code[256]; ^~ ../../../src/mdlib/wnblist.c:133:10: warning: unused variable 'bNL' [-Wunused-variable] bool bNL; ^~~ In file included from ../../../src/mdlib/wnblist.c:44: At top level: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o wall.lo ../../../src/mdlib/wall.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/wall.c -fPIC -DPIC -o .libs/wall.o ../../../src/mdlib/wall.c: In function 'do_walls': ../../../src/mdlib/wall.c:107:47: warning: unused variable 'Heps' [-Wunused-variable] real tabscale,*VFtab,rt,eps,eps2,Yt,Ft,Geps,Heps,Heps2,Fp,VV,FF; ^~~~ ../../../src/mdlib/wall.c:103:50: warning: variable 'Fwall' set but not used [-Wunused-but-set-variable] real *nbfp,lamfac,fac_d[2],fac_r[2],Cd,Cr,Vtot,Fwall[2]; ^~~~~ In file included from ../../../src/mdlib/wall.c:48: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/mdlib/wall.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/mdlib/wall.c:45: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o tables.lo ../../../src/mdlib/tables.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/tables.c -fPIC -DPIC -o .libs/tables.o ../../../src/mdlib/tables.c: In function 'done_tabledata': ../../../src/mdlib/tables.c:470:7: warning: unused variable 'i' [-Wunused-variable] int i; ^ ../../../src/mdlib/tables.c: In function 'make_tables': ../../../src/mdlib/tables.c:835:17: warning: unused variable 'j' [-Wunused-variable] int i,j,k,nx,nx0,tabsel[etiNR]; ^ ../../../src/mdlib/tables.c: In function 'make_bonded_table': ../../../src/mdlib/tables.c:950:10: warning: variable 'start' set but not used [-Wunused-but-set-variable] double start; ^~~~~ At top level: ../../../src/mdlib/tables.c:155:13: warning: 'splint' defined but not used [-Wunused-function] static void splint(real xa[],real ya[],real y2a[], ^~~~~~ In file included from ../../../src/mdlib/tables.c:51: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../src/mdlib/tables.c:47: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/mdlib/tables.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o shellfc.lo ../../../src/mdlib/shellfc.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/shellfc.c -fPIC -DPIC -o .libs/shellfc.o ../../../src/mdlib/shellfc.c: In function 'predict_shells': ../../../src/mdlib/shellfc.c:115:18: warning: unused variable 'dt_3' [-Wunused-variable] real dt_1,dt_2,dt_3,fudge,tm,m1,m2,m3; ^~~~ ../../../src/mdlib/shellfc.c:115:13: warning: unused variable 'dt_2' [-Wunused-variable] real dt_1,dt_2,dt_3,fudge,tm,m1,m2,m3; ^~~~ ../../../src/mdlib/shellfc.c: In function 'init_shell_flexcon': ../../../src/mdlib/shellfc.c:197:32: warning: unused variable 'mt' [-Wunused-variable] int i,j,nmol,type,mb,mt,a_offset,cg,mol,ftype,nra; ^~ ../../../src/mdlib/shellfc.c:197:19: warning: unused variable 'nmol' [-Wunused-variable] int i,j,nmol,type,mb,mt,a_offset,cg,mol,ftype,nra; ^~~~ ../../../src/mdlib/shellfc.c: In function 'init_adir': ../../../src/mdlib/shellfc.c:694:12: warning: unused variable 'dx' [-Wunused-variable] rvec p,dx; ^~ ../../../src/mdlib/shellfc.c:694:10: warning: unused variable 'p' [-Wunused-variable] rvec p,dx; ^ ../../../src/mdlib/shellfc.c:691:13: warning: unused variable 'scale' [-Wunused-variable] real dt,scale; ^~~~~ ../../../src/mdlib/shellfc.c:690:16: warning: unused variable 'gt' [-Wunused-variable] int gf,ga,gt; ^~ ../../../src/mdlib/shellfc.c:690:13: warning: unused variable 'ga' [-Wunused-variable] int gf,ga,gt; ^~ ../../../src/mdlib/shellfc.c:690:10: warning: unused variable 'gf' [-Wunused-variable] int gf,ga,gt; ^~ ../../../src/mdlib/shellfc.c: In function 'relax_shell_flexcon': ../../../src/mdlib/shellfc.c:776:19: warning: unused variable 'g' [-Wunused-variable] int nflexcon,g,number_steps,d,Min=0,count=0; ^ ../../../src/mdlib/shellfc.c:772:10: warning: unused variable 'cbuf' [-Wunused-variable] char cbuf[56]; ^~~~ ../../../src/mdlib/shellfc.c:771:19: warning: unused variable 'xiS' [-Wunused-variable] real ftol,xiH,xiS,dum=0; ^~~ ../../../src/mdlib/shellfc.c:771:15: warning: unused variable 'xiH' [-Wunused-variable] real ftol,xiH,xiS,dum=0; ^~~ ../../../src/mdlib/shellfc.c:769:10: warning: unused variable 'dx' [-Wunused-variable] rvec dx; ^~ In file included from ../../../src/mdlib/shellfc.c:55: At top level: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/mdrun.h:50, from ../../../src/mdlib/shellfc.c:45: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../src/mdlib/shellfc.c:43: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/mdlib/shellfc.c:43: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sim_util.lo ../../../src/mdlib/sim_util.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/sim_util.c -fPIC -DPIC -o .libs/sim_util.o ../../../src/mdlib/sim_util.c: In function 'calc_virial': ../../../src/mdlib/sim_util.c:250:10: warning: unused variable 'virtest' [-Wunused-variable] tensor virtest; ^~~~~~~ ../../../src/mdlib/sim_util.c:249:9: warning: unused variable 'j' [-Wunused-variable] int i,j; ^ ../../../src/mdlib/sim_util.c: In function 'do_force': ../../../src/mdlib/sim_util.c:357:24: warning: unused variable 'cycles_pme' [-Wunused-variable] float cycles_ppdpme,cycles_pme,cycles_force; ^~~~~~~~~~ ../../../src/mdlib/sim_util.c:355:10: warning: unused variable 'e' [-Wunused-variable] real e,v,dvdl; ^ ../../../src/mdlib/sim_util.c:354:10: warning: unused variable 'boxs' [-Wunused-variable] matrix boxs; ^~~~ ../../../src/mdlib/sim_util.c:353:57: warning: unused variable 'bBS' [-Wunused-variable] bool bSepDVDL,bStateChanged,bNS,bFillGrid,bCalcCGCM,bBS,bDoForces; ^~~ ../../../src/mdlib/sim_util.c:348:15: warning: unused variable 'box_size' [-Wunused-variable] static rvec box_size; ^~~~~~~~ ../../../src/mdlib/sim_util.c: In function 'calc_enervirdiff': ../../../src/mdlib/sim_util.c:823:13: warning: variable 'r1' set but not used [-Wunused-but-set-variable] double r0,r1,r,rc3,rc9,ea,eb,ec,pa,pb,pc,pd; ^~ ../../../src/mdlib/sim_util.c: In function 'init_md': ../../../src/mdlib/sim_util.c:1222:13: warning: unused variable 'mod' [-Wunused-variable] real tmpt,mod; ^~~ ../../../src/mdlib/sim_util.c:1222:8: warning: unused variable 'tmpt' [-Wunused-variable] real tmpt,mod; ^~~~ ../../../src/mdlib/sim_util.c:1221:12: warning: unused variable 'n' [-Wunused-variable] int i,j,n; ^ ../../../src/mdlib/sim_util.c:1221:10: warning: unused variable 'j' [-Wunused-variable] int i,j,n; ^ At top level: ../../../src/mdlib/sim_util.c:348:15: warning: 'box_size' defined but not used [-Wunused-variable] static rvec box_size; ^~~~~~~~ In file included from ../../../src/mdlib/sim_util.c:78: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/pme.h:46, from ../../../src/mdlib/sim_util.c:68: ../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function] static t_complex cdiv(t_complex teller,t_complex noemer) ^~~~ ../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function] static t_complex csub(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function] static t_complex cadd(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function] static t_complex rcexp(real r) ^~~~~ ../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable] static t_complex cnul = { 0.0, 0.0 }; ^~~~ In file included from ../../../src/mdlib/sim_util.c:57: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/mdlib/sim_util.c:57: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_parallel_3dfft.lo ../../../src/mdlib/gmx_parallel_3dfft.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/gmx_parallel_3dfft.c -fPIC -DPIC -o .libs/gmx_parallel_3dfft.o make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ns.lo ../../../src/mdlib/ns.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/ns.c -fPIC -DPIC -o .libs/ns.o ../../../src/mdlib/ns.c: In function 'new_i_nblist': ../../../src/mdlib/ns.c:394:20: warning: unused variable 'nshift' [-Wunused-variable] int i,k,nri,nshift; ^~~~~~ ../../../src/mdlib/ns.c:394:14: warning: unused variable 'k' [-Wunused-variable] int i,k,nri,nshift; ^ ../../../src/mdlib/ns.c:394:12: warning: unused variable 'i' [-Wunused-variable] int i,k,nri,nshift; ^ ../../../src/mdlib/ns.c: In function 'put_in_list': ../../../src/mdlib/ns.c:546:25: warning: unused variable 'rlj' [-Wunused-variable] real qi,qiB,qq,rlj; ^~~ ../../../src/mdlib/ns.c:546:22: warning: unused variable 'qq' [-Wunused-variable] real qi,qiB,qq,rlj; ^~ ../../../src/mdlib/ns.c:541:23: warning: unused variable 'len' [-Wunused-variable] int i0,nicg,len; ^~~ ../../../src/mdlib/ns.c:539:39: warning: unused variable 'ind_ij' [-Wunused-variable] int i,j,jcg,igid,gid,nbl_ind,ind_ij; ^~~~~~ ../../../src/mdlib/ns.c: In function 'ns_inner_tric': ../../../src/mdlib/ns.c:1283:15: warning: unused variable 'nsbuf' [-Wunused-variable] t_ns_buf *nsbuf; ^~~~~ ../../../src/mdlib/ns.c: In function 'ns_inner_rect': ../../../src/mdlib/ns.c:1314:15: warning: unused variable 'nsbuf' [-Wunused-variable] t_ns_buf *nsbuf; ^~~~~ ../../../src/mdlib/ns.c: In function 'ns_simple_core': ../../../src/mdlib/ns.c:1365:38: warning: unused variable 'nri' [-Wunused-variable] int nsearch,icg,jcg,igid,i0,nri,nn; ^~~ ../../../src/mdlib/ns.c:1365:35: warning: unused variable 'i0' [-Wunused-variable] int nsearch,icg,jcg,igid,i0,nri,nn; ^~ ../../../src/mdlib/ns.c:1365:26: warning: unused variable 'jcg' [-Wunused-variable] int nsearch,icg,jcg,igid,i0,nri,nn; ^~~ ../../../src/mdlib/ns.c: In function 'nsgrid_core': ../../../src/mdlib/ns.c:1674:58: warning: unused variable 'dcz' [-Wunused-variable] real r2,rs2,rvdw2,rcoul2,rm2,rl2,XI,YI,ZI,dcx,dcy,dcz,tmp1,tmp2; ^~~ ../../../src/mdlib/ns.c:1674:54: warning: unused variable 'dcy' [-Wunused-variable] real r2,rs2,rvdw2,rcoul2,rm2,rl2,XI,YI,ZI,dcx,dcy,dcz,tmp1,tmp2; ^~~ ../../../src/mdlib/ns.c:1674:50: warning: unused variable 'dcx' [-Wunused-variable] real r2,rs2,rvdw2,rcoul2,rm2,rl2,XI,YI,ZI,dcx,dcy,dcz,tmp1,tmp2; ^~~ ../../../src/mdlib/ns.c:1673:13: warning: unused variable 'xi' [-Wunused-variable] rvec xi,*cgcm,grid_offset; ^~ ../../../src/mdlib/ns.c:1669:42: warning: unused variable 'nri' [-Wunused-variable] int cg0,cg1,icg=-1,cgsnr,i0,igid,nri,naaj,max_jcg; ^~~ ../../../src/mdlib/ns.c:1666:45: warning: variable 'grid_z' set but not used [-Wunused-but-set-variable] real gridx,gridy,gridz,grid_x,grid_y,grid_z; ^~~~~~ ../../../src/mdlib/ns.c: In function 'init_ns': ../../../src/mdlib/ns.c:2177:11: warning: unused variable 'ptr' [-Wunused-variable] char *ptr; ^~~ ../../../src/mdlib/ns.c: In function 'search_neighbours': ../../../src/mdlib/ns.c:2280:23: warning: unused variable 'cg_end' [-Wunused-variable] int cg_start,cg_end,start,end; ^~~~~~ ../../../src/mdlib/ns.c:2280:14: warning: unused variable 'cg_start' [-Wunused-variable] int cg_start,cg_end,start,end; ^~~~~~~~ ../../../src/mdlib/ns.c:2279:15: warning: unused variable 'i_egp_flags' [-Wunused-variable] bool *i_egp_flags; ^~~~~~~~~~~ ../../../src/mdlib/ns.c:2278:15: warning: unused variable 'ptr' [-Wunused-variable] char *ptr; ^~~ ../../../src/mdlib/ns.c:2274:16: warning: unused variable 'j' [-Wunused-variable] int i,j,m,ngid; ^ ../../../src/mdlib/ns.c:2274:14: warning: unused variable 'i' [-Wunused-variable] int i,j,m,ngid; ^ In file included from ../../../src/mdlib/ns.c:54: At top level: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../src/mdlib/ns.c:51: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../src/mdlib/ns.c:50: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o csettle.lo ../../../src/mdlib/csettle.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/csettle.c -fPIC -DPIC -o .libs/csettle.o ../../../src/mdlib/csettle.c: In function 'xshake': ../../../src/mdlib/csettle.c:183:39: warning: unused variable 'conv' [-Wunused-variable] int i,ll,ii,jj,l3,ix,iy,iz,jx,jy,jz,conv; ^~~~ ../../../src/mdlib/csettle.c: In function 'csettle': ../../../src/mdlib/csettle.c:298:10: warning: unused variable 'shakeret' [-Wunused-variable] int i, shakeret, ow1, hw2, hw3; ^~~~~~~~ In file included from ../../../src/mdlib/csettle.c:42: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/mdlib/csettle.c:42: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_fft.lo ../../../src/mdlib/gmx_fft.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/gmx_fft.c -fPIC -DPIC -o .libs/gmx_fft.o In file included from ../../../src/mdlib/gmx_fft.c:30: ../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function] static t_complex cdiv(t_complex teller,t_complex noemer) ^~~~ ../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function] static t_complex csub(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function] static t_complex cadd(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function] static t_complex rcexp(real r) ^~~~~ ../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable] static t_complex cnul = { 0.0, 0.0 }; ^~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_wallcycle.lo ../../../src/mdlib/gmx_wallcycle.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/gmx_wallcycle.c -fPIC -DPIC -o .libs/gmx_wallcycle.o ../../../src/mdlib/gmx_wallcycle.c: In function 'wallcycle_sum': ../../../src/mdlib/gmx_wallcycle.c:163:31: warning: unused variable 'buf_all' [-Wunused-variable] double buf[ewcNR],*cyc_all,*buf_all; ^~~~~~~ ../../../src/mdlib/gmx_wallcycle.c:163:22: warning: unused variable 'cyc_all' [-Wunused-variable] double buf[ewcNR],*cyc_all,*buf_all; ^~~~~~~ ../../../src/mdlib/gmx_wallcycle.c:163:10: warning: unused variable 'buf' [-Wunused-variable] double buf[ewcNR],*cyc_all,*buf_all; ^~~ At top level: ../../../src/mdlib/gmx_wallcycle.c:59:26: warning: 'wc_barrier' defined but not used [-Wunused-variable] static bool wc_barrier=FALSE; ^~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o update.lo ../../../src/mdlib/update.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/update.c -fPIC -DPIC -o .libs/update.o ../../../src/mdlib/update.c: In function 'update': ../../../src/mdlib/update.c:771:39: warning: unused variable 'g' [-Wunused-variable] int start,homenr,i,n,m,g; ^ ../../../src/mdlib/update.c:770:20: warning: variable 'dt_1' set but not used [-Wunused-but-set-variable] real dt_1; ^~~~ In file included from ../../../src/mdlib/update.c:62: At top level: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/update.h:48, from ../../../src/mdlib/update.c:53: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../src/mdlib/update.c:50: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/mdlib/update.c:50: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_fft_fftw3.lo ../../../src/mdlib/gmx_fft_fftw3.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/gmx_fft_fftw3.c -fPIC -DPIC -o .libs/gmx_fft_fftw3.o In file included from ../../../include/gmx_fft.h:41, from ../../../src/mdlib/gmx_fft_fftw3.c:27: ../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function] static t_complex cdiv(t_complex teller,t_complex noemer) ^~~~ ../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function] static t_complex csub(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function] static t_complex cadd(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function] static t_complex rcexp(real r) ^~~~~ ../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable] static t_complex cnul = { 0.0, 0.0 }; ^~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o minimize.lo ../../../src/mdlib/minimize.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/minimize.c -fPIC -DPIC -o .libs/minimize.o ../../../src/mdlib/minimize.c: In function 'get_f_norm_max': ../../../src/mdlib/minimize.c:153:14: warning: unused variable 'fmax2_0' [-Wunused-variable] real fmax2,fmax2_0,fam; ^~~~~~~ ../../../src/mdlib/minimize.c: In function 'evaluate_energy': ../../../src/mdlib/minimize.c:573:12: warning: unused variable 'state' [-Wunused-variable] t_state *state; ^~~~~ ../../../src/mdlib/minimize.c: In function 'do_cg': ../../../src/mdlib/minimize.c:813:10: warning: unused variable 'terminate' [-Wunused-variable] real terminate=0; ^~~~~~~~~ ../../../src/mdlib/minimize.c:798:26: warning: unused variable 'sum' [-Wunused-variable] double gpa,gpb,gpc,tmp,sum[2],minstep; ^~~ ../../../src/mdlib/minimize.c:797:28: warning: unused variable 'sfm' [-Wunused-variable] rvec *f_global,*p,*sf,*sfm; ^~~ ../../../src/mdlib/minimize.c: In function 'do_lbfgs': ../../../src/mdlib/minimize.c:1329:10: warning: unused variable 'terminate' [-Wunused-variable] real terminate; ^~~~~~~~~ ../../../src/mdlib/minimize.c:1320:20: warning: variable 'first' set but not used [-Wunused-but-set-variable] bool converged,first; ^~~~~ ../../../src/mdlib/minimize.c: In function 'do_steep': ../../../src/mdlib/minimize.c:1957:10: warning: unused variable 'terminate' [-Wunused-variable] real terminate=0; ^~~~~~~~~ ../../../src/mdlib/minimize.c:1946:16: warning: unused variable 'dvdlambda' [-Wunused-variable] real ustep,dvdlambda,fnormn; ^~~~~~~~~ ../../../src/mdlib/minimize.c:1945:19: warning: unused variable 'constepsize' [-Wunused-variable] real stepsize,constepsize; ^~~~~~~~~~~ ../../../src/mdlib/minimize.c: In function 'do_nm': ../../../src/mdlib/minimize.c:2163:22: warning: unused variable 'fmax' [-Wunused-variable] real fnorm,fmax; ^~~~ ../../../src/mdlib/minimize.c:2163:16: warning: unused variable 'fnorm' [-Wunused-variable] real fnorm,fmax; ^~~~~ ../../../src/mdlib/minimize.c:2151:16: warning: unused variable 'nfmax' [-Wunused-variable] int nfmax,count; ^~~~~ ../../../src/mdlib/minimize.c:2149:16: warning: unused variable 'bNS' [-Wunused-variable] bool bNS; ^~~ ../../../src/mdlib/minimize.c:2148:18: warning: variable 'lambda' set but not used [-Wunused-but-set-variable] real t,lambda,t0,lam0; ^~~~~~ ../../../src/mdlib/minimize.c: In function 'do_tpi': ../../../src/mdlib/minimize.c:2419:18: warning: unused variable 'end' [-Wunused-variable] int i,start,end; ^~~ ../../../src/mdlib/minimize.c:2419:12: warning: unused variable 'start' [-Wunused-variable] int i,start,end; ^~~~~ ../../../src/mdlib/minimize.c:2404:15: warning: unused variable 'TPI' [-Wunused-variable] const char *TPI="Test Particle Insertion"; ^~~ At top level: ../../../src/mdlib/minimize.c:515:13: warning: 'do_x_sub' defined but not used [-Wunused-function] static void do_x_sub(t_commrec *cr,int n,rvec *x1,rvec *x2,real a,rvec *f) ^~~~~~~~ ../../../src/mdlib/minimize.c:493:13: warning: 'do_x_step' defined but not used [-Wunused-function] static void do_x_step(t_commrec *cr,int n,rvec *x1,real a,rvec *f,rvec *x2) ^~~~~~~~~ In file included from ../../../include/pme.h:46, from ../../../src/mdlib/minimize.c:83: ../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function] static t_complex cdiv(t_complex teller,t_complex noemer) ^~~~ ../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function] static t_complex csub(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function] static t_complex cadd(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function] static t_complex rcexp(real r) ^~~~~ ../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable] static t_complex cnul = { 0.0, 0.0 }; ^~~~ In file included from ../../../include/statutil.h:51, from ../../../src/mdlib/minimize.c:63: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../include/pull.h:44, from ../../../include/update.h:49, from ../../../src/mdlib/minimize.c:59: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../include/pull.h:44, from ../../../include/update.h:49, from ../../../src/mdlib/minimize.c:59: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/mdlib/minimize.c:47: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o qm_gaussian.lo ../../../src/mdlib/qm_gaussian.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/qm_gaussian.c -fPIC -DPIC -o .libs/qm_gaussian.o ../../../src/mdlib/qm_gaussian.c: In function 'init_gaussian': ../../../src/mdlib/qm_gaussian.c:73:6: warning: unused variable 'rffile' [-Wunused-variable] *rffile=NULL,*out=NULL; ^~~~~~ In file included from ../../../src/mdlib/qm_gaussian.c:60: At top level: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/mdlib/qm_gaussian.c:49: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../src/mdlib/qm_gaussian.c:48: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/mdlib/qm_gaussian.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o qmmm.lo ../../../src/mdlib/qmmm.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/qmmm.c -fPIC -DPIC -o .libs/qmmm.o ../../../src/mdlib/qmmm.c: In function 'update_QMMMrec': ../../../src/mdlib/qmmm.c:725:6: warning: unused variable 'MMatoms' [-Wunused-variable] *MMatoms; ^~~~~~~ ../../../src/mdlib/qmmm.c:721:17: warning: variable 'QMMMlist_lr' set but not used [-Wunused-but-set-variable] QMMMlist_sr,QMMMlist_lr; ^~~~~~~~~~~ At top level: ../../../src/mdlib/qmmm.c:131:12: warning: 'int_comp' defined but not used [-Wunused-function] static int int_comp(const void *a,const void *b){ ^~~~~~~~ In file included from ../../../src/mdlib/qmmm.c:60: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/mdlib/qmmm.c:49: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../src/mdlib/qmmm.c:48: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/mdlib/qmmm.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o vsite.lo ../../../src/mdlib/vsite.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/vsite.c -fPIC -DPIC -o .libs/vsite.o ../../../src/mdlib/vsite.c: In function 'constr_vsiten': ../../../src/mdlib/vsite.c:437:8: warning: unused variable 'xs' [-Wunused-variable] rvec xs,x1,dx; ^~ ../../../src/mdlib/vsite.c: In function 'construct_vsites': ../../../src/mdlib/vsite.c:484:25: warning: unused variable 'rtmp' [-Wunused-variable] rvec reftmp,vtmp,rtmp; ^~~~ ../../../src/mdlib/vsite.c:484:20: warning: unused variable 'vtmp' [-Wunused-variable] rvec reftmp,vtmp,rtmp; ^~~~ ../../../src/mdlib/vsite.c:484:13: warning: unused variable 'reftmp' [-Wunused-variable] rvec reftmp,vtmp,rtmp; ^~~~~~ ../../../src/mdlib/vsite.c:478:19: warning: unused variable 'ii' [-Wunused-variable] int i,inc,ii,nra,nr,tp,ftype; ^~ ../../../src/mdlib/vsite.c: In function 'spread_vsite2': ../../../src/mdlib/vsite.c:655:11: warning: unused variable 'b' [-Wunused-variable] real b; ^ ../../../src/mdlib/vsite.c: In function 'spread_vsite3FD': ../../../src/mdlib/vsite.c:770:23: warning: unused variable 'd' [-Wunused-variable] int svi,sji,skj,d; ^ ../../../src/mdlib/vsite.c:767:14: warning: unused variable 'fz' [-Wunused-variable] real fx,fy,fz,c,invl,fproj,a1; ^~ ../../../src/mdlib/vsite.c:767:11: warning: unused variable 'fy' [-Wunused-variable] real fx,fy,fz,c,invl,fproj,a1; ^~ ../../../src/mdlib/vsite.c:767:8: warning: unused variable 'fx' [-Wunused-variable] real fx,fy,fz,c,invl,fproj,a1; ^~ ../../../src/mdlib/vsite.c: In function 'spread_vsite_f': ../../../src/mdlib/vsite.c:1255:19: warning: unused variable 'm' [-Wunused-variable] int i,inc,m,nra,nr,tp,ftype; ^ ../../../src/mdlib/vsite.c: In function 'count_intercg_vsite': ../../../src/mdlib/vsite.c:1409:11: warning: unused variable 'mt' [-Wunused-variable] int mb,mt,ftype,nral,i,cg,a; ^~ ../../../src/mdlib/vsite.c: In function 'get_vsite_pbc': ../../../src/mdlib/vsite.c:1448:38: warning: unused variable 'cg_c' [-Wunused-variable] int ftype,nral,i,j,vsi,vsite,cg_v,cg_c,a,nc3=0; ^~~~ ../../../src/mdlib/vsite.c: In function 'init_vsite': ../../../src/mdlib/vsite.c:1559:13: warning: unused variable 'cg' [-Wunused-variable] int *a2cg,cg; ^~ In file included from ../../../src/mdlib/vsite.c:46: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/mdlib/vsite.c:46: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o clincs.lo ../../../src/mdlib/clincs.