<86>Aug 8 11:09:33 userdel[3210182]: delete user 'rooter' <86>Aug 8 11:09:33 userdel[3210182]: removed group 'rooter' owned by 'rooter' <86>Aug 8 11:09:33 groupadd[3210187]: group added to /etc/group: name=rooter, GID=618 <86>Aug 8 11:09:33 groupadd[3210187]: group added to /etc/gshadow: name=rooter <86>Aug 8 11:09:33 groupadd[3210187]: new group: name=rooter, GID=618 <86>Aug 8 11:09:33 useradd[3210191]: new user: name=rooter, UID=618, GID=618, home=/root, shell=/bin/bash <86>Aug 8 11:09:33 userdel[3210197]: delete user 'builder' <86>Aug 8 11:09:33 userdel[3210197]: removed group 'builder' owned by 'builder' <86>Aug 8 11:09:33 userdel[3210197]: removed shadow group 'builder' owned by 'builder' <86>Aug 8 11:09:33 groupadd[3210202]: group added to /etc/group: name=builder, GID=619 <86>Aug 8 11:09:33 groupadd[3210202]: group added to /etc/gshadow: name=builder <86>Aug 8 11:09:33 groupadd[3210202]: new group: name=builder, GID=619 <86>Aug 8 11:09:33 useradd[3210206]: new user: name=builder, UID=619, GID=619, home=/usr/src, shell=/bin/bash <13>Aug 8 11:09:36 rpmi: xorg-proto-devel-2021.4-alt1 p9+272150.100.1.1 1621427342 installed <13>Aug 8 11:09:36 rpmi: libfftw3-common-3.3.8-alt1 sisyphus+226899.100.1.1 1554782385 installed <13>Aug 8 11:09:36 rpmi: libgomp1-8.4.1-alt0.p9.1 p9+247559.100.2.1 1585587756 installed <13>Aug 8 11:09:36 rpmi: libnl3-3.4.0-alt2 1507570084 installed <13>Aug 8 11:09:37 rpmi: libibverbs-30.0-alt3 p9+255465.100.1.1 1595874072 installed <13>Aug 8 11:09:37 rpmi: libXau-1.0.9-alt1 sisyphus+223149.200.2.1 1551268156 installed <13>Aug 8 11:09:37 rpmi: libICE-1.0.9-alt1 1409902719 installed <13>Aug 8 11:09:37 rpmi: libquadmath0-8.4.1-alt0.p9.1 p9+247559.100.2.1 1585587756 installed <13>Aug 8 11:09:37 rpmi: udev-rules-1:246.14-alt1 p9+279856.100.1.1 1626804740 installed <13>Aug 8 11:09:37 rpmi: libquadmath8-devel-8.4.1-alt0.p9.1 p9+247559.100.2.1 1585587756 installed <13>Aug 8 11:09:37 rpmi: libgfortran5-8.4.1-alt0.p9.1 p9+247559.100.2.1 1585587756 installed <13>Aug 8 11:09:37 rpmi: libSM-1.2.3-alt1 sisyphus+226734.100.2.1 1554586157 installed <13>Aug 8 11:09:37 rpmi: librdmacm-30.0-alt3 p9+255465.100.1.1 1595874072 installed <13>Aug 8 11:09:37 rpmi: libnuma-2.0.11-alt1 1450022595 installed <13>Aug 8 11:09:37 rpmi: libopenblas-0.3.9-alt2 p9+274919.40.2.1 1624305203 installed <13>Aug 8 11:09:37 rpmi: libibumad-30.0-alt3 p9+255465.100.1.1 1595874072 installed <13>Aug 8 11:09:37 rpmi: libmnl-1.0.4-alt2 sisyphus+220683.100.1.1 1549335455 installed <13>Aug 8 11:09:37 rpmi: libpng16-1.6.36-alt1 sisyphus+219478.100.1.1 1547633315 installed <13>Aug 8 11:09:37 rpmi: libicu65-1:6.5.1-alt2 p9+270410.100.1.1 1619007054 installed <13>Aug 8 11:09:37 rpmi: libgraphite2-1.3.13-alt2 sisyphus+226799.100.1.1 1554648233 installed <13>Aug 8 11:09:38 rpmi: libharfbuzz-2.6.2-alt1 p9+277458.500.1.1 1625577087 installed <13>Aug 8 11:09:38 rpmi: libfreetype-2.10.1-alt1.1.p9.1 p9+260179.200.3.1 1603971391 installed <13>Aug 8 11:09:38 rpmi: libexpat-2.2.10-alt1 p9+261554.100.1.1 1605103332 installed <13>Aug 8 11:09:38 rpmi: fontconfig-2.13.1-alt1 p9+247340.200.3.1 1583400482 installed Updating fonts cache: <29>Aug 8 11:09:39 fontconfig: Updating fonts cache: succeeded [ DONE ] <13>Aug 8 11:09:39 rpmi: liblz4-1:1.9.2-alt1 p9+238696.500.1.1 1570228072 installed <13>Aug 8 11:09:39 rpmi: libiptables-1.8.3-alt2 p9+238412.300.6.1 1570110065 installed <13>Aug 8 11:09:39 rpmi: libidn2-2.2.0-alt1 p9+229971.100.2.1 1558696275 installed <13>Aug 8 11:09:39 rpmi: libdevmapper-1.02.173-alt1 p9+259866.100.1.1 1602632323 installed <13>Aug 8 11:09:39 rpmi: msulogin-1.0-alt1 1366288481 installed <13>Aug 8 11:09:39 rpmi: mount-2.33.2-alt2 p9+254003.100.1.1 1593108026 installed <13>Aug 8 11:09:39 rpmi: sysvinit-2.88-alt5 1424350685 installed <13>Aug 8 11:09:39 rpmi: libharfbuzz-icu-2.6.2-alt1 p9+277458.500.1.1 1625577087 installed <13>Aug 8 11:09:39 rpmi: libgraphite2-devel-1.3.13-alt2 sisyphus+226799.100.1.1 1554648233 installed <13>Aug 8 11:09:39 rpmi: icu-utils-1:6.5.1-alt2 p9+270410.100.1.1 1619007054 installed <13>Aug 8 11:09:39 rpmi: libicu-devel-1:6.5.1-alt2 p9+270410.100.1.1 1619007054 installed <13>Aug 8 11:09:39 rpmi: libnetlink-5.3.0-alt1 p9+238696.600.1.1 1570228135 installed <13>Aug 8 11:09:39 rpmi: libibmad-30.0-alt3 p9+255465.100.1.1 1595874072 installed <13>Aug 8 11:09:39 rpmi: libibnetdisc-30.0-alt3 p9+255465.100.1.1 1595874072 installed <13>Aug 8 11:09:39 rpmi: libopenblas-devel-0.3.9-alt2 p9+274919.40.2.1 1624305203 installed <13>Aug 8 11:09:39 rpmi: libnuma-devel-2.0.11-alt1 1450022595 installed <13>Aug 8 11:09:39 rpmi: libfftw3q-3.3.8-alt1 sisyphus+226899.100.1.1 1554782385 installed <13>Aug 8 11:09:39 rpmi: libICE-devel-1.0.9-alt1 1409902719 installed <13>Aug 8 11:09:39 rpmi: libSM-devel-1.2.3-alt1 sisyphus+226734.100.2.1 1554586157 installed <13>Aug 8 11:09:39 rpmi: libXau-devel-1.0.9-alt1 sisyphus+223149.200.2.1 1551268156 installed <13>Aug 8 11:09:39 rpmi: xorg-printproto-devel-1.0.5-alt1 1303466042 installed <13>Aug 8 11:09:39 rpmi: libfftw3-3.3.8-alt1 sisyphus+226899.100.1.1 1554782385 installed <13>Aug 8 11:09:39 rpmi: libfftw3f-3.3.8-alt1 sisyphus+226899.100.1.1 1554782385 installed <13>Aug 8 11:09:39 rpmi: libfftw3l-3.3.8-alt1 sisyphus+226899.100.1.1 1554782385 installed <13>Aug 8 11:09:39 rpmi: pciids-20210726-alt1 p9+281308.100.1.1 1627531014 installed <13>Aug 8 11:09:39 rpmi: tcsh-6.20.00-alt2 1503603377 installed <13>Aug 8 11:09:39 rpmi: rpm-macros-mpi-selector-1.0.3-alt3 1504498675 installed <13>Aug 8 11:09:39 rpmi: mpi-selector-1.0.3-alt3 1504498675 installed <13>Aug 8 11:09:39 rpmi: openmpi-2.0.1-alt7 sisyphus+223725.100.1.1 1551851518 installed <13>Aug 8 11:09:39 rpmi: libpci-3.7.0-alt1 p9+253477.100.2.1 1592498098 installed <13>Aug 8 11:09:39 rpmi: pciutils-3.7.0-alt1 p9+253477.100.2.1 1592498098 installed <13>Aug 8 11:09:39 rpmi: libxblas-1.0.248-alt1.3 sisyphus+229150.100.1.1 1557388758 installed <13>Aug 8 11:09:40 rpmi: liblapack-1:3.8.0-alt3 sisyphus+221521.100.1.1 1550134909 installed <13>Aug 8 11:09:40 rpmi: libjpeg-2:2.0.2-alt1 sisyphus+226996.100.1.1 1554902884 installed <13>Aug 8 11:09:40 rpmi: libgsl-2.5-alt1 sisyphus.212796.100 1536590939 installed <13>Aug 8 11:09:40 rpmi: libX11-locales-3:1.7.2-alt1 p9+273972.100.2.1 1623924318 installed <13>Aug 8 11:09:40 rpmi: libXdmcp-1.1.3-alt1 sisyphus+225206.600.1.2 1552949347 installed <13>Aug 8 11:09:40 rpmi: libxcb-1.13.1-alt1 sisyphus+226527.100.2.2 1554593799 installed <13>Aug 8 11:09:40 rpmi: libX11-3:1.7.2-alt1 p9+273972.100.2.1 1623924318 installed <13>Aug 8 11:09:40 rpmi: libXext-1.3.4-alt1 sisyphus+225206.700.1.2 1552949422 installed <13>Aug 8 11:09:40 rpmi: libXt-1.1.4-alt1 1369984716 installed <13>Aug 8 11:09:40 rpmi: libXrender-0.9.10-alt1 p9+261891.200.2.1 1606149106 installed <13>Aug 8 11:09:40 rpmi: libXft-2.3.3-alt1 sisyphus+225206.1000.3.2 1552987714 installed <13>Aug 8 11:09:40 rpmi: libXmu-1.1.3-alt1 sisyphus+225206.1200.1.2 1552949629 installed <13>Aug 8 11:09:40 rpmi: libXp-1.0.2-alt1 1370421423 installed <13>Aug 8 11:09:40 rpmi: libopenmotif4-2.3.8-alt1 sisyphus+222959.100.1.1 1551299712 installed <13>Aug 8 11:09:41 rpmi: libxcb-devel-1.13.1-alt1 sisyphus+226527.100.2.2 1554593799 installed <13>Aug 8 11:09:41 rpmi: libX11-devel-3:1.7.2-alt1 p9+273972.100.2.1 1623924318 installed <13>Aug 8 11:09:41 rpmi: libXrender-devel-0.9.10-alt1 p9+261891.200.2.1 1606149106 installed <13>Aug 8 11:09:41 rpmi: libXt-devel-1.1.4-alt1 1369984716 installed <13>Aug 8 11:09:41 rpmi: libatm-2.5.1-alt6 p9+263604.300.3.1 1608575724 installed <13>Aug 8 11:09:41 rpmi: chrooted-0.3.11-alt1 p9+249340.100.2.1 1586263298 installed <13>Aug 8 11:09:41 rpmi: chrooted-resolv-0.3.1-alt2 1176155257 installed <13>Aug 8 11:09:41 rpmi: gcc-fortran-common-1.4.23-alt1 sisyphus+221902.2500.4.1 1550596716 installed <13>Aug 8 11:09:41 rpmi: libgfortran8-devel-8.4.1-alt0.p9.1 p9+247559.100.2.1 1585587756 installed <13>Aug 8 11:09:42 rpmi: gcc8-fortran-8.4.1-alt0.p9.1 p9+247559.100.2.1 1585587756 installed <13>Aug 8 11:09:42 rpmi: gcc-fortran-8-alt2 p9+246536.100.3.1 1582643803 installed <13>Aug 8 11:09:42 rpmi: gcc-c++-common-1.4.23-alt1 sisyphus+221902.2500.4.1 1550596716 installed <13>Aug 8 11:09:42 rpmi: libstdc++8-devel-8.4.1-alt0.p9.1 p9+247559.100.2.1 1585587756 installed <13>Aug 8 11:09:43 rpmi: gcc8-c++-8.4.1-alt0.p9.1 p9+247559.100.2.1 1585587756 installed <13>Aug 8 11:09:43 rpmi: gcc-c++-8-alt2 p9+246536.100.3.1 1582643803 installed <13>Aug 8 11:09:43 rpmi: libgdbm-1.8.3-alt10 1454943313 installed <13>Aug 8 11:09:43 rpmi: xml-utils-1:2.9.10-alt6 p9+266566.100.3.1 1614357016 installed <13>Aug 8 11:09:43 rpmi: rpm-build-gir-0.7.3-alt2 p9+234356.40.2.1 1562933848 installed <13>Aug 8 11:09:43 rpmi: udev-hwdb-1:246.14-alt1 p9+279856.100.1.1 1626804740 installed <13>Aug 8 11:09:43 rpmi: libpcre2-10.33-alt1.1 sisyphus+227856.100.1.2 1555786372 installed <13>Aug 8 11:09:43 rpmi: libjson-c4-0.13.1-alt2 p9+254507.100.1.1 1593876138 installed <13>Aug 8 11:09:43 rpmi: libargon2-20190702-alt1 p9+235535.100.1.1 1565051954 installed <13>Aug 8 11:09:43 rpmi: libgpg-error-1.36-alt1 p9+261942.140.4.1 1606237682 installed <13>Aug 8 11:09:43 rpmi: libgcrypt20-1.8.5-alt3 p9+261942.200.4.1 1606237844 installed <13>Aug 8 11:09:43 rpmi: libsystemd-1:246.14-alt1 p9+279856.100.1.1 1626804740 installed <13>Aug 8 11:09:43 rpmi: hwclock-1:2.33.2-alt2 p9+254003.100.1.1 1593108026 installed <13>Aug 8 11:09:43 rpmi: hashalot-0.3-alt1.qa1 1366323553 installed <13>Aug 8 11:09:43 rpmi: losetup-2.33.2-alt2 p9+254003.100.1.1 1593108026 installed <13>Aug 8 11:09:43 rpmi: lsblk-2.33.2-alt2 p9+254003.100.1.1 1593108026 installed <13>Aug 8 11:09:43 rpmi: libp11-kit-0.23.15-alt2 p9+254920.2400.19.1 1601385869 installed <13>Aug 8 11:09:43 rpmi: libtasn1-4.14-alt1 p9+235792.100.2.1 1565425233 installed <13>Aug 8 11:09:43 rpmi: rpm-macros-alternatives-0.5.1-alt1 sisyphus+226946.100.1.1 1554830426 installed <13>Aug 8 11:09:43 rpmi: alternatives-0.5.1-alt1 sisyphus+226946.100.1.1 1554830426 installed <13>Aug 8 11:09:43 rpmi: ca-certificates-2020.06.29-alt1 p9+258899.100.3.1 1601998604 installed <13>Aug 8 11:09:43 rpmi: ca-trust-0.1.2-alt1 p9+233349.100.1.1 1561655062 installed <13>Aug 8 11:09:43 rpmi: p11-kit-trust-0.23.15-alt2 p9+254920.2400.19.1 1601385869 installed <13>Aug 8 11:09:43 rpmi: libcrypto1.1-1.1.1k-alt1 p9+268376.100.3.1 1616720932 installed <13>Aug 8 11:09:43 rpmi: libkmod-26-alt1 sisyphus+226359.100.1.1 1554129988 installed <13>Aug 8 11:09:43 rpmi: kmod-26-alt1 sisyphus+226359.100.1.1 1554129988 installed <13>Aug 8 11:09:43 rpmi: libcryptsetup-2.3.3-alt1 p9+252585.100.1.1 1590914365 installed <13>Aug 8 11:09:43 rpmi: startup-0.9.9.10-alt1 p9+263519.100.1.1 1608121516 installed <13>Aug 8 11:09:44 rpmi: systemd-utils-1:246.14-alt1 p9+279856.100.1.1 1626804740 installed <13>Aug 8 11:09:44 rpmi: dmsetup-1.02.173-alt1 p9+259866.100.1.1 1602632323 installed <86>Aug 8 11:09:44 groupadd[3211990]: group added to /etc/group: name=tape, GID=499 <86>Aug 8 11:09:44 groupadd[3211990]: group added to /etc/gshadow: name=tape <86>Aug 8 11:09:44 groupadd[3211990]: new group: name=tape, GID=499 <86>Aug 8 11:09:44 groupadd[3211994]: group added to /etc/group: name=dialout, GID=498 <86>Aug 8 11:09:44 groupadd[3211994]: group added to /etc/gshadow: name=dialout <86>Aug 8 11:09:44 groupadd[3211994]: new group: name=dialout, GID=498 <86>Aug 8 11:09:44 groupadd[3211998]: group added to /etc/group: name=input, GID=497 <86>Aug 8 11:09:44 groupadd[3211998]: group added to /etc/gshadow: name=input <86>Aug 8 11:09:44 groupadd[3211998]: new group: name=input, GID=497 <86>Aug 8 11:09:44 groupadd[3212002]: group added to /etc/group: name=video, GID=496 <86>Aug 8 11:09:44 groupadd[3212002]: group added to /etc/gshadow: name=video <86>Aug 8 11:09:44 groupadd[3212002]: new group: name=video, GID=496 <86>Aug 8 11:09:44 groupadd[3212007]: group added to /etc/group: name=render, GID=495 <86>Aug 8 11:09:44 groupadd[3212007]: group added to /etc/gshadow: name=render <86>Aug 8 11:09:44 groupadd[3212007]: new group: name=render, GID=495 <86>Aug 8 11:09:44 groupadd[3212011]: group added to /etc/group: name=vmusers, GID=494 <86>Aug 8 11:09:44 groupadd[3212011]: group added to /etc/gshadow: name=vmusers <86>Aug 8 11:09:44 groupadd[3212011]: new group: name=vmusers, GID=494 <13>Aug 8 11:09:44 rpmi: udev-1:246.14-alt1 p9+279856.100.1.1 1626804740 installed <13>Aug 8 11:09:44 rpmi: libssl1.1-1.1.1k-alt1 p9+268376.100.3.1 1616720932 installed <13>Aug 8 11:09:44 rpmi: libpython3-3.7.4-alt3 p9+249932.100.2.1 1587126956 installed <13>Aug 8 11:09:44 rpmi: python3-3.7.4-alt3 p9+249932.100.2.1 1587126956 installed <13>Aug 8 11:09:44 rpmi: python3-base-3.7.4-alt3 p9+249932.100.2.1 1587126956 installed <13>Aug 8 11:09:44 rpmi: glib2-devel-2.60.7-alt1 p9+237353.100.2.2 1568372980 installed <13>Aug 8 11:09:44 rpmi: libharfbuzz-devel-2.6.2-alt1 p9+277458.500.1.1 1625577087 installed <13>Aug 8 11:09:45 rpmi: libfreetype-devel-2.10.1-alt1.1.p9.1 p9+260179.200.3.1 1603971391 installed <13>Aug 8 11:09:45 rpmi: fontconfig-devel-2.13.1-alt1 p9+247340.200.3.1 1583400482 installed <13>Aug 8 11:09:45 rpmi: libXft-devel-2.3.3-alt1 sisyphus+225206.1000.3.2 1552987714 installed <86>Aug 8 11:09:45 groupadd[3212064]: group added to /etc/group: name=iputils, GID=493 <86>Aug 8 11:09:45 groupadd[3212064]: group added to /etc/gshadow: name=iputils <86>Aug 8 11:09:45 groupadd[3212064]: new group: name=iputils, GID=493 <86>Aug 8 11:09:45 useradd[3212069]: new user: name=iputils, UID=499, GID=493, home=/dev/null, shell=/dev/null <86>Aug 8 11:09:45 groupadd[3212075]: group added to /etc/group: name=netadmin, GID=492 <86>Aug 8 11:09:45 groupadd[3212075]: group added to /etc/gshadow: name=netadmin <86>Aug 8 11:09:45 groupadd[3212075]: new group: name=netadmin, GID=492 <13>Aug 8 11:09:45 rpmi: iputils-20190709-alt1.1.p9 p9+252615.100.1.1 1590951914 installed sysctl: cannot stat /proc/sys/net/ipv4/ping_group_range: No such file or directory <13>Aug 8 11:09:45 rpmi: iproute2-5.3.0-alt1 p9+238696.600.1.1 1570228135 installed <13>Aug 8 11:09:45 rpmi: rdma-core-30.0-alt3 p9+255465.100.1.1 1595874072 installed <13>Aug 8 11:09:45 rpmi: ibacm-30.0-alt3 p9+255465.100.1.1 1595874072 installed <13>Aug 8 11:09:45 rpmi: rdma-core-devel-30.0-alt3 p9+255465.100.1.1 1595874072 installed <13>Aug 8 11:09:45 rpmi: openmpi-devel-2.0.1-alt7 sisyphus+223725.100.1.1 1551851518 installed <13>Aug 8 11:09:45 rpmi: libopenmotif-devel-2.3.8-alt1 sisyphus+222959.100.1.1 1551299712 installed <13>Aug 8 11:09:45 rpmi: libgsl-devel-2.5-alt1 sisyphus.212796.100 1536590939 installed <13>Aug 8 11:09:45 rpmi: liblapack-devel-1:3.8.0-alt3 sisyphus+221521.100.1.1 1550134909 installed <13>Aug 8 11:09:45 rpmi: libfftw3-devel-3.3.8-alt1 sisyphus+226899.100.1.1 1554782385 installed <13>Aug 8 11:09:45 rpmi: xorg-cf-files-1.0.6-alt1 1453137637 installed <13>Aug 8 11:09:45 rpmi: imake-1.0.7-alt3 1518797773 installed <13>Aug 8 11:09:45 rpmi: chrpath-0.16-alt1 1453066315 installed Building target platforms: x86_64 Building for target x86_64 Wrote: /usr/src/in/nosrpm/gromacs-4.0.7-alt8.nosrc.rpm (w1.gzdio) <13>Aug 8 11:09:48 rpmi: libtool_1.5-3:1.5.26-alt12 1533413564 installed Installing gromacs-4.0.7-alt8.src.rpm Building target platforms: x86_64 Building for target x86_64 Executing(%prep): /bin/sh -e /usr/src/tmp/rpm-tmp.36448 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + rm -rf gromacs-4.0.7 + echo 'Source #0 (gromacs-4.0.7.tar.gz):' Source #0 (gromacs-4.0.7.tar.gz): + /bin/gzip -dc /usr/src/RPM/SOURCES/gromacs-4.0.7.tar.gz + /bin/tar -xf - + cd gromacs-4.0.7 + /bin/chmod -c -Rf u+rwX,go-w . + echo 'Patch #0 (gromacs-4.0.3-alt-LIBS-LDADD.patch):' Patch #0 (gromacs-4.0.3-alt-LIBS-LDADD.patch): + /usr/bin/patch -p0 patching file configure.ac patching file src/tools/Makefile.am + sed -i 's|lib/openmpi|lib64/openmpi|' configure.ac ++ find ./ -name Makefile.am + sed -i 's|^\(AM_CPPFLAGS.*\)|\1 -g|' ./src/tools/Makefile.am ./src/ngmx/Makefile.am ./src/mdlib/Makefile.am ./src/kernel/Makefile.am ./src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/Makefile.am ./src/gmxlib/nonbonded/nb_kernel_x86_64_sse/Makefile.am ./src/gmxlib/nonbonded/nb_kernel_ppc_altivec/Makefile.am ./src/gmxlib/nonbonded/nb_kernel_ia64_single/Makefile.am ./src/gmxlib/nonbonded/nb_kernel_ia64_double/Makefile.am ./src/gmxlib/nonbonded/nb_kernel_ia32_sse2/Makefile.am ./src/gmxlib/nonbonded/nb_kernel_ia32_sse/Makefile.am ./src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/Makefile.am ./src/gmxlib/nonbonded/nb_kernel_bluegene/Makefile.am ./src/gmxlib/nonbonded/nb_kernel/Makefile.am ./src/gmxlib/nonbonded/Makefile.am ./src/gmxlib/gmx_lapack/Makefile.am ./src/gmxlib/gmx_blas/Makefile.am ./src/gmxlib/Makefile.am ./src/contrib/Makefile.am ./src/Makefile.am ./share/tutor/water/Makefile.am ./share/tutor/speptide/Makefile.am ./share/tutor/nmr2/Makefile.am ./share/tutor/nmr1/Makefile.am ./share/tutor/mixed/Makefile.am ./share/tutor/methanol/Makefile.am ./share/tutor/gmxdemo/Makefile.am ./share/tutor/Makefile.am ./share/top/Makefile.am ./share/template/Makefile.am ./share/html/online/Makefile.am ./share/html/images/Makefile.am ./share/html/Makefile.am ./share/Makefile.am ./scripts/Makefile.am ./man/man1/Makefile.am ./man/Makefile.am ./include/types/Makefile.am ./include/Makefile.am ./admin/Makefile.am ./Makefile.am + exit 0 Executing(%build): /bin/sh -e /usr/src/tmp/rpm-tmp.33677 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd gromacs-4.0.7 ++ mpi-selector --list ++ grep openmpi + mpi-selector --set openmpi + source /etc/profile.d/mpi-selector.sh ++ mpi_selector_dir=/var/lib/mpi-selector/data ++ mpi_selector_homefile=/usr/src/.mpi-selector ++ mpi_selector_sysfile=/etc/sysconfig/mpi-selector ++ mpi_selection= ++ test -f /usr/src/.mpi-selector +++ cat /usr/src/.mpi-selector ++ mpi_selection=openmpi ++ test openmpi '!=' '' -a -f /var/lib/mpi-selector/data/openmpi.sh ++ . /var/lib/mpi-selector/data/openmpi.sh +++ echo /usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games +++ grep -q /usr/lib64/openmpi/bin +++ PATH=/usr/lib64/openmpi/bin:/usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games +++ export PATH +++ echo +++ grep -q /usr/lib64/openmpi/lib +++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib +++ export LD_LIBRARY_PATH +++ echo +++ grep -q /usr/lib64/openmpi/man +++ MANPATH=/usr/lib64/openmpi/man: +++ export MANPATH + export 'OMPI_LDFLAGS=-Wl,--as-needed,-rpath,/usr/lib64/openmpi/lib -L/usr/lib64/openmpi/lib' + OMPI_LDFLAGS='-Wl,--as-needed,-rpath,/usr/lib64/openmpi/lib -L/usr/lib64/openmpi/lib' + sed -i 's|^runpath_var=LD_RUN_PATH|runpath_var=|g' acinclude.m4 + autoreconf -fisv autoreconf-default: Entering directory `.' autoreconf-default: configure.ac: not using Gettext autoreconf-default: running: aclocal --force configure.ac:419: warning: AC_CACHE_VAL(ac_o3, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_faltivec, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_maltivec, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_mabialtivec, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_fno_schedule_insns, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_m_cpu_7450, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_m_tune_970, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_m_cpu_powerpc, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_funroll_all_loops, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_guessed_cflags, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_guessed_fflags, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:507: ACX_CHECK_F77_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:455: warning: AC_CACHE_VAL(acx_float_format, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:164: ACX_FLOAT_FORMAT is expanded from... configure.ac:455: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from... acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from... acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from... acinclude.m4:6633: AC_LIBTOOL_PROG_LD_SHLIBS is expanded from... acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from... acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from... acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from... acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from... acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from... acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:5190: _LT_AC_LANG_F77_CONFIG is expanded from... acinclude.m4:5189: AC_LIBTOOL_LANG_F77_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:5190: _LT_AC_LANG_F77_CONFIG is expanded from... acinclude.m4:5189: AC_LIBTOOL_LANG_F77_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from... acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from... acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from... acinclude.m4:6633: AC_LIBTOOL_PROG_LD_SHLIBS is expanded from... acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from... acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level autoreconf-default: configure.ac: tracing configure.ac:419: warning: AC_CACHE_VAL(ac_o3, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_faltivec, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_maltivec, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_mabialtivec, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_fno_schedule_insns, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_m_cpu_7450, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_m_tune_970, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_m_cpu_powerpc, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_funroll_all_loops, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_guessed_cflags, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_guessed_fflags, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:507: ACX_CHECK_F77_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:455: warning: AC_CACHE_VAL(acx_float_format, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:164: ACX_FLOAT_FORMAT is expanded from... configure.ac:455: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from... acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from... acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from... acinclude.m4:6633: AC_LIBTOOL_PROG_LD_SHLIBS is expanded from... acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from... acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from... acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from... acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from... acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from... acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:5190: _LT_AC_LANG_F77_CONFIG is expanded from... acinclude.m4:5189: AC_LIBTOOL_LANG_F77_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:5190: _LT_AC_LANG_F77_CONFIG is expanded from... acinclude.m4:5189: AC_LIBTOOL_LANG_F77_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from... acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from... acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from... acinclude.m4:6633: AC_LIBTOOL_PROG_LD_SHLIBS is expanded from... acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from... acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level autoreconf-default: running: libtoolize --force You should update your `aclocal.m4' by running aclocal. Putting files in AC_CONFIG_AUX_DIR, `config'. autoreconf-default: configure.ac: not using Intltool autoreconf-default: configure.ac: not using gtk-doc configure.ac:419: warning: AC_CACHE_VAL(ac_o3, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_faltivec, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_maltivec, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_mabialtivec, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_fno_schedule_insns, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_m_cpu_7450, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_m_tune_970, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_m_cpu_powerpc, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_funroll_all_loops, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_guessed_cflags, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_guessed_fflags, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:507: ACX_CHECK_F77_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:455: warning: AC_CACHE_VAL(acx_float_format, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:164: ACX_FLOAT_FORMAT is expanded from... configure.ac:455: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from... acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from... acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from... acinclude.m4:6633: AC_LIBTOOL_PROG_LD_SHLIBS is expanded from... acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from... acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from... acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from... acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from... acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from... acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:5190: _LT_AC_LANG_F77_CONFIG is expanded from... acinclude.m4:5189: AC_LIBTOOL_LANG_F77_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:5190: _LT_AC_LANG_F77_CONFIG is expanded from... acinclude.m4:5189: AC_LIBTOOL_LANG_F77_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from... acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from... acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from... acinclude.m4:6633: AC_LIBTOOL_PROG_LD_SHLIBS is expanded from... acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from... acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level autoreconf-default: running: /usr/bin/autoconf-2.60 --force configure.ac:419: warning: AC_CACHE_VAL(ac_o3, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_faltivec, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_maltivec, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_mabialtivec, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_fno_schedule_insns, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_m_cpu_7450, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_m_tune_970, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_m_cpu_powerpc, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_funroll_all_loops, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_guessed_cflags, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_guessed_fflags, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:507: ACX_CHECK_F77_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:455: warning: AC_CACHE_VAL(acx_float_format, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:164: ACX_FLOAT_FORMAT is expanded from... configure.ac:455: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from... acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from... acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from... acinclude.m4:6633: AC_LIBTOOL_PROG_LD_SHLIBS is expanded from... acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from... acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from... acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from... acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from... acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from... acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:5190: _LT_AC_LANG_F77_CONFIG is expanded from... acinclude.m4:5189: AC_LIBTOOL_LANG_F77_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:5190: _LT_AC_LANG_F77_CONFIG is expanded from... acinclude.m4:5189: AC_LIBTOOL_LANG_F77_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from... acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from... acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from... acinclude.m4:6633: AC_LIBTOOL_PROG_LD_SHLIBS is expanded from... acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from... acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level autoreconf-default: running: /usr/bin/autoheader-2.60 --force configure.ac:419: warning: AC_CACHE_VAL(ac_o3, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_faltivec, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_maltivec, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_mabialtivec, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_fno_schedule_insns, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_m_cpu_7450, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_m_tune_970, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_m_cpu_powerpc, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_funroll_all_loops, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_guessed_cflags, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_guessed_fflags, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:507: ACX_CHECK_F77_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:455: warning: AC_CACHE_VAL(acx_float_format, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:164: ACX_FLOAT_FORMAT is expanded from... configure.ac:455: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from... acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from... acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from... acinclude.m4:6633: AC_LIBTOOL_PROG_LD_SHLIBS is expanded from... acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from... acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from... acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from... acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from... acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from... acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:5190: _LT_AC_LANG_F77_CONFIG is expanded from... acinclude.m4:5189: AC_LIBTOOL_LANG_F77_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:5190: _LT_AC_LANG_F77_CONFIG is expanded from... acinclude.m4:5189: AC_LIBTOOL_LANG_F77_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from... acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from... acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from... acinclude.m4:6633: AC_LIBTOOL_PROG_LD_SHLIBS is expanded from... acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from... acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level autoreconf-default: running: automake --add-missing --force-missing configure.ac:419: warning: AC_CACHE_VAL(ac_o3, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_faltivec, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_maltivec, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_mabialtivec, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_fno_schedule_insns, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_m_cpu_7450, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_m_tune_970, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_m_cpu_powerpc, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_funroll_all_loops, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_guessed_cflags, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:481: ACX_CHECK_CC_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:419: warning: AC_CACHE_VAL(ac_guessed_fflags, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:507: ACX_CHECK_F77_FLAGS is expanded from... acinclude.m4:633: ACX_COMPILER_MAXOPT is expanded from... configure.ac:419: the top level configure.ac:455: warning: AC_CACHE_VAL(acx_float_format, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:164: ACX_FLOAT_FORMAT is expanded from... configure.ac:455: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from... acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from... acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from... acinclude.m4:6633: AC_LIBTOOL_PROG_LD_SHLIBS is expanded from... acinclude.m4:3942: _LT_AC_LANG_C_CONFIG is expanded from... acinclude.m4:3941: AC_LIBTOOL_LANG_C_CONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from... acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from... acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from... acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:4023: _LT_AC_LANG_CXX_CONFIG is expanded from... acinclude.m4:4022: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:5190: _LT_AC_LANG_F77_CONFIG is expanded from... acinclude.m4:5189: AC_LIBTOOL_LANG_F77_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:5190: _LT_AC_LANG_F77_CONFIG is expanded from... acinclude.m4:5189: AC_LIBTOOL_LANG_F77_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1906: AC_LIBTOOL_COMPILER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from... acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached ../../lib/autoconf/general.m4:2033: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2054: AC_CACHE_CHECK is expanded from... acinclude.m4:1951: AC_LIBTOOL_LINKER_OPTION is expanded from... acinclude.m4:6106: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from... acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from... acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:462: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... acinclude.m4:1580: _LT_AC_SYS_LIBPATH_AIX is expanded from... acinclude.m4:6633: AC_LIBTOOL_PROG_LD_SHLIBS is expanded from... acinclude.m4:5292: _LT_AC_LANG_GCJ_CONFIG is expanded from... acinclude.m4:5291: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from... acinclude.m4:3078: _LT_AC_TAGCONFIG is expanded from... acinclude.m4:1371: AC_LIBTOOL_SETUP is expanded from... acinclude.m4:1351: _AC_PROG_LIBTOOL is expanded from... acinclude.m4:1316: AC_PROG_LIBTOOL is expanded from... configure.ac:462: the top level configure.ac:331: installing 'config/compile' configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:959: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') src/tools/Makefile.am:68: warning: 'LDFLAGS' is a user variable, you should not override it; src/tools/Makefile.am:68: use 'AM_LDFLAGS' instead autoreconf-default: Leaving directory `.' + mkdir single + pushd single ~/RPM/BUILD/gromacs-4.0.7/single ~/RPM/BUILD/gromacs-4.0.7 + buildThis float disable + ln -s ../configure . + CFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2' + export CFLAGS + CXXFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2' + export CXXFLAGS + FFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2' + export FFLAGS + FCFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2' + export FCFLAGS + '[' -n '' ']' ++ printf %s '-pipe -frecord-gcc-switches -Wall -g -O2' ++ sed -r 's/(^|[[:space:]]+)-[^m][^[:space:]]*//g' + ASFLAGS= + export ASFLAGS + export lt_cv_prog_cc_static_works=no + lt_cv_prog_cc_static_works=no + export lt_cv_deplibs_check_method=pass_all + lt_cv_deplibs_check_method=pass_all + readlink -e -- ./configure + xargs -ri dirname -- '{}' + xargs -ri find '{}' -type f '(' -name config.sub -or -name config.guess ')' -printf '%h/\n' + sort -u + xargs -rn1 install -pm755 -- /usr/share/gnu-config/config.sub /usr/share/gnu-config/config.guess + ./configure --build=x86_64-alt-linux --host=x86_64-alt-linux --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/lib --localstatedir=/var/lib --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --disable-dependency-tracking --disable-silent-rules --without-included-gettext --disable-rpath --enable-static=no --enable-shared --enable-float --enable-mpi --enable-prefetch-forces --enable-fortran --with-gnu-ld --with-fft=fftw3 --with-x --with-gsl --disable-mpi --program-suffix= --with-external-blas=-lopenblas configure: WARNING: unrecognized options: --without-included-gettext, --disable-rpath, --enable-prefetch-forces checking build system type... x86_64-alt-linux-gnu checking host system type... x86_64-alt-linux-gnu checking for a BSD-compatible install... /bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether UID '619' is supported by ustar format... yes checking whether GID '619' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar checking for x86_64-alt-linux-cc... no checking for x86_64-alt-linux-icc... no checking for x86_64-alt-linux-xlc... no checking for x86_64-alt-linux-gcc... x86_64-alt-linux-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether x86_64-alt-linux-gcc accepts -g... yes checking for x86_64-alt-linux-gcc option to accept ISO C89... none needed checking whether x86_64-alt-linux-gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of x86_64-alt-linux-gcc... none checking for x86_64-alt-linux-f77... no checking for x86_64-alt-linux-ifort... no checking for x86_64-alt-linux-xlf... no checking for x86_64-alt-linux-xlf77... no checking for x86_64-alt-linux-cf77... no checking for x86_64-alt-linux-fl32... no checking for x86_64-alt-linux-g77... no checking for x86_64-alt-linux-fort77... no checking for x86_64-alt-linux-f90... no checking for x86_64-alt-linux-xlf90... no checking for x86_64-alt-linux-pgf77... no checking for x86_64-alt-linux-cf77... no checking for x86_64-alt-linux-fort... no checking for x86_64-alt-linux-fort77... no checking for x86_64-alt-linux-pgf90... no checking for f77... f77 checking whether we are using the GNU Fortran 77 compiler... yes checking whether f77 accepts -g... yes checking dependency style of x86_64-alt-linux-gcc... none checking how to get verbose linking output from f77... -v checking for Fortran 77 libraries of f77... -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath checking for dummy main to link with Fortran 77 libraries... none checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore checking how to run the C preprocessor... x86_64-alt-linux-gcc -E checking whether x86_64-alt-linux-gcc accepts -O3... yes checking whether x86_64-alt-linux-gcc accepts -funroll-all-loops... yes ****************************************** * Using CFLAGS from environment variable * ****************************************** ****************************************** * Using FFLAGS from environment variable * ****************************************** checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking whether byte ordering is bigendian... no checking size of int... 4 checking size of long int... 8 checking size of long long int... 8 checking size of off_t... 8 checking that size_t can hold pointers... yes checking floating-point format... IEEE754 (little-endian byte and word order) checking whether ln -s works... yes checking whether make sets $(MAKE)... (cached) yes checking for a sed that does not truncate output... /bin/sed checking for ld used by x86_64-alt-linux-gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for /usr/bin/ld option to reload object files... -r checking for BSD-compatible nm... /usr/bin/nm -B checking how to recognise dependent libraries... (cached) pass_all checking dlfcn.h usability... yes checking dlfcn.h presence... yes checking for dlfcn.h... yes checking for x86_64-alt-linux-g++... x86_64-alt-linux-g++ checking whether we are using the GNU C++ compiler... yes checking whether x86_64-alt-linux-g++ accepts -g... yes checking dependency style of x86_64-alt-linux-g++... none checking how to run the C++ preprocessor... x86_64-alt-linux-g++ -E checking the maximum length of command line arguments... 32768 checking command to parse /usr/bin/nm -B output from x86_64-alt-linux-gcc object... ok checking for objdir... .libs checking for x86_64-alt-linux-ar... no checking for ar... ar checking for x86_64-alt-linux-ranlib... no checking for ranlib... ranlib checking for x86_64-alt-linux-strip... no checking for strip... strip checking if x86_64-alt-linux-gcc supports -fno-rtti -fno-exceptions... no checking for x86_64-alt-linux-gcc option to produce PIC... -fPIC checking if x86_64-alt-linux-gcc PIC flag -fPIC works... yes checking if x86_64-alt-linux-gcc static flag -static works... no checking if x86_64-alt-linux-gcc supports -c -o file.o... yes checking whether the x86_64-alt-linux-gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... cat: '/etc/ld.so.conf.d/*.conf': No such file or directory GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no configure: creating libtool appending configuration tag "CXX" to libtool checking for ld used by x86_64-alt-linux-g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the x86_64-alt-linux-g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for x86_64-alt-linux-g++ option to produce PIC... -fPIC checking if x86_64-alt-linux-g++ PIC flag -fPIC works... yes checking if x86_64-alt-linux-g++ static flag -static works... no checking if x86_64-alt-linux-g++ supports -c -o file.o... yes checking whether the x86_64-alt-linux-g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... cat: '/etc/ld.so.conf.d/*.conf': No such file or directory GNU/Linux ld.so checking how to hardcode library paths into programs... immediate appending configuration tag "F77" to libtool checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for f77 option to produce PIC... -fPIC checking if f77 PIC flag -fPIC works... yes checking if f77 static flag -static works... no checking if f77 supports -c -o file.o... yes checking whether the f77 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... cat: '/etc/ld.so.conf.d/*.conf': No such file or directory GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for _LARGEFILE_SOURCE value needed for large files... no checking for sqrt in -lm... yes checking for fftw3.h... yes checking for main in -lfftw3f... yes checking rpc/rpc.h usability... yes checking rpc/rpc.h presence... yes checking for rpc/rpc.h... yes checking for rpc/xdr.h... yes checking for xdr_float in -lnsl... no checking for working memcmp... yes checking return type of signal handlers... void checking for off_t... yes checking for vprintf... yes checking for _doprnt... no checking if malloc debugging is wanted... no checking for strcasecmp... yes checking for strdup... yes checking for bool... no checking size of int... (cached) 4 checking size of long int... (cached) 8 checking size of long long int... (cached) 8 checking size of off_t... (cached) 8 checking size of void*... 8 checking for X... libraries , headers checking for gethostbyname... yes checking for connect... yes checking for remove... yes checking for shmat... yes checking for IceConnectionNumber in -lICE... yes checking gsl/gsl_version.h usability... yes checking gsl/gsl_version.h presence... yes checking for gsl/gsl_version.h... yes checking for main in -lgslcblas... yes checking for main in -lgsl... yes checking libxml/parser.h usability... no checking libxml/parser.h presence... no checking for libxml/parser.h... no checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking for strings.h... (cached) yes checking for unistd.h... (cached) yes checking for unistd.h... (cached) yes checking for an ANSI C-conforming const... yes checking for size_t... yes checking whether struct tm is in sys/time.h or time.h... time.h checking for uid_t in sys/types.h... yes checking for inline... inline checking whether your compiler can handle assembly files (*.s)... yes checking whether as fully supports X86_64 SSE instructions... yes checking whether byte ordering is bigendian... (cached) no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating src/gmxlib/Makefile config.status: creating src/gmxlib/gmx_blas/Makefile config.status: creating src/gmxlib/gmx_lapack/Makefile config.status: creating src/gmxlib/nonbonded/Makefile config.status: creating src/gmxlib/nonbonded/nb_kernel/Makefile config.status: creating src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/Makefile config.status: creating src/gmxlib/nonbonded/nb_kernel_ia32_sse/Makefile config.status: creating src/gmxlib/nonbonded/nb_kernel_ia32_sse2/Makefile config.status: creating src/gmxlib/nonbonded/nb_kernel_x86_64_sse/Makefile config.status: creating src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/Makefile config.status: creating src/gmxlib/nonbonded/nb_kernel_ppc_altivec/Makefile config.status: creating src/gmxlib/nonbonded/nb_kernel_ia64_single/Makefile config.status: creating src/gmxlib/nonbonded/nb_kernel_ia64_double/Makefile config.status: creating src/gmxlib/nonbonded/nb_kernel_bluegene/Makefile config.status: creating include/Makefile config.status: creating include/types/Makefile config.status: creating src/mdlib/Makefile config.status: creating src/kernel/Makefile config.status: creating src/tools/Makefile config.status: creating src/ngmx/Makefile config.status: creating src/contrib/Makefile config.status: creating scripts/Makefile config.status: creating admin/Makefile config.status: creating share/Makefile config.status: creating share/tutor/Makefile config.status: creating share/tutor/gmxdemo/Makefile config.status: creating share/tutor/nmr1/Makefile config.status: creating share/tutor/nmr2/Makefile config.status: creating share/tutor/water/Makefile config.status: creating share/tutor/mixed/Makefile config.status: creating share/tutor/methanol/Makefile config.status: creating share/tutor/speptide/Makefile config.status: creating share/template/Makefile config.status: creating share/top/Makefile config.status: creating share/html/Makefile config.status: creating share/html/images/Makefile config.status: creating share/html/online/Makefile config.status: creating man/Makefile config.status: creating man/man1/Makefile config.status: creating src/config.h config.status: executing depfiles commands configure: WARNING: unrecognized options: --without-included-gettext, --disable-rpath, --enable-prefetch-forces + sed -i 's|^hardcode_libdir_flag_spec=.*|hardcode_libdir_flag_spec=""|g' libtool + sed -i 's|^runpath_var=LD_RUN_PATH|runpath_var=DIE_RPATH_DIE|g' libtool + make -j8 Making all in include Making all in . make[2]: Nothing to be done for 'all-am'. Making all in types make[2]: Nothing to be done for 'all'. Making all in src make all-recursive Making all in gmxlib Making all in nonbonded Making all in nb_kernel_x86_64_sse make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel100_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel100_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel100_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel100_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel103_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel103_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel103_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel103_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel030_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel030_x86_64_sse.s mkdir .libs x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel030_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel030_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel010_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel010_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel010_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel010_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel101_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel101_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel101_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel101_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel110_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel110_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel110_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel110_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel104_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel104_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel104_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel104_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel102_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel102_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel102_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel102_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel111_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel111_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel111_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel111_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel112_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel112_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel112_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel112_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel113_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel113_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel113_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel113_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel114_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel114_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel114_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel114_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel130_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel130_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel130_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel130_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel133_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel133_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel133_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel133_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel131_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel131_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel131_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel131_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel132_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel132_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel132_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel132_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel134_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel134_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel134_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel134_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel200_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel200_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel200_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel200_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel203_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel203_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel203_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel203_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel201_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel201_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel201_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel201_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel202_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel202_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel202_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel202_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel211_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel211_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel211_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel211_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel210_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel210_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel210_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel210_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel204_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel204_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel204_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel204_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel213_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel213_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel213_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel213_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel212_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel212_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel212_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel212_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel214_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel214_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel214_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel214_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel232_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel232_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel232_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel232_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel233_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel233_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel233_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel233_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel230_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel230_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel230_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel230_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel231_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel231_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel231_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel231_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel234_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel234_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel234_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel234_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel300_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel300_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel300_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel300_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel301_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel301_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel301_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel301_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel302_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel302_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel302_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel302_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel304_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel304_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel304_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel304_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel303_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel303_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel303_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel303_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel311_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel311_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel311_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel311_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel310_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel310_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel310_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel310_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel312_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel312_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel312_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel312_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel313_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel313_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel313_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel313_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel314_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel314_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel314_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel314_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel330_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel330_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel330_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel330_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel333_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel333_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel333_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel333_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel400_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel400_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel400_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel400_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel331_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel331_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel331_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel331_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel332_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel332_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel332_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel332_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel334_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel334_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel334_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel334_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel410_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel410_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel410_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel410_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel430_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel430_x86_64_sse.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel430_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel430_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel_x86_64_sse_test_asm.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel_x86_64_sse_test_asm.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel_x86_64_sse_test_asm.s -fPIC -DPIC -o .libs/nb_kernel_x86_64_sse_test_asm.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse -I../../../../src -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel_x86_64_sse.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse -I../../../../src -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel_x86_64_sse.c -fPIC -DPIC -o .libs/nb_kernel_x86_64_sse.o ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel_x86_64_sse.c: In function 'nb_kernel_x86_64_sse_test': ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel_x86_64_sse.c:209:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if(log) ^~ ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel_x86_64_sse.c:212:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' nb_kernel_x86_64_sse_present = TRUE; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o libnb_kernel_x86_64_sse.la nb_kernel010_x86_64_sse.lo nb_kernel030_x86_64_sse.lo nb_kernel100_x86_64_sse.lo nb_kernel101_x86_64_sse.lo nb_kernel102_x86_64_sse.lo nb_kernel103_x86_64_sse.lo nb_kernel104_x86_64_sse.lo nb_kernel110_x86_64_sse.lo nb_kernel111_x86_64_sse.lo nb_kernel112_x86_64_sse.lo nb_kernel113_x86_64_sse.lo nb_kernel114_x86_64_sse.lo nb_kernel130_x86_64_sse.lo nb_kernel131_x86_64_sse.lo nb_kernel132_x86_64_sse.lo nb_kernel133_x86_64_sse.lo nb_kernel134_x86_64_sse.lo nb_kernel200_x86_64_sse.lo nb_kernel201_x86_64_sse.lo nb_kernel202_x86_64_sse.lo nb_kernel203_x86_64_sse.lo nb_kernel204_x86_64_sse.lo nb_kernel210_x86_64_sse.lo nb_kernel211_x86_64_sse.lo nb_kernel212_x86_64_sse.lo nb_kernel213_x86_64_sse.lo nb_kernel214_x86_64_sse.lo nb_kernel230_x86_64_sse.lo nb_kernel231_x86_64_sse.lo nb_kernel232_x86_64_sse.lo nb_kernel233_x86_64_sse.lo nb_kernel234_x86_64_sse.lo nb_kernel300_x86_64_sse.lo nb_kernel301_x86_64_sse.lo nb_kernel302_x86_64_sse.lo nb_kernel303_x86_64_sse.lo nb_kernel304_x86_64_sse.lo nb_kernel310_x86_64_sse.lo nb_kernel311_x86_64_sse.lo nb_kernel312_x86_64_sse.lo nb_kernel313_x86_64_sse.lo nb_kernel314_x86_64_sse.lo nb_kernel330_x86_64_sse.lo nb_kernel331_x86_64_sse.lo nb_kernel332_x86_64_sse.lo nb_kernel333_x86_64_sse.lo nb_kernel334_x86_64_sse.lo nb_kernel400_x86_64_sse.lo nb_kernel410_x86_64_sse.lo nb_kernel430_x86_64_sse.lo nb_kernel_x86_64_sse_test_asm.lo nb_kernel_x86_64_sse.lo -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath ar cru .libs/libnb_kernel_x86_64_sse.a .libs/nb_kernel010_x86_64_sse.o .libs/nb_kernel030_x86_64_sse.o .libs/nb_kernel100_x86_64_sse.o .libs/nb_kernel101_x86_64_sse.o .libs/nb_kernel102_x86_64_sse.o .libs/nb_kernel103_x86_64_sse.o .libs/nb_kernel104_x86_64_sse.o .libs/nb_kernel110_x86_64_sse.o .libs/nb_kernel111_x86_64_sse.o .libs/nb_kernel112_x86_64_sse.o .libs/nb_kernel113_x86_64_sse.o .libs/nb_kernel114_x86_64_sse.o .libs/nb_kernel130_x86_64_sse.o .libs/nb_kernel131_x86_64_sse.o .libs/nb_kernel132_x86_64_sse.o .libs/nb_kernel133_x86_64_sse.o .libs/nb_kernel134_x86_64_sse.o .libs/nb_kernel200_x86_64_sse.o .libs/nb_kernel201_x86_64_sse.o .libs/nb_kernel202_x86_64_sse.o .libs/nb_kernel203_x86_64_sse.o .libs/nb_kernel204_x86_64_sse.o .libs/nb_kernel210_x86_64_sse.o .libs/nb_kernel211_x86_64_sse.o .libs/nb_kernel212_x86_64_sse.o .libs/nb_kernel213_x86_64_sse.o .libs/nb_kernel214_x86_64_sse.o .libs/nb_kernel230_x86_64_sse.o .libs/nb_kernel231_x86_64_sse.o .libs/nb_kernel232_x86_64_sse.o .libs/nb_kernel233_x86_64_sse.o .libs/nb_kernel234_x86_64_sse.o .libs/nb_kernel300_x86_64_sse.o .libs/nb_kernel301_x86_64_sse.o .libs/nb_kernel302_x86_64_sse.o .libs/nb_kernel303_x86_64_sse.o .libs/nb_kernel304_x86_64_sse.o .libs/nb_kernel310_x86_64_sse.o .libs/nb_kernel311_x86_64_sse.o .libs/nb_kernel312_x86_64_sse.o .libs/nb_kernel313_x86_64_sse.o .libs/nb_kernel314_x86_64_sse.o .libs/nb_kernel330_x86_64_sse.o .libs/nb_kernel331_x86_64_sse.o .libs/nb_kernel332_x86_64_sse.o .libs/nb_kernel333_x86_64_sse.o .libs/nb_kernel334_x86_64_sse.o .libs/nb_kernel400_x86_64_sse.o .libs/nb_kernel410_x86_64_sse.o .libs/nb_kernel430_x86_64_sse.o .libs/nb_kernel_x86_64_sse_test_asm.o .libs/nb_kernel_x86_64_sse.o ranlib .libs/libnb_kernel_x86_64_sse.a creating libnb_kernel_x86_64_sse.la (cd .libs && rm -f libnb_kernel_x86_64_sse.la && ln -s ../libnb_kernel_x86_64_sse.la libnb_kernel_x86_64_sse.la) make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' Making all in nb_kernel make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_common.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_common.c make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb.c make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_declarations.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_declarations.c make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_metacode.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_metacode.c make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_outerloop.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_outerloop.c make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_innerloop.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_innerloop.c make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_interactions.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_interactions.c make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -o mknb mknb.o mknb_metacode.o mknb_common.o mknb_declarations.o mknb_outerloop.o mknb_innerloop.o mknb_interactions.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' rm -f kernel-stamp ./mknb -software_invsqrt -fortran >>> Gromacs nonbonded kernel generator (-h for help) >>> Generating single precision functions in Fortran77. >>> Using Gromacs software version of 1/sqrt(x). Progress: 1% Progress: 2% Progress: 4% Progress: 5% Progress: 7% Progress: 8% Progress: 10% Progress: 11% Progress: 13% Progress: 14% Progress: 16% Progress: 17% Progress: 19% Progress: 20% Progress: 22% Progress: 23% Progress: 25% Progress: 26% Progress: 28% Progress: 29% Progress: 31% Progress: 32% Progress: 34% Progress: 35% Progress: 37% Progress: 38% Progress: 40% Progress: 41% Progress: 43% Progress: 44% Progress: 46% Progress: 47% Progress: 49% Progress: 50% Progress: 52% Progress: 53% Progress: 55% Progress: 56% Progress: 58% Progress: 59% Progress: 61% Progress: 62% Progress: 64% Progress: 65% Progress: 67% Progress: 68% Progress: 70% Progress: 71% Progress: 73% Progress: 74% Progress: 76% Progress: 77% Progress: 79% Progress: 80% Progress: 82% Progress: 83% Progress: 85% Progress: 86% Progress: 88% Progress: 89% Progress: 91% Progress: 92% Progress: 94% Progress: 95% Progress: 97% Progress: 98% Progress: 100% make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make all-am make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel.lo ../../../../../src/gmxlib/nonbonded/nb_kernel/nb_kernel.