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/clincs.c -fPIC -DPIC -o .libs/clincs.o ../../../src/mdlib/clincs.c: In function 'do_lincsp': ../../../src/mdlib/clincs.c:189:54: warning: unused variable 'lam' [-Wunused-variable] real tmp0,tmp1,tmp2,im1,im2,mvb,rlen,len,wfac,lam; ^~~ ../../../src/mdlib/clincs.c:189:49: warning: unused variable 'wfac' [-Wunused-variable] real tmp0,tmp1,tmp2,im1,im2,mvb,rlen,len,wfac,lam; ^~~~ ../../../src/mdlib/clincs.c:189:45: warning: unused variable 'len' [-Wunused-variable] real tmp0,tmp1,tmp2,im1,im2,mvb,rlen,len,wfac,lam; ^~~ ../../../src/mdlib/clincs.c:189:40: warning: unused variable 'rlen' [-Wunused-variable] real tmp0,tmp1,tmp2,im1,im2,mvb,rlen,len,wfac,lam; ^~~~ ../../../src/mdlib/clincs.c: In function 'set_lincs': ../../../src/mdlib/clincs.c:764:14: warning: variable 'bLocal' set but not used [-Wunused-but-set-variable] bool bLocal; ^~~~~~ ../../../src/mdlib/clincs.c: In function 'constrain_lincs': ../../../src/mdlib/clincs.c:1084:25: warning: unused variable 'error' [-Wunused-variable] int i,warn,p_imax,error; ^~~~~ At top level: ../../../src/mdlib/clincs.c:1034:13: warning: 'dump_conf' defined but not used [-Wunused-function] static void dump_conf(gmx_domdec_t *dd,struct gmx_lincsdata *li, ^~~~~~~~~ In file included from ../../../include/mdrun.h:50, from ../../../src/mdlib/clincs.c:50: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../src/mdlib/clincs.c:47: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/mdlib/clincs.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/mdlib/clincs.c:45: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o domdec.lo ../../../src/mdlib/domdec.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/domdec.c -fPIC -DPIC -o .libs/domdec.o ../../../src/mdlib/domdec.c: In function 'dd_move_cellx': ../../../src/mdlib/domdec.c:785:41: warning: unused variable 'k' [-Wunused-variable] int d,d1,dim,dim1,pos,buf_size,i,j,k,p,npulse; ^ ../../../src/mdlib/domdec.c:785:19: warning: unused variable 'dim1' [-Wunused-variable] int d,d1,dim,dim1,pos,buf_size,i,j,k,p,npulse; ^~~~ ../../../src/mdlib/domdec.c: In function 'dd_collect_vec': ../../../src/mdlib/domdec.c:1212:11: warning: unused variable 'buf' [-Wunused-variable] rvec *buf=NULL; ^~~ ../../../src/mdlib/domdec.c:1211:18: warning: unused variable 'nalloc' [-Wunused-variable] int n,i,c,a,nalloc=0; ^~~~~~ ../../../src/mdlib/domdec.c:1211:16: warning: unused variable 'a' [-Wunused-variable] int n,i,c,a,nalloc=0; ^ ../../../src/mdlib/domdec.c:1211:14: warning: unused variable 'c' [-Wunused-variable] int n,i,c,a,nalloc=0; ^ ../../../src/mdlib/domdec.c:1211:12: warning: unused variable 'i' [-Wunused-variable] int n,i,c,a,nalloc=0; ^ ../../../src/mdlib/domdec.c:1211:10: warning: unused variable 'n' [-Wunused-variable] int n,i,c,a,nalloc=0; ^ ../../../src/mdlib/domdec.c:1210:26: warning: unused variable 'ma' [-Wunused-variable] gmx_domdec_master_t *ma; ^~ ../../../src/mdlib/domdec.c: In function 'dd_distribute_vec_scatterv': ../../../src/mdlib/domdec.c:1427:18: warning: unused variable 'nalloc' [-Wunused-variable] int n,i,c,a,nalloc=0; ^~~~~~ ../../../src/mdlib/domdec.c: In function 'gmx_ddcoord2pmeindex': ../../../src/mdlib/domdec.c:1805:28: warning: unused variable 'nc' [-Wunused-variable] ivec coords,coords_pme,nc; ^~ ../../../src/mdlib/domdec.c:1805:17: warning: unused variable 'coords_pme' [-Wunused-variable] ivec coords,coords_pme,nc; ^~~~~~~~~~ ../../../src/mdlib/domdec.c: In function 'dd_simnode2pmenode': ../../../src/mdlib/domdec.c:1874:16: warning: unused variable 'coord_pme' [-Wunused-variable] ivec coord,coord_pme; ^~~~~~~~~ ../../../src/mdlib/domdec.c:1874:10: warning: unused variable 'coord' [-Wunused-variable] ivec coord,coord_pme; ^~~~~ ../../../src/mdlib/domdec.c: In function 'receive_vir_ener': ../../../src/mdlib/domdec.c:2005:30: warning: unused variable 'rank' [-Wunused-variable] int pmenode,coords[DIM],rank; ^~~~ ../../../src/mdlib/domdec.c:2005:18: warning: unused variable 'coords' [-Wunused-variable] int pmenode,coords[DIM],rank; ^~~~~~ ../../../src/mdlib/domdec.c: In function 'make_dd_indices': ../../../src/mdlib/domdec.c:2107:11: warning: variable 'bLocalCG' set but not used [-Wunused-but-set-variable] char *bLocalCG; ^~~~~~~~ ../../../src/mdlib/domdec.c: In function 'check_bLocalCG': ../../../src/mdlib/domdec.c:2162:9: warning: unused variable 'ncg' [-Wunused-variable] int ncg,i,ngl,nerr; ^~~ ../../../src/mdlib/domdec.c: In function 'dd_redistribute_cg': ../../../src/mdlib/domdec.c:3706:49: warning: unused variable 'cell_d' [-Wunused-variable] int c,i,cg,k,k0,k1,d,dim,dim2,dir,d2,d3,d4,cell_d; ^~~~~~ ../../../src/mdlib/domdec.c:3706:46: warning: unused variable 'd4' [-Wunused-variable] int c,i,cg,k,k0,k1,d,dim,dim2,dir,d2,d3,d4,cell_d; ^~ ../../../src/mdlib/domdec.c: In function 'get_load_distribution': ../../../src/mdlib/domdec.c:4326:16: warning: unused variable 'cid' [-Wunused-variable] int d,dim,cid,i,pos; ^~~ ../../../src/mdlib/domdec.c: In function 'setup_dd_grid': ../../../src/mdlib/domdec.c:4781:10: warning: unused variable 'bZYX' [-Wunused-variable] bool bZYX; ^~~~ ../../../src/mdlib/domdec.c: In function 'make_pp_communicator': ../../../src/mdlib/domdec.c:4944:10: warning: unused variable 'periods' [-Wunused-variable] ivec periods; ^~~~~~~ ../../../src/mdlib/domdec.c:4943:18: warning: unused variable 'buf' [-Wunused-variable] int i,rank,*buf; ^~~ ../../../src/mdlib/domdec.c:4943:12: warning: unused variable 'rank' [-Wunused-variable] int i,rank,*buf; ^~~~ ../../../src/mdlib/domdec.c:4943:10: warning: unused variable 'i' [-Wunused-variable] int i,rank,*buf; ^ ../../../src/mdlib/domdec.c:4942:24: warning: variable 'comm' set but not used [-Wunused-but-set-variable] gmx_domdec_comm_t *comm; ^~~~ ../../../src/mdlib/domdec.c: In function 'receive_ddindex2simnodeid': ../../../src/mdlib/domdec.c:5069:11: warning: unused variable 'buf' [-Wunused-variable] int *buf; ^~~ ../../../src/mdlib/domdec.c:5068:24: warning: variable 'comm' set but not used [-Wunused-but-set-variable] gmx_domdec_comm_t *comm; ^~~~ ../../../src/mdlib/domdec.c: In function 'split_communicator': ../../../src/mdlib/domdec.c:5131:10: warning: unused variable 'periods' [-Wunused-variable] ivec periods; ^~~~~~~ ../../../src/mdlib/domdec.c:5129:12: warning: unused variable 'rank' [-Wunused-variable] int i,rank; ^~~~ ../../../src/mdlib/domdec.c: In function 'check_dlb_support': ../../../src/mdlib/domdec.c:5598:9: warning: label 'edlbYES' defined but not used [-Wunused-label] edlbYES: ^~~~~~~ ../../../src/mdlib/domdec.c:5594:9: warning: label 'edlbAUTO' defined but not used [-Wunused-label] edlbAUTO: ^~~~~~~~ ../../../src/mdlib/domdec.c:5592:9: warning: label 'edlbNO' defined but not used [-Wunused-label] edlbNO: ^~~~~~ ../../../src/mdlib/domdec.c:5553:19: warning: unused variable 'dd' [-Wunused-variable] gmx_domdec_t *dd; ^~ ../../../src/mdlib/domdec.c: In function 'init_domain_decomposition': ../../../src/mdlib/domdec.c:5652:14: warning: unused variable 'j' [-Wunused-variable] int d,i,j; ^ ../../../src/mdlib/domdec.c:5652:12: warning: unused variable 'i' [-Wunused-variable] int d,i,j; ^ ../../../src/mdlib/domdec.c:5652:10: warning: unused variable 'd' [-Wunused-variable] int d,i,j; ^ ../../../src/mdlib/domdec.c: In function 'turn_on_dlb': ../../../src/mdlib/domdec.c:6010:10: warning: unused variable 'buf' [-Wunused-variable] char buf[STRLEN]; ^~~ ../../../src/mdlib/domdec.c: In function 'dd_init_bondeds': ../../../src/mdlib/domdec.c:6086:10: warning: unused variable 'd' [-Wunused-variable] int d; ^ ../../../src/mdlib/domdec.c:6085:10: warning: unused variable 'bBondComm' [-Wunused-variable] bool bBondComm; ^~~~~~~~~ ../../../src/mdlib/domdec.c: In function 'setup_dd_communication': ../../../src/mdlib/domdec.c:6486:64: warning: unused variable 'inv_ncg' [-Wunused-variable] real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh; ^~~~~~~ ../../../src/mdlib/domdec.c:6486:58: warning: unused variable 'r2inc' [-Wunused-variable] real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh; ^~~~~ ../../../src/mdlib/domdec.c:6486:47: warning: unused variable 'r_1' [-Wunused-variable] real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh; ^~~ ../../../src/mdlib/domdec.c:6486:43: warning: unused variable 'r_0' [-Wunused-variable] real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh; ^~~ ../../../src/mdlib/domdec.c:6486:23: warning: unused variable 'r_scomm2' [-Wunused-variable] real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh; ^~~~~~~~ ../../../src/mdlib/domdec.c:6486:10: warning: unused variable 'r_mb' [-Wunused-variable] real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh; ^~~~ ../../../src/mdlib/domdec.c: In function 'dd_partition_system': ../../../src/mdlib/domdec.c:7481:12: warning: unused variable 'j' [-Wunused-variable] int i,j,n,cg0=0,ncg_home_old=-1; ^ At top level: ../../../src/mdlib/domdec.c:1781:13: warning: 'dd_pmenodes' defined but not used [-Wunused-function] static int *dd_pmenodes(t_commrec *cr) ^~~~~~~~~~~ In file included from ../../../include/mdrun.h:50, from ../../../src/mdlib/domdec.c:44: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../include/pme.h:46, from ../../../src/mdlib/domdec.c:41: ../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function] static t_complex cdiv(t_complex teller,t_complex noemer) ^~~~ ../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function] static t_complex csub(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function] static t_complex cadd(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function] static t_complex rcexp(real r) ^~~~~ ../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable] static t_complex cnul = { 0.0, 0.0 }; ^~~~ In file included from ../../../src/mdlib/domdec.c:31: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/mdlib/domdec.c:31: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -version-info 5:0:0 -lgslcblas -o libmd.la -rpath /usr/lib64 calcmu.lo calcvir.lo constr.lo coupling.lo domdec.lo domdec_con.lo domdec_network.lo domdec_setup.lo domdec_top.lo ebin.lo edsam.lo ewald.lo fftgrid.lo force.lo ghat.lo init.lo mdatom.lo mdebin.lo minimize.lo mvxvf.lo ns.lo nsgrid.lo perf_est.lo pme.lo pme_pp.lo pppm.lo partdec.lo pull.lo pullutil.lo rf_util.lo shakef.lo sim_util.lo shellfc.lo stat.lo tables.lo tgroup.lo update.lo vcm.lo vsite.lo wall.lo wnblist.lo csettle.lo clincs.lo qmmm.lo gmx_fft.lo gmx_parallel_3dfft.lo gmx_wallcycle.lo qm_gaussian.lo gmx_fft_fftw3.lo ../gmxlib/libgmx.la -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath x86_64-alt-linux-gcc -shared .libs/calcmu.o .libs/calcvir.o .libs/constr.o .libs/coupling.o .libs/domdec.o .libs/domdec_con.o .libs/domdec_network.o .libs/domdec_setup.o .libs/domdec_top.o .libs/ebin.o .libs/edsam.o .libs/ewald.o .libs/fftgrid.o .libs/force.o .libs/ghat.o .libs/init.o .libs/mdatom.o .libs/mdebin.o .libs/minimize.o .libs/mvxvf.o .libs/ns.o .libs/nsgrid.o .libs/perf_est.o .libs/pme.o .libs/pme_pp.o .libs/pppm.o .libs/partdec.o .libs/pull.o .libs/pullutil.o .libs/rf_util.o .libs/shakef.o .libs/sim_util.o .libs/shellfc.o .libs/stat.o .libs/tables.o .libs/tgroup.o .libs/update.o .libs/vcm.o .libs/vsite.o .libs/wall.o .libs/wnblist.o .libs/csettle.o .libs/clincs.o .libs/qmmm.o .libs/gmx_fft.o .libs/gmx_parallel_3dfft.o .libs/gmx_wallcycle.o .libs/qm_gaussian.o .libs/gmx_fft_fftw3.o -lgslcblas ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wl,-soname -Wl,libmd.so.5 -o .libs/libmd.so.5.0.0 (cd .libs && rm -f libmd.so.5 && ln -s libmd.so.5.0.0 libmd.so.5) (cd .libs && rm -f libmd.so && ln -s libmd.so.5.0.0 libmd.so) creating libmd.la (cd .libs && rm -f libmd.la && ln -s ../libmd.la libmd.la) make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' Making all in kernel make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o compute_io.lo ../../../src/kernel/compute_io.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/compute_io.c -fPIC -DPIC -o .libs/compute_io.o ../../../src/kernel/compute_io.c: In function 'compute_io': ../../../src/kernel/compute_io.c:49:53: warning: unused variable 'nfep' [-Wunused-variable] int nstx=0,nstv=0,nstf=0,nste=0,nstlog=0,nstxtc=0,nfep=0; ^~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gpp_bond_atomtype.lo ../../../src/kernel/gpp_bond_atomtype.c mkdir .libs mkdir: cannot create directory '.libs': File exists x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/gpp_bond_atomtype.c -fPIC -DPIC -o .libs/gpp_bond_atomtype.o make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o h_db.lo ../../../src/kernel/h_db.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/h_db.c -fPIC -DPIC -o .libs/h_db.o ../../../src/kernel/h_db.c: In function 'dump_h_db': ../../../src/kernel/h_db.c:113:10: warning: unused variable 'j' [-Wunused-variable] int i,j,k; ^ In file included from ../../../src/kernel/hackblock.h:42, from ../../../src/kernel/h_db.h:41, from ../../../src/kernel/h_db.c:47: At top level: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/hackblock.h:41, from ../../../src/kernel/h_db.h:41, from ../../../src/kernel/h_db.c:47: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o add_par.lo ../../../src/kernel/add_par.c mkdir .libs mkdir: cannot create directory '.libs': File exists x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/add_par.c -fPIC -DPIC -o .libs/add_par.o In file included from ../../../src/kernel/hackblock.h:41, from ../../../src/kernel/add_par.c:46: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/kernel/add_par.c:44: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pgutil.lo ../../../src/kernel/pgutil.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/pgutil.c -fPIC -DPIC -o .libs/pgutil.o make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o convparm.lo ../../../src/kernel/convparm.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/convparm.c -fPIC -DPIC -o .libs/convparm.o ../../../src/kernel/convparm.c: In function 'new_interaction_list': ../../../src/kernel/convparm.c:404:7: warning: unused variable 'i' [-Wunused-variable] int i; ^ ../../../src/kernel/convparm.c: In function 'convert_params': ../../../src/kernel/convparm.c:414:12: warning: unused variable 'j' [-Wunused-variable] int i,j,maxtypes,mt; ^ At top level: ../../../src/kernel/convparm.c:402:13: warning: 'new_interaction_list' defined but not used [-Wunused-function] static void new_interaction_list(t_ilist *ilist) ^~~~~~~~~~~~~~~~~~~~ In file included from ../../../src/kernel/topio.h:41, from ../../../src/kernel/convparm.c:48: ../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable] static const char *couple_lam[ecouplamNR+1] = { ^~~~~~~~~~ ../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable] static const char *constraints[eshNR+1] = { ^~~~~~~~~~~ In file included from ../../../src/kernel/readir.h:43, from ../../../src/kernel/topio.h:41, from ../../../src/kernel/convparm.c:48: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/readir.h:42, from ../../../src/kernel/topio.h:41, from ../../../src/kernel/convparm.c:48: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/kernel/convparm.c:44: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/convparm.c:44: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gpp_atomtype.lo ../../../src/kernel/gpp_atomtype.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/gpp_atomtype.c -fPIC -DPIC -o .libs/gpp_atomtype.o In file included from ../../../src/kernel/topdirs.h:40, from ../../../src/kernel/gpp_atomtype.c:45: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o hackblock.lo ../../../src/kernel/hackblock.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/hackblock.c -fPIC -DPIC -o .libs/hackblock.o In file included from ../../../src/kernel/hackblock.c:44: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/hackblock.c:44: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/hackblock.h:42, from ../../../src/kernel/hackblock.c:42: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/hackblock.h:41, from ../../../src/kernel/hackblock.c:42: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o hizzie.lo ../../../src/kernel/hizzie.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/hizzie.c -fPIC -DPIC -o .libs/hizzie.o ../../../src/kernel/hizzie.c: In function 'set_histp': ../../../src/kernel/hizzie.c:195:8: warning: unused variable 'd' [-Wunused-variable] real d; ^ ../../../src/kernel/hizzie.c:192:27: warning: unused variable 'his0' [-Wunused-variable] int i,j,nd,na,aj,hisnr,his0,type=-1; ^~~~ ../../../src/kernel/hizzie.c:192:18: warning: unused variable 'aj' [-Wunused-variable] int i,j,nd,na,aj,hisnr,his0,type=-1; ^~ ../../../src/kernel/hizzie.c:188:15: warning: unused variable 'bHaveH' [-Wunused-variable] bool *hbond,bHaveH=FALSE; ^~~~~~ In file included from ../../../src/kernel/toputil.h:40, from ../../../src/kernel/hizzie.c:48: At top level: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/hizzie.c:46: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/hizzie.c:46: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/hizzie.c:44: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmxcpp.lo ../../../src/kernel/gmxcpp.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/gmxcpp.c -fPIC -DPIC -o .libs/gmxcpp.o ../../../src/kernel/gmxcpp.c: In function 'cpp_close_file': ../../../src/kernel/gmxcpp.c:453:7: warning: unused variable 'i' [-Wunused-variable] int i; ^ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o genhydro.lo ../../../src/kernel/genhydro.c mkdir .libs mkdir: cannot create directory '.libs': File exists x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/genhydro.c -fPIC -DPIC -o .libs/genhydro.o In file included from ../../../src/kernel/hackblock.h:42, from ../../../src/kernel/genhydro.h:41, from ../../../src/kernel/genhydro.c:56: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/genhydro.h:40, from ../../../src/kernel/genhydro.c:56: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/kernel/genhydro.c:51: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/kernel/genhydro.c:50: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/genhydro.c:50: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/genhydro.c:46: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sorting.lo ../../../src/kernel/sorting.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/sorting.c -fPIC -DPIC -o .libs/sorting.o make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o grompp.o ../../../src/kernel/grompp.c ../../../src/kernel/grompp.c: In function 'new_status': ../../../src/kernel/grompp.c:300:3: warning: statement with no effect [-Wunused-value] mbs; ^~~ ../../../src/kernel/grompp.c: In function 'read_posres': ../../../src/kernel/grompp.c:478:10: warning: unused variable 'bFirst' [-Wunused-variable] bool bFirst = TRUE; ^~~~~~ ../../../src/kernel/grompp.c: In function 'gen_posres': ../../../src/kernel/grompp.c:604:9: warning: unused variable 'j' [-Wunused-variable] int i,j; ^ ../../../src/kernel/grompp.c:604:7: warning: unused variable 'i' [-Wunused-variable] int i,j; ^ ../../../src/kernel/grompp.c: In function 'main': ../../../src/kernel/grompp.c:769:16: warning: unused variable 'natoms' [-Wunused-variable] int natoms,nvsite,comb,mt; ^~~~~~ In file included from ../../../src/kernel/hackblock.h:41, from ../../../src/kernel/pdb2top.h:43, from ../../../src/kernel/add_par.h:41, from ../../../src/kernel/grompp.c:74: At top level: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/kernel/grompp.c:60: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/grompp.c:60: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/grompp.c:54: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/kernel/grompp.c:50: ../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable] static const char *couple_lam[ecouplamNR+1] = { ^~~~~~~~~~ ../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable] static const char *constraints[eshNR+1] = { ^~~~~~~~~~~ In file included from ../../../src/kernel/readir.h:43, from ../../../src/kernel/grompp.c:50: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/readir.h:42, from ../../../src/kernel/grompp.c:50: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ ../../../src/kernel/grompp.c: In function 'main': ../../../src/kernel/grompp.c:380:19: warning: '%s' directive writing up to 4095 bytes into a region of size between 4045 and 4055 [-Wformat-overflow=] sprintf(buf,"%d non-matching atom name%s\n" ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../src/kernel/grompp.c:856:14: new_status(fn,opt2fn_null("-pp",NFILE,fnm),opt2fn("-c",NFILE,fnm), ~~ ../../../src/kernel/grompp.c:381:25: note: format string is defined here "atom names from %s will be used\n" ^~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../src/kernel/grompp.c:46: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 89 or more bytes (assuming 4194) into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pdb2top.lo ../../../src/kernel/pdb2top.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/pdb2top.c -fPIC -DPIC -o .libs/pdb2top.o ../../../src/kernel/pdb2top.c: In function 'missing_atoms': ../../../src/kernel/pdb2top.c:75:16: warning: unused variable 'bRet' [-Wunused-variable] bool bFound, bRet; ^~~~ In file included from ../../../src/kernel/topio.h:41, from ../../../src/kernel/pdb2top.c:57: At top level: ../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable] static const char *couple_lam[ecouplamNR+1] = { ^~~~~~~~~~ ../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable] static const char *constraints[eshNR+1] = { ^~~~~~~~~~~ In file included from ../../../src/kernel/readir.h:42, from ../../../src/kernel/topio.h:41, from ../../../src/kernel/pdb2top.c:57: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/kernel/hackblock.h:41, from ../../../src/kernel/pdb2top.h:43, from ../../../src/kernel/pdb2top.c:50: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/kernel/pdb2top.h:41, from ../../../src/kernel/pdb2top.c:50: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/pdb2top.c:44: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/kernel/pdb2top.c:43: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/pdb2top.c:43: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o topdirs.lo ../../../src/kernel/topdirs.