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel/nb_kernel.c -fPIC -DPIC -o .libs/nb_kernel.o make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel010_f.lo nb_kernel010_f.f mkdir .libs f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel010_f.f -fPIC -o .libs/nb_kernel010_f.o nb_kernel010_f.f:36:38: & charge, 1 Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:37:37: & facel, 1 Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:40:34: & Vc, 1 Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:169:38: & charge, 1 Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:185:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:172:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:181:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:170:37: & facel, 1 Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:168:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:165:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:183:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:182:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:180:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:171:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:186:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:184:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:178:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:173:34: & Vc, 1 Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:179:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:189:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel100_f.lo nb_kernel100_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel100_f.f -fPIC -o .libs/nb_kernel100_f.o nb_kernel100_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:202:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:189:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:198:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:185:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:182:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:200:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:199:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:197:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:188:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:203:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:201:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:192:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:195:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:191:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:193:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:196:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:194:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:206:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel020_f.lo nb_kernel020_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel020_f.f -fPIC -o .libs/nb_kernel020_f.o nb_kernel020_f.f:36:38: & charge, 1 Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:37:37: & facel, 1 Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:40:34: & Vc, 1 Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:196:38: & charge, 1 Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:212:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:199:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:208:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:197:37: & facel, 1 Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:195:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:192:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:210:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:209:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:207:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:198:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:213:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:211:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:205:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:200:34: & Vc, 1 Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:206:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:216:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel030_f.lo nb_kernel030_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel030_f.f -fPIC -o .libs/nb_kernel030_f.o nb_kernel030_f.f:144:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel030_f.f:320:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel030_f.f:36:38: & charge, 1 Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:37:37: & facel, 1 Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:40:34: & Vc, 1 Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:218:38: & charge, 1 Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:234:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:221:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:230:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:219:37: & facel, 1 Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:217:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:214:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:232:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:231:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:229:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:220:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:235:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:233:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:222:34: & Vc, 1 Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:238:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel101_f.lo nb_kernel101_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel101_f.f -fPIC -o .libs/nb_kernel101_f.o nb_kernel101_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:278:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:265:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:274:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:261:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:258:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:276:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:275:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:273:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:264:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:279:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:277:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:268:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:271:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:267:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:269:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:272:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:270:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:282:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel103_f.lo nb_kernel103_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel103_f.f -fPIC -o .libs/nb_kernel103_f.o nb_kernel103_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:278:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:265:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:274:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:261:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:258:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:276:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:275:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:273:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:264:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:279:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:277:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:268:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:271:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:267:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:269:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:272:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:270:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:282:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel102_f.lo nb_kernel102_f.f mkdir .libs mkdir: cannot create directory '.libs': File exists f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel102_f.f -fPIC -o .libs/nb_kernel102_f.o nb_kernel102_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:444:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:431:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:440:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:427:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:424:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:442:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:441:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:439:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:430:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:445:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:443:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:434:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:437:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:433:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:435:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:438:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:436:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:448:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel110_f.lo nb_kernel110_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel110_f.f -fPIC -o .libs/nb_kernel110_f.o nb_kernel110_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:218:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:205:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:214:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:201:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:198:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:216:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:215:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:213:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:204:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:219:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:217:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:211:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:212:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:222:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel111_f.lo nb_kernel111_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel111_f.f -fPIC -o .libs/nb_kernel111_f.o nb_kernel111_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:294:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:281:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:290:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:277:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:274:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:292:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:291:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:289:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:280:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:295:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:293:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:287:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:288:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:298:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel120_f.lo nb_kernel120_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel120_f.f -fPIC -o .libs/nb_kernel120_f.o nb_kernel120_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:220:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:207:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:216:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:203:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:200:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:218:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:217:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:215:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:206:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:221:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:219:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:213:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:214:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:224:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel113_f.lo nb_kernel113_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel113_f.f -fPIC -o .libs/nb_kernel113_f.o nb_kernel113_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:320:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:307:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:316:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:303:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:300:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:318:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:317:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:315:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:306:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:321:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:319:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:313:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:314:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:324:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel104_f.lo nb_kernel104_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel104_f.f -fPIC -o .libs/nb_kernel104_f.o nb_kernel104_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:444:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:431:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:440:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:427:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:424:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:442:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:441:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:439:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:430:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:445:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:443:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:434:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:437:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:433:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:435:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:438:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:436:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:448:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel112_f.lo nb_kernel112_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel112_f.f -fPIC -o .libs/nb_kernel112_f.o nb_kernel112_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:458:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:445:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:454:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:441:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:438:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:456:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:455:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:453:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:444:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:459:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:457:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:451:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:452:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:462:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel121_f.lo nb_kernel121_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel121_f.f -fPIC -o .libs/nb_kernel121_f.o nb_kernel121_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:296:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:283:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:292:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:279:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:276:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:294:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:293:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:291:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:282:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:297:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:295:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:289:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:290:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:300:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel114_f.lo nb_kernel114_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel114_f.f -fPIC -o .libs/nb_kernel114_f.o nb_kernel114_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:488:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:475:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:484:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:471:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:468:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:486:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:485:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:483:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:474:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:489:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:487:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:481:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:482:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:492:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel130_f.lo nb_kernel130_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel130_f.f -fPIC -o .libs/nb_kernel130_f.o nb_kernel130_f.f:153:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel130_f.f:338:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel130_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:245:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:232:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:241:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:228:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:225:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:243:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:242:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:240:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:231:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:246:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:244:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:249:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel123_f.lo nb_kernel123_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel123_f.f -fPIC -o .libs/nb_kernel123_f.o nb_kernel123_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:329:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:316:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:325:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:312:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:309:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:327:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:326:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:324:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:315:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:330:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:328:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:322:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:323:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:333:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel122_f.lo nb_kernel122_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel122_f.f -fPIC -o .libs/nb_kernel122_f.o nb_kernel122_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:460:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:447:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:456:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:443:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:440:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:458:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:457:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:455:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:446:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:461:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:459:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:453:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:454:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:464:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel131_f.lo nb_kernel131_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel131_f.f -fPIC -o .libs/nb_kernel131_f.o nb_kernel131_f.f:196:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel131_f.f:451:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel131_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:321:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:308:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:317:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:304:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:301:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:319:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:318:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:316:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:307:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:322:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:320:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:325:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel124_f.lo nb_kernel124_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel124_f.f -fPIC -o .libs/nb_kernel124_f.o nb_kernel124_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:497:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:484:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:493:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:480:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:477:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:495:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:494:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:492:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:483:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:498:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:496:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:490:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:491:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:501:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel133_f.lo nb_kernel133_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel133_f.f -fPIC -o .libs/nb_kernel133_f.o nb_kernel133_f.f:210:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel133_f.f:494:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel133_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:352:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:339:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:348:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:335:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:332:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:350:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:349:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:347:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:338:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:353:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:351:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:356:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel200_f.lo nb_kernel200_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel200_f.f -fPIC -o .libs/nb_kernel200_f.o nb_kernel200_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:204:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:200:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:187:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:184:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:202:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:201:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:199:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:205:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:203:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:194:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:197:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:193:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:195:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:198:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:196:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:208:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel201_f.lo nb_kernel201_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel201_f.f -fPIC -o .libs/nb_kernel201_f.o nb_kernel201_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:282:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:278:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:265:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:262:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:280:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:279:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:277:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:283:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:281:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:272:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:275:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:271:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:273:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:276:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:274:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:286:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel132_f.lo nb_kernel132_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel132_f.f -fPIC -o .libs/nb_kernel132_f.o nb_kernel132_f.f:275:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel132_f.f:694:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel132_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:485:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:472:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:481:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:468:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:465:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:483:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:482:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:480:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:471:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:486:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:484:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:489:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel203_f.lo nb_kernel203_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel203_f.f -fPIC -o .libs/nb_kernel203_f.o nb_kernel203_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:282:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:278:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:265:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:262:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:280:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:279:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:277:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:283:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:281:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:272:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:275:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:271:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:273:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:276:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:274:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:286:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel134_f.lo nb_kernel134_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel134_f.f -fPIC -o .libs/nb_kernel134_f.o nb_kernel134_f.f:294:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel134_f.f:746:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel134_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:520:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:507:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:516:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:503:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:500:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:518:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:517:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:515:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:506:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:521:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:519:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:524:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel210_f.lo nb_kernel210_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel210_f.f -fPIC -o .libs/nb_kernel210_f.o nb_kernel210_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:221:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:217:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:204:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:201:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:219:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:218:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:216:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:222:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:220:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:214:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:215:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:225:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel202_f.lo nb_kernel202_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel202_f.f -fPIC -o .libs/nb_kernel202_f.o nb_kernel202_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:454:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:450:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:437:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:434:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:452:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:451:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:449:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:455:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:453:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:444:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:447:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:443:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:445:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:448:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:446:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:458:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel211_f.lo nb_kernel211_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel211_f.f -fPIC -o .libs/nb_kernel211_f.o nb_kernel211_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:299:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:295:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:282:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:279:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:297:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:296:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:294:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:300:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:298:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:292:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:293:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:303:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel204_f.lo nb_kernel204_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel204_f.f -fPIC -o .libs/nb_kernel204_f.o nb_kernel204_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:454:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:450:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:437:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:434:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:452:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:451:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:449:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:455:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:453:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:444:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:447:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:443:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:445:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:448:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:446:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:458:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel213_f.lo nb_kernel213_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel213_f.f -fPIC -o .libs/nb_kernel213_f.o nb_kernel213_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:324:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:320:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:307:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:304:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:322:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:321:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:319:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:325:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:323:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:317:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:318:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:328:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel220_f.lo nb_kernel220_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel220_f.f -fPIC -o .libs/nb_kernel220_f.o nb_kernel220_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:223:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:219:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:206:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:203:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:221:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:220:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:218:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:224:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:222:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:216:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:217:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:227:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel221_f.lo nb_kernel221_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel221_f.f -fPIC -o .libs/nb_kernel221_f.o nb_kernel221_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:301:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:297:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:284:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:281:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:299:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:298:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:296:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:302:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:300:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:294:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:295:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:305:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel212_f.lo nb_kernel212_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel212_f.f -fPIC -o .libs/nb_kernel212_f.o nb_kernel212_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:469:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:465:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:452:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:449:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:467:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:466:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:464:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:470:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:468:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:462:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:463:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:473:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel223_f.lo nb_kernel223_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel223_f.f -fPIC -o .libs/nb_kernel223_f.o nb_kernel223_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:333:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:329:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:316:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:313:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:331:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:330:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:328:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:334:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:332:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:326:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:327:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:337:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel214_f.lo nb_kernel214_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel214_f.f -fPIC -o .libs/nb_kernel214_f.o nb_kernel214_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:498:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:494:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:481:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:478:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:496:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:495:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:493:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:499:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:497:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:491:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:492:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:502:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel230_f.lo nb_kernel230_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel230_f.f -fPIC -o .libs/nb_kernel230_f.o nb_kernel230_f.f:155:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel230_f.f:342:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel230_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:247:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:243:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:230:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:227:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:245:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:244:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:242:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:248:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:246:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:251:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel222_f.lo nb_kernel222_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel222_f.f -fPIC -o .libs/nb_kernel222_f.o nb_kernel222_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:471:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:467:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:454:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:451:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:469:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:468:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:466:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:472:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:470:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:464:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:465:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:475:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel231_f.lo nb_kernel231_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel231_f.f -fPIC -o .libs/nb_kernel231_f.o nb_kernel231_f.f:198:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel231_f.f:457:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel231_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:325:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:321:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:308:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:305:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:323:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:322:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:320:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:326:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:324:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:329:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel300_f.lo nb_kernel300_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel300_f.f -fPIC -o .libs/nb_kernel300_f.o nb_kernel300_f.f:139:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel300_f.f:300:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel300_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:219:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:206:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:215:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:202:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:199:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:217:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:216:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:214:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:205:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:220:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:218:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:209:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:208:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:210:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:211:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:223:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel233_f.lo nb_kernel233_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel233_f.f -fPIC -o .libs/nb_kernel233_f.o nb_kernel233_f.f:211:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel233_f.f:499:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel233_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:356:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:352:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:339:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:336:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:354:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:353:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:351:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:357:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:355:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:360:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel224_f.lo nb_kernel224_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel224_f.f -fPIC -o .libs/nb_kernel224_f.o nb_kernel224_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:507:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:503:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:490:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:487:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:505:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:504:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:502:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:508:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:506:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:500:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:501:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:511:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel301_f.lo nb_kernel301_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel301_f.f -fPIC -o .libs/nb_kernel301_f.o nb_kernel301_f.f:182:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel301_f.f:209:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel301_f.f:235:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel301_f.f:439:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel301_f.f:454:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel301_f.f:468:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel301_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:321:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:308:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:317:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:304:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:301:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:319:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:318:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:316:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:307:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:322:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:320:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:311:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:310:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:312:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:313:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:325:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel232_f.lo nb_kernel232_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel232_f.f -fPIC -o .libs/nb_kernel232_f.o nb_kernel232_f.f:277:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel232_f.f:706:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel232_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:495:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:491:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:478:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:475:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:493:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:492:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:490:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:496:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:494:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:499:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel303_f.lo nb_kernel303_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel303_f.f -fPIC -o .libs/nb_kernel303_f.o nb_kernel303_f.f:182:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel303_f.f:208:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel303_f.f:235:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel303_f.f:439:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel303_f.f:453:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel303_f.f:468:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel303_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:321:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:308:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:317:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:304:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:301:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:319:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:318:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:316:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:307:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:322:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:320:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:311:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:310:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:312:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:313:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:325:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel310_f.lo nb_kernel310_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel310_f.f -fPIC -o .libs/nb_kernel310_f.o nb_kernel310_f.f:152:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel310_f.f:332:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel310_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:238:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:225:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:234:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:221:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:218:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:236:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:235:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:233:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:224:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:239:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:237:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:242:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel234_f.lo nb_kernel234_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel234_f.f -fPIC -o .libs/nb_kernel234_f.o nb_kernel234_f.f:295:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel234_f.f:757:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel234_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:530:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:526:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:513:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:510:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:528:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:527:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:525:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:531:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:529:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:534:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel311_f.lo nb_kernel311_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel311_f.f -fPIC -o .libs/nb_kernel311_f.o nb_kernel311_f.f:195:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel311_f.f:227:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel311_f.f:253:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel311_f.f:471:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel311_f.f:490:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel311_f.f:504:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel311_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:340:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:327:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:336:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:323:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:320:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:338:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:337:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:335:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:326:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:341:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:339:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:344:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel302_f.lo nb_kernel302_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel302_f.f -fPIC -o .libs/nb_kernel302_f.o nb_kernel302_f.f:263:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:290:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:317:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:344:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:371:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:398:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:425:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:452:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:479:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:764:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:779:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:794:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:809:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:824:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:839:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:854:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:869:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:884:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:565:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:552:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:561:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:548:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:545:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:563:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:562:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:560:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:551:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:566:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:564:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:555:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:554:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:556:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:557:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:569:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel313_f.lo nb_kernel313_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel313_f.f -fPIC -o .libs/nb_kernel313_f.o nb_kernel313_f.f:221:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel313_f.f:247:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel313_f.f:274:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel313_f.f:508:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel313_f.f:522:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel313_f.f:537:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel313_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:364:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:351:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:360:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:347:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:344:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:362:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:361:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:359:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:350:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:365:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:363:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:368:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel304_f.lo nb_kernel304_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel304_f.f -fPIC -o .libs/nb_kernel304_f.o nb_kernel304_f.f:263:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:290:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:317:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:344:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:371:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:398:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:425:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:452:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:479:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:764:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:779:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:794:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:809:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:824:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:839:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:854:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:869:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:884:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:565:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:552:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:561:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:548:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:545:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:563:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:562:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:560:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:551:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:566:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:564:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:555:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:554:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:556:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:557:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:569:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel320_f.lo nb_kernel320_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel320_f.f -fPIC -o .libs/nb_kernel320_f.o nb_kernel320_f.f:153:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel320_f.f:335:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel320_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:240:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:227:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:236:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:223:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:220:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:238:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:237:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:235:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:226:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:241:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:239:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:244:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel321_f.lo nb_kernel321_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel321_f.f -fPIC -o .libs/nb_kernel321_f.o nb_kernel321_f.f:196:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel321_f.f:229:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel321_f.f:255:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel321_f.f:474:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel321_f.f:494:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel321_f.f:508:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel321_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:342:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:329:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:338:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:325:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:322:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:340:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:339:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:337:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:328:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:343:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:341:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:346:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel312_f.lo nb_kernel312_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel312_f.f -fPIC -o .libs/nb_kernel312_f.o nb_kernel312_f.f:274:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:306:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:333:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:360:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:387:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:414:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:441:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:468:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:495:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:792:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:811:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:826:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:841:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:856:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:871:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:886:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:901:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:916:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:582:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:569:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:578:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:565:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:562:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:580:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:579:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:577:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:568:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:583:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:581:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:586:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel323_f.lo nb_kernel323_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel323_f.f -fPIC -o .libs/nb_kernel323_f.o nb_kernel323_f.f:230:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel323_f.f:256:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel323_f.f:283:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel323_f.f:526:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel323_f.f:540:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel323_f.f:555:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel323_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:373:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:360:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:369:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:356:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:353:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:371:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:370:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:368:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:359:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:374:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:372:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:377:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel330_f.lo nb_kernel330_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel330_f.f -fPIC -o .libs/nb_kernel330_f.o nb_kernel330_f.f:150:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel330_f.f:343:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel330_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:252:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:239:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:248:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:235:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:232:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:250:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:249:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:247:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:238:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:253:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:251:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:256:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel314_f.lo nb_kernel314_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel314_f.f -fPIC -o .libs/nb_kernel314_f.o nb_kernel314_f.f:304:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:331:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:358:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:385:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:412:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:439:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:466:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:493:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:520:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:837:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:852:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:867:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:882:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:897:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:912:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:927:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:942:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:957:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:610:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:597:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:606:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:593:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:590:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:608:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:607:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:605:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:596:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:611:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:609:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:614:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel331_f.lo