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/topdirs.c -fPIC -DPIC -o .libs/topdirs.o make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gen_ad.lo ../../../src/kernel/gen_ad.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/gen_ad.c -fPIC -DPIC -o .libs/gen_ad.o ../../../src/kernel/gen_ad.c: In function 'get_impropers': ../../../src/kernel/gen_ad.c:437:25: warning: unused variable 'r' [-Wunused-variable] int nidih,i,j,k,r,start,ninc,nalloc; ^ ../../../src/kernel/gen_ad.c:436:15: warning: unused variable 'hbidih' [-Wunused-variable] t_rbonded *hbidih; ^~~~~~ ../../../src/kernel/gen_ad.c:434:14: warning: unused variable 'a0' [-Wunused-variable] char *a0; ^~ ../../../src/kernel/gen_ad.c: In function 'clean_excls': ../../../src/kernel/gen_ad.c:576:26: warning: unused variable 'n' [-Wunused-variable] int i,j,j1,k,k1,l,l1,m,n,e; ^ ../../../src/kernel/gen_ad.c:576:24: warning: unused variable 'm' [-Wunused-variable] int i,j,j1,k,k1,l,l1,m,n,e; ^ ../../../src/kernel/gen_ad.c: In function 'generate_excls': ../../../src/kernel/gen_ad.c:618:28: warning: unused variable 'e' [-Wunused-variable] int i,j,j1,k,k1,l,l1,m,n,e,N; ^ ../../../src/kernel/gen_ad.c:618:24: warning: unused variable 'm' [-Wunused-variable] int i,j,j1,k,k1,l,l1,m,n,e,N; ^ ../../../src/kernel/gen_ad.c:618:21: warning: unused variable 'l1' [-Wunused-variable] int i,j,j1,k,k1,l,l1,m,n,e,N; ^~ ../../../src/kernel/gen_ad.c:618:19: warning: unused variable 'l' [-Wunused-variable] int i,j,j1,k,k1,l,l1,m,n,e,N; ^ ../../../src/kernel/gen_ad.c:618:16: warning: unused variable 'k1' [-Wunused-variable] int i,j,j1,k,k1,l,l1,m,n,e,N; ^~ ../../../src/kernel/gen_ad.c:618:14: warning: unused variable 'k' [-Wunused-variable] int i,j,j1,k,k1,l,l1,m,n,e,N; ^ ../../../src/kernel/gen_ad.c:618:11: warning: unused variable 'j1' [-Wunused-variable] int i,j,j1,k,k1,l,l1,m,n,e,N; ^~ At top level: ../../../src/kernel/gen_ad.c:327:13: warning: 'dump_param' defined but not used [-Wunused-function] static void dump_param(FILE *fp,char *title,int n,t_param ps[]) ^~~~~~~~~~ ../../../src/kernel/gen_ad.c:289:13: warning: 'ideq' defined but not used [-Wunused-function] static bool ideq(t_param *p1, t_param *p2) ^~~~ ../../../src/kernel/gen_ad.c:114:13: warning: 'aeq' defined but not used [-Wunused-function] static bool aeq(t_param *p1, t_param *p2) ^~~ In file included from ../../../src/kernel/hackblock.h:41, from ../../../src/kernel/resall.h:41, from ../../../src/kernel/gen_ad.c:57: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/kernel/topio.h:41, from ../../../src/kernel/gen_ad.c:51: ../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable] static const char *couple_lam[ecouplamNR+1] = { ^~~~~~~~~~ ../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable] static const char *constraints[eshNR+1] = { ^~~~~~~~~~~ In file included from ../../../src/kernel/readir.h:42, from ../../../src/kernel/topio.h:41, from ../../../src/kernel/gen_ad.c:51: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/kernel/toputil.h:40, from ../../../src/kernel/gen_ad.c:50: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/gen_ad.c:48: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/gen_ad.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o readpull.lo ../../../src/kernel/readpull.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/readpull.c -fPIC -DPIC -o .libs/readpull.o ../../../src/kernel/readpull.c: In function 'read_pullparams': ../../../src/kernel/readpull.c:102:22: warning: unused variable 'nchar' [-Wunused-variable] int ninp,nerror,i,nchar,ndim,nscan,m; ^~~~~ In file included from ../../../src/kernel/readpull.c:54: At top level: ../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable] static const char *couple_lam[ecouplamNR+1] = { ^~~~~~~~~~ ../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable] static const char *constraints[eshNR+1] = { ^~~~~~~~~~~ In file included from ../../../src/kernel/readir.h:43, from ../../../src/kernel/readpull.c:54: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/readpull.c:46: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/readpull.c:46: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/kernel/readpull.c:45: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o resall.lo ../../../src/kernel/resall.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/resall.c -fPIC -DPIC -o .libs/resall.o In file included from ../../../src/kernel/hackblock.h:42, from ../../../src/kernel/resall.h:41, from ../../../src/kernel/resall.c:49: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/hackblock.h:41, from ../../../src/kernel/resall.h:41, from ../../../src/kernel/resall.c:49: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o tomorse.lo ../../../src/kernel/tomorse.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/tomorse.c -fPIC -DPIC -o .libs/tomorse.o In file included from ../../../src/kernel/tomorse.c:46: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o topexcl.lo ../../../src/kernel/topexcl.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/topexcl.c -fPIC -DPIC -o .libs/topexcl.o In file included from ../../../include/gpp_nextnb.h:40, from ../../../src/kernel/topexcl.c:45: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o specbond.lo ../../../src/kernel/specbond.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/specbond.c -fPIC -DPIC -o .libs/specbond.o In file included from ../../../src/kernel/specbond.c:49: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/specbond.c:49: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/pdb2top.h:41, from ../../../src/kernel/specbond.h:40, from ../../../src/kernel/specbond.c:47: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/specbond.c:43: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ ../../../src/kernel/specbond.c: In function 'mk_specbonds': ../../../src/kernel/specbond.c:236:19: warning: '%d' directive writing between 1 and 11 bytes into a region of size 10 [-Wformat-overflow=] sprintf(buf,"%s%d",*pdba->resname[pdba->atom[sgp[i]].resnr], ^~ ../../../src/kernel/specbond.c:236:16: note: directive argument in the range [-2147483647, 2147483647] sprintf(buf,"%s%d",*pdba->resname[pdba->atom[sgp[i]].resnr], ^~~~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../include/typedefs.h:52, from ../../../src/kernel/specbond.c:42: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 12) into a destination of size 10 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../src/kernel/specbond.c:245:19: warning: '%d' directive writing between 1 and 11 bytes into a region of size 10 [-Wformat-overflow=] sprintf(buf,"%s%d",*pdba->atomname[sgp[i]], sgp[i]+1); ^~ ../../../src/kernel/specbond.c:245:16: note: directive argument in the range [-2147483647, 2147483647] sprintf(buf,"%s%d",*pdba->atomname[sgp[i]], sgp[i]+1); ^~~~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../include/typedefs.h:52, from ../../../src/kernel/specbond.c:42: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 12) into a destination of size 10 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../src/kernel/specbond.c:252:19: warning: '%d' directive writing between 1 and 11 bytes into a region of size 10 [-Wformat-overflow=] sprintf(buf,"%s%d",*pdba->resname[pdba->atom[sgp[i]].resnr], ^~ ../../../src/kernel/specbond.c:252:16: note: directive argument in the range [-2147483647, 2147483647] sprintf(buf,"%s%d",*pdba->resname[pdba->atom[sgp[i]].resnr], ^~~~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../include/typedefs.h:52, from ../../../src/kernel/specbond.c:42: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 12) into a destination of size 10 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../src/kernel/specbond.c:255:19: warning: '%d' directive writing between 1 and 11 bytes into a region of size 10 [-Wformat-overflow=] sprintf(buf,"%s%d", *pdba->atomname[sgp[i]], sgp[i]+1); ^~ ../../../src/kernel/specbond.c:255:16: note: directive argument in the range [-2147483647, 2147483647] sprintf(buf,"%s%d", *pdba->atomname[sgp[i]], sgp[i]+1); ^~~~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../include/typedefs.h:52, from ../../../src/kernel/specbond.c:42: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 12) into a destination of size 10 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ter_db.lo ../../../src/kernel/ter_db.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/ter_db.c -fPIC -DPIC -o .libs/ter_db.o ../../../src/kernel/ter_db.c: In function 'print_ter_db': ../../../src/kernel/ter_db.c:105:20: warning: unused variable 'nname' [-Wunused-variable] char buf[STRLEN],nname[STRLEN]; ^~~~~ ../../../src/kernel/ter_db.c: In function 'filter_ter': ../../../src/kernel/ter_db.c:301:12: warning: unused variable 's2' [-Wunused-variable] char *s,*s2,*c; ^~ ../../../src/kernel/ter_db.c:299:13: warning: unused variable 'len' [-Wunused-variable] int i,j,n,len,none_idx; ^~~ In file included from ../../../src/kernel/hackblock.h:42, from ../../../src/kernel/resall.h:41, from ../../../src/kernel/ter_db.c:45: At top level: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/hackblock.h:41, from ../../../src/kernel/resall.h:41, from ../../../src/kernel/ter_db.c:45: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o glaasje.o ../../../src/kernel/glaasje.c ../../../src/kernel/glaasje.c: In function 'do_glas': ../../../src/kernel/glaasje.c:55:40: warning: unused variable 'r3' [-Wunused-variable] real wd,wdd,zi,fz,dd,d10,d4,d9,d3,r9,r3,sign,cc6,cc12; ^~ ../../../src/kernel/glaasje.c:55:37: warning: unused variable 'r9' [-Wunused-variable] real wd,wdd,zi,fz,dd,d10,d4,d9,d3,r9,r3,sign,cc6,cc12; ^~ In file included from ../../../src/kernel/glaasje.c:44: At top level: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o mdrun.o ../../../src/kernel/mdrun.c ../../../src/kernel/mdrun.c: In function 'main': ../../../src/kernel/mdrun.c:387:20: warning: unused variable 'fptest' [-Wunused-variable] FILE *fplog,*fptest; ^~~~~~ ../../../src/kernel/mdrun.c:386:12: warning: unused variable 'HaveCheckpoint' [-Wunused-variable] bool HaveCheckpoint; ^~~~~~~~~~~~~~ ../../../src/kernel/mdrun.c:285:15: warning: unused variable 'bPPPME' [-Wunused-variable] static bool bPPPME = FALSE; ^~~~~~ ../../../src/kernel/mdrun.c:284:15: warning: unused variable 'bCart' [-Wunused-variable] static bool bCart = FALSE; ^~~~~ At top level: ../../../src/kernel/mdrun.c:284:15: warning: 'bCart' defined but not used [-Wunused-variable] ../../../src/kernel/mdrun.c:285:15: warning: 'bPPPME' defined but not used [-Wunused-variable] static bool bPPPME = FALSE; ^~~~~~ In file included from ../../../include/pull.h:44, from ../../../include/mdrun.h:56, from ../../../src/kernel/mdrun.c:49: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../include/pull.h:44, from ../../../include/mdrun.h:56, from ../../../src/kernel/mdrun.c:49: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/mdrun.h:50, from ../../../src/kernel/mdrun.c:49: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/kernel/mdrun.c:44: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/kernel/mdrun.c:42: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o topshake.lo ../../../src/kernel/topshake.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/topshake.c -fPIC -DPIC -o .libs/topshake.o ../../../src/kernel/topshake.c: In function 'make_shake': ../../../src/kernel/topshake.c:98:19: warning: unused variable 'b' [-Wunused-variable] int nb,b,i,j,ftype,ftype_a; ^ ../../../src/kernel/topshake.c:98:16: warning: unused variable 'nb' [-Wunused-variable] int nb,b,i,j,ftype,ftype_a; ^~ In file included from ../../../src/kernel/topshake.c:46: At top level: ../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable] static const char *couple_lam[ecouplamNR+1] = { ^~~~~~~~~~ ../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable] static const char *constraints[eshNR+1] = { ^~~~~~~~~~~ In file included from ../../../src/kernel/readir.h:43, from ../../../src/kernel/topshake.c:46: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/readir.h:42, from ../../../src/kernel/topshake.c:46: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xlate.lo ../../../src/kernel/xlate.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/xlate.c -fPIC -DPIC -o .libs/xlate.o make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gctio.o ../../../src/kernel/gctio.c In file included from ../../../src/kernel/gctio.c:49: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/kernel/xmdrun.h:50, from ../../../src/kernel/gctio.c:41: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o toputil.lo ../../../src/kernel/toputil.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/toputil.c -fPIC -DPIC -o .libs/toputil.o ../../../src/kernel/toputil.c:135:13: warning: 'print_nbt' defined but not used [-Wunused-function] static void print_nbt (FILE *out,char *title,t_atomtype at, ^~~~~~~~~ In file included from ../../../src/kernel/topdirs.h:40, from ../../../src/kernel/toputil.c:45: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xutils.o ../../../src/kernel/xutils.c ../../../src/kernel/xutils.c: In function 'calc_mu_aver': ../../../src/kernel/xutils.c:65:19: warning: variable 'end' set but not used [-Wunused-but-set-variable] int i,start,end; ^~~ ../../../src/kernel/xutils.c: In function 'update_forcefield': ../../../src/kernel/xutils.c:335:10: warning: unused variable 'bDone' [-Wunused-variable] bool bDone; ^~~~~ In file included from ../../../src/kernel/xutils.c:45: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/xutils.c:45: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/xmdrun.h:50, from ../../../src/kernel/xutils.c:44: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o repl_ex.o ../../../src/kernel/repl_ex.c ../../../src/kernel/repl_ex.c: In function 'init_replica_exchange': ../../../src/kernel/repl_ex.c:111:8: warning: unused variable 'temp' [-Wunused-variable] real temp,pres; ^~~~ ../../../src/kernel/repl_ex.c: In function 'replica_exchange': ../../../src/kernel/repl_ex.c:560:20: warning: unused variable 'shift' [-Wunused-variable] int exchange=-1,shift; ^~~~~ At top level: ../../../src/kernel/repl_ex.c:544:13: warning: 'write_debug_x' defined but not used [-Wunused-function] static void write_debug_x(t_state *state) ^~~~~~~~~~~~~ In file included from ../../../src/kernel/repl_ex.c:48: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/repl_ex.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/repl_ex.c:46: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ionize.o ../../../src/kernel/ionize.c ../../../src/kernel/ionize.c: In function 'ionize': ../../../src/kernel/ionize.c:735:2: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (bL) ^~ ../../../src/kernel/ionize.c:737:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (ephot == 2) E_lost += 0.5; /* Real energy should be 2.5 KeV*/ ^~ In file included from ../../../src/kernel/ionize.c:48: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/ionize.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o luck.o ../../../src/kernel/luck.c In file included from ../../../include/statutil.h:51, from ../../../src/kernel/luck.c:43: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/kernel/luck.c:41: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o protonate.o ../../../src/kernel/protonate.c In file included from ../../../src/kernel/protonate.c:50: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/protonate.c:50: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/hackblock.h:42, from ../../../src/kernel/genhydro.h:41, from ../../../src/kernel/protonate.c:47: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/genhydro.h:40, from ../../../src/kernel/protonate.c:47: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/kernel/protonate.c:45: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/kernel/protonate.c:43: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o do_gct.o ../../../src/kernel/do_gct.c ../../../src/kernel/do_gct.c: In function 'init_coupling': ../../../src/kernel/do_gct.c:63:19: warning: unused variable 'atj' [-Wunused-variable] int ati,atj; ^~~ ../../../src/kernel/do_gct.c:63:15: warning: unused variable 'ati' [-Wunused-variable] int ati,atj; ^~~ ../../../src/kernel/do_gct.c:62:26: warning: unused variable 'j' [-Wunused-variable] int i,nc,index,j; ^ ../../../src/kernel/do_gct.c:62:20: warning: unused variable 'index' [-Wunused-variable] int i,nc,index,j; ^~~~~ ../../../src/kernel/do_gct.c:62:17: warning: unused variable 'nc' [-Wunused-variable] int i,nc,index,j; ^~ ../../../src/kernel/do_gct.c:62:15: warning: unused variable 'i' [-Wunused-variable] int i,nc,index,j; ^ ../../../src/kernel/do_gct.c: In function 'gprod': ../../../src/kernel/do_gct.c:343:8: warning: unused variable 'i' [-Wunused-variable] int i; ^ ../../../src/kernel/do_gct.c: In function 'do_coupling': ../../../src/kernel/do_gct.c:489:15: warning: unused variable 'bTest' [-Wunused-variable] bool bTest,bPrint; ^~~~~ ../../../src/kernel/do_gct.c:487:59: warning: unused variable 'xi12' [-Wunused-variable] real Epol,Eintern,Virial,muabs,xiH=-1,xiS=-1,xi6,xi12; ^~~~ ../../../src/kernel/do_gct.c:487:55: warning: unused variable 'xi6' [-Wunused-variable] real Epol,Eintern,Virial,muabs,xiH=-1,xiS=-1,xi6,xi12; ^~~ ../../../src/kernel/do_gct.c:486:32: warning: unused variable 'ffc' [-Wunused-variable] real ff6,ff12,ffa,ffb,ffc,ffq,factor,dt,mu_ind; ^~~ ../../../src/kernel/do_gct.c:486:28: warning: unused variable 'ffb' [-Wunused-variable] real ff6,ff12,ffa,ffb,ffc,ffq,factor,dt,mu_ind; ^~~ ../../../src/kernel/do_gct.c:486:24: warning: unused variable 'ffa' [-Wunused-variable] real ff6,ff12,ffa,ffb,ffc,ffq,factor,dt,mu_ind; ^~~ ../../../src/kernel/do_gct.c:485:60: warning: unused variable 'rmsf' [-Wunused-variable] real deviation[eoObsNR],prdev[eoObsNR],epot0,dist,rmsf; ^~~~ At top level: ../../../src/kernel/do_gct.c:457:13: warning: 'dump_fm' defined but not used [-Wunused-function] static void dump_fm(FILE *fp,int n,real f[],char *s) ^~~~~~~ In file included from ../../../src/kernel/do_gct.c:50: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../include/pull.h:44, from ../../../include/mdrun.h:56, from ../../../src/kernel/do_gct.c:48: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../include/pull.h:44, from ../../../include/mdrun.h:56, from ../../../src/kernel/do_gct.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/xmdrun.h:50, from ../../../src/kernel/do_gct.c:41: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o genalg.o ../../../src/kernel/genalg.c ../../../src/kernel/genalg.c: In function 'update_ga': ../../../src/kernel/genalg.c:197:12: warning: unused variable 'j' [-Wunused-variable] int i, j, L, n; /* counting variables */ ^ In file included from ../../../src/kernel/genalg.c:75: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/genalg.c:75: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gen_vsite.lo ../../../src/kernel/gen_vsite.c mkdir .libs x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/gen_vsite.c -fPIC -DPIC -o .libs/gen_vsite.o ../../../src/kernel/gen_vsite.c: In function 'read_vsite_database': ../../../src/kernel/gen_vsite.c:150:34: warning: unused variable 'prevdir' [-Wunused-variable] int i,j,n,k,nvsite,ntop,curdir,prevdir; ^~~~~~~ ../../../src/kernel/gen_vsite.c:150:9: warning: unused variable 'j' [-Wunused-variable] int i,j,n,k,nvsite,ntop,curdir,prevdir; ^ ../../../src/kernel/gen_vsite.c: In function 'add_vsites': ../../../src/kernel/gen_vsite.c:477:33: warning: unused variable 'bb' [-Wunused-variable] int i,j,ftype,other,moreheavy,bb; ^~ ../../../src/kernel/gen_vsite.c: In function 'gen_vsites_6ring': ../../../src/kernel/gen_vsite.c:560:32: warning: variable 'yCE2' set but not used [-Wunused-but-set-variable] real xCG,yCG,xCE1,yCE1,xCE2,yCE2; ^~~~ ../../../src/kernel/gen_vsite.c:560:27: warning: variable 'xCE2' set but not used [-Wunused-but-set-variable] real xCG,yCG,xCE1,yCE1,xCE2,yCE2; ^~~~ ../../../src/kernel/gen_vsite.c:560:22: warning: variable 'yCE1' set but not used [-Wunused-but-set-variable] real xCG,yCG,xCE1,yCE1,xCE2,yCE2; ^~~~ ../../../src/kernel/gen_vsite.c:560:17: warning: variable 'xCE1' set but not used [-Wunused-but-set-variable] real xCG,yCG,xCE1,yCE1,xCE2,yCE2; ^~~~ ../../../src/kernel/gen_vsite.c:560:13: warning: variable 'yCG' set but not used [-Wunused-but-set-variable] real xCG,yCG,xCE1,yCE1,xCE2,yCE2; ^~~ ../../../src/kernel/gen_vsite.c: In function 'calc_vsite3_param': ../../../src/kernel/gen_vsite.c:693:13: warning: variable 'b_ik' set but not used [-Wunused-but-set-variable] real b_ij,b_ik; ^~~~ ../../../src/kernel/gen_vsite.c:693:8: warning: variable 'b_ij' set but not used [-Wunused-but-set-variable] real b_ij,b_ik; ^~~~ ../../../src/kernel/gen_vsite.c: In function 'gen_vsites_trp': ../../../src/kernel/gen_vsite.c:741:12: warning: unused variable 'c' [-Wunused-variable] real a,b,c[MAXFORCEPARAM]; ^ ../../../src/kernel/gen_vsite.c:740:14: warning: unused variable 'mtot' [-Wunused-variable] real mwtot,mtot,mM[NMASS],dCBM1,dCBM2,dM1M2; ^~~~ ../../../src/kernel/gen_vsite.c:740:8: warning: unused variable 'mwtot' [-Wunused-variable] real mwtot,mtot,mM[NMASS],dCBM1,dCBM2,dM1M2; ^~~~~ ../../../src/kernel/gen_vsite.c:738:8: warning: unused variable 'xM' [-Wunused-variable] real xM[NMASS]; ^~ ../../../src/kernel/gen_vsite.c:735:8: warning: variable 'a_CB_CG_CD1' set but not used [-Wunused-but-set-variable] real a_CB_CG_CD1,a_CD2_CG_CD1,a_CE2_CZ2_HZ2,a_CZ2_CH2_HH2; ^~~~~~~~~~~ ../../../src/kernel/gen_vsite.c:729:20: warning: unused variable 'dist' [-Wunused-variable] real lineA,lineB,dist; ^~~~ ../../../src/kernel/gen_vsite.c:729:14: warning: variable 'lineB' set but not used [-Wunused-but-set-variable] real lineA,lineB,dist; ^~~~~ ../../../src/kernel/gen_vsite.c:728:32: warning: unused variable 'I' [-Wunused-variable] real xcom[NMASS],ycom[NMASS],I,alpha; ^ ../../../src/kernel/gen_vsite.c: In function 'gen_vsites_tyr': ../../../src/kernel/gen_vsite.c:968:8: warning: unused variable 'vmass' [-Wunused-variable] real vmass,vdist,mM; ^~~~~ ../../../src/kernel/gen_vsite.c: In function 'do_vsites': ../../../src/kernel/gen_vsite.c:1332:29: warning: unused variable 'bb' [-Wunused-variable] int Hatoms[4],heavies[4],bb; ^~ In file included from ../../../src/kernel/gen_vsite.c:48: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/gen_vsite.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/hackblock.h:41, from ../../../src/kernel/gen_vsite.h:43, from ../../../src/kernel/gen_vsite.c:44: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/kernel/gen_vsite.h:41, from ../../../src/kernel/gen_vsite.c:44: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o topio.lo ../../../src/kernel/topio.