nb_kernel331_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel331_f.f -fPIC -o .libs/nb_kernel331_f.o nb_kernel331_f.f:193:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel331_f.f:241:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel331_f.f:267:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel331_f.f:482:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel331_f.f:514:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel331_f.f:528:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel331_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:354:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:341:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:350:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:337:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:334:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:352:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:351:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:349:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:340:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:355:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:353:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:358:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel322_f.lo nb_kernel322_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel322_f.f -fPIC -o .libs/nb_kernel322_f.o nb_kernel322_f.f:275:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:308:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:335:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:362:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:389:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:416:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:443:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:470:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:497:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:795:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:815:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:830:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:845:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:860:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:875:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:890:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:905:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:920:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:584:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:571:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:580:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:567:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:564:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:582:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:581:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:579:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:570:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:585:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:583:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:588:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel400_f.lo nb_kernel400_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel400_f.f -fPIC -o .libs/nb_kernel400_f.o nb_kernel400_f.f:147:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel400_f.f:317:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel400_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:231:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:218:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:227:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:214:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:211:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:217:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:232:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:230:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:221:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:224:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:220:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:222:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:225:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:223:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:235:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel333_f.lo nb_kernel333_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel333_f.f -fPIC -o .libs/nb_kernel333_f.o nb_kernel333_f.f:210:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel333_f.f:249:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel333_f.f:275:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel333_f.f:302:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel333_f.f:534:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel333_f.f:559:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel333_f.f:573:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel333_f.f:588:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel333_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:392:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:379:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:388:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:375:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:372:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:390:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:389:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:387:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:378:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:393:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:391:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:396:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel410_f.lo nb_kernel410_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel410_f.f -fPIC -o .libs/nb_kernel410_f.o nb_kernel410_f.f:160:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel410_f.f:349:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel410_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:250:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:237:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:246:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:233:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:230:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:236:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:251:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:249:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:243:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:244:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:254:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel324_f.lo nb_kernel324_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel324_f.f -fPIC -o .libs/nb_kernel324_f.o nb_kernel324_f.f:313:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:340:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:367:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:394:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:421:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:448:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:475:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:502:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:529:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:855:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:870:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:885:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:900:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:915:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:930:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:945:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:960:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:975:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:619:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:606:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:615:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:602:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:599:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:617:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:616:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:614:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:605:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:620:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:618:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:623:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel420_f.lo nb_kernel420_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel420_f.f -fPIC -o .libs/nb_kernel420_f.o nb_kernel420_f.f:161:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel420_f.f:352:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel420_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:252:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:239:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:248:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:235:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:232:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:238:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:253:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:251:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:245:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:246:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:256:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel_f77sync.lo ../../../../../src/gmxlib/nonbonded/nb_kernel/nb_kernel_f77sync.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel/nb_kernel_f77sync.c -fPIC -DPIC -o .libs/nb_kernel_f77sync.o make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel332_f.lo nb_kernel332_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel332_f.f -fPIC -o .libs/nb_kernel332_f.o nb_kernel332_f.f:272:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:320:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:347:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:374:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:401:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:428:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:455:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:482:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:509:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:803:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:835:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:850:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:865:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:880:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:895:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:910:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:925:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:940:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:596:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:583:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:592:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:579:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:576:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:594:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:593:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:591:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:582:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:597:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:595:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:600:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel430_f.lo nb_kernel430_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel430_f.f -fPIC -o .libs/nb_kernel430_f.o nb_kernel430_f.f:158:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel430_f.f:177:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel430_f.f:365:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel430_f.f:379:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel430_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel430_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel430_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel430_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel430_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel430_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel430_f.f:269:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel430_f.f:256:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel430_f.f:265:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel430_f.f:252:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel430_f.f:249:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel430_f.f:255:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel430_f.f:270:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel430_f.f:268:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel430_f.f:273:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel334_f.lo nb_kernel334_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel334_f.f -fPIC -o .libs/nb_kernel334_f.o nb_kernel334_f.f:294:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:332:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:359:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:386:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:413:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:440:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:467:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:494:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:521:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:548:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:864:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:888:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:903:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:918:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:933:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:948:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:963:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:978:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:993:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:1008:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:638:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:625:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:634:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:621:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:618:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:636:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:635:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:633:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:624:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:639:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:637:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:642:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o libnb_kernel.la nb_kernel.lo nb_kernel010_f.lo nb_kernel020_f.lo nb_kernel030_f.lo nb_kernel100_f.lo nb_kernel101_f.lo nb_kernel102_f.lo nb_kernel103_f.lo nb_kernel104_f.lo nb_kernel110_f.lo nb_kernel111_f.lo nb_kernel112_f.lo nb_kernel113_f.lo nb_kernel114_f.lo nb_kernel120_f.lo nb_kernel121_f.lo nb_kernel122_f.lo nb_kernel123_f.lo nb_kernel124_f.lo nb_kernel130_f.lo nb_kernel131_f.lo nb_kernel132_f.lo nb_kernel133_f.lo nb_kernel134_f.lo nb_kernel200_f.lo nb_kernel201_f.lo nb_kernel202_f.lo nb_kernel203_f.lo nb_kernel204_f.lo nb_kernel210_f.lo nb_kernel211_f.lo nb_kernel212_f.lo nb_kernel213_f.lo nb_kernel214_f.lo nb_kernel220_f.lo nb_kernel221_f.lo nb_kernel222_f.lo nb_kernel223_f.lo nb_kernel224_f.lo nb_kernel230_f.lo nb_kernel231_f.lo nb_kernel232_f.lo nb_kernel233_f.lo nb_kernel234_f.lo nb_kernel300_f.lo nb_kernel301_f.lo nb_kernel302_f.lo nb_kernel303_f.lo nb_kernel304_f.lo nb_kernel310_f.lo nb_kernel311_f.lo nb_kernel312_f.lo nb_kernel313_f.lo nb_kernel314_f.lo nb_kernel320_f.lo nb_kernel321_f.lo nb_kernel322_f.lo nb_kernel323_f.lo nb_kernel324_f.lo nb_kernel330_f.lo nb_kernel331_f.lo nb_kernel332_f.lo nb_kernel333_f.lo nb_kernel334_f.lo nb_kernel400_f.lo nb_kernel410_f.lo nb_kernel420_f.lo nb_kernel430_f.lo nb_kernel_f77sync.lo -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath ar cru .libs/libnb_kernel.a .libs/nb_kernel.o .libs/nb_kernel010_f.o .libs/nb_kernel020_f.o .libs/nb_kernel030_f.o .libs/nb_kernel100_f.o .libs/nb_kernel101_f.o .libs/nb_kernel102_f.o .libs/nb_kernel103_f.o .libs/nb_kernel104_f.o .libs/nb_kernel110_f.o .libs/nb_kernel111_f.o .libs/nb_kernel112_f.o .libs/nb_kernel113_f.o .libs/nb_kernel114_f.o .libs/nb_kernel120_f.o .libs/nb_kernel121_f.o .libs/nb_kernel122_f.o .libs/nb_kernel123_f.o .libs/nb_kernel124_f.o .libs/nb_kernel130_f.o .libs/nb_kernel131_f.o .libs/nb_kernel132_f.o .libs/nb_kernel133_f.o .libs/nb_kernel134_f.o .libs/nb_kernel200_f.o .libs/nb_kernel201_f.o .libs/nb_kernel202_f.o .libs/nb_kernel203_f.o .libs/nb_kernel204_f.o .libs/nb_kernel210_f.o .libs/nb_kernel211_f.o .libs/nb_kernel212_f.o .libs/nb_kernel213_f.o .libs/nb_kernel214_f.o .libs/nb_kernel220_f.o .libs/nb_kernel221_f.o .libs/nb_kernel222_f.o .libs/nb_kernel223_f.o .libs/nb_kernel224_f.o .libs/nb_kernel230_f.o .libs/nb_kernel231_f.o .libs/nb_kernel232_f.o .libs/nb_kernel233_f.o .libs/nb_kernel234_f.o .libs/nb_kernel300_f.o .libs/nb_kernel301_f.o .libs/nb_kernel302_f.o .libs/nb_kernel303_f.o .libs/nb_kernel304_f.o .libs/nb_kernel310_f.o .libs/nb_kernel311_f.o .libs/nb_kernel312_f.o .libs/nb_kernel313_f.o .libs/nb_kernel314_f.o .libs/nb_kernel320_f.o .libs/nb_kernel321_f.o .libs/nb_kernel322_f.o .libs/nb_kernel323_f.o .libs/nb_kernel324_f.o .libs/nb_kernel330_f.o .libs/nb_kernel331_f.o .libs/nb_kernel332_f.o .libs/nb_kernel333_f.o .libs/nb_kernel334_f.o .libs/nb_kernel400_f.o .libs/nb_kernel410_f.o .libs/nb_kernel420_f.o .libs/nb_kernel430_f.o .libs/nb_kernel_f77sync.o ranlib .libs/libnb_kernel.a creating libnb_kernel.la (cd .libs && rm -f libnb_kernel.la && ln -s ../libnb_kernel.la libnb_kernel.la) make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_generic.lo ../../../../src/gmxlib/nonbonded/nb_generic.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/nonbonded/nb_generic.c -fPIC -DPIC -o .libs/nb_generic.o ../../../../src/gmxlib/nonbonded/nb_generic.c: In function 'gmx_nb_generic_kernel': ../../../../src/gmxlib/nonbonded/nb_generic.c:82:16: warning: unused variable 'shift' [-Wunused-variable] int * shift; ^~~~~ ../../../../src/gmxlib/nonbonded/nb_generic.c:62:25: warning: unused variable 'gbtabscale' [-Wunused-variable] real facel,gbtabscale; ^~~~~~~~~~ ../../../../src/gmxlib/nonbonded/nb_generic.c:61:19: warning: unused variable 'nri' [-Wunused-variable] int nri,ntype,table_nelements,icoul,ivdw; ^~~ In file included from ../../../../src/gmxlib/nonbonded/nb_generic.c:43: At top level: ../../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../../include/vec.h:121, from ../../../../src/gmxlib/nonbonded/nb_generic.c:43: ../../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_free_energy.lo ../../../../src/gmxlib/nonbonded/nb_free_energy.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/nonbonded/nb_free_energy.c -fPIC -DPIC -o .libs/nb_free_energy.o ../../../../src/gmxlib/nonbonded/nb_free_energy.c: In function 'gmx_nb_free_energy_kernel': ../../../../src/gmxlib/nonbonded/nb_free_energy.c:100:25: warning: unused variable 'H' [-Wunused-variable] real Y,F,G,H,Fp,Geps,Heps2,eps,eps2,VV,FF; ^ ../../../../src/gmxlib/nonbonded/nb_free_energy.c:100:23: warning: unused variable 'G' [-Wunused-variable] real Y,F,G,H,Fp,Geps,Heps2,eps,eps2,VV,FF; ^ ../../../../src/gmxlib/nonbonded/nb_free_energy.c:89:19: warning: unused variable 'rinvsix' [-Wunused-variable] real rinvsix; ^~~~~~~ ../../../../src/gmxlib/nonbonded/nb_free_energy.c:86:27: warning: unused variable 'vcoul' [-Wunused-variable] real qqA,qqB,vcoul,vctot,krsq; ^~~~~ In file included from ../../../../src/gmxlib/nonbonded/nb_free_energy.c:42: At top level: ../../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../../include/vec.h:121, from ../../../../src/gmxlib/nonbonded/nb_free_energy.c:42: ../../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nonbonded.lo ../../../../src/gmxlib/nonbonded/nonbonded.c mkdir .libs x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/nonbonded/nonbonded.c -fPIC -DPIC -o .libs/nonbonded.o ../../../../src/gmxlib/nonbonded/nonbonded.c: In function 'do_nonbonded': ../../../../src/gmxlib/nonbonded/nonbonded.c:283:18: warning: unused variable 'fp' [-Wunused-variable] FILE * fp; ^~ ../../../../src/gmxlib/nonbonded/nonbonded.c:281:18: warning: unused variable 'bWater' [-Wunused-variable] bool bWater; ^~~~~~ ../../../../src/gmxlib/nonbonded/nonbonded.c:279:43: warning: unused variable 'sz' [-Wunused-variable] int n,n0,n1,i,i0,i1,nrnb_ind,sz; ^~ ../../../../src/gmxlib/nonbonded/nonbonded.c: In function 'do_listed_vdw_q': ../../../../src/gmxlib/nonbonded/nonbonded.c:547:15: warning: unused variable 'tmplist' [-Wunused-variable] t_nblist tmplist; ^~~~~~~ ../../../../src/gmxlib/nonbonded/nonbonded.c:538:25: warning: unused variable 'i2' [-Wunused-variable] int i0=0,i1=1,i2=2; ^~ In file included from ../../../../src/gmxlib/nonbonded/nonbonded.c:53: At top level: ../../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../../src/gmxlib/nonbonded/nonbonded.c:50: ../../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../../include/vec.h:121, from ../../../../src/gmxlib/nonbonded/nonbonded.c:50: ../../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded' /bin/sh ../../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o libnonbonded.la nonbonded.lo nb_free_energy.lo nb_generic.lo nb_kernel_x86_64_sse/libnb_kernel_x86_64_sse.la nb_kernel/libnb_kernel.la -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath rm -fr .libs/libnonbonded.lax mkdir .libs/libnonbonded.lax rm -fr .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a mkdir .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a (cd .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a && ar x /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/.libs/libnb_kernel_x86_64_sse.a) rm -fr .libs/libnonbonded.lax/libnb_kernel.a mkdir .libs/libnonbonded.lax/libnb_kernel.a (cd .libs/libnonbonded.lax/libnb_kernel.a && ar x /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel/.libs/libnb_kernel.a) ar cru .libs/libnonbonded.a .libs/nonbonded.o .libs/nb_free_energy.o .libs/nb_generic.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel_x86_64_sse_test_asm.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel430_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel410_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel400_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel334_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel333_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel332_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel331_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel330_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel314_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel313_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel312_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel311_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel310_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel304_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel303_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel302_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel301_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel300_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel234_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel233_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel232_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel231_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel230_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel214_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel213_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel212_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel211_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel210_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel204_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel203_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel202_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel201_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel200_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel134_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel133_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel132_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel131_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel130_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel114_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel113_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel112_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel111_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel110_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel104_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel103_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel102_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel101_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel100_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel030_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel010_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel_f77sync.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel430_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel420_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel410_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel400_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel334_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel333_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel332_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel331_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel330_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel324_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel323_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel322_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel321_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel320_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel314_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel313_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel312_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel311_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel310_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel304_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel303_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel302_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel301_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel300_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel234_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel233_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel232_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel231_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel230_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel224_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel223_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel222_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel221_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel220_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel214_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel213_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel212_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel211_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel210_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel204_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel203_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel202_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel201_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel200_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel134_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel133_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel132_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel131_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel130_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel124_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel123_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel122_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel121_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel120_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel114_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel113_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel112_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel111_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel110_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel104_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel103_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel102_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel101_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel100_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel030_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel020_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel010_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel.o ranlib .libs/libnonbonded.a rm -fr .libs/libnonbonded.lax creating libnonbonded.la (cd .libs && rm -f libnonbonded.la && ln -s ../libnonbonded.la libnonbonded.la) make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded' Making all in gmx_blas make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o drot.lo ../../../../src/gmxlib/gmx_blas/drot.c mkdir .libs x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/drot.c -fPIC -DPIC -o .libs/drot.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dcopy.lo ../../../../src/gmxlib/gmx_blas/dcopy.c mkdir .libs mkdir: cannot create directory '.libs': File exists x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dcopy.c -fPIC -DPIC -o .libs/dcopy.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dswap.lo ../../../../src/gmxlib/gmx_blas/dswap.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dswap.c -fPIC -DPIC -o .libs/dswap.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dasum.lo ../../../../src/gmxlib/gmx_blas/dasum.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dasum.c -fPIC -DPIC -o .libs/dasum.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dger.lo ../../../../src/gmxlib/gmx_blas/dger.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dger.c -fPIC -DPIC -o .libs/dger.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dsyr2.lo ../../../../src/gmxlib/gmx_blas/dsyr2.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dsyr2.c -fPIC -DPIC -o .libs/dsyr2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dgemm.lo ../../../../src/gmxlib/gmx_blas/dgemm.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dgemm.c -fPIC -DPIC -o .libs/dgemm.o ../../../../src/gmxlib/gmx_blas/dgemm.c: In function 'dgemm_': ../../../../src/gmxlib/gmx_blas/dgemm.c:27:19: warning: variable 'nrowb' set but not used [-Wunused-but-set-variable] int nrowa,ncola,nrowb; ^~~~~ ../../../../src/gmxlib/gmx_blas/dgemm.c:27:13: warning: variable 'ncola' set but not used [-Wunused-but-set-variable] int nrowa,ncola,nrowb; ^~~~~ ../../../../src/gmxlib/gmx_blas/dgemm.c:27:7: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable] int nrowa,ncola,nrowb; ^~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o daxpy.lo ../../../../src/gmxlib/gmx_blas/daxpy.