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/topio.c -fPIC -DPIC -o .libs/topio.o ../../../src/kernel/topio.c: In function 'read_topol': ../../../src/kernel/topio.c:474:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation] else ^~~~ ../../../src/kernel/topio.c:476:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' break; ^~~~~ ../../../src/kernel/topio.c:314:15: warning: unused variable 'block' [-Wunused-variable] t_topology *block=NULL; ^~~~~ In file included from ../../../src/kernel/topio.h:41, from ../../../src/kernel/topio.c:66: At top level: ../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable] static const char *couple_lam[ecouplamNR+1] = { ^~~~~~~~~~ ../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable] static const char *constraints[eshNR+1] = { ^~~~~~~~~~~ In file included from ../../../src/kernel/readir.h:42, from ../../../src/kernel/topio.h:41, from ../../../src/kernel/topio.c:66: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/kernel/vsite_parm.h:41, from ../../../src/kernel/topio.c:59: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o tpbcmp.lo ../../../src/kernel/tpbcmp.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/tpbcmp.c -fPIC -DPIC -o .libs/tpbcmp.o ../../../src/kernel/tpbcmp.c: In function 'cmp_block': ../../../src/kernel/tpbcmp.c:242:11: warning: unused variable 'k' [-Wunused-variable] int i,j,k; ^ ../../../src/kernel/tpbcmp.c:242:9: warning: unused variable 'j' [-Wunused-variable] int i,j,k; ^ ../../../src/kernel/tpbcmp.c:242:7: warning: unused variable 'i' [-Wunused-variable] int i,j,k; ^ ../../../src/kernel/tpbcmp.c: In function 'cmp_blocka': ../../../src/kernel/tpbcmp.c:252:11: warning: unused variable 'k' [-Wunused-variable] int i,j,k; ^ ../../../src/kernel/tpbcmp.c:252:9: warning: unused variable 'j' [-Wunused-variable] int i,j,k; ^ ../../../src/kernel/tpbcmp.c:252:7: warning: unused variable 'i' [-Wunused-variable] int i,j,k; ^ ../../../src/kernel/tpbcmp.c: In function 'cmp_atom': ../../../src/kernel/tpbcmp.c:265:8: warning: unused variable 'buf' [-Wunused-variable] char buf[256]; ^~~ ../../../src/kernel/tpbcmp.c:264:8: warning: unused variable 'i' [-Wunused-variable] int i; ^ ../../../src/kernel/tpbcmp.c: In function 'cmp_top': ../../../src/kernel/tpbcmp.c:302:7: warning: unused variable 'i' [-Wunused-variable] int i; ^ ../../../src/kernel/tpbcmp.c: In function 'comp_tpx': ../../../src/kernel/tpbcmp.c:567:15: warning: unused variable 'sh' [-Wunused-variable] t_tpxheader sh[2]; ^~ ../../../src/kernel/tpbcmp.c: In function 'comp_enx': ../../../src/kernel/tpbcmp.c:723:38: warning: unused variable 'buf' [-Wunused-variable] char **enm1=NULL,**enm2=NULL,buf[256]; ^~~ ../../../src/kernel/tpbcmp.c:721:36: warning: unused variable 'block' [-Wunused-variable] int in1,in2,nre,nre1,nre2,block; ^~~~~ At top level: ../../../src/kernel/tpbcmp.c:77:13: warning: 'cmp_uc' defined but not used [-Wunused-function] static void cmp_uc(FILE *fp,char *s,int index,unsigned char i1,unsigned char i2) ^~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/kernel/tpbcmp.c:48: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nm2type.o ../../../src/kernel/nm2type.c ../../../src/kernel/nm2type.c: In function 'rd_nm2type': ../../../src/kernel/nm2type.c:72:20: warning: unused variable 'blen' [-Wunused-variable] double qq,mm,*blen; ^~~~ ../../../src/kernel/nm2type.c: In function 'nm2type': ../../../src/kernel/nm2type.c:160:38: warning: unused variable 'quality' [-Wunused-variable] int *bbb,*n_mask,*m_mask,**match,**quality; ^~~~~~~ In file included from ../../../src/kernel/hackblock.h:41, from ../../../src/kernel/pdb2top.h:43, from ../../../src/kernel/nm2type.c:59: At top level: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/kernel/toputil.h:40, from ../../../src/kernel/toppush.h:41, from ../../../src/kernel/nm2type.c:58: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/nm2type.c:52: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/kernel/nm2type.c:51: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/kernel/nm2type.c:44: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/kernel/nm2type.c:42: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o tpbconv.o ../../../src/kernel/tpbconv.c ../../../src/kernel/tpbconv.c: In function 'main': ../../../src/kernel/tpbconv.c:365:7: warning: unused variable 'nerror' [-Wunused-variable] int nerror = 0; ^~~~~~ ../../../src/kernel/tpbconv.c:325:17: warning: unused variable 'gopts' [-Wunused-variable] t_gromppopts *gopts; ^~~~~ ../../../src/kernel/tpbconv.c:324:21: warning: unused variable 'irnew' [-Wunused-variable] t_inputrec *ir,*irnew=NULL; ^~~~~ ../../../src/kernel/tpbconv.c:318:33: warning: unused variable 'nsteps_org' [-Wunused-variable] int i,frame,run_step,nsteps_org; ^~~~~~~~~~ In file included from ../../../src/kernel/tpbconv.c:56: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/tpbconv.c:56: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/tpbconv.c:54: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/kernel/tpbconv.c:52: ../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable] static const char *couple_lam[ecouplamNR+1] = { ^~~~~~~~~~ ../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable] static const char *constraints[eshNR+1] = { ^~~~~~~~~~~ In file included from ../../../src/kernel/readir.h:43, from ../../../src/kernel/tpbconv.c:52: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/readir.h:42, from ../../../src/kernel/tpbconv.c:52: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmxdump.o ../../../src/kernel/gmxdump.c ../../../src/kernel/gmxdump.c: In function 'list_tpx': ../../../src/kernel/gmxdump.c:146:16: warning: left-hand operand of comma expression has no effect [-Wunused-value] if (state,tpx.bF) { ^ ../../../src/kernel/gmxdump.c:99:20: warning: unused variable 'fp' [-Wunused-variable] int step,fp,indent,i,j,**gcount,atot; ^~ ../../../src/kernel/gmxdump.c: In function 'list_ene': ../../../src/kernel/gmxdump.c:314:17: warning: unused variable 'ndr' [-Wunused-variable] int in,ndr; ^~~ At top level: ../../../src/kernel/gmxdump.c:65:13: warning: 'dump_top' defined but not used [-Wunused-function] static void dump_top(FILE *fp,t_topology *top,char *tpr) ^~~~~~~~ In file included from ../../../src/kernel/gmxdump.c:47: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/kernel/gmxdump.c:46: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o x2top.o ../../../src/kernel/x2top.c ../../../src/kernel/x2top.c: In function 'set_cgnr': ../../../src/kernel/x2top.c:178:15: warning: unused variable 'mt' [-Wunused-variable] double qt=0,mt=0; ^~ ../../../src/kernel/x2top.c: In function 'set_force_const': ../../../src/kernel/x2top.c:255:7: warning: unused variable 'i' [-Wunused-variable] int i; ^ ../../../src/kernel/x2top.c: In function 'main': ../../../src/kernel/x2top.c:419:15: warning: unused variable 'scale' [-Wunused-variable] static real scale = 1.1, kb = 4e5,kt = 400,kp = 5; ^~~~~ ../../../src/kernel/x2top.c:411:14: warning: unused variable 'cutoff' [-Wunused-variable] real cutoff,qtot,mtot; ^~~~~~ ../../../src/kernel/x2top.c:408:24: warning: unused variable 'ndih' [-Wunused-variable] int i,j,k,l,m,ndih; ^~~~ ../../../src/kernel/x2top.c:408:22: warning: unused variable 'm' [-Wunused-variable] int i,j,k,l,m,ndih; ^ ../../../src/kernel/x2top.c:408:20: warning: unused variable 'l' [-Wunused-variable] int i,j,k,l,m,ndih; ^ ../../../src/kernel/x2top.c:408:18: warning: unused variable 'k' [-Wunused-variable] int i,j,k,l,m,ndih; ^ ../../../src/kernel/x2top.c:408:16: warning: unused variable 'j' [-Wunused-variable] int i,j,k,l,m,ndih; ^ ../../../src/kernel/x2top.c:408:14: warning: unused variable 'i' [-Wunused-variable] int i,j,k,l,m,ndih; ^ ../../../src/kernel/x2top.c:407:14: warning: unused variable 'nres' [-Wunused-variable] int nres; /* number of molecules? */ ^~~~ At top level: ../../../src/kernel/x2top.c:419:15: warning: 'scale' defined but not used [-Wunused-variable] static real scale = 1.1, kb = 4e5,kt = 400,kp = 5; ^~~~~ ../../../src/kernel/x2top.c:117:12: warning: 'get_atype' defined but not used [-Wunused-function] static int get_atype(char *nm) ^~~~~~~~~ ../../../src/kernel/x2top.c:80:13: warning: 'set_x_blen' defined but not used [-Wunused-function] static real set_x_blen(real scale) ^~~~~~~~~~ In file included from ../../../src/kernel/topio.h:41, from ../../../src/kernel/gen_ad.h:42, from ../../../src/kernel/x2top.c:60: ../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable] static const char *couple_lam[ecouplamNR+1] = { ^~~~~~~~~~ ../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable] static const char *constraints[eshNR+1] = { ^~~~~~~~~~~ In file included from ../../../src/kernel/hackblock.h:41, from ../../../src/kernel/pdb2top.h:43, from ../../../src/kernel/x2top.c:59: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/kernel/toputil.h:40, from ../../../src/kernel/toppush.h:41, from ../../../src/kernel/x2top.c:58: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/x2top.c:52: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/kernel/x2top.c:51: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/kernel/x2top.c:42: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/kernel/x2top.c:40: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o toppush.lo ../../../src/kernel/toppush.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/toppush.c -fPIC -DPIC -o .libs/toppush.o ../../../src/kernel/toppush.c: In function 'push_bt': ../../../src/kernel/toppush.c:573:37: warning: variable 'nrfpB' set but not used [-Wunused-but-set-variable] int i,ft,ftype,nn,nrfp,nrfpA,nrfpB; ^~~~~ ../../../src/kernel/toppush.c: In function 'push_dihedraltype': ../../../src/kernel/toppush.c:661:37: warning: variable 'nrfpB' set but not used [-Wunused-but-set-variable] int i,ft,ftype,nn,nrfp,nrfpA,nrfpB,nral; ^~~~~ ../../../src/kernel/toppush.c: In function 'push_nbt': ../../../src/kernel/toppush.c:778:17: warning: unused variable 'sig6' [-Wunused-variable] real cr[4],sig6; ^~~~ ../../../src/kernel/toppush.c:776:23: warning: unused variable 'atnr' [-Wunused-variable] int i,f,n,ftype,atnr,nrfp; ^~~~ ../../../src/kernel/toppush.c: In function 'push_atom_now': ../../../src/kernel/toppush.c:871:7: warning: unused variable 'j' [-Wunused-variable] int j,resnr_diff=-1; ^ ../../../src/kernel/toppush.c: In function 'push_bond': ../../../src/kernel/toppush.c:1234:18: warning: unused variable 'paramB' [-Wunused-variable] t_param param,paramB,*param_defA,*param_defB; ^~~~~~ In file included from ../../../src/kernel/toppush.c:51: At top level: ../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable] static const char *couple_lam[ecouplamNR+1] = { ^~~~~~~~~~ ../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable] static const char *constraints[eshNR+1] = { ^~~~~~~~~~~ In file included from ../../../src/kernel/readir.h:42, from ../../../src/kernel/toppush.c:51: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/kernel/toputil.h:40, from ../../../src/kernel/toppush.c:48: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ ../../../src/kernel/toppush.c: In function 'push_at': ../../../src/kernel/toppush.c:446:41: warning: '%s' directive writing up to 4095 bytes into a region of size 236 [-Wformat-overflow=] sprintf(errbuf,"Overriding atomtype %s",type); ^~ ~~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../src/kernel/toppush.c:43: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 21 and 4116 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmxcheck.o ../../../src/kernel/gmxcheck.c ../../../src/kernel/gmxcheck.c: In function 'tpx2system': ../../../src/kernel/gmxcheck.c:90:7: warning: unused variable 'i' [-Wunused-variable] int i,nmol,nvsite=0; ^ ../../../src/kernel/gmxcheck.c: In function 'tpx2methods': ../../../src/kernel/gmxcheck.c:140:15: warning: unused variable 'i' [-Wunused-variable] int i,step; ^ ../../../src/kernel/gmxcheck.c:136:15: warning: unused variable 'sh' [-Wunused-variable] t_tpxheader sh; ^~ ../../../src/kernel/gmxcheck.c: In function 'chk_bonds': ../../../src/kernel/gmxcheck.c:202:26: warning: variable 'devtot' set but not used [-Wunused-but-set-variable] real b0,blen,deviation,devtot; ^~~~~~ ../../../src/kernel/gmxcheck.c:201:14: warning: unused variable 'i' [-Wunused-variable] int ftype,i,k,ai,aj,type; ^ ../../../src/kernel/gmxcheck.c: In function 'chk_trj': ../../../src/kernel/gmxcheck.c:252:35: warning: unused variable 'bOK' [-Wunused-variable] bool bShowTimestep=TRUE,bOK,newline=FALSE; ^~~ ../../../src/kernel/gmxcheck.c:251:40: warning: unused variable 'prec' [-Wunused-variable] real rdum,t,tt,old_t1,old_t2,prec; ^~~~ ../../../src/kernel/gmxcheck.c:251:23: warning: unused variable 'tt' [-Wunused-variable] real rdum,t,tt,old_t1,old_t2,prec; ^~ ../../../src/kernel/gmxcheck.c:251:16: warning: unused variable 'rdum' [-Wunused-variable] real rdum,t,tt,old_t1,old_t2,prec; ^~~~ ../../../src/kernel/gmxcheck.c:250:16: warning: variable 'fpos' set but not used [-Wunused-but-set-variable] off_t fpos; ^~~~ ../../../src/kernel/gmxcheck.c: In function 'chk_ndx': ../../../src/kernel/gmxcheck.c:526:10: warning: unused variable 'j' [-Wunused-variable] int i,j; ^ ../../../src/kernel/gmxcheck.c: In function 'chk_enx': ../../../src/kernel/gmxcheck.c:550:25: warning: unused variable 'ndr' [-Wunused-variable] int in,nre,fnr,ndr; ^~~ In file included from ../../../src/kernel/gmxcheck.c:57: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/gmxcheck.c:57: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/gmxcheck.c:48: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/kernel/gmxcheck.c:47: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o md.o ../../../src/kernel/md.c ../../../src/kernel/md.c: In function 'mdrunner': ../../../src/kernel/md.c:140:15: warning: unused variable 'gro' [-Wunused-variable] char *gro; ^~~ ../../../src/kernel/md.c:139:45: warning: unused variable 'nalloc' [-Wunused-variable] int i,m,nChargePerturbed=-1,status,nalloc; ^~~~~~ ../../../src/kernel/md.c:139:16: warning: unused variable 'm' [-Wunused-variable] int i,m,nChargePerturbed=-1,status,nalloc; ^ ../../../src/kernel/md.c:139:14: warning: unused variable 'i' [-Wunused-variable] int i,m,nChargePerturbed=-1,status,nalloc; ^ ../../../src/kernel/md.c:128:20: warning: unused variable 'tmpr2' [-Wunused-variable] real tmpr1,tmpr2; ^~~~~ ../../../src/kernel/md.c:128:14: warning: unused variable 'tmpr1' [-Wunused-variable] real tmpr1,tmpr2; ^~~~~ ../../../src/kernel/md.c: In function 'do_md': ../../../src/kernel/md.c:533:16: warning: unused variable 'grpname' [-Wunused-variable] char *grpname; ^~~~~~~ ../../../src/kernel/md.c:525:15: warning: unused variable 'timestep' [-Wunused-variable] real timestep=0; ^~~~~~~~ In file included from ../../../include/pppm.h:46, from ../../../src/kernel/md.c:69: At top level: ../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function] static t_complex cdiv(t_complex teller,t_complex noemer) ^~~~ ../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function] static t_complex csub(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function] static t_complex cadd(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function] static t_complex rcexp(real r) ^~~~~ ../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable] static t_complex cnul = { 0.0, 0.0 }; ^~~~ In file included from ../../../include/statutil.h:51, from ../../../src/kernel/md.c:46: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/kernel/md.c:45: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/md.c:45: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o readir.lo ../../../src/kernel/readir.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/readir.c -fPIC -DPIC -o .libs/readir.o ../../../src/kernel/readir.c: In function 'do_index': ../../../src/kernel/readir.c:1427:38: warning: variable 'nbTS' set but not used [-Wunused-but-set-variable] nSAon,nSAoff,nSAsteps,nQMg,nbOPT,nbTS; ^~~~ ../../../src/kernel/readir.c:1427:32: warning: variable 'nbOPT' set but not used [-Wunused-but-set-variable] nSAon,nSAoff,nSAsteps,nQMg,nbOPT,nbTS; ^~~~~ ../../../src/kernel/readir.c:1427:18: warning: variable 'nSAsteps' set but not used [-Wunused-but-set-variable] nSAon,nSAoff,nSAsteps,nQMg,nbOPT,nbTS; ^~~~~~~~ ../../../src/kernel/readir.c:1427:11: warning: variable 'nSAoff' set but not used [-Wunused-but-set-variable] nSAon,nSAoff,nSAsteps,nQMg,nbOPT,nbTS; ^~~~~~ ../../../src/kernel/readir.c:1427:5: warning: variable 'nSAon' set but not used [-Wunused-but-set-variable] nSAon,nSAoff,nSAsteps,nQMg,nbOPT,nbTS; ^~~~~ ../../../src/kernel/readir.c:1426:61: warning: variable 'nCASelec' set but not used [-Wunused-but-set-variable] int nQMmethod,nQMbasis,nQMcharge,nQMmult,nbSH,nCASorb,nCASelec, ^~~~~~~~ ../../../src/kernel/readir.c:1426:53: warning: variable 'nCASorb' set but not used [-Wunused-but-set-variable] int nQMmethod,nQMbasis,nQMcharge,nQMmult,nbSH,nCASorb,nCASelec, ^~~~~~~ ../../../src/kernel/readir.c:1426:48: warning: variable 'nbSH' set but not used [-Wunused-but-set-variable] int nQMmethod,nQMbasis,nQMcharge,nQMmult,nbSH,nCASorb,nCASelec, ^~~~ ../../../src/kernel/readir.c:1426:40: warning: variable 'nQMmult' set but not used [-Wunused-but-set-variable] int nQMmethod,nQMbasis,nQMcharge,nQMmult,nbSH,nCASorb,nCASelec, ^~~~~~~ ../../../src/kernel/readir.c:1426:30: warning: variable 'nQMcharge' set but not used [-Wunused-but-set-variable] int nQMmethod,nQMbasis,nQMcharge,nQMmult,nbSH,nCASorb,nCASelec, ^~~~~~~~~ ../../../src/kernel/readir.c:1424:11: warning: unused variable 'SAtime' [-Wunused-variable] real SAtime; ^~~~~~ ../../../src/kernel/readir.c: In function 'triple_check': ../../../src/kernel/readir.c:1872:17: warning: unused variable 'npct' [-Wunused-variable] int i,m,nmol,npct; ^~~~ In file included from ../../../src/kernel/readir.c:58: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/readir.c:58: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/readir.h:43, from ../../../src/kernel/readir.c:54: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/readir.c:53: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pdb2gmx.o ../../../src/kernel/pdb2gmx.c ../../../src/kernel/pdb2gmx.c:149:20: warning: 'get_cystp' defined but not used [-Wunused-function] static const char *get_cystp(int resnr) ^~~~~~~~~ In file included from ../../../src/kernel/toputil.h:40, from ../../../src/kernel/pdb2gmx.c:55: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/pdb2gmx.c:54: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/kernel/pdb2gmx.c:51: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/kernel/pdb2gmx.c:50: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/pdb2gmx.c:50: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/pdb2gmx.c:46: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ ../../../src/kernel/pdb2gmx.c: In function 'main': ../../../src/kernel/pdb2gmx.c:783:18: warning: '.rtp' directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(rtp,"%s.rtp",forcefield); ^~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../src/kernel/pdb2gmx.c:42: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 5 and 4100 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../src/kernel/pdb2gmx.c:1162:31: warning: '%s' directive writing up to 4095 bytes into a region of size 4089 [-Wformat-overflow=] sprintf(molname,"Protein%s",suffix); ^~ ~~~~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../src/kernel/pdb2gmx.c:42: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 8 and 4103 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../src/kernel/pdb2gmx.c:1176:22: warning: '_pr.itp' directive writing 7 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(posre_fn,"%s_pr.itp",buf_fn); ^~~~~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../src/kernel/pdb2gmx.c:42: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 8 and 4103 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o vsite_parm.lo ../../../src/kernel/vsite_parm.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/vsite_parm.c -fPIC -DPIC -o .libs/vsite_parm.o ../../../src/kernel/vsite_parm.c: In function 'clean_vsite_bonds': ../../../src/kernel/vsite_parm.c:862:62: warning: unused variable 'vsitetype' [-Wunused-variable] int ftype,i,j,parnr,k,l,m,n,nvsite,nOut,kept_i,vsnral,vsitetype; ^~~~~~~~~ ../../../src/kernel/vsite_parm.c:862:30: warning: unused variable 'l' [-Wunused-variable] int ftype,i,j,parnr,k,l,m,n,nvsite,nOut,kept_i,vsnral,vsitetype; ^ ../../../src/kernel/vsite_parm.c:862:22: warning: unused variable 'parnr' [-Wunused-variable] int ftype,i,j,parnr,k,l,m,n,nvsite,nOut,kept_i,vsnral,vsitetype; ^~~~~ ../../../src/kernel/vsite_parm.c: In function 'clean_vsite_angles': ../../../src/kernel/vsite_parm.c:1035:51: warning: unused variable 'vsitetype' [-Wunused-variable] int i,j,parnr,k,l,m,n,nvsite,kept_i,vsnral,vsitetype; ^~~~~~~~~ ../../../src/kernel/vsite_parm.c:1035:24: warning: unused variable 'l' [-Wunused-variable] int i,j,parnr,k,l,m,n,nvsite,kept_i,vsnral,vsitetype; ^ ../../../src/kernel/vsite_parm.c:1035:16: warning: unused variable 'parnr' [-Wunused-variable] int i,j,parnr,k,l,m,n,nvsite,kept_i,vsnral,vsitetype; ^~~~~ ../../../src/kernel/vsite_parm.c: In function 'clean_vsite_dihs': ../../../src/kernel/vsite_parm.c:1130:28: warning: unused variable 'l' [-Wunused-variable] int ftype,i,parnr,k,l,m,n,nvsite,kept_i,vsnral; ^ ../../../src/kernel/vsite_parm.c:1130:20: warning: unused variable 'parnr' [-Wunused-variable] int ftype,i,parnr,k,l,m,n,nvsite,kept_i,vsnral; ^~~~~ ../../../src/kernel/vsite_parm.c:1130:12: warning: unused variable 'ftype' [-Wunused-variable] int ftype,i,parnr,k,l,m,n,nvsite,kept_i,vsnral; ^~~~~ In file included from ../../../src/kernel/vsite_parm.c:47: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/vsite_parm.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/hackblock.h:41, from ../../../src/kernel/resall.h:41, from ../../../src/kernel/vsite_parm.c:45: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/kernel/vsite_parm.h:41, from ../../../src/kernel/vsite_parm.c:43: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o libgmxpreprocess.la add_par.lo compute_io.lo convparm.lo gen_ad.lo gen_vsite.lo genhydro.lo gmxcpp.lo gpp_atomtype.lo gpp_bond_atomtype.lo h_db.lo hackblock.lo hizzie.lo pdb2top.lo pgutil.lo readir.lo readpull.lo resall.lo sorting.lo specbond.lo ter_db.lo tomorse.lo topdirs.lo topexcl.lo topio.lo toppush.lo topshake.lo toputil.lo tpbcmp.lo vsite_parm.lo xlate.lo -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath ar cru .libs/libgmxpreprocess.a .libs/add_par.o .libs/compute_io.o .libs/convparm.o .libs/gen_ad.o .libs/gen_vsite.o .libs/genhydro.o .libs/gmxcpp.o .libs/gpp_atomtype.o .libs/gpp_bond_atomtype.o .libs/h_db.o .libs/hackblock.o .libs/hizzie.o .libs/pdb2top.o .libs/pgutil.o .libs/readir.o .libs/readpull.o .libs/resall.o .libs/sorting.o .libs/specbond.o .libs/ter_db.o .libs/tomorse.o .libs/topdirs.o .libs/topexcl.o .libs/topio.o .libs/toppush.o .libs/topshake.o .libs/toputil.o .libs/tpbcmp.o .libs/vsite_parm.o .libs/xlate.o ranlib .libs/libgmxpreprocess.a creating libgmxpreprocess.la (cd .libs && rm -f libgmxpreprocess.la && ln -s ../libgmxpreprocess.la libgmxpreprocess.la) make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o tpbconv tpbconv.o libgmxpreprocess.la ../mdlib/libmd.la ../gmxlib/libgmx.la -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/tpbconv tpbconv.o ./.libs/libgmxpreprocess.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath creating tpbconv make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o gmxcheck gmxcheck.o libgmxpreprocess.la ../mdlib/libmd.la ../gmxlib/libgmx.la -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/gmxcheck gmxcheck.o ./.libs/libgmxpreprocess.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath creating gmxcheck make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o protonate protonate.o libgmxpreprocess.la ../mdlib/libmd.la ../gmxlib/libgmx.la -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/protonate protonate.o ./.libs/libgmxpreprocess.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath creating protonate make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o mdrun glaasje.o gctio.o ionize.o do_gct.o repl_ex.o xutils.o md.o mdrun.o genalg.o libgmxpreprocess.la ../mdlib/libmd.la ../gmxlib/libgmx.la -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/mdrun glaasje.o gctio.o ionize.o do_gct.o repl_ex.o xutils.o md.o mdrun.o genalg.o ./.libs/libgmxpreprocess.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath creating mdrun make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o luck luck.o libgmxpreprocess.la ../mdlib/libmd.la ../gmxlib/libgmx.la -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/luck luck.o ./.libs/libgmxpreprocess.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath creating luck make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o gmxdump gmxdump.o libgmxpreprocess.la ../mdlib/libmd.la ../gmxlib/libgmx.la -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/gmxdump gmxdump.o ./.libs/libgmxpreprocess.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath creating gmxdump make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o pdb2gmx pdb2gmx.o libgmxpreprocess.la ../mdlib/libmd.la ../gmxlib/libgmx.la -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/pdb2gmx pdb2gmx.o ./.libs/libgmxpreprocess.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath creating pdb2gmx make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o x2top x2top.o nm2type.o libgmxpreprocess.la ../mdlib/libmd.la ../gmxlib/libgmx.la -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/x2top x2top.o nm2type.o ./.libs/libgmxpreprocess.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath creating x2top make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o grompp grompp.o libgmxpreprocess.la ../mdlib/libmd.la ../gmxlib/libgmx.la -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/grompp grompp.o ./.libs/libgmxpreprocess.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath creating grompp make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' Making all in tools make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o polynomials.lo ../../../src/tools/polynomials.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/polynomials.c -fPIC -DPIC -o .libs/polynomials.o In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/tools/polynomials.c:44: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o do_dssp.o ../../../src/tools/do_dssp.c ../../../src/tools/do_dssp.c: In function 'main': ../../../src/tools/do_dssp.c:347:16: warning: unused variable 'j' [-Wunused-variable] int i,j,natoms,nframe=0; ^ In file included from ../../../src/tools/do_dssp.c:49: At top level: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/tools/do_dssp.c:48: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/do_dssp.c:47: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pp2shift.lo ../../../src/tools/pp2shift.c mkdir .libs x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/pp2shift.c -fPIC -DPIC -o .libs/pp2shift.o In file included from ../../../src/tools/pp2shift.c:50: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/pp2shift.c:47: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o eigio.lo ../../../src/tools/eigio.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/eigio.c -fPIC -DPIC -o .libs/eigio.o In file included from ../../../src/tools/eigio.c:41: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/eigio.c:41: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o eigensolver.lo ../../../src/tools/eigensolver.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/eigensolver.c -fPIC -DPIC -o .libs/eigensolver.o ../../../src/tools/eigensolver.c: In function 'eigensolver': ../../../src/tools/eigensolver.c:65:16: warning: unused variable 'iu' [-Wunused-variable] int il,iu,m,iw0,info; ^~ ../../../src/tools/eigensolver.c:65:13: warning: unused variable 'il' [-Wunused-variable] int il,iu,m,iw0,info; ^~ ../../../src/tools/eigensolver.c: In function 'sparse_eigensolver': ../../../src/tools/eigensolver.c:296:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(i=0;i<11;i++) ^~~ ../../../src/tools/eigensolver.c:299:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' iparam[0] = 1; /* Don't use explicit shifts */ ^~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o cmat.lo ../../../src/tools/cmat.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/cmat.c -fPIC -DPIC -o .libs/cmat.o make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o lsq.lo ../../../src/tools/lsq.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/lsq.c -fPIC -DPIC -o .libs/lsq.o In file included from ../../../src/tools/lsq.c:42: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/lsq.c:42: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/tools/lsq.c:41: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlist.lo ../../../src/tools/dlist.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/dlist.c -fPIC -DPIC -o .libs/dlist.o In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/tools/dlist.c:44: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o fitahx.lo ../../../src/tools/fitahx.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/fitahx.c -fPIC -DPIC -o .libs/fitahx.o In file included from ../../../src/tools/fitahx.c:41: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/fitahx.c:41: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o levenmar.lo ../../../src/tools/levenmar.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/levenmar.c -fPIC -DPIC -o .libs/levenmar.o ../../../src/tools/levenmar.c:224:13: warning: 'free_convert_matrix' defined but not used [-Wunused-function] static void free_convert_matrix(real **b, int nrl) ^~~~~~~~~~~~~~~~~~~ ../../../src/tools/levenmar.c:208:15: warning: 'convert_matrix' defined but not used [-Wunused-function] static real **convert_matrix(real *a, int nrl, int nrh, int ncl, int nch) ^~~~~~~~~~~~~~ ../../../src/tools/levenmar.c:201:13: warning: 'free_submatrix' defined but not used [-Wunused-function] static void free_submatrix(real **b, int nrl) ^~~~~~~~~~~~~~ ../../../src/tools/levenmar.c:191:13: warning: 'free_imatrix' defined but not used [-Wunused-function] static void free_imatrix(int **m, int nrl, int nrh, int ncl) ^~~~~~~~~~~~ ../../../src/tools/levenmar.c:183:13: warning: 'free_dmatrix' defined but not used [-Wunused-function] static void free_dmatrix(double **m, int nrl, int nrh, int ncl) ^~~~~~~~~~~~ ../../../src/tools/levenmar.c:168:13: warning: 'free_dvector' defined but not used [-Wunused-function] static void free_dvector(int *v, int nl) ^~~~~~~~~~~~ ../../../src/tools/levenmar.c:141:15: warning: 'submatrix' defined but not used [-Wunused-function] static real **submatrix(real **a, int oldrl, int oldrh, int oldcl, ^~~~~~~~~ ../../../src/tools/levenmar.c:123:14: warning: 'imatrix1' defined but not used [-Wunused-function] static int **imatrix1(int nrl, int nrh, int ncl, int nch) ^~~~~~~~ ../../../src/tools/levenmar.c:106:17: warning: 'dmatrix' defined but not used [-Wunused-function] static double **dmatrix(int nrl, int nrh, int ncl, int nch) ^~~~~~~ ../../../src/tools/levenmar.c:78:16: warning: 'dvector' defined but not used [-Wunused-function] static double *dvector(int nl, int nh) ^~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o expfit.lo ../../../src/tools/expfit.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/expfit.c -fPIC -DPIC -o .libs/expfit.o In file included from ../../../src/tools/expfit.c:49: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/expfit.c:49: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/tools/expfit.c:48: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o hxprops.lo ../../../src/tools/hxprops.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/hxprops.c -fPIC -DPIC -o .libs/hxprops.o ../../../src/tools/hxprops.c: In function 'ellipticity': ../../../src/tools/hxprops.c:85:14: warning: unused variable 'Xi' [-Wunused-variable] const real Xi=1.0; ^~ In file included from ../../../src/tools/hxprops.c:46: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/hxprops.c:46: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o autocorr.lo ../../../src/tools/autocorr.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/autocorr.c -fPIC -DPIC -o .libs/autocorr.o In file included from ../../../include/gmx_fft.h:41, from ../../../src/tools/correl.h:40, from ../../../src/tools/autocorr.c:53: ../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function] static t_complex cdiv(t_complex teller,t_complex noemer) ^~~~ ../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function] static t_complex csub(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function] static t_complex cadd(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function] static t_complex rcexp(real r) ^~~~~ ../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable] static t_complex cnul = { 0.0, 0.0 }; ^~~~ In file included from ../../../src/tools/autocorr.c:51: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/autocorr.c:51: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/tools/autocorr.c:48: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_bond.lo ../../../src/tools/gmx_bond.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_bond.c -fPIC -DPIC -o .libs/gmx_bond.o In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_bond.c:51: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_bond.c:48: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_bond.c:45: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_bond.c:45: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o anadih.lo ../../../src/tools/anadih.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/anadih.c -fPIC -DPIC -o .libs/anadih.o In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/tools/anadih.c:51: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/anadih.c:50: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/anadih.c:50: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_analyze.lo ../../../src/tools/gmx_analyze.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_analyze.c -fPIC -DPIC -o .libs/gmx_analyze.o ../../../src/tools/gmx_analyze.c: In function 'luzar_correl': ../../../src/tools/gmx_analyze.c:514:8: warning: unused variable 'weight' [-Wunused-variable] real weight,d2; ^~~~~~ ../../../src/tools/gmx_analyze.c:512:14: warning: unused variable 'tol' [-Wunused-variable] const real tol = 1e-8; ^~~ ../../../src/tools/gmx_analyze.c: In function 'gmx_analyze': ../../../src/tools/gmx_analyze.c:744:63: warning: unused variable 'bLuzarError' [-Wunused-variable] static bool bIntegrate=FALSE,bRegression=FALSE,bLuzar=FALSE,bLuzarError=FALSE; ^~~~~~~~~~~ At top level: ../../../src/tools/gmx_analyze.c:744:63: warning: 'bLuzarError' defined but not used [-Wunused-variable] ../../../src/tools/gmx_analyze.c:273:13: warning: 'anal_ee' defined but not used [-Wunused-function] static real anal_ee(real *parm,real T,real t) ^~~~~~~ In file included from ../../../src/tools/gmx_analyze.c:48: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_analyze.c:47: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_analyze.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_analyze.c:41: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_bundle.lo ../../../src/tools/gmx_bundle.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_bundle.c -fPIC -DPIC -o .libs/gmx_bundle.o ../../../src/tools/gmx_bundle.c: In function 'dump_axes': ../../../src/tools/gmx_bundle.c:141:17: warning: unused variable 'end' [-Wunused-variable] int i,end; ^~~ ../../../src/tools/gmx_bundle.c: In function 'gmx_bundle': ../../../src/tools/gmx_bundle.c:210:16: warning: unused variable 'j' [-Wunused-variable] int i,j,gnx[MAX_ENDS]; ^ ../../../src/tools/gmx_bundle.c:208:14: warning: unused variable 'natoms' [-Wunused-variable] int natoms; ^~~~~~ ../../../src/tools/gmx_bundle.c:198:15: warning: unused variable 'out' [-Wunused-variable] FILE *out,*flen,*fdist,*fz,*ftilt,*ftiltr,*ftiltl; ^~~ In file included from ../../../src/tools/gmx_bundle.c:48: At top level: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_bundle.c:47: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_bundle.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_bundle.c:42: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_angle.lo ../../../src/tools/gmx_angle.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_angle.c -fPIC -DPIC -o .libs/gmx_angle.o ../../../src/tools/gmx_angle.c: In function 'gmx_angle': ../../../src/tools/gmx_angle.c:147:14: warning: unused variable 'buf' [-Wunused-variable] char buf[80]; ^~~ ../../../src/tools/gmx_angle.c:143:38: warning: unused variable 'fraction' [-Wunused-variable] real t,aa,aver,aver2,aversig,fraction; /* fraction trans dihedrals */ ^~~~~~~~ ../../../src/tools/gmx_angle.c:143:16: warning: unused variable 'aa' [-Wunused-variable] real t,aa,aver,aver2,aversig,fraction; /* fraction trans dihedrals */ ^~ ../../../src/tools/gmx_angle.c:143:14: warning: unused variable 't' [-Wunused-variable] real t,aa,aver,aver2,aversig,fraction; /* fraction trans dihedrals */ ^ ../../../src/tools/gmx_angle.c:138:55: warning: unused variable 'angind' [-Wunused-variable] int i,j,total,nangles,natoms,nat2,first,last,angind; ^~~~~~ ../../../src/tools/gmx_angle.c:138:39: warning: unused variable 'nat2' [-Wunused-variable] int i,j,total,nangles,natoms,nat2,first,last,angind; ^~~~ ../../../src/tools/gmx_angle.c:138:32: warning: unused variable 'natoms' [-Wunused-variable] int i,j,total,nangles,natoms,nat2,first,last,angind; ^~~~~~ ../../../src/tools/gmx_angle.c:138:18: warning: unused variable 'total' [-Wunused-variable] int i,j,total,nangles,natoms,nat2,first,last,angind; ^~~~~ ../../../src/tools/gmx_angle.c:135:21: warning: unused variable 'Jc' [-Wunused-variable] real maxang,Jc,S2,norm_fac,maxstat; ^~ ../../../src/tools/gmx_angle.c:132:14: warning: unused variable 'status' [-Wunused-variable] int status,isize; ^~~~~~ ../../../src/tools/gmx_angle.c:131:14: warning: unused variable 'tmp' [-Wunused-variable] real tmp,dt; ^~~ In file included from ../../../src/tools/gmx_angle.c:49: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_angle.c:49: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/tools/gmx_angle.c:48: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_angle.c:47: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nsc.lo ../../../src/tools/nsc.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/nsc.c -fPIC -DPIC -o .libs/nsc.o ../../../src/tools/nsc.c: In function 'make_unsp': ../../../src/tools/nsc.c:446:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (xpunsp) free(xpunsp); if (ico_wk) free(ico_wk); ^~ ../../../src/tools/nsc.c:446:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (xpunsp) free(xpunsp); if (ico_wk) free(ico_wk); ^~ ../../../src/tools/nsc.c: In function 'nsc_dclm_pbc': ../../../src/tools/nsc.c:652:21: warning: unused variable 'm' [-Wunused-variable] int ix,iy,iz,m; ^ ../../../src/tools/nsc.c:551:16: warning: unused variable 'jat_xx' [-Wunused-variable] int iat_xx,jat_xx; ^~~~~~ In file included from ../../../src/tools/nsc.c:48: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/nsc.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_density.lo ../../../src/tools/gmx_density.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_density.c -fPIC -DPIC -o .libs/gmx_density.o ../../../src/tools/gmx_density.c: In function 'calc_density': ../../../src/tools/gmx_density.c:261:9: warning: unused variable 'buf' [-Wunused-variable] char *buf; /* for tmp. keeping atomname */ ^~~ ../../../src/tools/gmx_density.c:254:9: warning: unused variable 'j' [-Wunused-variable] i,j,n, /* loop indices */ ^ ../../../src/tools/gmx_density.c:253:9: warning: unused variable 'slCount' [-Wunused-variable] **slCount, /* nr. of atoms in one slice for a group */ ^~~~~~~ In file included from ../../../src/tools/gmx_density.c:52: At top level: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_density.c:49: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_density.c:49: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/tools/gmx_density.c:48: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_dih.lo ../../../src/tools/gmx_dih.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_dih.c -fPIC -DPIC -o .libs/gmx_dih.o ../../../src/tools/gmx_dih.c:55:13: warning: 'dump_dih' defined but not used [-Wunused-function] static void dump_dih(int nframes,char *title,real time[],real dih[]) ^~~~~~~~ In file included from ../../../src/tools/gmx_dih.c:51: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_dih.c:51: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_dih.c:46: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_dih.c:43: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ ../../../src/tools/gmx_dih.c: In function 'gmx_dih': ../../../src/tools/gmx_dih.c:265:22: warning: '%d' directive writing between 1 and 10 bytes into a region of size 6 [-Wformat-overflow=] sprintf(buf,"dih-%d",i); ^~ ../../../src/tools/gmx_dih.c:265:17: note: directive argument in the range [0, 2147483647] sprintf(buf,"dih-%d",i); ^~~~~~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../src/tools/gmx_dih.c:41: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 6 and 15 bytes into a destination of size 10 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_confrms.lo ../../../src/tools/gmx_confrms.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_confrms.c -fPIC -DPIC -o .libs/gmx_confrms.o ../../../src/tools/gmx_confrms.c: In function 'find_matching_names': ../../../src/tools/gmx_confrms.c:252:35: warning: unused variable 'atnm2' [-Wunused-variable] char *resnm1, *resnm2, *atnm1, *atnm2; ^~~~~ ../../../src/tools/gmx_confrms.c:252:27: warning: unused variable 'atnm1' [-Wunused-variable] char *resnm1, *resnm2, *atnm1, *atnm2; ^~~~~ ../../../src/tools/gmx_confrms.c:252:18: warning: unused variable 'resnm2' [-Wunused-variable] char *resnm1, *resnm2, *atnm1, *atnm2; ^~~~~~ ../../../src/tools/gmx_confrms.c:252:9: warning: unused variable 'resnm1' [-Wunused-variable] char *resnm1, *resnm2, *atnm1, *atnm2; ^~~~~~ ../../../src/tools/gmx_confrms.c:249:7: warning: unused variable 'r' [-Wunused-variable] int r,rnr1, rnr2, prnr1, prnr2; ^ ../../../src/tools/gmx_confrms.c:247:7: warning: unused variable 'i' [-Wunused-variable] int i, i1, i2, ii1, ii2, m1, m2; ^ ../../../src/tools/gmx_confrms.c: In function 'gmx_confrms': ../../../src/tools/gmx_confrms.c:407:17: warning: unused variable 'tmas2' [-Wunused-variable] real tmas1,tmas2; ^~~~~ ../../../src/tools/gmx_confrms.c:407:11: warning: unused variable 'tmas1' [-Wunused-variable] real tmas1,tmas2; ^~~~~ ../../../src/tools/gmx_confrms.c:404:13: warning: unused variable 'j' [-Wunused-variable] int i,j,m; ^ In file included from ../../../src/tools/gmx_confrms.c:56: At top level: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/tools/gmx_confrms.c:50: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_confrms.c:50: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_confrms.c:47: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_confrms.c:46: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_covar.lo ../../../src/tools/gmx_covar.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_covar.c -fPIC -DPIC -o .libs/gmx_covar.o ../../../src/tools/gmx_covar.c: In function 'gmx_covar': ../../../src/tools/gmx_covar.c:120:30: warning: unused variable 'count' [-Wunused-variable] int natoms,nat,ndim,count,nframes0,nframes,nlevels; ^~~~~ ../../../src/tools/gmx_covar.c:119:24: warning: unused variable 'step' [-Wunused-variable] int ntopatoms,step; ^~~~ ../../../src/tools/gmx_covar.c:119:14: warning: unused variable 'ntopatoms' [-Wunused-variable] int ntopatoms,step; ^~~~~~~~~ ../../../src/tools/gmx_covar.c:109:21: warning: unused variable 'trjout' [-Wunused-variable] int status,trjout; ^~~~~~ In file included from ../../../src/tools/gmx_covar.c:50: At top level: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_covar.c:48: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_covar.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_covar.c:43: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_densmap.lo ../../../src/tools/gmx_densmap.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_densmap.c -fPIC -DPIC -o .libs/gmx_densmap.o In file included from ../../../src/tools/gmx_densmap.c:50: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_densmap.c:48: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_densmap.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_densmap.c:43: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_dielectric.lo ../../../src/tools/gmx_dielectric.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_dielectric.c -fPIC -DPIC -o .libs/gmx_dielectric.o ../../../src/tools/gmx_dielectric.c: In function 'calc_nbegin': ../../../src/tools/gmx_dielectric.c:60:11: warning: unused variable 'dtt' [-Wunused-variable] real dt,dtt; ^~~ ../../../src/tools/gmx_dielectric.c:60:8: warning: unused variable 'dt' [-Wunused-variable] real dt,dtt; ^~ In file included from ../../../src/tools/gmx_dielectric.c:53: At top level: ../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function] static t_complex csub(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function] static t_complex cadd(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function] static t_complex rcexp(real r) ^~~~~ ../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable] static t_complex cnul = { 0.0, 0.0 }; ^~~~ In file included from ../../../src/tools/gmx_dielectric.c:51: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/tools/gmx_dielectric.c:47: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_dielectric.c:44: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_spatial.lo ../../../src/tools/gmx_spatial.