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/daxpy.c -fPIC -DPIC -o .libs/daxpy.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dnrm2.lo ../../../../src/gmxlib/gmx_blas/dnrm2.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dnrm2.c -fPIC -DPIC -o .libs/dnrm2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ddot.lo ../../../../src/gmxlib/gmx_blas/ddot.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/ddot.c -fPIC -DPIC -o .libs/ddot.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dtrmm.lo ../../../../src/gmxlib/gmx_blas/dtrmm.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dtrmm.c -fPIC -DPIC -o .libs/dtrmm.o ../../../../src/gmxlib/gmx_blas/dtrmm.c: In function 'dtrmm_': ../../../../src/gmxlib/gmx_blas/dtrmm.c:32:9: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable] int nrowa; ^~~~~ ../../../../src/gmxlib/gmx_blas/dtrmm.c:29:20: warning: variable 'info' set but not used [-Wunused-but-set-variable] int i__, j, k, info; ^~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dgemv.lo ../../../../src/gmxlib/gmx_blas/dgemv.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dgemv.c -fPIC -DPIC -o .libs/dgemv.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dscal.lo ../../../../src/gmxlib/gmx_blas/dscal.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dscal.c -fPIC -DPIC -o .libs/dscal.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dsymv.lo ../../../../src/gmxlib/gmx_blas/dsymv.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dsymv.c -fPIC -DPIC -o .libs/dsymv.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o idamax.lo ../../../../src/gmxlib/gmx_blas/idamax.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/idamax.c -fPIC -DPIC -o .libs/idamax.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dtrsm.lo ../../../../src/gmxlib/gmx_blas/dtrsm.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dtrsm.c -fPIC -DPIC -o .libs/dtrsm.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sasum.lo ../../../../src/gmxlib/gmx_blas/sasum.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/sasum.c -fPIC -DPIC -o .libs/sasum.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o scopy.lo ../../../../src/gmxlib/gmx_blas/scopy.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/scopy.c -fPIC -DPIC -o .libs/scopy.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dtrmv.lo ../../../../src/gmxlib/gmx_blas/dtrmv.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dtrmv.c -fPIC -DPIC -o .libs/dtrmv.o ../../../../src/gmxlib/gmx_blas/dtrmv.c: In function 'dtrmv_': ../../../../src/gmxlib/gmx_blas/dtrmv.c:18:29: warning: variable 'info' set but not used [-Wunused-but-set-variable] int i__, j, ix, jx, kx, info; ^~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dsyr2k.lo ../../../../src/gmxlib/gmx_blas/dsyr2k.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dsyr2k.c -fPIC -DPIC -o .libs/dsyr2k.o ../../../../src/gmxlib/gmx_blas/dsyr2k.c: In function 'dsyr2k_': ../../../../src/gmxlib/gmx_blas/dsyr2k.c:23:7: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable] int nrowa; ^~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o srot.lo ../../../../src/gmxlib/gmx_blas/srot.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/srot.c -fPIC -DPIC -o .libs/srot.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sger.lo ../../../../src/gmxlib/gmx_blas/sger.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/sger.c -fPIC -DPIC -o .libs/sger.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sgemm.lo ../../../../src/gmxlib/gmx_blas/sgemm.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/sgemm.c -fPIC -DPIC -o .libs/sgemm.o ../../../../src/gmxlib/gmx_blas/sgemm.c: In function 'sgemm_': ../../../../src/gmxlib/gmx_blas/sgemm.c:26:19: warning: variable 'nrowb' set but not used [-Wunused-but-set-variable] int nrowa,ncola,nrowb; ^~~~~ ../../../../src/gmxlib/gmx_blas/sgemm.c:26:13: warning: variable 'ncola' set but not used [-Wunused-but-set-variable] int nrowa,ncola,nrowb; ^~~~~ ../../../../src/gmxlib/gmx_blas/sgemm.c:26:7: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable] int nrowa,ncola,nrowb; ^~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sswap.lo ../../../../src/gmxlib/gmx_blas/sswap.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/sswap.c -fPIC -DPIC -o .libs/sswap.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ssyr2.lo ../../../../src/gmxlib/gmx_blas/ssyr2.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/ssyr2.c -fPIC -DPIC -o .libs/ssyr2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o saxpy.lo ../../../../src/gmxlib/gmx_blas/saxpy.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/saxpy.c -fPIC -DPIC -o .libs/saxpy.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sdot.lo ../../../../src/gmxlib/gmx_blas/sdot.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/sdot.c -fPIC -DPIC -o .libs/sdot.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sscal.lo ../../../../src/gmxlib/gmx_blas/sscal.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/sscal.c -fPIC -DPIC -o .libs/sscal.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o snrm2.lo ../../../../src/gmxlib/gmx_blas/snrm2.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/snrm2.c -fPIC -DPIC -o .libs/snrm2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sgemv.lo ../../../../src/gmxlib/gmx_blas/sgemv.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/sgemv.c -fPIC -DPIC -o .libs/sgemv.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o strmm.lo ../../../../src/gmxlib/gmx_blas/strmm.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/strmm.c -fPIC -DPIC -o .libs/strmm.o ../../../../src/gmxlib/gmx_blas/strmm.c: In function 'strmm_': ../../../../src/gmxlib/gmx_blas/strmm.c:31:9: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable] int nrowa; ^~~~~ ../../../../src/gmxlib/gmx_blas/strmm.c:28:20: warning: variable 'info' set but not used [-Wunused-but-set-variable] int i__, j, k, info; ^~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o strsm.lo ../../../../src/gmxlib/gmx_blas/strsm.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/strsm.c -fPIC -DPIC -o .libs/strsm.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o isamax.lo ../../../../src/gmxlib/gmx_blas/isamax.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/isamax.c -fPIC -DPIC -o .libs/isamax.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ssymv.lo ../../../../src/gmxlib/gmx_blas/ssymv.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/ssymv.c -fPIC -DPIC -o .libs/ssymv.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ssyr2k.lo ../../../../src/gmxlib/gmx_blas/ssyr2k.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/ssyr2k.c -fPIC -DPIC -o .libs/ssyr2k.o ../../../../src/gmxlib/gmx_blas/ssyr2k.c: In function 'ssyr2k_': ../../../../src/gmxlib/gmx_blas/ssyr2k.c:22:7: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable] int nrowa; ^~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o strmv.lo ../../../../src/gmxlib/gmx_blas/strmv.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/strmv.c -fPIC -DPIC -o .libs/strmv.o ../../../../src/gmxlib/gmx_blas/strmv.c: In function 'strmv_': ../../../../src/gmxlib/gmx_blas/strmv.c:18:29: warning: variable 'info' set but not used [-Wunused-but-set-variable] int i__, j, ix, jx, kx, info; ^~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o libblas.la dasum.lo dcopy.lo dgemm.lo dger.lo drot.lo dswap.lo dsyr2.lo dtrmm.lo dtrsm.lo daxpy.lo ddot.lo dgemv.lo dnrm2.lo dscal.lo dsymv.lo dsyr2k.lo dtrmv.lo idamax.lo sasum.lo scopy.lo sgemm.lo sger.lo srot.lo sswap.lo ssyr2.lo strmm.lo strsm.lo saxpy.lo sdot.lo sgemv.lo snrm2.lo sscal.lo ssymv.lo ssyr2k.lo strmv.lo isamax.lo -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath ar cru .libs/libblas.a .libs/dasum.o .libs/dcopy.o .libs/dgemm.o .libs/dger.o .libs/drot.o .libs/dswap.o .libs/dsyr2.o .libs/dtrmm.o .libs/dtrsm.o .libs/daxpy.o .libs/ddot.o .libs/dgemv.o .libs/dnrm2.o .libs/dscal.o .libs/dsymv.o .libs/dsyr2k.o .libs/dtrmv.o .libs/idamax.o .libs/sasum.o .libs/scopy.o .libs/sgemm.o .libs/sger.o .libs/srot.o .libs/sswap.o .libs/ssyr2.o .libs/strmm.o .libs/strsm.o .libs/saxpy.o .libs/sdot.o .libs/sgemv.o .libs/snrm2.o .libs/sscal.o .libs/ssymv.o .libs/ssyr2k.o .libs/strmv.o .libs/isamax.o ranlib .libs/libblas.a creating libblas.la (cd .libs && rm -f libblas.la && ln -s ../libblas.la libblas.la) make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' Making all in gmx_lapack make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlarnv.lo ../../../../src/gmxlib/gmx_lapack/dlarnv.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlarnv.c -fPIC -DPIC -o .libs/dlarnv.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dgetf2.lo ../../../../src/gmxlib/gmx_lapack/dgetf2.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgetf2.c -fPIC -DPIC -o .libs/dgetf2.o ../../../../src/gmxlib/gmx_lapack/dgetf2.c: In function 'dgetf2_': ../../../../src/gmxlib/gmx_lapack/dgetf2.c:17:10: warning: variable 'one' set but not used [-Wunused-but-set-variable] double one,minusone; ^~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlamrg.lo ../../../../src/gmxlib/gmx_lapack/dlamrg.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlamrg.c -fPIC -DPIC -o .libs/dlamrg.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dorgl2.lo ../../../../src/gmxlib/gmx_lapack/dorgl2.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dorgl2.c -fPIC -DPIC -o .libs/dorgl2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasq6.lo ../../../../src/gmxlib/gmx_lapack/dlasq6.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasq6.c -fPIC -DPIC -o .libs/dlasq6.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasd0.lo ../../../../src/gmxlib/gmx_lapack/dlasd0.c mkdir .libs x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasd0.c -fPIC -DPIC -o .libs/dlasd0.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasda.lo ../../../../src/gmxlib/gmx_lapack/dlasda.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasda.c -fPIC -DPIC -o .libs/dlasda.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dbdsdc.lo ../../../../src/gmxlib/gmx_lapack/dbdsdc.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dbdsdc.c -fPIC -DPIC -o .libs/dbdsdc.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dormqr.lo ../../../../src/gmxlib/gmx_lapack/dormqr.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dormqr.c -fPIC -DPIC -o .libs/dormqr.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dgetrf.lo ../../../../src/gmxlib/gmx_lapack/dgetrf.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgetrf.c -fPIC -DPIC -o .libs/dgetrf.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasd1.lo ../../../../src/gmxlib/gmx_lapack/dlasd1.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasd1.c -fPIC -DPIC -o .libs/dlasd1.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlange.lo ../../../../src/gmxlib/gmx_lapack/dlange.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlange.c -fPIC -DPIC -o .libs/dlange.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dtrtri.lo ../../../../src/gmxlib/gmx_lapack/dtrtri.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dtrtri.c -fPIC -DPIC -o .libs/dtrtri.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasdq.lo ../../../../src/gmxlib/gmx_lapack/dlasdq.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasdq.c -fPIC -DPIC -o .libs/dlasdq.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dormtr.lo ../../../../src/gmxlib/gmx_lapack/dormtr.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dormtr.c -fPIC -DPIC -o .libs/dormtr.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dorglq.lo ../../../../src/gmxlib/gmx_lapack/dorglq.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dorglq.c -fPIC -DPIC -o .libs/dorglq.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dgebd2.lo ../../../../src/gmxlib/gmx_lapack/dgebd2.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgebd2.c -fPIC -DPIC -o .libs/dgebd2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlanst.lo ../../../../src/gmxlib/gmx_lapack/dlanst.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlanst.c -fPIC -DPIC -o .libs/dlanst.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasr.lo ../../../../src/gmxlib/gmx_lapack/dlasr.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasr.c -fPIC -DPIC -o .libs/dlasr.o ../../../../src/gmxlib/gmx_lapack/dlasr.c: In function 'dlasr_': ../../../../src/gmxlib/gmx_lapack/dlasr.c:21:17: warning: variable 'info' set but not used [-Wunused-but-set-variable] int i__, j, info; ^~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasdt.lo ../../../../src/gmxlib/gmx_lapack/dlasdt.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasdt.c -fPIC -DPIC -o .libs/dlasdt.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlabrd.lo ../../../../src/gmxlib/gmx_lapack/dlabrd.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlabrd.c -fPIC -DPIC -o .libs/dlabrd.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dbdsqr.lo ../../../../src/gmxlib/gmx_lapack/dbdsqr.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dbdsqr.c -fPIC -DPIC -o .libs/dbdsqr.o ../../../../src/gmxlib/gmx_lapack/dbdsqr.c: In function 'dbdsqr_': ../../../../src/gmxlib/gmx_lapack/dbdsqr.c:61:12: warning: unused variable 'ftmp' [-Wunused-variable] double ftmp; ^~~~ ../../../../src/gmxlib/gmx_lapack/dbdsqr.c:59:12: warning: variable 'sminlo' set but not used [-Wunused-but-set-variable] double sminlo, tolmul; ^~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasrt.lo ../../../../src/gmxlib/gmx_lapack/dlasrt.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasrt.c -fPIC -DPIC -o .libs/dlasrt.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dgebrd.lo ../../../../src/gmxlib/gmx_lapack/dgebrd.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgebrd.c -fPIC -DPIC -o .libs/dgebrd.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dorgqr.lo ../../../../src/gmxlib/gmx_lapack/dorgqr.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dorgqr.c -fPIC -DPIC -o .libs/dorgqr.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasd2.lo ../../../../src/gmxlib/gmx_lapack/dlasd2.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasd2.c -fPIC -DPIC -o .libs/dlasd2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlapy2.lo ../../../../src/gmxlib/gmx_lapack/dlapy2.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlapy2.c -fPIC -DPIC -o .libs/dlapy2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlacpy.lo ../../../../src/gmxlib/gmx_lapack/dlacpy.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c 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/bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlassq.lo ../../../../src/gmxlib/gmx_lapack/dlassq.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlassq.c -fPIC -DPIC -o .libs/dlassq.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlaset.lo ../../../../src/gmxlib/gmx_lapack/dlaset.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlaset.c -fPIC -DPIC -o .libs/dlaset.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dstebz.lo ../../../../src/gmxlib/gmx_lapack/dstebz.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c 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/bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dgetrs.lo ../../../../src/gmxlib/gmx_lapack/dgetrs.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgetrs.c -fPIC -DPIC -o .libs/dgetrs.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dgelq2.lo 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/bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dgeqrf.lo ../../../../src/gmxlib/gmx_lapack/dgeqrf.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgeqrf.c -fPIC -DPIC -o .libs/dgeqrf.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlarfb.lo ../../../../src/gmxlib/gmx_lapack/dlarfb.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlarfb.c -fPIC -DPIC -o .libs/dlarfb.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlagtf.lo ../../../../src/gmxlib/gmx_lapack/dlagtf.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c 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../../../../src/gmxlib/gmx_lapack/dorg2r.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dorg2r.c -fPIC -DPIC -o .libs/dorg2r.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dormlq.lo ../../../../src/gmxlib/gmx_lapack/dormlq.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c 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/bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasq4.lo ../../../../src/gmxlib/gmx_lapack/dlasq4.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasq4.c -fPIC -DPIC -o .libs/dlasq4.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasd7.lo ../../../../src/gmxlib/gmx_lapack/dlasd7.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasd7.c -fPIC -DPIC -o .libs/dlasd7.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlagts.lo ../../../../src/gmxlib/gmx_lapack/dlagts.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlagts.c -fPIC -DPIC -o .libs/dlagts.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlarft.lo ../../../../src/gmxlib/gmx_lapack/dlarft.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlarft.c -fPIC -DPIC -o .libs/dlarft.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dgesdd.lo ../../../../src/gmxlib/gmx_lapack/dgesdd.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgesdd.c -fPIC -DPIC -o .libs/dgesdd.o ../../../../src/gmxlib/gmx_lapack/dgesdd.c: In function 'dgesdd_': ../../../../src/gmxlib/gmx_lapack/dgesdd.c:40:9: warning: variable 'wntqas' set but not used [-Wunused-but-set-variable] int wntqas, lquery; ^~~~~~ ../../../../src/gmxlib/gmx_lapack/dgesdd.c:38:9: warning: variable 'minwrk' set but not used [-Wunused-but-set-variable] int minwrk, ldwrku, maxwrk, ldwkvt; ^~~~~~ ../../../../src/gmxlib/gmx_lapack/dgesdd.c:35:16: warning: variable 'wntqo' set but not used [-Wunused-but-set-variable] int wntqn, wntqo, wntqs; ^~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlascl.lo ../../../../src/gmxlib/gmx_lapack/dlascl.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlascl.c -fPIC -DPIC -o .libs/dlascl.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory 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-Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasd8.c -fPIC -DPIC -o .libs/dlasd8.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlaev2.lo ../../../../src/gmxlib/gmx_lapack/dlaev2.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlaev2.c -fPIC -DPIC -o .libs/dlaev2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasq5.lo ../../../../src/gmxlib/gmx_lapack/dlasq5.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasq5.c -fPIC -DPIC -o .libs/dlasq5.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasrt2.lo ../../../../src/gmxlib/gmx_lapack/dlasrt2.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasrt2.c -fPIC -DPIC -o .libs/dlasrt2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dsyevr.lo ../../../../src/gmxlib/gmx_lapack/dsyevr.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dsyevr.c -fPIC -DPIC -o .libs/dsyevr.o ../../../../src/gmxlib/gmx_lapack/dsyevr.c: In function 'dsyevr_': ../../../../src/gmxlib/gmx_lapack/dsyevr.c:36:12: warning: variable 'abstll' set but not used [-Wunused-but-set-variable] double abstll, bignum; ^~~~~~ ../../../../src/gmxlib/gmx_lapack/dsyevr.c:33:17: warning: variable 'ieeeok' set but not used [-Wunused-but-set-variable] int iscale, ieeeok, indibl, indifl; ^~~~~~ ../../../../src/gmxlib/gmx_lapack/dsyevr.c:21:22: warning: variable 'vuu' set but not used [-Wunused-but-set-variable] double eps, vll, vuu, tmp1; ^~~ ../../../../src/gmxlib/gmx_lapack/dsyevr.c:21:17: warning: variable 'vll' set but not used [-Wunused-but-set-variable] double eps, vll, vuu, tmp1; ^~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlansy.lo ../../../../src/gmxlib/gmx_lapack/dlansy.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlansy.c -fPIC -DPIC -o .libs/dlansy.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlarrfx.lo ../../../../src/gmxlib/gmx_lapack/dlarrfx.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlarrfx.c -fPIC -DPIC -o .libs/dlarrfx.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dsteqr.lo ../../../../src/gmxlib/gmx_lapack/dsteqr.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dsteqr.c -fPIC -DPIC -o .libs/dsteqr.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlar1vx.lo ../../../../src/gmxlib/gmx_lapack/dlar1vx.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlar1vx.c -fPIC -DPIC -o .libs/dlar1vx.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlarrbx.lo ../../../../src/gmxlib/gmx_lapack/dlarrbx.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlarrbx.c -fPIC -DPIC -o .libs/dlarrbx.o ../../../../src/gmxlib/gmx_lapack/dlarrbx.c: In function 'dlarrbx_': ../../../../src/gmxlib/gmx_lapack/dlarrbx.c:36:33: warning: variable 'error' set but not used [-Wunused-but-set-variable] double right, width, dplus, error; ^~~~~ ../../../../src/gmxlib/gmx_lapack/dlarrbx.c:34:12: warning: variable 'eps' set but not used [-Wunused-but-set-variable] double eps, tmp, left; ^~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slamrg.lo ../../../../src/gmxlib/gmx_lapack/slamrg.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slamrg.c -fPIC -DPIC -o .libs/slamrg.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sgetf2.lo ../../../../src/gmxlib/gmx_lapack/sgetf2.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgetf2.c -fPIC -DPIC -o .libs/sgetf2.o ../../../../src/gmxlib/gmx_lapack/sgetf2.c: In function 'sgetf2_': ../../../../src/gmxlib/gmx_lapack/sgetf2.c:17:9: warning: variable 'one' set but not used [-Wunused-but-set-variable] float one,minusone; ^~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slarnv.lo ../../../../src/gmxlib/gmx_lapack/slarnv.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarnv.c -fPIC -DPIC -o .libs/slarnv.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sbdsdc.lo ../../../../src/gmxlib/gmx_lapack/sbdsdc.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sbdsdc.c -fPIC -DPIC -o .libs/sbdsdc.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlarrex.lo ../../../../src/gmxlib/gmx_lapack/dlarrex.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlarrex.c -fPIC -DPIC -o .libs/dlarrex.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasd0.lo ../../../../src/gmxlib/gmx_lapack/slasd0.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasd0.c -fPIC -DPIC -o .libs/slasd0.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlarrvx.lo ../../../../src/gmxlib/gmx_lapack/dlarrvx.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlarrvx.c -fPIC -DPIC -o .libs/dlarrvx.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sorgl2.lo ../../../../src/gmxlib/gmx_lapack/sorgl2.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sorgl2.c -fPIC -DPIC -o .libs/sorgl2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasq6.lo ../../../../src/gmxlib/gmx_lapack/slasq6.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasq6.c -fPIC -DPIC -o .libs/slasq6.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasda.lo ../../../../src/gmxlib/gmx_lapack/slasda.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasda.c -fPIC -DPIC -o .libs/slasda.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sormqr.lo ../../../../src/gmxlib/gmx_lapack/sormqr.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sormqr.c -fPIC -DPIC -o .libs/sormqr.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sgetrf.lo ../../../../src/gmxlib/gmx_lapack/sgetrf.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgetrf.c -fPIC -DPIC -o .libs/sgetrf.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slange.lo ../../../../src/gmxlib/gmx_lapack/slange.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slange.c -fPIC -DPIC -o .libs/slange.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasd1.lo ../../../../src/gmxlib/gmx_lapack/slasd1.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasd1.c -fPIC -DPIC -o .libs/slasd1.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ssytrd.lo ../../../../src/gmxlib/gmx_lapack/ssytrd.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/ssytrd.c -fPIC -DPIC -o .libs/ssytrd.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasdq.lo ../../../../src/gmxlib/gmx_lapack/slasdq.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasdq.c -fPIC -DPIC -o .libs/slasdq.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sorglq.lo ../../../../src/gmxlib/gmx_lapack/sorglq.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sorglq.c -fPIC -DPIC -o .libs/sorglq.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sormtr.lo ../../../../src/gmxlib/gmx_lapack/sormtr.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sormtr.c -fPIC -DPIC -o .libs/sormtr.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sgebd2.lo ../../../../src/gmxlib/gmx_lapack/sgebd2.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgebd2.c -fPIC -DPIC -o .libs/sgebd2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasr.lo ../../../../src/gmxlib/gmx_lapack/slasr.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasr.c -fPIC -DPIC -o .libs/slasr.o ../../../../src/gmxlib/gmx_lapack/slasr.c: In function 'slasr_': ../../../../src/gmxlib/gmx_lapack/slasr.c:21:17: warning: variable 'info' set but not used [-Wunused-but-set-variable] int i__, j, info; ^~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slanst.lo ../../../../src/gmxlib/gmx_lapack/slanst.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slanst.c -fPIC -DPIC -o .libs/slanst.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasdt.lo ../../../../src/gmxlib/gmx_lapack/slasdt.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasdt.c -fPIC -DPIC -o .libs/slasdt.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sbdsqr.lo ../../../../src/gmxlib/gmx_lapack/sbdsqr.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sbdsqr.c -fPIC -DPIC -o .libs/sbdsqr.o ../../../../src/gmxlib/gmx_lapack/sbdsqr.c: In function 'sbdsqr_': ../../../../src/gmxlib/gmx_lapack/sbdsqr.c:61:11: warning: unused variable 'ftmp' [-Wunused-variable] float ftmp; ^~~~ ../../../../src/gmxlib/gmx_lapack/sbdsqr.c:59:11: warning: variable 'sminlo' set but not used [-Wunused-but-set-variable] float sminlo, tolmul; ^~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasrt.lo ../../../../src/gmxlib/gmx_lapack/slasrt.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasrt.c -fPIC -DPIC -o .libs/slasrt.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sorgqr.lo ../../../../src/gmxlib/gmx_lapack/sorgqr.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sorgqr.c -fPIC -DPIC -o .libs/sorgqr.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slabrd.lo ../../../../src/gmxlib/gmx_lapack/slabrd.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slabrd.c -fPIC -DPIC -o .libs/slabrd.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sgebrd.lo ../../../../src/gmxlib/gmx_lapack/sgebrd.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c 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/bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sgetrs.lo ../../../../src/gmxlib/gmx_lapack/sgetrs.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgetrs.c -fPIC -DPIC -o .libs/sgetrs.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slacpy.lo 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/bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slassq.lo ../../../../src/gmxlib/gmx_lapack/slassq.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slassq.c -fPIC -DPIC -o .libs/slassq.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sorm2l.lo 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[-Wunused-but-set-variable] int i__, i1, i2, i3, ic, jc, mi, ni, nq; ^~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasv2.lo ../../../../src/gmxlib/gmx_lapack/slasv2.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasv2.c -fPIC -DPIC -o .libs/slasv2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' 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/bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ssterf.lo ../../../../src/gmxlib/gmx_lapack/ssterf.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/ssterf.c -fPIC -DPIC -o .libs/ssterf.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasd6.lo ../../../../src/gmxlib/gmx_lapack/slasd6.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasd6.c -fPIC -DPIC -o .libs/slasd6.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slaed6.lo ../../../../src/gmxlib/gmx_lapack/slaed6.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c 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/bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sstevr.lo ../../../../src/gmxlib/gmx_lapack/sstevr.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sstevr.c -fPIC -DPIC -o .libs/sstevr.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasq3.lo 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../../../../src/gmxlib/gmx_lapack/slagts.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slagts.c -fPIC -DPIC -o .libs/slagts.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slarft.lo ../../../../src/gmxlib/gmx_lapack/slarft.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarft.c -fPIC -DPIC -o .libs/slarft.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sgesdd.lo ../../../../src/gmxlib/gmx_lapack/sgesdd.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgesdd.c -fPIC -DPIC -o .libs/sgesdd.o ../../../../src/gmxlib/gmx_lapack/sgesdd.c: In function 'sgesdd_': ../../../../src/gmxlib/gmx_lapack/sgesdd.c:40:9: warning: variable 'wntqas' set but not used [-Wunused-but-set-variable] int wntqas, lquery; ^~~~~~ ../../../../src/gmxlib/gmx_lapack/sgesdd.c:38:9: warning: variable 'minwrk' set but not used [-Wunused-but-set-variable] int minwrk, ldwrku, maxwrk, ldwkvt; ^~~~~~ ../../../../src/gmxlib/gmx_lapack/sgesdd.c:35:16: warning: variable 'wntqo' set but not used [-Wunused-but-set-variable] int wntqn, wntqo, wntqs; ^~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slascl.lo ../../../../src/gmxlib/gmx_lapack/slascl.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slascl.c -fPIC -DPIC -o .libs/slascl.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sorgbr.lo ../../../../src/gmxlib/gmx_lapack/sorgbr.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sorgbr.c -fPIC -DPIC -o .libs/sorgbr.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasd8.lo ../../../../src/gmxlib/gmx_lapack/slasd8.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasd8.c -fPIC -DPIC -o .libs/slasd8.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasq5.lo ../../../../src/gmxlib/gmx_lapack/slasq5.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasq5.c -fPIC -DPIC -o .libs/slasq5.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sormql.lo ../../../../src/gmxlib/gmx_lapack/sormql.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sormql.c -fPIC -DPIC -o .libs/sormql.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slaev2.lo ../../../../src/gmxlib/gmx_lapack/slaev2.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slaev2.c -fPIC -DPIC -o .libs/slaev2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasrt2.lo ../../../../src/gmxlib/gmx_lapack/slasrt2.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasrt2.c -fPIC -DPIC -o .libs/slasrt2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ssyevr.lo ../../../../src/gmxlib/gmx_lapack/ssyevr.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/ssyevr.c -fPIC -DPIC -o .libs/ssyevr.o ../../../../src/gmxlib/gmx_lapack/ssyevr.c: In function 'ssyevr_': ../../../../src/gmxlib/gmx_lapack/ssyevr.c:36:11: warning: variable 'abstll' set but not used [-Wunused-but-set-variable] float abstll, bignum; ^~~~~~ ../../../../src/gmxlib/gmx_lapack/ssyevr.c:33:17: warning: variable 'ieeeok' set but not used [-Wunused-but-set-variable] int iscale, ieeeok, indibl, indifl; ^~~~~~ ../../../../src/gmxlib/gmx_lapack/ssyevr.c:21:21: warning: variable 'vuu' set but not used [-Wunused-but-set-variable] float eps, vll, vuu, tmp1; ^~~ ../../../../src/gmxlib/gmx_lapack/ssyevr.c:21:16: warning: variable 'vll' set but not used [-Wunused-but-set-variable] float eps, vll, vuu, tmp1; ^~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slansy.lo ../../../../src/gmxlib/gmx_lapack/slansy.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slansy.c -fPIC -DPIC -o .libs/slansy.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slarrfx.lo ../../../../src/gmxlib/gmx_lapack/slarrfx.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarrfx.c -fPIC -DPIC -o .libs/slarrfx.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ssteqr.lo ../../../../src/gmxlib/gmx_lapack/ssteqr.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/ssteqr.c -fPIC -DPIC -o .libs/ssteqr.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slar1vx.lo ../../../../src/gmxlib/gmx_lapack/slar1vx.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slar1vx.c -fPIC -DPIC -o .libs/slar1vx.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slarrbx.lo ../../../../src/gmxlib/gmx_lapack/slarrbx.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarrbx.c -fPIC -DPIC -o .libs/slarrbx.o ../../../../src/gmxlib/gmx_lapack/slarrbx.c: In function 'slarrbx_': ../../../../src/gmxlib/gmx_lapack/slarrbx.c:36:32: warning: variable 'error' set but not used [-Wunused-but-set-variable] float right, width, dplus, error; ^~~~~ ../../../../src/gmxlib/gmx_lapack/slarrbx.c:34:11: warning: variable 'eps' set but not used [-Wunused-but-set-variable] float eps, tmp, left; ^~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ilasrt2.lo ../../../../src/gmxlib/gmx_lapack/ilasrt2.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/ilasrt2.c -fPIC -DPIC -o .libs/ilasrt2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slarrex.lo ../../../../src/gmxlib/gmx_lapack/slarrex.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarrex.c -fPIC -DPIC -o .libs/slarrex.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slarrvx.lo ../../../../src/gmxlib/gmx_lapack/slarrvx.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarrvx.c -fPIC -DPIC -o .libs/slarrvx.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o liblapack.la dbdsdc.lo dgetf2.lo dlamrg.lo dlarnv.lo dlasd0.lo dlasda.lo dlasq6.lo dorgl2.lo dormqr.lo dbdsqr.lo dgetrf.lo dlange.lo dlasd1.lo dtrtri.lo dlasdq.lo dlasr.lo dorglq.lo dormtr.lo dgebd2.lo dlabrd.lo dlanst.lo dlasd2.lo dlasdt.lo dlasrt.lo dorgqr.lo dstebz.lo dgebrd.lo dsytrd.lo dlacpy.lo dlapy2.lo dlasd3.lo dlaset.lo dlassq.lo dorm2l.lo dgetrs.lo dstegr.lo dgelq2.lo dlae2.lo dlasd4.lo dlasq1.lo dtrti2.lo dgetri.lo dlasv2.lo dorm2r.lo dstein.lo dgelqf.lo dlaebz.lo dlarf.lo dlartg.lo dlasd5.lo dlasq2.lo dlaswp.lo dormbr.lo dsterf.lo dgeqr2.lo dlaed6.lo dlarfb.lo dlaruv.lo dlasd6.lo dlasq3.lo dlatrd.lo dorml2.lo dstevr.lo dgeqrf.lo dlagtf.lo dlarfg.lo dlas2.lo dlasd7.lo dlasq4.lo dorg2r.lo dormlq.lo dsytd2.lo dgesdd.lo dlagts.lo dlarft.lo dlascl.lo dlasd8.lo dlasq5.lo dorgbr.lo dormql.lo dlaev2.lo dsteqr.lo dsyevr.lo dlasrt2.lo dlansy.lo dlar1vx.lo dlarrbx.lo dlarrex.lo dlarrfx.lo dlarrvx.lo sbdsdc.lo sgetf2.lo slamrg.lo slarnv.lo slasd0.lo slasda.lo slasq6.lo sorgl2.lo sormqr.lo sbdsqr.lo sgetrf.lo slange.lo slasd1.lo ssytrd.lo slasdq.lo slasr.lo sorglq.lo sormtr.lo sgebd2.lo slabrd.lo slanst.lo slasd2.lo slasdt.lo slasrt.lo sorgqr.lo sstebz.lo sgebrd.lo sgetrs.lo slacpy.lo slapy2.lo slasd3.lo slaset.lo slassq.lo sorm2l.lo sgetri.lo sstegr.lo sgelq2.lo slae2.lo slasd4.lo slasq1.lo strti2.lo strtri.lo slasv2.lo sorm2r.lo sstein.lo sgelqf.lo slaebz.lo slarf.lo slartg.lo slasd5.lo slasq2.lo slaswp.lo sormbr.lo ssterf.lo sgeqr2.lo slaed6.lo slarfb.lo slaruv.lo slasd6.lo slasq3.lo slatrd.lo sorml2.lo sstevr.lo sgeqrf.lo slagtf.lo slarfg.lo slas2.lo slasd7.lo slasq4.lo sorg2r.lo sormlq.lo ssytd2.lo sgesdd.lo slagts.lo slarft.lo slascl.lo slasd8.lo slasq5.lo sorgbr.lo sormql.lo slaev2.lo ssteqr.lo ssyevr.lo slasrt2.lo slansy.lo slar1vx.lo slarrbx.lo slarrex.lo slarrfx.lo slarrvx.lo ilasrt2.lo -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath ar cru .libs/liblapack.a .libs/dbdsdc.o .libs/dgetf2.o .libs/dlamrg.o .libs/dlarnv.o .libs/dlasd0.o .libs/dlasda.o .libs/dlasq6.o .libs/dorgl2.o .libs/dormqr.o .libs/dbdsqr.o .libs/dgetrf.o .libs/dlange.o .libs/dlasd1.o .libs/dtrtri.o .libs/dlasdq.o .libs/dlasr.o .libs/dorglq.o .libs/dormtr.o .libs/dgebd2.o .libs/dlabrd.o .libs/dlanst.o .libs/dlasd2.o .libs/dlasdt.o .libs/dlasrt.o .libs/dorgqr.o .libs/dstebz.o .libs/dgebrd.o .libs/dsytrd.o .libs/dlacpy.o .libs/dlapy2.o .libs/dlasd3.o .libs/dlaset.o .libs/dlassq.o .libs/dorm2l.o .libs/dgetrs.o .libs/dstegr.o .libs/dgelq2.o .libs/dlae2.o .libs/dlasd4.o .libs/dlasq1.o .libs/dtrti2.o .libs/dgetri.o .libs/dlasv2.o .libs/dorm2r.o .libs/dstein.o .libs/dgelqf.o .libs/dlaebz.o .libs/dlarf.o .libs/dlartg.o .libs/dlasd5.o .libs/dlasq2.o .libs/dlaswp.o .libs/dormbr.o .libs/dsterf.o .libs/dgeqr2.o .libs/dlaed6.o .libs/dlarfb.o .libs/dlaruv.o .libs/dlasd6.o .libs/dlasq3.o .libs/dlatrd.o .libs/dorml2.o .libs/dstevr.o .libs/dgeqrf.o .libs/dlagtf.o .libs/dlarfg.o .libs/dlas2.o .libs/dlasd7.o .libs/dlasq4.o .libs/dorg2r.o .libs/dormlq.o .libs/dsytd2.o .libs/dgesdd.o .libs/dlagts.o .libs/dlarft.o .libs/dlascl.o .libs/dlasd8.o .libs/dlasq5.o .libs/dorgbr.o .libs/dormql.o .libs/dlaev2.o .libs/dsteqr.o .libs/dsyevr.o .libs/dlasrt2.o .libs/dlansy.o .libs/dlar1vx.o .libs/dlarrbx.o .libs/dlarrex.o .libs/dlarrfx.o .libs/dlarrvx.o .libs/sbdsdc.o .libs/sgetf2.o .libs/slamrg.o .libs/slarnv.o .libs/slasd0.o .libs/slasda.o .libs/slasq6.o .libs/sorgl2.o .libs/sormqr.o .libs/sbdsqr.o .libs/sgetrf.o .libs/slange.o .libs/slasd1.o .libs/ssytrd.o .libs/slasdq.o .libs/slasr.o .libs/sorglq.o .libs/sormtr.o .libs/sgebd2.o .libs/slabrd.o .libs/slanst.o .libs/slasd2.o .libs/slasdt.o .libs/slasrt.o .libs/sorgqr.o .libs/sstebz.o .libs/sgebrd.o .libs/sgetrs.o .libs/slacpy.o .libs/slapy2.o .libs/slasd3.o .libs/slaset.o .libs/slassq.o .libs/sorm2l.o .libs/sgetri.o .libs/sstegr.o .libs/sgelq2.o .libs/slae2.o .libs/slasd4.o .libs/slasq1.o .libs/strti2.o .libs/strtri.o .libs/slasv2.o .libs/sorm2r.o .libs/sstein.o .libs/sgelqf.o .libs/slaebz.o .libs/slarf.o .libs/slartg.o .libs/slasd5.o .libs/slasq2.o .libs/slaswp.o .libs/sormbr.o .libs/ssterf.o .libs/sgeqr2.o .libs/slaed6.o .libs/slarfb.o .libs/slaruv.o .libs/slasd6.o .libs/slasq3.o .libs/slatrd.o .libs/sorml2.o .libs/sstevr.o .libs/sgeqrf.o .libs/slagtf.o .libs/slarfg.o .libs/slas2.o .libs/slasd7.o .libs/slasq4.o .libs/sorg2r.o .libs/sormlq.o .libs/ssytd2.o .libs/sgesdd.o .libs/slagts.o .libs/slarft.o .libs/slascl.o .libs/slasd8.o .libs/slasq5.o .libs/sorgbr.o .libs/sormql.o .libs/slaev2.o .libs/ssteqr.o .libs/ssyevr.o .libs/slasrt2.o .libs/slansy.o .libs/slar1vx.o .libs/slarrbx.o .libs/slarrex.o .libs/slarrfx.o .libs/slarrvx.o .libs/ilasrt2.o ranlib .libs/liblapack.a creating liblapack.la (cd .libs && rm -f liblapack.la && ln -s ../liblapack.la liblapack.la) make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o calcgrid.lo ../../../src/gmxlib/calcgrid.c mkdir .libs x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/calcgrid.c -fPIC -DPIC -o .libs/calcgrid.o ../../../src/gmxlib/calcgrid.c: In function 'calc_grid': ../../../src/gmxlib/calcgrid.c:89:8: warning: unused variable 'tmp' [-Wunused-variable] real tmp[3]; ^~~ ../../../src/gmxlib/calcgrid.c:86:10: warning: unused variable 'j' [-Wunused-variable] int i,j,nmin[DIM]; ^ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o copyrite.lo ../../../src/gmxlib/copyrite.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/copyrite.c -fPIC -DPIC -o .libs/copyrite.o ../../../src/gmxlib/copyrite.c: In function 'cool_quote': ../../../src/gmxlib/copyrite.c:181:9: warning: unused variable 's' [-Wunused-variable] char *s,*ptr; ^ ../../../src/gmxlib/copyrite.c: In function 'please_cite': ../../../src/gmxlib/copyrite.c:469:8: warning: unused variable 'j' [-Wunused-variable] int j,index; ^ In file included from ../../../include/statutil.h:51, from ../../../src/gmxlib/copyrite.c:53: At top level: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o calch.lo ../../../src/gmxlib/calch.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/calch.c -fPIC -DPIC -o .libs/calch.o ../../../src/gmxlib/calch.c: In function 'gen_waterhydrogen': ../../../src/gmxlib/calch.c:81:14: warning: unused variable 'kkk' [-Wunused-variable] rvec kkk; ^~~ In file included from ../../../src/gmxlib/calch.c:43: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../src/gmxlib/calch.c:42: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o 3dview.lo ../../../src/gmxlib/3dview.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/3dview.c -fPIC -DPIC -o .libs/3dview.o ../../../src/gmxlib/3dview.c: In function 'reset_view': ../../../src/gmxlib/3dview.c:282:8: warning: unused variable 'i' [-Wunused-variable] int i; ^ In file included from ../../../src/gmxlib/3dview.c:47: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/gmxlib/3dview.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o atomprop.lo ../../../src/gmxlib/atomprop.c mkdir .libs mkdir: cannot create directory '.libs': File exists x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/atomprop.c -fPIC -DPIC -o .libs/atomprop.o In file included from ../../../src/gmxlib/atomprop.c:52: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/gmxlib/atomprop.c:45: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o do_fit.lo ../../../src/gmxlib/do_fit.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/do_fit.c -fPIC -DPIC -o .libs/do_fit.o ../../../src/gmxlib/do_fit.c: In function 'calc_fit_R': ../../../src/gmxlib/do_fit.c:103:18: warning: unused variable 'm' [-Wunused-variable] int c,r,n,j,m,i,irot,s; ^ ../../../src/gmxlib/do_fit.c: In function 'do_fit_ndim': ../../../src/gmxlib/do_fit.c:214:10: warning: unused variable 'i' [-Wunused-variable] int i,j,m,r,c; ^ In file included from ../../../src/gmxlib/do_fit.c:44: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../src/gmxlib/do_fit.c:40: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o disre.lo ../../../src/gmxlib/disre.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/disre.c -fPIC -DPIC -o .libs/disre.o ../../../src/gmxlib/disre.c: In function 'init_disres': ../../../src/gmxlib/disre.c:62:19: warning: variable 'ip' set but not used [-Wunused-but-set-variable] t_iparams *ip; ^~ ../../../src/gmxlib/disre.c:61:26: warning: unused variable 'i' [-Wunused-variable] int fa,nmol,i,npair,np; ^ ../../../src/gmxlib/disre.c: In function 'calc_disres_R_6': ../../../src/gmxlib/disre.c:217:23: warning: unused variable 'dt' [-Wunused-variable] ivec it,jt,dt; ^~ ../../../src/gmxlib/disre.c:217:20: warning: unused variable 'jt' [-Wunused-variable] ivec it,jt,dt; ^~ ../../../src/gmxlib/disre.c:217:17: warning: unused variable 'it' [-Wunused-variable] ivec it,jt,dt; ^~ ../../../src/gmxlib/disre.c:212:37: warning: unused variable 'm' [-Wunused-variable] int fa,res,i,pair,ki,kj,m; ^ ../../../src/gmxlib/disre.c:212:34: warning: unused variable 'kj' [-Wunused-variable] int fa,res,i,pair,ki,kj,m; ^~ ../../../src/gmxlib/disre.c:212:31: warning: unused variable 'ki' [-Wunused-variable] int fa,res,i,pair,ki,kj,m; ^~ ../../../src/gmxlib/disre.c:212:24: warning: unused variable 'i' [-Wunused-variable] int fa,res,i,pair,ki,kj,m; ^ ../../../src/gmxlib/disre.c: In function 'ta_disres': ../../../src/gmxlib/disre.c:338:20: warning: unused variable 'jt' [-Wunused-variable] ivec it,jt,dt; ^~ ../../../src/gmxlib/disre.c:338:17: warning: unused variable 'it' [-Wunused-variable] ivec it,jt,dt; ^~ In file included from ../../../src/gmxlib/disre.c:52: At top level: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/gmxlib/disre.c:47: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/gmxlib/disre.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o checkpoint.lo ../../../src/gmxlib/checkpoint.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/checkpoint.c -fPIC -DPIC -o .libs/checkpoint.o ../../../src/gmxlib/checkpoint.c: In function 'do_cpte_ints': ../../../src/gmxlib/checkpoint.c:305:16: warning: unused variable 'i' [-Wunused-variable] int nf,dt,i; ^ ../../../src/gmxlib/checkpoint.c: In function 'do_cpte_doubles': ../../../src/gmxlib/checkpoint.c:371:16: warning: unused variable 'i' [-Wunused-variable] int nf,dt,i; ^ ../../../src/gmxlib/checkpoint.c: In function 'do_cpt_header': ../../../src/gmxlib/checkpoint.c:534:10: warning: unused variable 'i' [-Wunused-variable] int i; ^ ../../../src/gmxlib/checkpoint.c: In function 'write_checkpoint': ../../../src/gmxlib/checkpoint.c:837:30: warning: unused variable 'i' [-Wunused-variable] int flags_eks,flags_enh,i; ^ ../../../src/gmxlib/checkpoint.c:833:29: warning: unused variable 'flag_64bit' [-Wunused-variable] int nppnodes,npmenodes,flag_64bit; ^~~~~~~~~~ ../../../src/gmxlib/checkpoint.c: In function 'read_checkpoint': ../../../src/gmxlib/checkpoint.c:1254:40: warning: left-hand operand of comma expression has no effect [-Wunused-value] if (outputfiles[i].filename,outputfiles[i].offset < 0) ^ ../../../src/gmxlib/checkpoint.c:1036:7: warning: unused variable 'filename' [-Wunused-variable] char filename[STRLEN]; ^~~~~~~~ ../../../src/gmxlib/checkpoint.c:1033:15: warning: unused variable 'j' [-Wunused-variable] int fp,i,j; ^ ../../../src/gmxlib/checkpoint.c: In function 'list_checkpoint': ../../../src/gmxlib/checkpoint.c:1421:12: warning: unused variable 'j' [-Wunused-variable] int i,j; ^ ../../../src/gmxlib/checkpoint.c:1421:10: warning: unused variable 'i' [-Wunused-variable] int i,j; ^ ../../../src/gmxlib/checkpoint.c:1420:10: warning: unused variable 'indent' [-Wunused-variable] int indent; ^~~~~~ In file included from ../../../src/gmxlib/checkpoint.c:34: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/gmxlib/checkpoint.c:34: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/gmxlib/checkpoint.c:32: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_fatal.lo ../../../src/gmxlib/gmx_fatal.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/gmx_fatal.c -fPIC -DPIC -o .libs/gmx_fatal.o ../../../src/gmxlib/gmx_fatal.c:226:13: warning: 'fatal_error' defined but not used [-Wunused-function] static void fatal_error(int f_errno,const char *fmt,...) ^~~~~~~~~~~ ../../../src/gmxlib/gmx_fatal.c:115:13: warning: 'bputi' defined but not used [-Wunused-function] static void bputi(char *msg,int *len,int val,int radix,int fld,bool bNeg) ^~~~~ In file included from ../../../src/gmxlib/gmx_fatal.c:50: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/gmxlib/gmx_fatal.c:46: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o enxio.lo ../../../src/gmxlib/enxio.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/enxio.c -fPIC -DPIC -o .libs/enxio.o ../../../src/gmxlib/enxio.c: In function 'empty_file': ../../../src/gmxlib/enxio.c:220:8: warning: variable 'ret' set but not used [-Wunused-but-set-variable] int ret; ^~~ ../../../src/gmxlib/enxio.c: In function 'get_enx_state': ../../../src/gmxlib/enxio.c:443:16: warning: unused variable 'pcouplmu_nm' [-Wunused-variable] static char *pcouplmu_nm[] = { ^~~~~~~~~~~ At top level: ../../../src/gmxlib/enxio.c:443:16: warning: 'pcouplmu_nm' defined but not used [-Wunused-variable] In file included from ../../../src/gmxlib/enxio.c:46: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/gmxlib/enxio.c:46: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ewald_util.lo ../../../src/gmxlib/ewald_util.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/ewald_util.c -fPIC -DPIC -o .libs/ewald_util.o In file included from ../../../src/gmxlib/ewald_util.c:43: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/gmxlib/ewald_util.c:43: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ffscanf.lo ../../../src/gmxlib/ffscanf.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/ffscanf.c -fPIC -DPIC -o .libs/ffscanf.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o confio.lo ../../../src/gmxlib/confio.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/confio.c -fPIC -DPIC -o .libs/confio.o ../../../src/gmxlib/confio.c: In function 'read_espresso_conf': ../../../src/gmxlib/confio.c:448:21: warning: unused variable 'npar' [-Wunused-variable] int natoms,level,npar,r,nprop,p,i,m; ^~~~ ../../../src/gmxlib/confio.c:448:8: warning: unused variable 'natoms' [-Wunused-variable] int natoms,level,npar,r,nprop,p,i,m; ^~~~~~ ../../../src/gmxlib/confio.c: In function 'read_stx_conf': ../../../src/gmxlib/confio.c:1298:14: warning: unused variable 'd' [-Wunused-variable] real d,r1,r2; ^ ../../../src/gmxlib/confio.c:1293:14: warning: unused variable 'buf' [-Wunused-variable] char buf[256]; ^~~ At top level: ../../../src/gmxlib/confio.c:864:13: warning: 'get_conf' defined but not used [-Wunused-function] static void get_conf(FILE *in, char *title, int *natoms, ^~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/gmxlib/confio.c:59: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/gmxlib/confio.c:57: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/gmxlib/confio.c:54: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/gmxlib/confio.c:49: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/gmxlib/confio.c:49: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ ../../../src/gmxlib/confio.c: In function 'write_hconf_box': ../../../src/gmxlib/confio.c:983:20: warning: '%d' directive writing between 2 and 10 bytes into a region of size between 7 and 75 [-Wformat-overflow=] sprintf(format,"%%%d.%df%%%d.%df%%%d.%df" ^~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../src/gmxlib/confio.c:984:17: note: format string is defined here "%%%d.%df%%%d.%df%%%d.%df%%%d.%df%%%d.%df%%%d.%df\n", ^~ ../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [10, 2147483647] sprintf(format,"%%%d.%df%%%d.%df%%%d.%df" ^~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [5, 2147483647] ../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [10, 2147483647] ../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [5, 2147483647] ../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [10, 2147483647] ../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [5, 2147483647] ../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [10, 2147483647] ../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [5, 2147483647] ../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [10, 2147483647] ../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [5, 2147483647] In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../src/gmxlib/confio.c:41: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 56 and 209 bytes into a destination of size 100 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ifunc.lo ../../../src/gmxlib/ifunc.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/ifunc.c -fPIC -DPIC -o .libs/ifunc.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o cinvsqrtdata.lo ../../../src/gmxlib/cinvsqrtdata.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/cinvsqrtdata.c -fPIC -DPIC -o .libs/cinvsqrtdata.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o futil.lo ../../../src/gmxlib/futil.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/futil.c -fPIC -DPIC -o .libs/futil.o ../../../src/gmxlib/futil.c: In function 'ffopen': ../../../src/gmxlib/futil.c:287:18: warning: unused variable 'bf' [-Wunused-variable] char buf[256],*bf,*bufsize=0,*ptr; ^~ ../../../src/gmxlib/futil.c: In function 'get_libdir': ../../../src/gmxlib/futil.c:397:22: warning: variable 'pdum' set but not used [-Wunused-but-set-variable] char *dir,*ptr,*s,*pdum; ^~~~ ../../../src/gmxlib/futil.c:395:8: warning: unused variable 'test_file' [-Wunused-variable] char test_file[MAX_PATHBUF]; ^~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/gmxlib/futil.c:53: At top level: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ ../../../src/gmxlib/futil.c: In function 'ffopen': ../../../src/gmxlib/futil.c:187:28: warning: '%s' directive writing up to 255 bytes into a region of size 244 [-Wformat-overflow=] sprintf(buf,"gunzip -c < %s",fn); ^~ ../../../src/gmxlib/futil.c:329:12: ff=gunzip(buf,mode); ~~~ In file included from /usr/include/stdio.h:862, from ../../../src/gmxlib/futil.c:41: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 13 and 268 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../src/gmxlib/futil.c:173:32: warning: '%s' directive writing up to 255 bytes into a region of size 240 [-Wformat-overflow=] sprintf(buf,"uncompress -c < %s",fn); ^~ ../../../src/gmxlib/futil.c:324:21: ff=uncompress(buf,mode); ~~~ In file included from /usr/include/stdio.h:862, from ../../../src/gmxlib/futil.c:41: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 17 and 272 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gbutil.lo ../../../src/gmxlib/gbutil.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/gbutil.c -fPIC -DPIC -o .libs/gbutil.o In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/gmxlib/gbutil.c:45: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/gmxlib/gbutil.c:43: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/gmxlib/gbutil.c:43: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o macros.lo ../../../src/gmxlib/macros.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/macros.c -fPIC -DPIC -o .libs/macros.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o invblock.lo ../../../src/gmxlib/invblock.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/invblock.c -fPIC -DPIC -o .libs/invblock.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o filenm.lo ../../../src/gmxlib/filenm.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/filenm.c -fPIC -DPIC -o .libs/filenm.o ../../../src/gmxlib/filenm.c: In function 'add_suffix_to_output_names': ../../../src/gmxlib/filenm.c:811:12: warning: unused variable 'pos' [-Wunused-variable] int i,j,pos; ^~~ In file included from ../../../include/wman.h:44, from ../../../src/gmxlib/filenm.c:48: At top level: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ ../../../src/gmxlib/filenm.c: In function 'add_suffix_to_output_names': ../../../src/gmxlib/filenm.c:825:27: warning: '.' directive writing 1 byte into a region of size between 0 and 4095 [-Wformat-overflow=] sprintf(newname,"%s.%s.%s",buf,suffix,extpos+1); ^ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../src/gmxlib/filenm.c:41: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 3 or more bytes (assuming 4098) into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sparsematrix.lo ../../../src/gmxlib/sparsematrix.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/sparsematrix.c -fPIC -DPIC -o .libs/sparsematrix.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmxfio.lo ../../../src/gmxlib/gmxfio.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/gmxfio.c -fPIC -DPIC -o .libs/gmxfio.o ../../../src/gmxlib/gmxfio.c: In function 'gmx_fio_fopen': ../../../src/gmxlib/gmxfio.c:803:8: warning: unused variable 'fp' [-Wunused-variable] FILE *fp; ^~ ../../../src/gmxlib/gmxfio.c: In function 'gmx_fio_get_output_file_positions': ../../../src/gmxlib/gmxfio.c:885:27: warning: unused variable 'pos' [-Wunused-variable] long pos; ^~~ ../../../src/gmxlib/gmxfio.c:884:34: warning: unused variable 'pos_lo' [-Wunused-variable] int pos_hi,pos_lo; ^~~~~~ ../../../src/gmxlib/gmxfio.c:884:27: warning: unused variable 'pos_hi' [-Wunused-variable] int pos_hi,pos_lo; ^~~~~~ ../../../src/gmxlib/gmxfio.c:883:36: warning: unused variable 'rc' [-Wunused-variable] int i,nfiles,rc,nalloc; ^~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o maths.lo ../../../src/gmxlib/maths.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/maths.c -fPIC -DPIC -o .libs/maths.o In file included from ../../../src/gmxlib/maths.c:43: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o main.lo ../../../src/gmxlib/main.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/main.c -fPIC -DPIC -o .libs/main.o ../../../src/gmxlib/main.c: In function 'par_fn': ../../../src/gmxlib/main.c:68:7: warning: unused variable 'n' [-Wunused-variable] int n; ^ ../../../src/gmxlib/main.c: In function 'gmx_log_open': ../../../src/gmxlib/main.c:124:12: warning: unused variable 'testlen' [-Wunused-variable] int len,testlen,pid; ^~~~~~~ ../../../src/gmxlib/main.c: In function 'init_multisystem': ../../../src/gmxlib/main.c:235:8: warning: unused variable 'rank' [-Wunused-variable] int *rank; ^~~~ ../../../src/gmxlib/main.c: In function 'init_par': ../../../src/gmxlib/main.c:309:13: warning: unused variable 'i' [-Wunused-variable] int i; ^ ../../../src/gmxlib/main.c:308:15: warning: variable 'argv' set but not used [-Wunused-but-set-variable] char **argv; ^~~~ In file included from ../../../include/pull.h:44, from ../../../include/mdrun.h:56, from ../../../src/gmxlib/main.c:52: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../include/pull.h:44, from ../../../include/mdrun.h:56, from ../../../src/gmxlib/main.c:52: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/mdrun.h:50, from ../../../src/gmxlib/main.c:52: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o index.lo ../../../src/gmxlib/index.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/index.c -fPIC -DPIC -o .libs/index.o ../../../src/gmxlib/index.c: In function 'analyse_prot': ../../../src/gmxlib/index.c:298:15: warning: unused variable 'nnpres' [-Wunused-variable] int nra,nnpres,npres; ^~~~~~ ../../../src/gmxlib/index.c: In function 'init_index': ../../../src/gmxlib/index.c:532:19: warning: variable 'nread' set but not used [-Wunused-but-set-variable] int i,j,ng,nread; ^~~~~ In file included from ../../../src/gmxlib/index.c:51: At top level: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/gmxlib/index.c:48: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o bondfree.lo ../../../src/gmxlib/bondfree.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/bondfree.c -fPIC -DPIC -o .libs/bondfree.o ../../../src/gmxlib/bondfree.c: In function 'FENE_bonds': ../../../src/gmxlib/bondfree.c:220:9: warning: unused variable 'dr' [-Wunused-variable] real dr,dr2,bm2,omdr2obm2,fbond,vbond,fij,vtot; ^~ ../../../src/gmxlib/bondfree.c: In function 'do_1_thole': ../../../src/gmxlib/bondfree.c:534:20: warning: unused variable 'r12n' [-Wunused-variable] real r12sq,r12_1,r12n,r12bar,v0,v1,fscal,ebar,fff; ^~~~ ../../../src/gmxlib/bondfree.c: In function 'posres': ../../../src/gmxlib/bondfree.c:1136:19: warning: unused variable 'fc' [-Wunused-variable] real v,vtot,fm,*fc; ^~ ../../../src/gmxlib/bondfree.c:1134:22: warning: unused variable 'ki' [-Wunused-variable] int i,ai,m,d,type,ki,npbcdim=0; ^~ ../../../src/gmxlib/bondfree.c: In function 'cross_bond_angle': ../../../src/gmxlib/bondfree.c:1687:32: warning: variable 't3' set but not used [-Wunused-but-set-variable] int i,ai,aj,ak,type,m,t1,t2,t3; ^~ ../../../src/gmxlib/bondfree.c: In function 'bonded_tab': ../../../src/gmxlib/bondfree.c:1762:10: warning: unused variable 'f' [-Wunused-variable] real v,f,dvdl; ^ ../../../src/gmxlib/bondfree.c:1762:8: warning: unused variable 'v' [-Wunused-variable] real v,f,dvdl; ^ ../../../src/gmxlib/bondfree.c: In function 'tab_angles': ../../../src/gmxlib/bondfree.c:1887:12: warning: unused variable 'snt' [-Wunused-variable] real snt,st,sth; ^~~ In file included from ../../../src/gmxlib/bondfree.c:56: At top level: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../src/gmxlib/bondfree.c:42: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/gmxlib/bondfree.c:42: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o names.lo ../../../src/gmxlib/names.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/names.c -fPIC -DPIC -o .libs/names.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o mtxio.lo ../../../src/gmxlib/mtxio.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/mtxio.c -fPIC -DPIC -o .libs/mtxio.o ../../../src/gmxlib/mtxio.c: In function 'gmx_mtxio_write': ../../../src/gmxlib/mtxio.c:90:13: warning: variable 'xd' set but not used [-Wunused-but-set-variable] XDR * xd; ^~ ../../../src/gmxlib/mtxio.c: In function 'gmx_mtxio_read': ../../../src/gmxlib/mtxio.c:164:13: warning: variable 'xd' set but not used [-Wunused-but-set-variable] XDR * xd; ^~ In file included from ../../../src/gmxlib/mtxio.c:48: At top level: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o orires.lo ../../../src/gmxlib/orires.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/orires.c -fPIC -DPIC -o .libs/orires.o ../../../src/gmxlib/orires.c: In function 'init_orires': ../../../src/gmxlib/orires.c:59:26: warning: unused variable 'nr' [-Wunused-variable] int i,j,d,ex,nmol,nr,*nr_ex; ^~ In file included from ../../../src/gmxlib/orires.c:49: At top level: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/gmxlib/orires.c:43: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/gmxlib/orires.c:43: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o network.lo ../../../src/gmxlib/network.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/network.c -fPIC -DPIC -o .libs/network.o ../../../src/gmxlib/network.c: In function 'gmx_mpi_initialized': ../../../src/gmxlib/network.c:57:7: warning: unused variable 'n' [-Wunused-variable] int n; ^ ../../../src/gmxlib/network.c: In function 'gmx_setup_nodecomm': ../../../src/gmxlib/network.c:245:40: warning: unused variable 'ni' [-Wunused-variable] int n,rank,resultlen,hostnum,i,j,ng,ni; ^~ ../../../src/gmxlib/network.c:245:37: warning: unused variable 'ng' [-Wunused-variable] int n,rank,resultlen,hostnum,i,j,ng,ni; ^~ ../../../src/gmxlib/network.c:245:35: warning: unused variable 'j' [-Wunused-variable] int n,rank,resultlen,hostnum,i,j,ng,ni; ^ ../../../src/gmxlib/network.c:245:33: warning: unused variable 'i' [-Wunused-variable] int n,rank,resultlen,hostnum,i,j,ng,ni; ^ ../../../src/gmxlib/network.c:245:25: warning: unused variable 'hostnum' [-Wunused-variable] int n,rank,resultlen,hostnum,i,j,ng,ni; ^~~~~~~ ../../../src/gmxlib/network.c:245:15: warning: unused variable 'resultlen' [-Wunused-variable] int n,rank,resultlen,hostnum,i,j,ng,ni; ^~~~~~~~~ ../../../src/gmxlib/network.c:245:10: warning: unused variable 'rank' [-Wunused-variable] int n,rank,resultlen,hostnum,i,j,ng,ni; ^~~~ ../../../src/gmxlib/network.c:245:8: warning: unused variable 'n' [-Wunused-variable] int n,rank,resultlen,hostnum,i,j,ng,ni; ^ ../../../src/gmxlib/network.c: In function 'gmx_finalize': ../../../src/gmxlib/network.c:522:7: warning: unused variable 'ret' [-Wunused-variable] int ret; ^~~ In file included from ../../../include/statutil.h:51, from ../../../src/gmxlib/network.c:46: At top level: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/gmxlib/network.c:45: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o mtop_util.lo ../../../src/gmxlib/mtop_util.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/mtop_util.c -fPIC -DPIC -o .libs/mtop_util.o ../../../src/gmxlib/mtop_util.c: In function 'gmx_mtop_atomnr_to_molblock_ind': ../../../src/gmxlib/mtop_util.c:105:14: warning: unused variable 'atoms' [-Wunused-variable] t_atoms *atoms; ^~~~~ ../../../src/gmxlib/mtop_util.c: In function 'gmx_mtop_atominfo_global': ../../../src/gmxlib/mtop_util.c:132:21: warning: unused variable 'molb' [-Wunused-variable] gmx_molblock_t *molb; ^~~~ ../../../src/gmxlib/mtop_util.c: In function 'gmx_mtop_ilistloop_all_next': ../../../src/gmxlib/mtop_util.c:384:21: warning: unused variable 'molb' [-Wunused-variable] gmx_molblock_t *molb; ^~~~ ../../../src/gmxlib/mtop_util.c: In function 'gmx_mtop_global_cgs': ../../../src/gmxlib/mtop_util.c:438:14: warning: unused variable 'atoms' [-Wunused-variable] t_atoms *atoms; ^~~~~ ../../../src/gmxlib/mtop_util.c: In function 'gen_local_top': ../../../src/gmxlib/mtop_util.c:669:31: warning: unused variable 'mt' [-Wunused-variable] int mb,srcnr,destnr,ftype,mt,natoms,nposre_old; ^~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o mvdata.lo ../../../src/gmxlib/mvdata.