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_spatial.c -fPIC -DPIC -o .libs/gmx_spatial.o ../../../src/tools/gmx_spatial.c: In function 'gmx_spatial': ../../../src/tools/gmx_spatial.c:131:21: warning: unused variable 'shx' [-Wunused-variable] rvec *xtop,*shx[26]; ^~~ ../../../src/tools/gmx_spatial.c:103:15: warning: unused variable 'bSHIFT' [-Wunused-variable] static bool bSHIFT=FALSE; ^~~~~~ At top level: ../../../src/tools/gmx_spatial.c:103:15: warning: 'bSHIFT' defined but not used [-Wunused-variable] In file included from ../../../src/tools/gmx_spatial.c:44: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_spatial.c:43: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_spatial.c:43: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_spatial.c:40: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ ../../../src/tools/gmx_spatial.c:38:14: warning: 'SRCID_template_c' defined but not used [-Wunused-variable] static char *SRCID_template_c = "$Id$"; ^~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_dist.lo ../../../src/tools/gmx_dist.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_dist.c -fPIC -DPIC -o .libs/gmx_dist.o ../../../src/tools/gmx_dist.c: In function 'gmx_dist': ../../../src/tools/gmx_dist.c:101:21: warning: unused variable 'fplt' [-Wunused-variable] FILE *fp=NULL,*fplt=NULL; ^~~~ ../../../src/tools/gmx_dist.c:93:11: warning: unused variable 'aid' [-Wunused-variable] atom_id aid; ^~~ ../../../src/tools/gmx_dist.c:87:17: warning: unused variable 'v' [-Wunused-variable] rvec *x=NULL,*v=NULL,dx; ^ In file included from ../../../src/tools/gmx_dist.c:48: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_dist.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_dist.c:46: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_dist.c:45: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_current.lo ../../../src/tools/gmx_current.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_current.c -fPIC -DPIC -o .libs/gmx_current.o ../../../src/tools/gmx_current.c: In function 'calc_mjdsp': ../../../src/tools/gmx_current.c:266:7: warning: unused variable 'rfr' [-Wunused-variable] real rfr; ^~~ ../../../src/tools/gmx_current.c:265:8: warning: unused variable 'rtmp' [-Wunused-variable] real rtmp; ^~~~ ../../../src/tools/gmx_current.c: In function 'dielectric': ../../../src/tools/gmx_current.c:338:8: warning: variable 'rest' set but not used [-Wunused-but-set-variable] real rest=0.0; ^~~~ ../../../src/tools/gmx_current.c:326:8: warning: unused variable 'qtmp' [-Wunused-variable] real qtmp; ^~~~ ../../../src/tools/gmx_current.c:308:13: warning: unused variable 'dm_d' [-Wunused-variable] real dm_s,dm_d; ^~~~ ../../../src/tools/gmx_current.c:308:8: warning: unused variable 'dm_s' [-Wunused-variable] real dm_s,dm_d; ^~~~ ../../../src/tools/gmx_current.c:298:8: warning: unused variable 'rfr' [-Wunused-variable] real rfr=0.0; ^~~ ../../../src/tools/gmx_current.c:293:33: warning: variable 'itrust' set but not used [-Wunused-but-set-variable] int valloc,nalloc,nfr,nvfr,m,itrust=0; ^~~~~~ ../../../src/tools/gmx_current.c:293:31: warning: unused variable 'm' [-Wunused-variable] int valloc,nalloc,nfr,nvfr,m,itrust=0; ^ ../../../src/tools/gmx_current.c:292:17: warning: unused variable 'f' [-Wunused-variable] int i,j,k,l,f; ^ ../../../src/tools/gmx_current.c:292:15: warning: unused variable 'l' [-Wunused-variable] int i,j,k,l,f; ^ ../../../src/tools/gmx_current.c:292:13: warning: unused variable 'k' [-Wunused-variable] int i,j,k,l,f; ^ ../../../src/tools/gmx_current.c: In function 'gmx_current': ../../../src/tools/gmx_current.c:720:15: warning: unused variable 'tfile' [-Wunused-variable] FILE *tfile=NULL; ^~~~~ ../../../src/tools/gmx_current.c:719:15: warning: unused variable 'outi' [-Wunused-variable] FILE *outi=NULL; ^~~~ ../../../src/tools/gmx_current.c:716:14: warning: unused variable 'lambda' [-Wunused-variable] real lambda; ^~~~~~ ../../../src/tools/gmx_current.c:715:13: warning: unused variable 't' [-Wunused-variable] real t; ^ ../../../src/tools/gmx_current.c:714:14: warning: unused variable 'step' [-Wunused-variable] int step; ^~~~ ../../../src/tools/gmx_current.c:713:21: warning: unused variable 'l' [-Wunused-variable] int i,j,k=0,l; ^ ../../../src/tools/gmx_current.c:713:17: warning: unused variable 'k' [-Wunused-variable] int i,j,k=0,l; ^ ../../../src/tools/gmx_current.c:713:15: warning: unused variable 'j' [-Wunused-variable] int i,j,k=0,l; ^ ../../../src/tools/gmx_current.c:711:12: warning: unused variable 'natoms' [-Wunused-variable] int natoms; ^~~~~~ ../../../src/tools/gmx_current.c:707:10: warning: variable 'bNEU' set but not used [-Wunused-but-set-variable] bool bNEU; ^~~~ ../../../src/tools/gmx_current.c:706:13: warning: variable 'bTop' set but not used [-Wunused-but-set-variable] bool bTop; ^~~~ In file included from ../../../src/tools/gmx_current.c:44: At top level: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_current.c:43: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_current.c:43: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_current.c:40: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_dyndom.lo ../../../src/tools/gmx_dyndom.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_dyndom.c -fPIC -DPIC -o .libs/gmx_dyndom.o ../../../src/tools/gmx_dyndom.c: In function 'rot_conf': ../../../src/tools/gmx_dyndom.c:60:14: warning: unused variable 'j' [-Wunused-variable] int i,j,ai; ^ ../../../src/tools/gmx_dyndom.c:58:43: warning: unused variable 'temp43' [-Wunused-variable] mat4 temp1,temp2,temp3,temp4,temp21,temp43; ^~~~~~ ../../../src/tools/gmx_dyndom.c:58:36: warning: unused variable 'temp21' [-Wunused-variable] mat4 temp1,temp2,temp3,temp4,temp21,temp43; ^~~~~~ ../../../src/tools/gmx_dyndom.c:58:30: warning: unused variable 'temp4' [-Wunused-variable] mat4 temp1,temp2,temp3,temp4,temp21,temp43; ^~~~~ ../../../src/tools/gmx_dyndom.c:57:49: warning: unused variable 'Tx' [-Wunused-variable] mat4 Rx,Ry,Rz,Rinvy,Rinvz,Mtot,Tcm,Tinvcm,Tx; ^~ ../../../src/tools/gmx_dyndom.c:57:42: warning: unused variable 'Tinvcm' [-Wunused-variable] mat4 Rx,Ry,Rz,Rinvy,Rinvz,Mtot,Tcm,Tinvcm,Tx; ^~~~~~ ../../../src/tools/gmx_dyndom.c:57:38: warning: unused variable 'Tcm' [-Wunused-variable] mat4 Rx,Ry,Rz,Rinvy,Rinvz,Mtot,Tcm,Tinvcm,Tx; ^~~ ../../../src/tools/gmx_dyndom.c:55:18: warning: unused variable 'center' [-Wunused-variable] rvec arrow,center,xcm; ^~~~~~ In file included from ../../../src/tools/gmx_dyndom.c:47: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_dyndom.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/tools/gmx_dyndom.c:43: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_dyndom.c:41: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_chi.lo ../../../src/tools/gmx_chi.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_chi.c -fPIC -DPIC -o .libs/gmx_chi.o ../../../src/tools/gmx_chi.c: In function 'histogramming': ../../../src/tools/gmx_chi.c:418:23: warning: unused variable 'his_aa1' [-Wunused-variable] int ***his_aa,**his_aa1,*histmp; ^~~~~~~ ../../../src/tools/gmx_chi.c: In function 'print_transitions': ../../../src/tools/gmx_chi.c:834:8: warning: variable 'nh' set but not used [-Wunused-but-set-variable] int nh[edMax]; ^~ ../../../src/tools/gmx_chi.c: In function 'gmx_chi': ../../../src/tools/gmx_chi.c:1098:16: warning: unused variable 'j' [-Wunused-variable] int i,j,**chi_lookup,*xity; ^ In file included from ../../../src/tools/gmx_chi.c:59: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../src/tools/gmx_chi.c:49: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/tools/gmx_chi.c:47: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_chi.c:44: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_chi.c:43: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../src/tools/gmx_chi.c: In function 'histogramming.isra.1': ../../../src/tools/gmx_chi.c:657:30: warning: '.xvg' directive writing 4 bytes into a region of size between 0 and 255 [-Wformat-overflow=] sprintf(sshisfile,"%s-%s.xvg",hisfile,sss[k]); ^~~~ In file included from /usr/include/stdio.h:862, from ../../../src/tools/gmx_chi.c:39: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 6 or more bytes (assuming 261) into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_anaeig.lo ../../../src/tools/gmx_anaeig.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_anaeig.c -fPIC -DPIC -o .libs/gmx_anaeig.o ../../../src/tools/gmx_anaeig.c: In function 'calc_entropy_schlitter': ../../../src/tools/gmx_anaeig.c:98:10: warning: unused variable 'buf' [-Wunused-variable] char buf[256]; ^~~ ../../../src/tools/gmx_anaeig.c:97:16: warning: unused variable 'm' [-Wunused-variable] int i,j,k,m; ^ ../../../src/tools/gmx_anaeig.c:97:14: warning: unused variable 'k' [-Wunused-variable] int i,j,k,m; ^ ../../../src/tools/gmx_anaeig.c:97:12: warning: unused variable 'j' [-Wunused-variable] int i,j,k,m; ^ ../../../src/tools/gmx_anaeig.c:96:11: warning: unused variable 'indx' [-Wunused-variable] int *indx; ^~~~ ../../../src/tools/gmx_anaeig.c: In function 'compare': ../../../src/tools/gmx_anaeig.c:224:12: warning: unused variable 'nrow' [-Wunused-variable] int n,nrow; ^~~~ ../../../src/tools/gmx_anaeig.c: In function 'rmsf': ../../../src/tools/gmx_anaeig.c:692:9: warning: unused variable 'nrow' [-Wunused-variable] int nrow,g,v,i; ^~~~ ../../../src/tools/gmx_anaeig.c: In function 'gmx_anaeig': ../../../src/tools/gmx_anaeig.c:1015:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (i!=natoms) ^~ ../../../src/tools/gmx_anaeig.c:1017:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' printf("\n"); ^~~~~~ ../../../src/tools/gmx_anaeig.c:835:21: warning: unused variable 'step' [-Wunused-variable] int natoms,step; ^~~~ ../../../src/tools/gmx_anaeig.c:834:42: warning: unused variable 'lambda' [-Wunused-variable] real xid,totmass,*sqrtm,*w_rls,t,lambda; ^~~~~~ ../../../src/tools/gmx_anaeig.c:834:14: warning: unused variable 'xid' [-Wunused-variable] real xid,totmass,*sqrtm,*w_rls,t,lambda; ^~~ ../../../src/tools/gmx_anaeig.c:832:18: warning: unused variable 'xread' [-Wunused-variable] rvec *x,*xread,*xav1,*xav2,**eigvec1=NULL,**eigvec2=NULL; ^~~~~ ../../../src/tools/gmx_anaeig.c:832:15: warning: unused variable 'x' [-Wunused-variable] rvec *x,*xread,*xav1,*xav2,**eigvec1=NULL,**eigvec2=NULL; ^ ../../../src/tools/gmx_anaeig.c:825:21: warning: unused variable 'trjout' [-Wunused-variable] int status,trjout; ^~~~~~ ../../../src/tools/gmx_anaeig.c:825:14: warning: unused variable 'status' [-Wunused-variable] int status,trjout; ^~~~~~ ../../../src/tools/gmx_anaeig.c:824:15: warning: unused variable 'out' [-Wunused-variable] FILE *out; ^~~ In file included from ../../../src/tools/gmx_anaeig.c:53: At top level: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ In file included from ../../../src/tools/gmx_anaeig.c:49: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_anaeig.c:47: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_anaeig.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_anaeig.c:41: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_kinetics.lo ../../../src/tools/gmx_kinetics.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_kinetics.c -fPIC -DPIC -o .libs/gmx_kinetics.o ../../../src/tools/gmx_kinetics.c: In function 'epnm': ../../../src/tools/gmx_kinetics.c:96:16: warning: unused variable 'ii' [-Wunused-variable] int nn,ni,ii; ^~ ../../../src/tools/gmx_kinetics.c:96:13: warning: unused variable 'ni' [-Wunused-variable] int nn,ni,ii; ^~ ../../../src/tools/gmx_kinetics.c:96:10: warning: unused variable 'nn' [-Wunused-variable] int nn,ni,ii; ^~ ../../../src/tools/gmx_kinetics.c:95:31: warning: unused variable 'to' [-Wunused-variable] static char buf[32],from[8],to[8]; ^~ ../../../src/tools/gmx_kinetics.c:95:23: warning: unused variable 'from' [-Wunused-variable] static char buf[32],from[8],to[8]; ^~~~ ../../../src/tools/gmx_kinetics.c:95:15: warning: unused variable 'buf' [-Wunused-variable] static char buf[32],from[8],to[8]; ^~~ ../../../src/tools/gmx_kinetics.c: In function 'dump_remd_parameters': ../../../src/tools/gmx_kinetics.c:559:8: warning: unused variable 'rhs' [-Wunused-variable] real rhs,tauf,taub,fff,DG; ^~~ At top level: ../../../src/tools/gmx_kinetics.c:95:15: warning: 'buf' defined but not used [-Wunused-variable] static char buf[32],from[8],to[8]; ^~~ ../../../src/tools/gmx_kinetics.c:95:23: warning: 'from' defined but not used [-Wunused-variable] static char buf[32],from[8],to[8]; ^~~~ ../../../src/tools/gmx_kinetics.c:95:31: warning: 'to' defined but not used [-Wunused-variable] static char buf[32],from[8],to[8]; ^~ ../../../src/tools/gmx_kinetics.c:85:14: warning: 'itoa' defined but not used [-Wunused-function] static char *itoa(int i) ^~~~ In file included from ../../../src/tools/gmx_kinetics.c:49: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_kinetics.c:48: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_kinetics.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_kinetics.c:42: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_lie.lo ../../../src/tools/gmx_lie.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_lie.c -fPIC -DPIC -o .libs/gmx_lie.o In file included from ../../../src/tools/gmx_lie.c:52: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_lie.c:51: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_lie.c:51: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_lie.c:45: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_filter.lo ../../../src/tools/gmx_filter.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_filter.c -fPIC -DPIC -o .libs/gmx_filter.o In file included from ../../../src/tools/gmx_filter.c:53: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_filter.c:47: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_filter.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_filter.c:42: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_h2order.lo ../../../src/tools/gmx_h2order.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_h2order.c -fPIC -DPIC -o .libs/gmx_h2order.o In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_h2order.c:54: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_h2order.c:52: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_h2order.c:49: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_h2order.c:49: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_cluster.lo ../../../src/tools/gmx_cluster.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_cluster.c -fPIC -DPIC -o .libs/gmx_cluster.o ../../../src/tools/gmx_cluster.c: In function 'mark_clusters': ../../../src/tools/gmx_cluster.c:638:11: warning: unused variable 'v' [-Wunused-variable] int i,j,v; ^ ../../../src/tools/gmx_cluster.c: In function 'gmx_cluster': ../../../src/tools/gmx_cluster.c:1341:7: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(i=0; (ipdbinfo[ii0].pdbresnr,"%d",r0+1); ^~ ../../../src/tools/gmx_sas.c:152:44: note: directive argument in the range [-2147483647, 2147483647] sprintf(atoms->pdbinfo[ii0].pdbresnr,"%d",r0+1); ^~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../src/tools/gmx_sas.c:42: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 2 and 12 bytes into a destination of size 6 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_rmsdist.lo ../../../src/tools/gmx_rmsdist.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_rmsdist.c -fPIC -DPIC -o .libs/gmx_rmsdist.o ../../../src/tools/gmx_rmsdist.c: In function 'analyze_noe_equivalent': ../../../src/tools/gmx_rmsdist.c:249:11: warning: unused variable 'fp' [-Wunused-variable] FILE *fp; ^~ ../../../src/tools/gmx_rmsdist.c: In function 'gmx_rmsdist': ../../../src/tools/gmx_rmsdist.c:534:36: warning: unused variable 'gj' [-Wunused-variable] int natom,i,j,teller,gi,gj; ^~ ../../../src/tools/gmx_rmsdist.c:534:33: warning: unused variable 'gi' [-Wunused-variable] int natom,i,j,teller,gi,gj; ^~ ../../../src/tools/gmx_rmsdist.c:534:24: warning: unused variable 'j' [-Wunused-variable] int natom,i,j,teller,gi,gj; ^ In file included from ../../../src/tools/gmx_rmsdist.c:52: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_rmsdist.c:52: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_rmsdist.c:48: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_rmsdist.c:47: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_spol.lo ../../../src/tools/gmx_spol.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_spol.c -fPIC -DPIC -o .libs/gmx_spol.o ../../../src/tools/gmx_spol.c: In function 'gmx_spol': ../../../src/tools/gmx_spol.c:165:28: warning: unused variable 'bPBC' [-Wunused-variable] static bool bCom = FALSE,bPBC = FALSE; ^~~~ ../../../src/tools/gmx_spol.c:131:13: warning: unused variable 'xtop' [-Wunused-variable] rvec *xtop,*x,xref,try,dx,dip,dir; ^~~~ ../../../src/tools/gmx_spol.c:127:12: warning: unused variable 'title' [-Wunused-variable] char title[STRLEN]; ^~~~~ At top level: ../../../src/tools/gmx_spol.c:165:28: warning: 'bPBC' defined but not used [-Wunused-variable] static bool bCom = FALSE,bPBC = FALSE; ^~~~ In file included from ../../../src/tools/gmx_spol.c:45: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_spol.c:45: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/tools/gmx_spol.c:43: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_spol.c:41: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_rms.lo ../../../src/tools/gmx_rms.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_rms.c -fPIC -DPIC -o .libs/gmx_rms.o In file included from ../../../src/tools/gmx_rms.c:49: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_rms.c:49: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_rms.c:47: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_rms.c:46: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_sorient.lo ../../../src/tools/gmx_sorient.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_sorient.c -fPIC -DPIC -o .libs/gmx_sorient.o ../../../src/tools/gmx_sorient.c: In function 'gmx_sorient': ../../../src/tools/gmx_sorient.c:114:72: warning: unused variable 'mtot' [-Wunused-variable] real inp,outp,two_pi,nav,normfac,rmin2,rmax2,rcut,rcut2,r2,r,mass,mtot; ^~~~ ../../../src/tools/gmx_sorient.c:114:67: warning: unused variable 'mass' [-Wunused-variable] real inp,outp,two_pi,nav,normfac,rmin2,rmax2,rcut,rcut2,r2,r,mass,mtot; ^~~~ ../../../src/tools/gmx_sorient.c:114:20: warning: variable 'two_pi' set but not used [-Wunused-but-set-variable] real inp,outp,two_pi,nav,normfac,rmin2,rmax2,rcut,rcut2,r2,r,mass,mtot; ^~~~~~ ../../../src/tools/gmx_sorient.c:108:13: warning: unused variable 'j' [-Wunused-variable] int i,j,p,sa0,sa1,sa2,n,ntot,nf,m,*hist1,*hist2,*histn,nbin1,nbin2,nrbin; ^ In file included from ../../../src/tools/gmx_sorient.c:45: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_sorient.c:45: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/tools/gmx_sorient.c:43: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_sorient.c:41: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_velacc.lo ../../../src/tools/gmx_velacc.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_velacc.c -fPIC -DPIC -o .libs/gmx_velacc.o In file included from ../../../src/tools/gmx_velacc.c:57: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../src/tools/gmx_velacc.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/tools/gmx_velacc.c:46: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_velacc.c:43: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_sdf.lo ../../../src/tools/gmx_sdf.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_sdf.c -fPIC -DPIC -o .libs/gmx_sdf.o ../../../src/tools/gmx_sdf.c: In function 'do_sdf': ../../../src/tools/gmx_sdf.c:101:25: warning: unused variable 'bRefDone' [-Wunused-variable] bool bTop=FALSE,bRefDone=FALSE,bInGroup=FALSE; ^~~~~~~~ ../../../src/tools/gmx_sdf.c:97:17: warning: unused variable 'jx' [-Wunused-variable] atom_id ix,jx; ^~ ../../../src/tools/gmx_sdf.c:97:14: warning: unused variable 'ix' [-Wunused-variable] atom_id ix,jx; ^~ ../../../src/tools/gmx_sdf.c:92:17: warning: unused variable 'xcog' [-Wunused-variable] rvec *x,xcog,dx,*x_i1,xi,*x_refmol; ^~~~ ../../../src/tools/gmx_sdf.c:89:23: warning: variable 'hbox' set but not used [-Wunused-but-set-variable] real t,boxmin,hbox,normfac; ^~~~ ../../../src/tools/gmx_sdf.c:88:15: warning: unused variable 'index_ref' [-Wunused-variable] atom_id *index_ref=NULL; ^~~~~~~~~ ../../../src/tools/gmx_sdf.c:87:15: warning: unused variable 'index_cg' [-Wunused-variable] atom_id *index_cg=NULL; ^~~~~~~~ ../../../src/tools/gmx_sdf.c:85:24: warning: unused variable 'refc' [-Wunused-variable] int nrefmol=0,refc=0; ^~~~ ../../../src/tools/gmx_sdf.c:83:14: warning: unused variable 'isize_ref' [-Wunused-variable] int isize_ref=3; ^~~~~~~~~ ../../../src/tools/gmx_sdf.c:82:14: warning: unused variable 'isize_cg' [-Wunused-variable] int isize_cg=0; ^~~~~~~~ ../../../src/tools/gmx_sdf.c:75:41: warning: unused variable 'dest' [-Wunused-variable] int ng,natoms,i,j,k,l,X,Y,Z,lc,dest; ^~~~ ../../../src/tools/gmx_sdf.c:75:38: warning: unused variable 'lc' [-Wunused-variable] int ng,natoms,i,j,k,l,X,Y,Z,lc,dest; ^~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_sdf.c:33: At top level: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_sdf.c:31: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_sdf.c:28: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_sdf.c:28: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ ../../../src/tools/gmx_sdf.c:20:14: warning: 'SRCID_template_c' defined but not used [-Wunused-variable] static char *SRCID_template_c = "$Id$"; ^~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_tcaf.lo ../../../src/tools/gmx_tcaf.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_tcaf.c -fPIC -DPIC -o .libs/gmx_tcaf.o ../../../src/tools/gmx_tcaf.c: In function 'gmx_tcaf': ../../../src/tools/gmx_tcaf.c:274:16: warning: unused variable 'c1' [-Wunused-variable] real **c1,**tc; ^~ ../../../src/tools/gmx_tcaf.c:265:14: warning: unused variable 'bTPS' [-Wunused-variable] bool bTPS,bTop; /* ,bCubic; */ ^~~~ In file included from ../../../src/tools/gmx_tcaf.c:57: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../src/tools/gmx_tcaf.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/tools/gmx_tcaf.c:46: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_tcaf.c:43: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_mdmat.lo ../../../src/tools/gmx_mdmat.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_mdmat.c -fPIC -DPIC -o .libs/gmx_mdmat.o ../../../src/tools/gmx_mdmat.c: In function 'gmx_mdmat': ../../../src/tools/gmx_mdmat.c:193:14: warning: unused variable 'nr0' [-Wunused-variable] int nr0; ^~~ ../../../src/tools/gmx_mdmat.c:192:45: warning: unused variable 'it' [-Wunused-variable] int i,j,status,nres,natoms,nframes,it,trxnat; ^~ ../../../src/tools/gmx_mdmat.c:165:15: warning: unused variable 'bAtom' [-Wunused-variable] static bool bAtom=FALSE; ^~~~~ At top level: ../../../src/tools/gmx_mdmat.c:165:15: warning: 'bAtom' defined but not used [-Wunused-variable] In file included from ../../../src/tools/gmx_mdmat.c:49: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_mdmat.c:48: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_mdmat.c:44: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_mdmat.c:44: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o correl.lo ../../../src/tools/correl.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/correl.c -fPIC -DPIC -o .libs/correl.o ../../../src/tools/correl.c: In function 'complex_mult': ../../../src/tools/correl.c:189:10: warning: unused variable 'no2' [-Wunused-variable] int i,no2,n_2,k; ^~~ In file included from ../../../include/gmx_fft.h:41, from ../../../src/tools/correl.c:43: At top level: ../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function] static t_complex cdiv(t_complex teller,t_complex noemer) ^~~~ ../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function] static t_complex csub(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function] static t_complex cadd(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function] static t_complex rcexp(real r) ^~~~~ ../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable] static t_complex cnul = { 0.0, 0.0 }; ^~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_clustsize.lo ../../../src/tools/gmx_clustsize.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_clustsize.c -fPIC -DPIC -o .libs/gmx_clustsize.o ../../../src/tools/gmx_clustsize.c: In function 'clust_size': ../../../src/tools/gmx_clustsize.c:94:50: warning: unused variable 'n_y' [-Wunused-variable] int i,j,k,ai,aj,ak,ci,cj,nframe,nclust,n_x,n_y,max_size=0; ^~~ ../../../src/tools/gmx_clustsize.c:94:23: warning: unused variable 'ak' [-Wunused-variable] int i,j,k,ai,aj,ak,ci,cj,nframe,nclust,n_x,n_y,max_size=0; ^~ ../../../src/tools/gmx_clustsize.c:89:40: warning: unused variable 'nsame' [-Wunused-variable] int version,generation,sss,ii,jj,nsame; ^~~~~ ../../../src/tools/gmx_clustsize.c: In function 'gmx_clustsize': ../../../src/tools/gmx_clustsize.c:396:18: warning: unused variable 'bRDF' [-Wunused-variable] bool bSQ,bRDF; ^~~~ ../../../src/tools/gmx_clustsize.c:396:14: warning: unused variable 'bSQ' [-Wunused-variable] bool bSQ,bRDF; ^~~ In file included from ../../../include/pme.h:46, from ../../../src/tools/gmx_clustsize.c:62: At top level: ../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function] static t_complex cdiv(t_complex teller,t_complex noemer) ^~~~ ../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function] static t_complex csub(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function] static t_complex cadd(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function] static t_complex rcexp(real r) ^~~~~ ../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable] static t_complex cnul = { 0.0, 0.0 }; ^~~~ In file included from ../../../src/tools/gmx_clustsize.c:52: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_clustsize.c:50: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_clustsize.c:47: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_clustsize.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_nmtraj.lo ../../../src/tools/gmx_nmtraj.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_nmtraj.c -fPIC -DPIC -o .libs/gmx_nmtraj.o ../../../src/tools/gmx_nmtraj.c: In function 'gmx_nmtraj': ../../../src/tools/gmx_nmtraj.c:129:14: warning: variable 'dum' set but not used [-Wunused-but-set-variable] real dum; ^~~ ../../../src/tools/gmx_nmtraj.c:124:14: warning: unused variable 'found' [-Wunused-variable] bool found; ^~~~~ ../../../src/tools/gmx_nmtraj.c:123:25: warning: unused variable 'sum' [-Wunused-variable] real omega,Ekin,sum,m,vel; ^~~ ../../../src/tools/gmx_nmtraj.c:121:15: warning: unused variable 'out_eigval' [-Wunused-variable] real *out_eigval; ^~~~~~~~~~ ../../../src/tools/gmx_nmtraj.c:115:14: warning: unused variable 'neigval' [-Wunused-variable] int neigval; ^~~~~~~ ../../../src/tools/gmx_nmtraj.c:113:14: warning: unused variable 'grpname' [-Wunused-variable] char * grpname; ^~~~~~~ ../../../src/tools/gmx_nmtraj.c:111:14: warning: unused variable 'indexfile' [-Wunused-variable] char * indexfile; ^~~~~~~~~ ../../../src/tools/gmx_nmtraj.c:109:30: warning: unused variable 'v' [-Wunused-variable] int i,j,k,kmode,d,s,v; ^ ../../../src/tools/gmx_nmtraj.c:109:28: warning: unused variable 's' [-Wunused-variable] int i,j,k,kmode,d,s,v; ^ ../../../src/tools/gmx_nmtraj.c:105:15: warning: unused variable 'eigvalnr' [-Wunused-variable] int *eigvalnr; ^~~~~~~~ In file included from ../../../src/tools/gmx_nmtraj.c:54: At top level: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/tools/gmx_nmtraj.c:50: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_nmtraj.c:49: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_nmtraj.c:49: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_nmtraj.c:43: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_helixorient.lo ../../../src/tools/gmx_helixorient.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_helixorient.c -fPIC -DPIC -o .libs/gmx_helixorient.o ../../../src/tools/gmx_helixorient.c: In function 'gmx_helixorient': ../../../src/tools/gmx_helixorient.c:125:14: warning: unused variable 'rotangle' [-Wunused-variable] real tmp,rotangle; ^~~~~~~~ ../../../src/tools/gmx_helixorient.c:107:10: warning: unused variable 'axes' [-Wunused-variable] rvec axes[3]; ^~~~ ../../../src/tools/gmx_helixorient.c:106:10: warning: unused variable 'axes_t0' [-Wunused-variable] rvec axes_t0[3]; ^~~~~~~ ../../../src/tools/gmx_helixorient.c:93:27: warning: unused variable 'vproj' [-Wunused-variable] rvec v1,v2,p1,p2,vtmp,vproj; ^~~~~ ../../../src/tools/gmx_helixorient.c:93:22: warning: unused variable 'vtmp' [-Wunused-variable] rvec v1,v2,p1,p2,vtmp,vproj; ^~~~ ../../../src/tools/gmx_helixorient.c:93:19: warning: unused variable 'p2' [-Wunused-variable] rvec v1,v2,p1,p2,vtmp,vproj; ^~ ../../../src/tools/gmx_helixorient.c:93:16: warning: unused variable 'p1' [-Wunused-variable] rvec v1,v2,p1,p2,vtmp,vproj; ^~ ../../../src/tools/gmx_helixorient.c:92:10: warning: unused variable 'averageaxis' [-Wunused-variable] rvec averageaxis; ^~~~~~~~~~~ ../../../src/tools/gmx_helixorient.c:86:9: warning: unused variable 'd' [-Wunused-variable] int d,i,j,teller=0; ^ ../../../src/tools/gmx_helixorient.c:80:18: warning: unused variable 'dx' [-Wunused-variable] rvec *x=NULL,dx; ^~ In file included from ../../../src/tools/gmx_helixorient.c:48: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_helixorient.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_helixorient.c:46: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_helixorient.c:45: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_traj.lo ../../../src/tools/gmx_traj.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_traj.c -fPIC -DPIC -o .libs/gmx_traj.o ../../../src/tools/gmx_traj.c: In function 'write_pdb_bfac': ../../../src/tools/gmx_traj.c:337:11: warning: unused variable 'bOne' [-Wunused-variable] bool bOne; ^~~~ ../../../src/tools/gmx_traj.c: In function 'gmx_traj': ../../../src/tools/gmx_traj.c:525:18: warning: unused variable 'n' [-Wunused-variable] int i,j,n; ^ In file included from ../../../src/tools/gmx_traj.c:49: At top level: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_traj.c:47: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_traj.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_traj.c:42: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_trjorder.lo ../../../src/tools/gmx_trjorder.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_trjorder.c -fPIC -DPIC -o .libs/gmx_trjorder.o In file included from ../../../src/tools/gmx_trjorder.c:49: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_trjorder.c:47: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_trjorder.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_trjorder.c:42: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_trjcat.lo ../../../src/tools/gmx_trjcat.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_trjcat.c -fPIC -DPIC -o .libs/gmx_trjcat.o ../../../src/tools/gmx_trjcat.c: In function 'scan_trj_files': ../../../src/tools/gmx_trjcat.c:78:8: warning: unused variable 't' [-Wunused-variable] real t; ^ ../../../src/tools/gmx_trjcat.c: In function 'gmx_trjcat': ../../../src/tools/gmx_trjcat.c:392:58: warning: unused variable 'last_ok_step' [-Wunused-variable] int earliersteps,nfile_in,nfile_out,*cont_type,last_ok_step; ^~~~~~~~~~~~ ../../../src/tools/gmx_trjcat.c:388:34: warning: unused variable 'in_file' [-Wunused-variable] char **fnms,**fnms_out,*in_file,*out_file; ^~~~~~~ ../../../src/tools/gmx_trjcat.c:385:19: warning: unused variable 'v' [-Wunused-variable] rvec *x,*v; ^ ../../../src/tools/gmx_trjcat.c:385:16: warning: unused variable 'x' [-Wunused-variable] rvec *x,*v; ^ ../../../src/tools/gmx_trjcat.c:384:53: warning: unused variable 'trjout' [-Wunused-variable] int status,ftpin,i,frame,frame_out,step=0,trjout=0; ^~~~~~ ../../../src/tools/gmx_trjcat.c:384:22: warning: unused variable 'ftpin' [-Wunused-variable] int status,ftpin,i,frame,frame_out,step=0,trjout=0; ^~~~~ In file included from ../../../src/tools/gmx_trjcat.c:56: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_trjcat.c:56: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/tools/gmx_trjcat.c:52: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_trjcat.c:50: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_trjcat.c:46: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_hbond.lo ../../../src/tools/gmx_hbond.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_hbond.c -fPIC -DPIC -o .libs/gmx_hbond.o ../../../src/tools/gmx_hbond.c: In function 'mk_hbmap': ../../../src/tools/gmx_hbond.c:182:10: warning: unused variable 'j' [-Wunused-variable] int i,j; ^ ../../../src/tools/gmx_hbond.c: In function 'add_frames': ../../../src/tools/gmx_hbond.c:194:14: warning: unused variable 'l' [-Wunused-variable] int i,j,k,l; ^ ../../../src/tools/gmx_hbond.c:194:12: warning: unused variable 'k' [-Wunused-variable] int i,j,k,l; ^ ../../../src/tools/gmx_hbond.c:194:10: warning: unused variable 'j' [-Wunused-variable] int i,j,k,l; ^ ../../../src/tools/gmx_hbond.c:194:8: warning: unused variable 'i' [-Wunused-variable] int i,j,k,l; ^ ../../../src/tools/gmx_hbond.c: In function 'search_donors': ../../../src/tools/gmx_hbond.c:543:14: warning: unused variable 'stop' [-Wunused-variable] bool stop; ^~~~ ../../../src/tools/gmx_hbond.c:539:22: warning: unused variable 'n' [-Wunused-variable] int i,j,nra,n; ^ ../../../src/tools/gmx_hbond.c:539:18: warning: unused variable 'nra' [-Wunused-variable] int i,j,nra,n; ^~~ ../../../src/tools/gmx_hbond.c: In function 'is_hbond': ../../../src/tools/gmx_hbond.c:900:19: warning: unused variable 'ihb' [-Wunused-variable] int h,hh,id,ja,ihb; ^~~ ../../../src/tools/gmx_hbond.c: In function 'merge_hb': ../../../src/tools/gmx_hbond.c:1021:44: warning: unused variable 'ogrp' [-Wunused-variable] int i,inrnew,indnew,j,ii,jj,m,id,ia,grp,ogrp,ntmp; ^~~~ ../../../src/tools/gmx_hbond.c:1021:40: warning: unused variable 'grp' [-Wunused-variable] int i,inrnew,indnew,j,ii,jj,m,id,ia,grp,ogrp,ntmp; ^~~ ../../../src/tools/gmx_hbond.c:1021:32: warning: unused variable 'm' [-Wunused-variable] int i,inrnew,indnew,j,ii,jj,m,id,ia,grp,ogrp,ntmp; ^ ../../../src/tools/gmx_hbond.c: In function 'do_nhb_dist': ../../../src/tools/gmx_hbond.c:1077:8: warning: unused variable 'nhb' [-Wunused-variable] h_id nhb; ^~~ ../../../src/tools/gmx_hbond.c: In function 'smooth_tail': ../../../src/tools/gmx_hbond.c:1439:9: warning: unused variable 'fp' [-Wunused-variable] FILE *fp; ^~ ../../../src/tools/gmx_hbond.c: In function 'analyse_corr': ../../../src/tools/gmx_hbond.c:1461:56: warning: unused variable 'dt' [-Wunused-variable] real Q=0,chi22,chi2,dg,dgp,tau_hb,dtau,tau_rlx,e_1,dt,sigma_k,sigma_kp,ddg; ^~ ../../../src/tools/gmx_hbond.c:1461:28: warning: unused variable 'dgp' [-Wunused-variable] real Q=0,chi22,chi2,dg,dgp,tau_hb,dtau,tau_rlx,e_1,dt,sigma_k,sigma_kp,ddg; ^~~ ../../../src/tools/gmx_hbond.c:1461:25: warning: unused variable 'dg' [-Wunused-variable] real Q=0,chi22,chi2,dg,dgp,tau_hb,dtau,tau_rlx,e_1,dt,sigma_k,sigma_kp,ddg; ^~ ../../../src/tools/gmx_hbond.c:1461:14: warning: variable 'chi22' set but not used [-Wunused-but-set-variable] real Q=0,chi22,chi2,dg,dgp,tau_hb,dtau,tau_rlx,e_1,dt,sigma_k,sigma_kp,ddg; ^~~~~ ../../../src/tools/gmx_hbond.c: In function 'do_hbac': ../../../src/tools/gmx_hbond.c:1585:27: warning: variable 'ngh' set but not used [-Wunused-but-set-variable] int nh,nhbonds,nhydro,ngh; ^~~ ../../../src/tools/gmx_hbond.c:1577:18: warning: unused variable 'nd' [-Wunused-variable] int i,j,k,m,n,nd,ihb,idist,n2,nn; ^~ ../../../src/tools/gmx_hbond.c:1577:16: warning: unused variable 'n' [-Wunused-variable] int i,j,k,m,n,nd,ihb,idist,n2,nn; ^ ../../../src/tools/gmx_hbond.c: In function 'gmx_hbond': ../../../src/tools/gmx_hbond.c:2051:30: warning: unused variable 'bin' [-Wunused-variable] int grp,nabin,nrbin,bin,resdist,ihb; ^~~ ../../../src/tools/gmx_hbond.c:2049:43: warning: unused variable 'was' [-Wunused-variable] bool bSelected,bHBmap,bStop,bTwo,new,was,bBox,bTric; ^~~ ../../../src/tools/gmx_hbond.c:2049:39: warning: unused variable 'new' [-Wunused-variable] bool bSelected,bHBmap,bStop,bTwo,new,was,bBox,bTric; ^~~ ../../../src/tools/gmx_hbond.c:2045:34: warning: unused variable 'ja' [-Wunused-variable] int h,i,j,k,l,start,end,id,ja,ogrp,nsel; ^~ ../../../src/tools/gmx_hbond.c:2045:31: warning: unused variable 'id' [-Wunused-variable] int h,i,j,k,l,start,end,id,ja,ogrp,nsel; ^~ ../../../src/tools/gmx_hbond.c:2045:27: warning: unused variable 'end' [-Wunused-variable] int h,i,j,k,l,start,end,id,ja,ogrp,nsel; ^~~ ../../../src/tools/gmx_hbond.c:2045:21: warning: unused variable 'start' [-Wunused-variable] int h,i,j,k,l,start,end,id,ja,ogrp,nsel; ^~~~~ ../../../src/tools/gmx_hbond.c:2045:19: warning: unused variable 'l' [-Wunused-variable] int h,i,j,k,l,start,end,id,ja,ogrp,nsel; ^ At top level: ../../../src/tools/gmx_hbond.c:372:13: warning: 'in_list' defined but not used [-Wunused-function] static bool in_list(atom_id selection,int isize,atom_id *index) ^~~~~~~ In file included from ../../../include/gmx_fft.h:41, from ../../../src/tools/correl.h:40, from ../../../src/tools/gmx_hbond.c:59: ../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function] static t_complex cdiv(t_complex teller,t_complex noemer) ^~~~ ../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function] static t_complex csub(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function] static t_complex cadd(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function] static t_complex rcexp(real r) ^~~~~ ../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable] static t_complex cnul = { 0.0, 0.0 }; ^~~~ In file included from ../../../src/tools/gmx_hbond.c:53: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_hbond.c:53: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/tools/gmx_hbond.c:43: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_hbond.c:42: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o editconf.o ../../../src/tools/editconf.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_genion.lo ../../../src/tools/gmx_genion.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_genion.c -fPIC -DPIC -o .libs/gmx_genion.o ../../../src/tools/gmx_genion.c: In function 'insert_ion': ../../../src/tools/gmx_genion.c:72:8: warning: unused variable 'xei' [-Wunused-variable] rvec xei,dx; ^~~ ../../../src/tools/gmx_genion.c:70:29: warning: unused variable 'm' [-Wunused-variable] int i,ii,ei,owater,wlast,m,nw; ^ ../../../src/tools/gmx_genion.c:70:23: warning: unused variable 'wlast' [-Wunused-variable] int i,ii,ei,owater,wlast,m,nw; ^~~~~ ../../../src/tools/gmx_genion.c:70:16: warning: unused variable 'owater' [-Wunused-variable] int i,ii,ei,owater,wlast,m,nw; ^~~~~~ In file included from ../../../src/tools/gmx_genion.c:54: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../src/tools/gmx_genion.c:51: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/tools/gmx_genion.c:48: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_genion.c:46: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_genion.c:41: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_genpr.lo ../../../src/tools/gmx_genpr.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_genpr.c -fPIC -DPIC -o .libs/gmx_genpr.o In file included from ../../../src/tools/gmx_genpr.c:50: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_genpr.c:50: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/tools/gmx_genpr.c:44: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_genpr.c:42: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: *** No rule to make target '.libs/addconf.o', needed by 'genbox'. Stop. make[3]: *** Waiting for unfinished jobs.... make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o eneconv.o ../../../src/tools/eneconv.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o genbox.o ../../../src/tools/genbox.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_genbox.lo ../../../src/tools/gmx_genbox.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_genbox.c -fPIC -DPIC -o .libs/gmx_genbox.o ../../../src/tools/gmx_genbox.c: In function 'gmx_genbox': ../../../src/tools/gmx_genbox.c:665:11: warning: unused variable 'pbc' [-Wunused-variable] t_pbc pbc; ^~~ In file included from ../../../src/tools/gmx_genbox.c:61: At top level: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_genbox.c:57: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_genbox.c:55: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_genbox.c:55: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/tools/gmx_genbox.c:47: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ ../../../src/tools/gmx_genbox.c: In function 'update_top.constprop': ../../../src/tools/gmx_genbox.c:538:19: warning: ' in water ' directive writing 10 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(buf,"%s in water\n",buf2); ^~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../src/tools/gmx_genbox.c:41: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 11 and 4106 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_genconf.lo ../../../src/tools/gmx_genconf.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_genconf.c -fPIC -DPIC -o .libs/gmx_genconf.o ../../../src/tools/gmx_genconf.c:93:13: warning: 'move_x' defined but not used [-Wunused-function] static void move_x(int natoms,rvec x[],matrix box) ^~~~~~ In file included from ../../../src/tools/gmx_genconf.c:48: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_genconf.c:47: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_genconf.c:42: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_genconf.c:40: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_wheel.lo ../../../src/tools/gmx_wheel.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_wheel.c -fPIC -DPIC -o .libs/gmx_wheel.o In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_wheel.c:55: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_wheel.c:52: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_wheel.c:49: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_wheel.c:49: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_sham.lo ../../../src/tools/gmx_sham.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_sham.c -fPIC -DPIC -o .libs/gmx_sham.o ../../../src/tools/gmx_sham.c: In function 'do_sham': ../../../src/tools/gmx_sham.c:286:32: warning: unused variable 'd' [-Wunused-variable] int i,j,k,imin,len,index,d,*nbin,*bindex,bi; ^ ../../../src/tools/gmx_sham.c: In function 'gmx_sham': ../../../src/tools/gmx_sham.c:778:41: warning: unused variable 'db' [-Wunused-variable] double *av,*sig,cum1,cum2,cum3,cum4,db; ^~ ../../../src/tools/gmx_sham.c:778:36: warning: unused variable 'cum4' [-Wunused-variable] double *av,*sig,cum1,cum2,cum3,cum4,db; ^~~~ ../../../src/tools/gmx_sham.c:778:31: warning: unused variable 'cum3' [-Wunused-variable] double *av,*sig,cum1,cum2,cum3,cum4,db; ^~~~ ../../../src/tools/gmx_sham.c:778:26: warning: unused variable 'cum2' [-Wunused-variable] double *av,*sig,cum1,cum2,cum3,cum4,db; ^~~~ ../../../src/tools/gmx_sham.c:778:21: warning: unused variable 'cum1' [-Wunused-variable] double *av,*sig,cum1,cum2,cum3,cum4,db; ^~~~ ../../../src/tools/gmx_sham.c:778:17: warning: unused variable 'sig' [-Wunused-variable] double *av,*sig,cum1,cum2,cum3,cum4,db; ^~~ ../../../src/tools/gmx_sham.c:778:13: warning: unused variable 'av' [-Wunused-variable] double *av,*sig,cum1,cum2,cum3,cum4,db; ^~ ../../../src/tools/gmx_sham.c:776:66: warning: unused variable 'error' [-Wunused-variable] real **val,**et_val,**dt_val,*t,*e_t,e_dt,d_dt,*d_t,dt,tot,error; ^~~~~ ../../../src/tools/gmx_sham.c:776:62: warning: unused variable 'tot' [-Wunused-variable] real **val,**et_val,**dt_val,*t,*e_t,e_dt,d_dt,*d_t,dt,tot,error; ^~~ ../../../src/tools/gmx_sham.c:775:51: warning: unused variable 'j' [-Wunused-variable] int n,e_n,d_n,nlast,s,nset,e_nset,d_nset,i,j=0,*idim,*ibox; ^ ../../../src/tools/gmx_sham.c:775:28: warning: unused variable 's' [-Wunused-variable] int n,e_n,d_n,nlast,s,nset,e_nset,d_nset,i,j=0,*idim,*ibox; ^ ../../../src/tools/gmx_sham.c:775:22: warning: unused variable 'nlast' [-Wunused-variable] int n,e_n,d_n,nlast,s,nset,e_nset,d_nset,i,j=0,*idim,*ibox; ^~~~~ ../../../src/tools/gmx_sham.c:774:13: warning: unused variable 'out' [-Wunused-variable] FILE *out; ^~~ ../../../src/tools/gmx_sham.c:728:35: warning: unused variable 'resol' [-Wunused-variable] static int nsets_in=1,nb_min=4,resol=10,nlevels=25; ^~~~~ ../../../src/tools/gmx_sham.c:728:26: warning: unused variable 'nb_min' [-Wunused-variable] static int nsets_in=1,nb_min=4,resol=10,nlevels=25; ^~~~~~ ../../../src/tools/gmx_sham.c:723:15: warning: unused variable 'bShamEner' [-Wunused-variable] static bool bShamEner=TRUE,bSham=TRUE; ^~~~~~~~~ ../../../src/tools/gmx_sham.c:722:56: warning: unused variable 'bPower' [-Wunused-variable] static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE; ^~~~~~ ../../../src/tools/gmx_sham.c:722:41: warning: unused variable 'bEeFitAc' [-Wunused-variable] static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE; ^~~~~~~~ ../../../src/tools/gmx_sham.c:722:28: warning: unused variable 'bEENLC' [-Wunused-variable] static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE; ^~~~~~ ../../../src/tools/gmx_sham.c:722:15: warning: unused variable 'bEESEF' [-Wunused-variable] static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE; ^~~~~~ ../../../src/tools/gmx_sham.c:721:66: warning: unused variable 'bXYdy' [-Wunused-variable] static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE; ^~~~~ ../../../src/tools/gmx_sham.c:721:50: warning: unused variable 'bAverCorr' [-Wunused-variable] static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE; ^~~~~~~~~ ../../../src/tools/gmx_sham.c:721:38: warning: unused variable 'bSubAv' [-Wunused-variable] static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE; ^~~~~~ ../../../src/tools/gmx_sham.c:720:36: warning: unused variable 'filtlen' [-Wunused-variable] static real tb=-1,te=-1,frac=0.5,filtlen=0,binwidth=0.1; ^~~~~~~ ../../../src/tools/gmx_sham.c:720:27: warning: unused variable 'frac' [-Wunused-variable] static real tb=-1,te=-1,frac=0.5,filtlen=0,binwidth=0.1; ^~~~ At top level: ../../../src/tools/gmx_sham.c:720:27: warning: 'frac' defined but not used [-Wunused-variable] ../../../src/tools/gmx_sham.c:720:36: warning: 'filtlen' defined but not used [-Wunused-variable] static real tb=-1,te=-1,frac=0.5,filtlen=0,binwidth=0.1; ^~~~~~~ ../../../src/tools/gmx_sham.c:721:38: warning: 'bSubAv' defined but not used [-Wunused-variable] static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE; ^~~~~~ ../../../src/tools/gmx_sham.c:721:50: warning: 'bAverCorr' defined but not used [-Wunused-variable] static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE; ^~~~~~~~~ ../../../src/tools/gmx_sham.c:721:66: warning: 'bXYdy' defined but not used [-Wunused-variable] static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE; ^~~~~ ../../../src/tools/gmx_sham.c:722:15: warning: 'bEESEF' defined but not used [-Wunused-variable] static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE; ^~~~~~ ../../../src/tools/gmx_sham.c:722:28: warning: 'bEENLC' defined but not used [-Wunused-variable] static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE; ^~~~~~ ../../../src/tools/gmx_sham.c:722:41: warning: 'bEeFitAc' defined but not used [-Wunused-variable] static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE; ^~~~~~~~ ../../../src/tools/gmx_sham.c:722:56: warning: 'bPower' defined but not used [-Wunused-variable] static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE; ^~~~~~ ../../../src/tools/gmx_sham.c:723:15: warning: 'bShamEner' defined but not used [-Wunused-variable] static bool bShamEner=TRUE,bSham=TRUE; ^~~~~~~~~ ../../../src/tools/gmx_sham.c:728:26: warning: 'nb_min' defined but not used [-Wunused-variable] static int nsets_in=1,nb_min=4,resol=10,nlevels=25; ^~~~~~ ../../../src/tools/gmx_sham.c:728:35: warning: 'resol' defined but not used [-Wunused-variable] static int nsets_in=1,nb_min=4,resol=10,nlevels=25; ^~~~~ In file included from ../../../src/tools/gmx_sham.c:56: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/tools/gmx_sham.c:48: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_sham.c:47: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_sham.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_sham.c:41: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_wham.lo ../../../src/tools/gmx_wham.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_wham.c -fPIC -DPIC -o .libs/gmx_wham.o In file included from ../../../src/tools/gmx_wham.c:48: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_wham.c:47: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_wham.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_wham.c:44: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ ../../../src/tools/gmx_wham.c: In function 'open_pdo_pipe': ../../../src/tools/gmx_wham.c:1201:27: warning: ' -c < ' directive writing 6 bytes into a region of size between 1 and 1024 [-Wformat-overflow=] sprintf(Buffer,"%s -c < %s",gunzip,fn); ^~~~~~ In file included from /usr/include/stdio.h:862, from ../../../src/tools/gmx_wham.c:37: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 7 or more bytes (assuming 1030) into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_eneconv.lo ../../../src/tools/gmx_eneconv.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_eneconv.c -fPIC -DPIC -o .libs/gmx_eneconv.o ../../../src/tools/gmx_eneconv.c: In function 'gmx_eneconv': ../../../src/tools/gmx_eneconv.c:427:14: warning: unused variable 'ok' [-Wunused-variable] bool ok; ^~ ../../../src/tools/gmx_eneconv.c:426:35: warning: unused variable 'chptr' [-Wunused-variable] char inputstring[STRLEN],*chptr; ^~~~~ ../../../src/tools/gmx_eneconv.c:426:14: warning: unused variable 'inputstring' [-Wunused-variable] char inputstring[STRLEN],*chptr; ^~~~~~~~~~~ ../../../src/tools/gmx_eneconv.c:425:42: warning: unused variable 't1' [-Wunused-variable] real *readtime,*settime,timestep,t1,tadjust; ^~ ../../../src/tools/gmx_eneconv.c:421:42: warning: unused variable 'j' [-Wunused-variable] int nre,nremax,this_nre,nfile,i,j,kkk,nset,*set=NULL; ^ At top level: ../../../src/tools/gmx_eneconv.c:101:13: warning: 'same_time' defined but not used [-Wunused-function] static bool same_time(real t1,real t2) ^~~~~~~~~ In file included from ../../../src/tools/gmx_eneconv.c:48: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_eneconv.c:45: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o edittop.lo ../../../src/tools/edittop.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/edittop.c -fPIC -DPIC -o .libs/edittop.o ../../../src/tools/edittop.c: In function 'delete_from_block': ../../../src/tools/edittop.c:104:17: warning: unused variable 'k' [-Wunused-variable] int i,i1,j1,j,k; ^ ../../../src/tools/edittop.c:104:12: warning: unused variable 'j1' [-Wunused-variable] int i,i1,j1,j,k; ^~ ../../../src/tools/edittop.c: In function 'delete_atom': ../../../src/tools/edittop.c:161:7: warning: unused variable 'k' [-Wunused-variable] int k; ^ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_editconf.lo ../../../src/tools/gmx_editconf.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_editconf.c -fPIC -DPIC -o .libs/gmx_editconf.o ../../../src/tools/gmx_editconf.c: In function 'calc_geom': ../../../src/tools/gmx_editconf.c:103:12: warning: unused variable 'grpnames' [-Wunused-variable] char *grpnames; ^~~~~~~~ ../../../src/tools/gmx_editconf.c: In function 'set_pdb_conf_bfac': ../../../src/tools/gmx_editconf.c:195:9: warning: unused variable 'out' [-Wunused-variable] FILE *out; ^~~ ../../../src/tools/gmx_editconf.c: In function 'gmx_editconf': ../../../src/tools/gmx_editconf.c:518:35: warning: unused variable 'zcent' [-Wunused-variable] real xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw; ^~~~~ ../../../src/tools/gmx_editconf.c:518:29: warning: unused variable 'ycent' [-Wunused-variable] real xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw; ^~~~~ ../../../src/tools/gmx_editconf.c:518:23: warning: unused variable 'xcent' [-Wunused-variable] real xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw; ^~~~~ ../../../src/tools/gmx_editconf.c:518:20: warning: unused variable 'zs' [-Wunused-variable] real xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw; ^~ ../../../src/tools/gmx_editconf.c:518:17: warning: unused variable 'ys' [-Wunused-variable] real xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw; ^~ ../../../src/tools/gmx_editconf.c:518:14: warning: unused variable 'xs' [-Wunused-variable] real xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw; ^~ ../../../src/tools/gmx_editconf.c:516:38: warning: unused variable 'bCubic' [-Wunused-variable] bool bIndex,bSetSize,bSetAng,bCubic,bDist,bSetCenter; ^~~~~~ ../../../src/tools/gmx_editconf.c:512:30: warning: unused variable 'tindex' [-Wunused-variable] atom_id *index,*sindex,*tindex; ^~~~~~ ../../../src/tools/gmx_editconf.c:511:26: warning: unused variable 'tsize' [-Wunused-variable] int isize,ssize,tsize; ^~~~~ ../../../src/tools/gmx_editconf.c:456:33: warning: unused variable 'to_diam' [-Wunused-variable] static real dist=0.0,rbox=0.0,to_diam=0.0; ^~~~~~~ ../../../src/tools/gmx_editconf.c:456:24: warning: unused variable 'rbox' [-Wunused-variable] static real dist=0.0,rbox=0.0,to_diam=0.0; ^~~~ At top level: ../../../src/tools/gmx_editconf.c:456:24: warning: 'rbox' defined but not used [-Wunused-variable] ../../../src/tools/gmx_editconf.c:456:33: warning: 'to_diam' defined but not used [-Wunused-variable] static real dist=0.0,rbox=0.0,to_diam=0.0; ^~~~~~~ ../../../src/tools/gmx_editconf.c:79:14: warning: 'pdbtp' defined but not used [-Wunused-variable] static char *pdbtp[epdbNR]={"ATOM ","HETATM"}; ^~~~~ In file included from ../../../src/tools/gmx_editconf.c:53: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_editconf.c:53: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_editconf.c:49: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_editconf.c:48: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_editconf.c:43: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_vanhove.lo ../../../src/tools/gmx_vanhove.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_vanhove.c -fPIC -DPIC -o .libs/gmx_vanhove.o In file included from ../../../src/tools/gmx_vanhove.c:56: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../src/tools/gmx_vanhove.c:51: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_vanhove.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_vanhove.c:47: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o calcpot.lo ../../../src/tools/calcpot.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/calcpot.c -fPIC -DPIC -o .libs/calcpot.o ../../../src/tools/calcpot.c: In function 'c_tabpot': ../../../src/tools/calcpot.c:79:8: warning: unused variable 'qqO' [-Wunused-variable] real qqO,qj; ^~~ ../../../src/tools/calcpot.c:78:43: warning: unused variable 'rinv2O' [-Wunused-variable] real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O; ^~~~~~ ../../../src/tools/calcpot.c:78:24: warning: unused variable 'fsO' [-Wunused-variable] real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O; ^~~ ../../../src/tools/calcpot.c:78:20: warning: unused variable 'vcO' [-Wunused-variable] real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O; ^~~ ../../../src/tools/calcpot.c:78:16: warning: unused variable 'tzO' [-Wunused-variable] real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O; ^~~ ../../../src/tools/calcpot.c:78:12: warning: unused variable 'tyO' [-Wunused-variable] real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O; ^~~ ../../../src/tools/calcpot.c:78:8: warning: unused variable 'txO' [-Wunused-variable] real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O; ^~~ ../../../src/tools/calcpot.c:76:28: warning: unused variable 'fzO' [-Wunused-variable] real fxJ,fyJ,fzJ,fxO,fyO,fzO; ^~~ ../../../src/tools/calcpot.c:76:24: warning: unused variable 'fyO' [-Wunused-variable] real fxJ,fyJ,fzJ,fxO,fyO,fzO; ^~~ ../../../src/tools/calcpot.c:76:20: warning: unused variable 'fxO' [-Wunused-variable] real fxJ,fyJ,fzJ,fxO,fyO,fzO; ^~~ ../../../src/tools/calcpot.c:76:16: warning: unused variable 'fzJ' [-Wunused-variable] real fxJ,fyJ,fzJ,fxO,fyO,fzO; ^~~ ../../../src/tools/calcpot.c:76:12: warning: unused variable 'fyJ' [-Wunused-variable] real fxJ,fyJ,fzJ,fxO,fyO,fzO; ^~~ ../../../src/tools/calcpot.c:76:8: warning: unused variable 'fxJ' [-Wunused-variable] real fxJ,fyJ,fzJ,fxO,fyO,fzO; ^~~ ../../../src/tools/calcpot.c:75:38: warning: unused variable 'ggid' [-Wunused-variable] int ii,k,n,jnr,ii3,nj0,nj1,is3,j3,ggid; ^~~~ ../../../src/tools/calcpot.c:71:50: warning: unused variable 'FF' [-Wunused-variable] real r1,r1t,fijC,eps,eps2,Y,F,Fp,Geps,Heps2,VV,FF; ^~ ../../../src/tools/calcpot.c:71:15: warning: unused variable 'fijC' [-Wunused-variable] real r1,r1t,fijC,eps,eps2,Y,F,Fp,Geps,Heps2,VV,FF; ^~~~ ../../../src/tools/calcpot.c:70:14: warning: unused variable 'two' [-Wunused-variable] const real two = 2.000000; ^~~ ../../../src/tools/calcpot.c: In function 'calc_pot': ../../../src/tools/calcpot.c:176:15: warning: variable 'box_size' set but not used [-Wunused-but-set-variable] rvec box_size; ^~~~~~~~ ../../../src/tools/calcpot.c: In function 'init_calcpot': ../../../src/tools/calcpot.c:238:12: warning: variable 'box_size' set but not used [-Wunused-but-set-variable] rvec box_size; ^~~~~~~~ In file included from ../../../src/tools/calcpot.c:46: At top level: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../src/tools/calcpot.c:40: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/calcpot.c:40: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_xpm2ps.lo ../../../src/tools/gmx_xpm2ps.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_xpm2ps.c -fPIC -DPIC -o .libs/gmx_xpm2ps.o ../../../src/tools/gmx_xpm2ps.c: In function 'xpm_mat': ../../../src/tools/gmx_xpm2ps.c:559:14: warning: unused variable 'k' [-Wunused-variable] int i,j,k,x,y,col; ^ ../../../src/tools/gmx_xpm2ps.c:559:12: warning: unused variable 'j' [-Wunused-variable] int i,j,k,x,y,col; ^ ../../../src/tools/gmx_xpm2ps.c:558:10: warning: unused variable 'buf' [-Wunused-variable] char buf[100]; ^~~ ../../../src/tools/gmx_xpm2ps.c: In function 'tick_spacing': ../../../src/tools/gmx_xpm2ps.c:599:18: warning: unused variable 'bFive' [-Wunused-variable] bool bTryAgain,bFive; ^~~~~ ../../../src/tools/gmx_xpm2ps.c: In function 'ps_mat': ../../../src/tools/gmx_xpm2ps.c:644:12: warning: unused variable 'j' [-Wunused-variable] int i,j,x,y,col,leg=0; ^ ../../../src/tools/gmx_xpm2ps.c: In function 'write_combined_matrix': ../../../src/tools/gmx_xpm2ps.c:919:14: warning: unused variable 'map' [-Wunused-variable] t_mapping *map=NULL; ^~~ ../../../src/tools/gmx_xpm2ps.c: In function 'gmx_xpm2ps': ../../../src/tools/gmx_xpm2ps.c:1127:56: warning: unused variable 'bAdd' [-Wunused-variable] static bool bFrame=TRUE,bZeroLine=FALSE,bYonce=FALSE,bAdd=FALSE; ^~~~ At top level: ../../../src/tools/gmx_xpm2ps.c:1127:56: warning: 'bAdd' defined but not used [-Wunused-variable] In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_xpm2ps.c:45: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_xpm2ps.c:42: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ ../../../src/tools/gmx_xpm2ps.c: In function 'ps_mat': ../../../src/tools/gmx_xpm2ps.c:346:22: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(buf,"%g",mat[i].axis_x[j]); ^ In file included from /usr/include/stdio.h:862, from ../../../include/string2.h:56, from ../../../src/tools/gmx_xpm2ps.c:41: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 2 and 14 bytes into a destination of size 12 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../src/tools/gmx_xpm2ps.c:374:22: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(buf,"%g",mat[i].axis_y[j]); ^ In file included from /usr/include/stdio.h:862, from ../../../include/string2.h:56, from ../../../src/tools/gmx_xpm2ps.c:41: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 2 and 14 bytes into a destination of size 12 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_trjconv.lo ../../../src/tools/gmx_trjconv.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_trjconv.c -fPIC -DPIC -o .libs/gmx_trjconv.o ../../../src/tools/gmx_trjconv.c: In function 'calc_pbc_cluster': ../../../src/tools/gmx_trjconv.c:89:34: warning: unused variable 'is' [-Wunused-variable] int m,i,j,j0,j1,jj,ai,iter,is; ^~ ../../../src/tools/gmx_trjconv.c: In function 'put_molecule_com_in_box': ../../../src/tools/gmx_trjconv.c:252:29: warning: unused variable 'dx' [-Wunused-variable] rvec com,new_com,shift,dx,box_center; ^~ ../../../src/tools/gmx_trjconv.c: In function 'put_residue_com_in_box': ../../../src/tools/gmx_trjconv.c:303:37: warning: variable 'res_nat' set but not used [-Wunused-but-set-variable] atom_id i, j, res_start, res_end, res_nat; ^~~~~~~ ../../../src/tools/gmx_trjconv.c: In function 'gmx_trjconv': ../../../src/tools/gmx_trjconv.c:726:16: warning: unused variable 'xdr' [-Wunused-variable] int xdr=0; ^~~ ../../../src/tools/gmx_trjconv.c:725:42: warning: unused variable 'command' [-Wunused-variable] char top_title[256],title[256],command[256],filemode[5]; ^~~~~~~ ../../../src/tools/gmx_trjconv.c:715:21: warning: variable 'bFitXY' set but not used [-Wunused-but-set-variable] bool bFit,bFitXY,bPFit,bReset; ^~~~~~ ../../../src/tools/gmx_trjconv.c:707:25: warning: unused variable 'gn_rms' [-Wunused-variable] char *gn_fit,*gn_rms; ^~~~~~ ../../../src/tools/gmx_trjconv.c:706:26: warning: unused variable 'ind_rms' [-Wunused-variable] atom_id *ind_fit,*ind_rms; ^~~~~~~ ../../../src/tools/gmx_trjconv.c:705:21: warning: unused variable 'irms' [-Wunused-variable] int ifit,irms,my_clust=-1; ^~~~ ../../../src/tools/gmx_trjconv.c:695:55: warning: unused variable 'nre' [-Wunused-variable] int m,i,d,frame,outframe,natoms,nout,ncent,nre,newstep=0,model_nr; ^~~ ../../../src/tools/gmx_trjconv.c:694:23: warning: unused variable 'lambda' [-Wunused-variable] real xtcpr, lambda,*w_rls=NULL; ^~~~~~ ../../../src/tools/gmx_trjconv.c:694:16: warning: unused variable 'xtcpr' [-Wunused-variable] real xtcpr, lambda,*w_rls=NULL; ^~~~~ ../../../src/tools/gmx_trjconv.c:693:49: warning: unused variable 'dx' [-Wunused-variable] rvec *xp=NULL,x_shift,hbox,box_center,dx; ^~ ../../../src/tools/gmx_trjconv.c:693:38: warning: unused variable 'box_center' [-Wunused-variable] rvec *xp=NULL,x_shift,hbox,box_center,dx; ^~~~~~~~~~ In file included from ../../../src/tools/gmx_trjconv.c:57: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_trjconv.c:57: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/tools/gmx_trjconv.c:53: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_trjconv.c:51: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_trjconv.c:47: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ ../../../src/tools/gmx_trjconv.c: In function 'gmx_trjconv': ../../../src/tools/gmx_trjconv.c:1325:46: warning: '%s' directive writing up to 255 bytes into a region of size 233 [-Wformat-overflow=] sprintf(title,"Generated by trjconv : %s t= %9.5f", ^~ top_title,fr.time); ~~~~~~~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../include/typedefs.h:52, from ../../../include/macros.h:49, from ../../../src/tools/gmx_trjconv.c:42: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 37 and 599 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../src/tools/gmx_trjconv.c:1336:20: warning: ' t= ' directive writing 4 bytes into a region of size between 1 and 256 [-Wformat-overflow=] sprintf(title,"%s t= %9.5f",top_title,frout.time); ^~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../include/typedefs.h:52, from ../../../include/macros.h:49, from ../../../src/tools/gmx_trjconv.c:42: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 14 and 576 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o addconf.lo ../../../src/tools/addconf.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/addconf.c -fPIC -DPIC -o .libs/addconf.o ../../../src/tools/addconf.c: In function 'do_nsgrid': ../../../src/tools/addconf.c:205:14: warning: variable 'box_size' set but not used [-Wunused-but-set-variable] rvec box_size; ^~~~~~~~ ../../../src/tools/addconf.c: In function 'add_conf': ../../../src/tools/addconf.c:328:23: warning: unused variable 'xpp' [-Wunused-variable] rvec dx,xi,xj,xpp,*x_all,*v_all; ^~~ ../../../src/tools/addconf.c:326:34: warning: unused variable 'dz1' [-Wunused-variable] int dx0,dx1,dy0,dy1,dz0,dz1; ^~~ ../../../src/tools/addconf.c:326:30: warning: unused variable 'dz0' [-Wunused-variable] int dx0,dx1,dy0,dy1,dz0,dz1; ^~~ ../../../src/tools/addconf.c:326:26: warning: unused variable 'dy1' [-Wunused-variable] int dx0,dx1,dy0,dy1,dz0,dz1; ^~~ ../../../src/tools/addconf.c:326:22: warning: unused variable 'dy0' [-Wunused-variable] int dx0,dx1,dy0,dy1,dz0,dz1; ^~~ ../../../src/tools/addconf.c:326:18: warning: unused variable 'dx1' [-Wunused-variable] int dx0,dx1,dy0,dy1,dz0,dz1; ^~~ ../../../src/tools/addconf.c:326:14: warning: unused variable 'dx0' [-Wunused-variable] int dx0,dx1,dy0,dy1,dz0,dz1; ^~~ ../../../src/tools/addconf.c:325:44: warning: unused variable 'maxincell' [-Wunused-variable] int prev,resnr,nresadd,d,k,ncells,maxincell; ^~~~~~~~~ ../../../src/tools/addconf.c:325:37: warning: unused variable 'ncells' [-Wunused-variable] int prev,resnr,nresadd,d,k,ncells,maxincell; ^~~~~~ ../../../src/tools/addconf.c:325:35: warning: unused variable 'k' [-Wunused-variable] int prev,resnr,nresadd,d,k,ncells,maxincell; ^ ../../../src/tools/addconf.c:325:33: warning: unused variable 'd' [-Wunused-variable] int prev,resnr,nresadd,d,k,ncells,maxincell; ^ ../../../src/tools/addconf.c:325:19: warning: unused variable 'resnr' [-Wunused-variable] int prev,resnr,nresadd,d,k,ncells,maxincell; ^~~~~ ../../../src/tools/addconf.c:324:47: warning: unused variable 'iprot' [-Wunused-variable] int i,j,jj,m,j0,j1,jjj,jnres,jnr,inr,iprot,is1,is2; ^~~~~ ../../../src/tools/addconf.c:324:21: warning: unused variable 'm' [-Wunused-variable] int i,j,jj,m,j0,j1,jjj,jnres,jnr,inr,iprot,is1,is2; ^ ../../../src/tools/addconf.c:324:18: warning: unused variable 'jj' [-Wunused-variable] int i,j,jj,m,j0,j1,jjj,jnres,jnr,inr,iprot,is1,is2; ^~ ../../../src/tools/addconf.c:322:47: warning: unused variable 'ib2' [-Wunused-variable] real max_vdw,*r_prot,*r_all,n2,r2,ib1,ib2; ^~~ ../../../src/tools/addconf.c:322:43: warning: unused variable 'ib1' [-Wunused-variable] real max_vdw,*r_prot,*r_all,n2,r2,ib1,ib2; ^~~ At top level: ../../../src/tools/addconf.c:70:13: warning: 'set_margin' defined but not used [-Wunused-function] static void set_margin(t_atoms *atoms, rvec *x, real *r) ^~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/tools/addconf.c:47: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/addconf.c:46: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../src/tools/addconf.c:42: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/addconf.c:42: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[2]: *** [Makefile:387: all-recursive] Error 1 make[1]: *** [Makefile:326: all] Error 2 make: *** [Makefile:415: all-recursive] Error 1 error: Bad exit status from /usr/src/tmp/rpm-tmp.63040 (%build) RPM build errors: Bad exit status from /usr/src/tmp/rpm-tmp.63040 (%build) Command exited with non-zero status 1 135.70user 44.98system 0:27.93elapsed 646%CPU (0avgtext+0avgdata 103556maxresident)k 0inputs+0outputs (0major+12366225minor)pagefaults 0swaps hsh-rebuild: rebuild of `gromacs-4.0.7-alt8.src.rpm' failed. Command exited with non-zero status 1 144.94user 49.51system 0:42.07elapsed 462%CPU (0avgtext+0avgdata 120804maxresident)k 56inputs+0outputs (35015major+12858537minor)pagefaults 0swaps