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/mvdata.c -fPIC -DPIC -o .libs/mvdata.o ../../../src/gmxlib/mvdata.c: In function 'bc_atoms': ../../../src/gmxlib/mvdata.c:147:7: warning: unused variable 'dummy' [-Wunused-variable] int dummy; ^~~~~ ../../../src/gmxlib/mvdata.c: In function 'bc_groups': ../../../src/gmxlib/mvdata.c:162:7: warning: unused variable 'dummy' [-Wunused-variable] int dummy; ^~~~~ ../../../src/gmxlib/mvdata.c: In function 'bc_ffparams': ../../../src/gmxlib/mvdata.c:290:7: warning: unused variable 'i' [-Wunused-variable] int i; ^ ../../../src/gmxlib/mvdata.c: In function 'bc_molblock': ../../../src/gmxlib/mvdata.c:427:8: warning: unused variable 'bAlloc' [-Wunused-variable] bool bAlloc=TRUE; ^~~~~~ At top level: ../../../src/gmxlib/mvdata.c:275:13: warning: 'bc_idef' defined but not used [-Wunused-function] static void bc_idef(const t_commrec *cr,t_idef *idef) ^~~~~~~ In file included from ../../../src/gmxlib/mvdata.c:50: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/gmxlib/mvdata.c:50: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nrama.lo ../../../src/gmxlib/nrama.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/nrama.c -fPIC -DPIC -o .libs/nrama.o ../../../src/gmxlib/nrama.c: In function 'get_dih2': ../../../src/gmxlib/nrama.c:179:11: warning: unused variable 'found' [-Wunused-variable] int found,**ff,thisff[NPP]; ^~~~~ ../../../src/gmxlib/nrama.c: In function 'init_rama': ../../../src/gmxlib/nrama.c:307:10: warning: unused variable 'ePBC' [-Wunused-variable] int ePBC; ^~~~ At top level: ../../../src/gmxlib/nrama.c:176:13: warning: 'get_dih2' defined but not used [-Wunused-function] static void get_dih2(t_xrama *xr,t_functype functype[], ^~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../include/nrama.h:45, from ../../../src/gmxlib/nrama.c:49: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ ../../../src/gmxlib/nrama.c: In function 'init_rama': ../../../src/gmxlib/nrama.c:125:21: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(buf,"%s-%d",*atoms->resname[atoms->atom[ff[1]].resnr], ^ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../src/gmxlib/nrama.c:41: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 3 or more bytes (assuming 13) into a destination of size 12 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o matio.lo ../../../src/gmxlib/matio.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/matio.c -fPIC -DPIC -o .libs/matio.o ../../../src/gmxlib/matio.c: In function 'write_xpm_map_split': ../../../src/gmxlib/matio.c:636:16: warning: unused variable 'fac' [-Wunused-variable] real r,g,b,fac; ^~~ ../../../src/gmxlib/matio.c:636:14: warning: unused variable 'b' [-Wunused-variable] real r,g,b,fac; ^ ../../../src/gmxlib/matio.c:636:12: warning: unused variable 'g' [-Wunused-variable] real r,g,b,fac; ^ ../../../src/gmxlib/matio.c:636:10: warning: unused variable 'r' [-Wunused-variable] real r,g,b,fac; ^ ../../../src/gmxlib/matio.c:635:10: warning: unused variable 'i' [-Wunused-variable] int i,ntot; ^ In file included from ../../../src/gmxlib/matio.c:50: At top level: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/gmxlib/matio.c:48: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o mshift.lo ../../../src/gmxlib/mshift.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/mshift.c -fPIC -DPIC -o .libs/mshift.o ../../../src/gmxlib/mshift.c: In function 'compact_graph': ../../../src/gmxlib/mshift.c:243:12: warning: unused variable 'e' [-Wunused-variable] atom_id *e; ^ ../../../src/gmxlib/mshift.c:242:9: warning: unused variable 'j' [-Wunused-variable] int i,j,n,max_nedge; ^ ../../../src/gmxlib/mshift.c: In function 'mk_graph_ilist': ../../../src/gmxlib/mshift.c:307:13: warning: variable 'nbtot' set but not used [-Wunused-but-set-variable] int i,nbtot; ^~~~~ In file included from ../../../src/gmxlib/mshift.c:46: At top level: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/gmxlib/mshift.c:44: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/gmxlib/mshift.c:44: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nrjac.lo ../../../src/gmxlib/nrjac.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/nrjac.c -fPIC -DPIC -o .libs/nrjac.o In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/gmxlib/nrjac.c:44: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nrnb.lo ../../../src/gmxlib/nrnb.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/nrnb.c -fPIC -DPIC -o .libs/nrnb.o ../../../src/gmxlib/nrnb.c: In function 'pr_load': ../../../src/gmxlib/nrnb.c:473:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(j=0; (j 0)?"d":"",'X'+m); ^ In file included from /usr/include/stdio.h:862, from ../../../src/mdlib/pull.c:42: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 4 and 14 bytes into a destination of size 10 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ns.lo ../../../src/mdlib/ns.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/ns.c -fPIC -DPIC -o .libs/ns.o ../../../src/mdlib/ns.c: In function 'new_i_nblist': ../../../src/mdlib/ns.c:394:20: warning: unused variable 'nshift' [-Wunused-variable] int i,k,nri,nshift; ^~~~~~ ../../../src/mdlib/ns.c:394:14: warning: unused variable 'k' [-Wunused-variable] int i,k,nri,nshift; ^ ../../../src/mdlib/ns.c:394:12: warning: unused variable 'i' [-Wunused-variable] int i,k,nri,nshift; ^ ../../../src/mdlib/ns.c: In function 'put_in_list': ../../../src/mdlib/ns.c:546:25: warning: unused variable 'rlj' [-Wunused-variable] real qi,qiB,qq,rlj; ^~~ ../../../src/mdlib/ns.c:546:22: warning: unused variable 'qq' [-Wunused-variable] real qi,qiB,qq,rlj; ^~ ../../../src/mdlib/ns.c:541:23: warning: unused variable 'len' [-Wunused-variable] int i0,nicg,len; ^~~ ../../../src/mdlib/ns.c:539:39: warning: unused variable 'ind_ij' [-Wunused-variable] int i,j,jcg,igid,gid,nbl_ind,ind_ij; ^~~~~~ ../../../src/mdlib/ns.c: In function 'ns_inner_tric': ../../../src/mdlib/ns.c:1283:15: warning: unused variable 'nsbuf' [-Wunused-variable] t_ns_buf *nsbuf; ^~~~~ ../../../src/mdlib/ns.c: In function 'ns_inner_rect': ../../../src/mdlib/ns.c:1314:15: warning: unused variable 'nsbuf' [-Wunused-variable] t_ns_buf *nsbuf; ^~~~~ ../../../src/mdlib/ns.c: In function 'ns_simple_core': ../../../src/mdlib/ns.c:1365:38: warning: unused variable 'nri' [-Wunused-variable] int nsearch,icg,jcg,igid,i0,nri,nn; ^~~ ../../../src/mdlib/ns.c:1365:35: warning: unused variable 'i0' [-Wunused-variable] int nsearch,icg,jcg,igid,i0,nri,nn; ^~ ../../../src/mdlib/ns.c:1365:26: warning: unused variable 'jcg' [-Wunused-variable] int nsearch,icg,jcg,igid,i0,nri,nn; ^~~ ../../../src/mdlib/ns.c: In function 'nsgrid_core': ../../../src/mdlib/ns.c:1674:58: warning: unused variable 'dcz' [-Wunused-variable] real r2,rs2,rvdw2,rcoul2,rm2,rl2,XI,YI,ZI,dcx,dcy,dcz,tmp1,tmp2; ^~~ ../../../src/mdlib/ns.c:1674:54: warning: unused variable 'dcy' [-Wunused-variable] real r2,rs2,rvdw2,rcoul2,rm2,rl2,XI,YI,ZI,dcx,dcy,dcz,tmp1,tmp2; ^~~ ../../../src/mdlib/ns.c:1674:50: warning: unused variable 'dcx' [-Wunused-variable] real r2,rs2,rvdw2,rcoul2,rm2,rl2,XI,YI,ZI,dcx,dcy,dcz,tmp1,tmp2; ^~~ ../../../src/mdlib/ns.c:1673:13: warning: unused variable 'xi' [-Wunused-variable] rvec xi,*cgcm,grid_offset; ^~ ../../../src/mdlib/ns.c:1669:42: warning: unused variable 'nri' [-Wunused-variable] int cg0,cg1,icg=-1,cgsnr,i0,igid,nri,naaj,max_jcg; ^~~ ../../../src/mdlib/ns.c:1666:45: warning: variable 'grid_z' set but not used [-Wunused-but-set-variable] real gridx,gridy,gridz,grid_x,grid_y,grid_z; ^~~~~~ ../../../src/mdlib/ns.c: In function 'init_ns': ../../../src/mdlib/ns.c:2177:11: warning: unused variable 'ptr' [-Wunused-variable] char *ptr; ^~~ ../../../src/mdlib/ns.c: In function 'search_neighbours': ../../../src/mdlib/ns.c:2280:23: warning: unused variable 'cg_end' [-Wunused-variable] int cg_start,cg_end,start,end; ^~~~~~ ../../../src/mdlib/ns.c:2280:14: warning: unused variable 'cg_start' [-Wunused-variable] int cg_start,cg_end,start,end; ^~~~~~~~ ../../../src/mdlib/ns.c:2279:15: warning: unused variable 'i_egp_flags' [-Wunused-variable] bool *i_egp_flags; ^~~~~~~~~~~ ../../../src/mdlib/ns.c:2278:15: warning: unused variable 'ptr' [-Wunused-variable] char *ptr; ^~~ ../../../src/mdlib/ns.c:2274:16: warning: unused variable 'j' [-Wunused-variable] int i,j,m,ngid; ^ ../../../src/mdlib/ns.c:2274:14: warning: unused variable 'i' [-Wunused-variable] int i,j,m,ngid; ^ In file included from ../../../src/mdlib/ns.c:54: At top level: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../src/mdlib/ns.c:51: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../src/mdlib/ns.c:50: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o stat.lo ../../../src/mdlib/stat.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/stat.c -fPIC -DPIC -o .libs/stat.o In file included from ../../../include/statutil.h:51, from ../../../src/mdlib/stat.c:63: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/mdlib/stat.c:53: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../src/mdlib/stat.c:49: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/mdlib/stat.c:49: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o tgroup.lo ../../../src/mdlib/tgroup.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/tgroup.c -fPIC -DPIC -o .libs/tgroup.o ../../../src/mdlib/tgroup.c: In function 'init_grptcstat': ../../../src/mdlib/tgroup.c:57:9: warning: unused variable 'j' [-Wunused-variable] int i,j; ^ At top level: ../../../src/mdlib/tgroup.c:141:13: warning: 'accumulate_ekin' defined but not used [-Wunused-function] static void accumulate_ekin(t_commrec *cr,t_grpopts *opts, ^~~~~~~~~~~~~~~ In file included from ../../../include/update.h:48, from ../../../src/mdlib/tgroup.c:51: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../src/mdlib/tgroup.c:48: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/mdlib/tgroup.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o minimize.lo ../../../src/mdlib/minimize.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/minimize.c -fPIC -DPIC -o .libs/minimize.o ../../../src/mdlib/minimize.c: In function 'get_f_norm_max': ../../../src/mdlib/minimize.c:153:14: warning: unused variable 'fmax2_0' [-Wunused-variable] real fmax2,fmax2_0,fam; ^~~~~~~ ../../../src/mdlib/minimize.c: In function 'evaluate_energy': ../../../src/mdlib/minimize.c:573:12: warning: unused variable 'state' [-Wunused-variable] t_state *state; ^~~~~ ../../../src/mdlib/minimize.c: In function 'do_cg': ../../../src/mdlib/minimize.c:813:10: warning: unused variable 'terminate' [-Wunused-variable] real terminate=0; ^~~~~~~~~ ../../../src/mdlib/minimize.c:798:26: warning: unused variable 'sum' [-Wunused-variable] double gpa,gpb,gpc,tmp,sum[2],minstep; ^~~ ../../../src/mdlib/minimize.c:797:28: warning: unused variable 'sfm' [-Wunused-variable] rvec *f_global,*p,*sf,*sfm; ^~~ ../../../src/mdlib/minimize.c: In function 'do_lbfgs': ../../../src/mdlib/minimize.c:1329:10: warning: unused variable 'terminate' [-Wunused-variable] real terminate; ^~~~~~~~~ ../../../src/mdlib/minimize.c:1320:20: warning: variable 'first' set but not used [-Wunused-but-set-variable] bool converged,first; ^~~~~ ../../../src/mdlib/minimize.c: In function 'do_steep': ../../../src/mdlib/minimize.c:1957:10: warning: unused variable 'terminate' [-Wunused-variable] real terminate=0; ^~~~~~~~~ ../../../src/mdlib/minimize.c:1946:16: warning: unused variable 'dvdlambda' [-Wunused-variable] real ustep,dvdlambda,fnormn; ^~~~~~~~~ ../../../src/mdlib/minimize.c:1945:19: warning: unused variable 'constepsize' [-Wunused-variable] real stepsize,constepsize; ^~~~~~~~~~~ ../../../src/mdlib/minimize.c: In function 'do_nm': ../../../src/mdlib/minimize.c:2163:22: warning: unused variable 'fmax' [-Wunused-variable] real fnorm,fmax; ^~~~ ../../../src/mdlib/minimize.c:2163:16: warning: unused variable 'fnorm' [-Wunused-variable] real fnorm,fmax; ^~~~~ ../../../src/mdlib/minimize.c:2151:16: warning: unused variable 'nfmax' [-Wunused-variable] int nfmax,count; ^~~~~ ../../../src/mdlib/minimize.c:2149:16: warning: unused variable 'bNS' [-Wunused-variable] bool bNS; ^~~ ../../../src/mdlib/minimize.c:2148:18: warning: variable 'lambda' set but not used [-Wunused-but-set-variable] real t,lambda,t0,lam0; ^~~~~~ ../../../src/mdlib/minimize.c: In function 'do_tpi': ../../../src/mdlib/minimize.c:2419:18: warning: unused variable 'end' [-Wunused-variable] int i,start,end; ^~~ ../../../src/mdlib/minimize.c:2419:12: warning: unused variable 'start' [-Wunused-variable] int i,start,end; ^~~~~ ../../../src/mdlib/minimize.c:2404:15: warning: unused variable 'TPI' [-Wunused-variable] const char *TPI="Test Particle Insertion"; ^~~ At top level: ../../../src/mdlib/minimize.c:515:13: warning: 'do_x_sub' defined but not used [-Wunused-function] static void do_x_sub(t_commrec *cr,int n,rvec *x1,rvec *x2,real a,rvec *f) ^~~~~~~~ ../../../src/mdlib/minimize.c:493:13: warning: 'do_x_step' defined but not used [-Wunused-function] static void do_x_step(t_commrec *cr,int n,rvec *x1,real a,rvec *f,rvec *x2) ^~~~~~~~~ In file included from ../../../include/pme.h:46, from ../../../src/mdlib/minimize.c:83: ../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function] static t_complex cdiv(t_complex teller,t_complex noemer) ^~~~ ../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function] static t_complex csub(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function] static t_complex cadd(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function] static t_complex rcexp(real r) ^~~~~ ../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable] static t_complex cnul = { 0.0, 0.0 }; ^~~~ In file included from ../../../include/statutil.h:51, from ../../../src/mdlib/minimize.c:63: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../include/pull.h:44, from ../../../include/update.h:49, from ../../../src/mdlib/minimize.c:59: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../include/pull.h:44, from ../../../include/update.h:49, from ../../../src/mdlib/minimize.c:59: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/mdlib/minimize.c:47: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o tables.lo ../../../src/mdlib/tables.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/tables.c -fPIC -DPIC -o .libs/tables.o ../../../src/mdlib/tables.c: In function 'done_tabledata': ../../../src/mdlib/tables.c:470:7: warning: unused variable 'i' [-Wunused-variable] int i; ^ ../../../src/mdlib/tables.c: In function 'make_tables': ../../../src/mdlib/tables.c:835:17: warning: unused variable 'j' [-Wunused-variable] int i,j,k,nx,nx0,tabsel[etiNR]; ^ ../../../src/mdlib/tables.c: In function 'make_bonded_table': ../../../src/mdlib/tables.c:950:10: warning: variable 'start' set but not used [-Wunused-but-set-variable] double start; ^~~~~ At top level: ../../../src/mdlib/tables.c:155:13: warning: 'splint' defined but not used [-Wunused-function] static void splint(real xa[],real ya[],real y2a[], ^~~~~~ In file included from ../../../src/mdlib/tables.c:51: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../src/mdlib/tables.c:47: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/mdlib/tables.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sim_util.lo ../../../src/mdlib/sim_util.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/sim_util.c -fPIC -DPIC -o .libs/sim_util.o ../../../src/mdlib/sim_util.c: In function 'calc_virial': ../../../src/mdlib/sim_util.c:250:10: warning: unused variable 'virtest' [-Wunused-variable] tensor virtest; ^~~~~~~ ../../../src/mdlib/sim_util.c:249:9: warning: unused variable 'j' [-Wunused-variable] int i,j; ^ ../../../src/mdlib/sim_util.c: In function 'do_force': ../../../src/mdlib/sim_util.c:357:24: warning: unused variable 'cycles_pme' [-Wunused-variable] float cycles_ppdpme,cycles_pme,cycles_force; ^~~~~~~~~~ ../../../src/mdlib/sim_util.c:355:10: warning: unused variable 'e' [-Wunused-variable] real e,v,dvdl; ^ ../../../src/mdlib/sim_util.c:354:10: warning: unused variable 'boxs' [-Wunused-variable] matrix boxs; ^~~~ ../../../src/mdlib/sim_util.c:353:57: warning: unused variable 'bBS' [-Wunused-variable] bool bSepDVDL,bStateChanged,bNS,bFillGrid,bCalcCGCM,bBS,bDoForces; ^~~ ../../../src/mdlib/sim_util.c:348:15: warning: unused variable 'box_size' [-Wunused-variable] static rvec box_size; ^~~~~~~~ ../../../src/mdlib/sim_util.c: In function 'calc_enervirdiff': ../../../src/mdlib/sim_util.c:823:13: warning: variable 'r1' set but not used [-Wunused-but-set-variable] double r0,r1,r,rc3,rc9,ea,eb,ec,pa,pb,pc,pd; ^~ ../../../src/mdlib/sim_util.c: In function 'init_md': ../../../src/mdlib/sim_util.c:1222:13: warning: unused variable 'mod' [-Wunused-variable] real tmpt,mod; ^~~ ../../../src/mdlib/sim_util.c:1222:8: warning: unused variable 'tmpt' [-Wunused-variable] real tmpt,mod; ^~~~ ../../../src/mdlib/sim_util.c:1221:12: warning: unused variable 'n' [-Wunused-variable] int i,j,n; ^ ../../../src/mdlib/sim_util.c:1221:10: warning: unused variable 'j' [-Wunused-variable] int i,j,n; ^ At top level: ../../../src/mdlib/sim_util.c:348:15: warning: 'box_size' defined but not used [-Wunused-variable] static rvec box_size; ^~~~~~~~ In file included from ../../../src/mdlib/sim_util.c:78: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/pme.h:46, from ../../../src/mdlib/sim_util.c:68: ../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function] static t_complex cdiv(t_complex teller,t_complex noemer) ^~~~ ../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function] static t_complex csub(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function] static t_complex cadd(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function] static t_complex rcexp(real r) ^~~~~ ../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable] static t_complex cnul = { 0.0, 0.0 }; ^~~~ In file included from ../../../src/mdlib/sim_util.c:57: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/mdlib/sim_util.c:57: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o vcm.lo ../../../src/mdlib/vcm.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/vcm.c -fPIC -DPIC -o .libs/vcm.o ../../../src/mdlib/vcm.c: In function 'calc_vcm_grp': ../../../src/mdlib/vcm.c:122:28: warning: unused variable 'zz' [-Wunused-variable] real m0,xx,xy,xz,yy,yz,zz; ^~ ../../../src/mdlib/vcm.c:122:25: warning: unused variable 'yz' [-Wunused-variable] real m0,xx,xy,xz,yy,yz,zz; ^~ ../../../src/mdlib/vcm.c:122:22: warning: unused variable 'yy' [-Wunused-variable] real m0,xx,xy,xz,yy,yz,zz; ^~ ../../../src/mdlib/vcm.c:122:19: warning: unused variable 'xz' [-Wunused-variable] real m0,xx,xy,xz,yy,yz,zz; ^~ ../../../src/mdlib/vcm.c:122:16: warning: unused variable 'xy' [-Wunused-variable] real m0,xx,xy,xz,yy,yz,zz; ^~ ../../../src/mdlib/vcm.c:122:13: warning: unused variable 'xx' [-Wunused-variable] real m0,xx,xy,xz,yy,yz,zz; ^~ ../../../src/mdlib/vcm.c: In function 'do_stopcm_grp': ../../../src/mdlib/vcm.c:171:11: warning: unused variable 'tm_1' [-Wunused-variable] real tm,tm_1; ^~~~ ../../../src/mdlib/vcm.c:171:8: warning: unused variable 'tm' [-Wunused-variable] real tm,tm_1; ^~ ../../../src/mdlib/vcm.c:170:12: warning: unused variable 'm' [-Wunused-variable] int i,g,m; ^ ../../../src/mdlib/vcm.c: In function 'check_cm_grp': ../../../src/mdlib/vcm.c:250:14: warning: unused variable 'Tcm' [-Wunused-variable] tensor Icm,Tcm; ^~~ In file included from ../../../src/mdlib/vcm.c:43: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/mdlib/vcm.c:43: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o shellfc.lo ../../../src/mdlib/shellfc.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/shellfc.c -fPIC -DPIC -o .libs/shellfc.o ../../../src/mdlib/shellfc.c: In function 'predict_shells': ../../../src/mdlib/shellfc.c:115:18: warning: unused variable 'dt_3' [-Wunused-variable] real dt_1,dt_2,dt_3,fudge,tm,m1,m2,m3; ^~~~ ../../../src/mdlib/shellfc.c:115:13: warning: unused variable 'dt_2' [-Wunused-variable] real dt_1,dt_2,dt_3,fudge,tm,m1,m2,m3; ^~~~ ../../../src/mdlib/shellfc.c: In function 'init_shell_flexcon': ../../../src/mdlib/shellfc.c:197:32: warning: unused variable 'mt' [-Wunused-variable] int i,j,nmol,type,mb,mt,a_offset,cg,mol,ftype,nra; ^~ ../../../src/mdlib/shellfc.c:197:19: warning: unused variable 'nmol' [-Wunused-variable] int i,j,nmol,type,mb,mt,a_offset,cg,mol,ftype,nra; ^~~~ ../../../src/mdlib/shellfc.c: In function 'init_adir': ../../../src/mdlib/shellfc.c:694:12: warning: unused variable 'dx' [-Wunused-variable] rvec p,dx; ^~ ../../../src/mdlib/shellfc.c:694:10: warning: unused variable 'p' [-Wunused-variable] rvec p,dx; ^ ../../../src/mdlib/shellfc.c:691:13: warning: unused variable 'scale' [-Wunused-variable] real dt,scale; ^~~~~ ../../../src/mdlib/shellfc.c:690:16: warning: unused variable 'gt' [-Wunused-variable] int gf,ga,gt; ^~ ../../../src/mdlib/shellfc.c:690:13: warning: unused variable 'ga' [-Wunused-variable] int gf,ga,gt; ^~ ../../../src/mdlib/shellfc.c:690:10: warning: unused variable 'gf' [-Wunused-variable] int gf,ga,gt; ^~ ../../../src/mdlib/shellfc.c: In function 'relax_shell_flexcon': ../../../src/mdlib/shellfc.c:776:19: warning: unused variable 'g' [-Wunused-variable] int nflexcon,g,number_steps,d,Min=0,count=0; ^ ../../../src/mdlib/shellfc.c:772:10: warning: unused variable 'cbuf' [-Wunused-variable] char cbuf[56]; ^~~~ ../../../src/mdlib/shellfc.c:771:19: warning: unused variable 'xiS' [-Wunused-variable] real ftol,xiH,xiS,dum=0; ^~~ ../../../src/mdlib/shellfc.c:771:15: warning: unused variable 'xiH' [-Wunused-variable] real ftol,xiH,xiS,dum=0; ^~~ ../../../src/mdlib/shellfc.c:769:10: warning: unused variable 'dx' [-Wunused-variable] rvec dx; ^~ In file included from ../../../src/mdlib/shellfc.c:55: At top level: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/mdrun.h:50, from ../../../src/mdlib/shellfc.c:45: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../src/mdlib/shellfc.c:43: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/mdlib/shellfc.c:43: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o wall.lo ../../../src/mdlib/wall.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/wall.c -fPIC -DPIC -o .libs/wall.o ../../../src/mdlib/wall.c: In function 'do_walls': ../../../src/mdlib/wall.c:107:47: warning: unused variable 'Heps' [-Wunused-variable] real tabscale,*VFtab,rt,eps,eps2,Yt,Ft,Geps,Heps,Heps2,Fp,VV,FF; ^~~~ ../../../src/mdlib/wall.c:103:50: warning: variable 'Fwall' set but not used [-Wunused-but-set-variable] real *nbfp,lamfac,fac_d[2],fac_r[2],Cd,Cr,Vtot,Fwall[2]; ^~~~~ In file included from ../../../src/mdlib/wall.c:48: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/mdlib/wall.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/mdlib/wall.c:45: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o wnblist.lo ../../../src/mdlib/wnblist.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/wnblist.c -fPIC -DPIC -o .libs/wnblist.o ../../../src/mdlib/wnblist.c: In function 'read_nblist': ../../../src/mdlib/wnblist.c:135:27: warning: unused variable 'icmp' [-Wunused-variable] int i,ii,j,nnbl,full,icmp,nri,isolv; ^~~~ ../../../src/mdlib/wnblist.c:135:22: warning: unused variable 'full' [-Wunused-variable] int i,ii,j,nnbl,full,icmp,nri,isolv; ^~~~ ../../../src/mdlib/wnblist.c:135:17: warning: unused variable 'nnbl' [-Wunused-variable] int i,ii,j,nnbl,full,icmp,nri,isolv; ^~~~ ../../../src/mdlib/wnblist.c:134:26: warning: unused variable 'b2' [-Wunused-variable] char buf[256],b1[32],b2[32],solv[256],il_code[256]; ^~ ../../../src/mdlib/wnblist.c:134:19: warning: unused variable 'b1' [-Wunused-variable] char buf[256],b1[32],b2[32],solv[256],il_code[256]; ^~ ../../../src/mdlib/wnblist.c:133:10: warning: unused variable 'bNL' [-Wunused-variable] bool bNL; ^~~ In file included from ../../../src/mdlib/wnblist.c:44: At top level: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_parallel_3dfft.lo ../../../src/mdlib/gmx_parallel_3dfft.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/gmx_parallel_3dfft.c -fPIC -DPIC -o .libs/gmx_parallel_3dfft.o make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o update.lo ../../../src/mdlib/update.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/update.c -fPIC -DPIC -o .libs/update.o ../../../src/mdlib/update.c: In function 'update': ../../../src/mdlib/update.c:771:39: warning: unused variable 'g' [-Wunused-variable] int start,homenr,i,n,m,g; ^ ../../../src/mdlib/update.c:770:20: warning: variable 'dt_1' set but not used [-Wunused-but-set-variable] real dt_1; ^~~~ In file included from ../../../src/mdlib/update.c:62: At top level: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/update.h:48, from ../../../src/mdlib/update.c:53: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../src/mdlib/update.c:50: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/mdlib/update.c:50: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_fft.lo ../../../src/mdlib/gmx_fft.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/gmx_fft.c -fPIC -DPIC -o .libs/gmx_fft.o In file included from ../../../src/mdlib/gmx_fft.c:30: ../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function] static t_complex cdiv(t_complex teller,t_complex noemer) ^~~~ ../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function] static t_complex csub(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function] static t_complex cadd(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function] static t_complex rcexp(real r) ^~~~~ ../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable] static t_complex cnul = { 0.0, 0.0 }; ^~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o csettle.lo ../../../src/mdlib/csettle.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/csettle.c -fPIC -DPIC -o .libs/csettle.o ../../../src/mdlib/csettle.c: In function 'xshake': ../../../src/mdlib/csettle.c:183:39: warning: unused variable 'conv' [-Wunused-variable] int i,ll,ii,jj,l3,ix,iy,iz,jx,jy,jz,conv; ^~~~ ../../../src/mdlib/csettle.c: In function 'csettle': ../../../src/mdlib/csettle.c:298:10: warning: unused variable 'shakeret' [-Wunused-variable] int i, shakeret, ow1, hw2, hw3; ^~~~~~~~ In file included from ../../../src/mdlib/csettle.c:42: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/mdlib/csettle.c:42: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_wallcycle.lo ../../../src/mdlib/gmx_wallcycle.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/gmx_wallcycle.c -fPIC -DPIC -o .libs/gmx_wallcycle.o ../../../src/mdlib/gmx_wallcycle.c: In function 'wallcycle_sum': ../../../src/mdlib/gmx_wallcycle.c:163:31: warning: unused variable 'buf_all' [-Wunused-variable] double buf[ewcNR],*cyc_all,*buf_all; ^~~~~~~ ../../../src/mdlib/gmx_wallcycle.c:163:22: warning: unused variable 'cyc_all' [-Wunused-variable] double buf[ewcNR],*cyc_all,*buf_all; ^~~~~~~ ../../../src/mdlib/gmx_wallcycle.c:163:10: warning: unused variable 'buf' [-Wunused-variable] double buf[ewcNR],*cyc_all,*buf_all; ^~~ At top level: ../../../src/mdlib/gmx_wallcycle.c:59:26: warning: 'wc_barrier' defined but not used [-Wunused-variable] static bool wc_barrier=FALSE; ^~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o qmmm.lo ../../../src/mdlib/qmmm.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/qmmm.c -fPIC -DPIC -o .libs/qmmm.o ../../../src/mdlib/qmmm.c: In function 'update_QMMMrec': ../../../src/mdlib/qmmm.c:725:6: warning: unused variable 'MMatoms' [-Wunused-variable] *MMatoms; ^~~~~~~ ../../../src/mdlib/qmmm.c:721:17: warning: variable 'QMMMlist_lr' set but not used [-Wunused-but-set-variable] QMMMlist_sr,QMMMlist_lr; ^~~~~~~~~~~ At top level: ../../../src/mdlib/qmmm.c:131:12: warning: 'int_comp' defined but not used [-Wunused-function] static int int_comp(const void *a,const void *b){ ^~~~~~~~ In file included from ../../../src/mdlib/qmmm.c:60: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/mdlib/qmmm.c:49: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../src/mdlib/qmmm.c:48: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/mdlib/qmmm.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o domdec.lo ../../../src/mdlib/domdec.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/domdec.c -fPIC -DPIC -o .libs/domdec.o ../../../src/mdlib/domdec.c: In function 'dd_move_cellx': ../../../src/mdlib/domdec.c:785:41: warning: unused variable 'k' [-Wunused-variable] int d,d1,dim,dim1,pos,buf_size,i,j,k,p,npulse; ^ ../../../src/mdlib/domdec.c:785:19: warning: unused variable 'dim1' [-Wunused-variable] int d,d1,dim,dim1,pos,buf_size,i,j,k,p,npulse; ^~~~ ../../../src/mdlib/domdec.c: In function 'dd_collect_vec': ../../../src/mdlib/domdec.c:1212:11: warning: unused variable 'buf' [-Wunused-variable] rvec *buf=NULL; ^~~ ../../../src/mdlib/domdec.c:1211:18: warning: unused variable 'nalloc' [-Wunused-variable] int n,i,c,a,nalloc=0; ^~~~~~ ../../../src/mdlib/domdec.c:1211:16: warning: unused variable 'a' [-Wunused-variable] int n,i,c,a,nalloc=0; ^ ../../../src/mdlib/domdec.c:1211:14: warning: unused variable 'c' [-Wunused-variable] int n,i,c,a,nalloc=0; ^ ../../../src/mdlib/domdec.c:1211:12: warning: unused variable 'i' [-Wunused-variable] int n,i,c,a,nalloc=0; ^ ../../../src/mdlib/domdec.c:1211:10: warning: unused variable 'n' [-Wunused-variable] int n,i,c,a,nalloc=0; ^ ../../../src/mdlib/domdec.c:1210:26: warning: unused variable 'ma' [-Wunused-variable] gmx_domdec_master_t *ma; ^~ ../../../src/mdlib/domdec.c: In function 'dd_distribute_vec_scatterv': ../../../src/mdlib/domdec.c:1427:18: warning: unused variable 'nalloc' [-Wunused-variable] int n,i,c,a,nalloc=0; ^~~~~~ ../../../src/mdlib/domdec.c: In function 'gmx_ddcoord2pmeindex': ../../../src/mdlib/domdec.c:1805:28: warning: unused variable 'nc' [-Wunused-variable] ivec coords,coords_pme,nc; ^~ ../../../src/mdlib/domdec.c:1805:17: warning: unused variable 'coords_pme' [-Wunused-variable] ivec coords,coords_pme,nc; ^~~~~~~~~~ ../../../src/mdlib/domdec.c: In function 'dd_simnode2pmenode': ../../../src/mdlib/domdec.c:1874:16: warning: unused variable 'coord_pme' [-Wunused-variable] ivec coord,coord_pme; ^~~~~~~~~ ../../../src/mdlib/domdec.c:1874:10: warning: unused variable 'coord' [-Wunused-variable] ivec coord,coord_pme; ^~~~~ ../../../src/mdlib/domdec.c: In function 'receive_vir_ener': ../../../src/mdlib/domdec.c:2005:30: warning: unused variable 'rank' [-Wunused-variable] int pmenode,coords[DIM],rank; ^~~~ ../../../src/mdlib/domdec.c:2005:18: warning: unused variable 'coords' [-Wunused-variable] int pmenode,coords[DIM],rank; ^~~~~~ ../../../src/mdlib/domdec.c: In function 'make_dd_indices': ../../../src/mdlib/domdec.c:2107:11: warning: variable 'bLocalCG' set but not used [-Wunused-but-set-variable] char *bLocalCG; ^~~~~~~~ ../../../src/mdlib/domdec.c: In function 'check_bLocalCG': ../../../src/mdlib/domdec.c:2162:9: warning: unused variable 'ncg' [-Wunused-variable] int ncg,i,ngl,nerr; ^~~ ../../../src/mdlib/domdec.c: In function 'dd_redistribute_cg': ../../../src/mdlib/domdec.c:3706:49: warning: unused variable 'cell_d' [-Wunused-variable] int c,i,cg,k,k0,k1,d,dim,dim2,dir,d2,d3,d4,cell_d; ^~~~~~ ../../../src/mdlib/domdec.c:3706:46: warning: unused variable 'd4' [-Wunused-variable] int c,i,cg,k,k0,k1,d,dim,dim2,dir,d2,d3,d4,cell_d; ^~ ../../../src/mdlib/domdec.c: In function 'get_load_distribution': ../../../src/mdlib/domdec.c:4326:16: warning: unused variable 'cid' [-Wunused-variable] int d,dim,cid,i,pos; ^~~ ../../../src/mdlib/domdec.c: In function 'setup_dd_grid': ../../../src/mdlib/domdec.c:4781:10: warning: unused variable 'bZYX' [-Wunused-variable] bool bZYX; ^~~~ ../../../src/mdlib/domdec.c: In function 'make_pp_communicator': ../../../src/mdlib/domdec.c:4944:10: warning: unused variable 'periods' [-Wunused-variable] ivec periods; ^~~~~~~ ../../../src/mdlib/domdec.c:4943:18: warning: unused variable 'buf' [-Wunused-variable] int i,rank,*buf; ^~~ ../../../src/mdlib/domdec.c:4943:12: warning: unused variable 'rank' [-Wunused-variable] int i,rank,*buf; ^~~~ ../../../src/mdlib/domdec.c:4943:10: warning: unused variable 'i' [-Wunused-variable] int i,rank,*buf; ^ ../../../src/mdlib/domdec.c:4942:24: warning: variable 'comm' set but not used [-Wunused-but-set-variable] gmx_domdec_comm_t *comm; ^~~~ ../../../src/mdlib/domdec.c: In function 'receive_ddindex2simnodeid': ../../../src/mdlib/domdec.c:5069:11: warning: unused variable 'buf' [-Wunused-variable] int *buf; ^~~ ../../../src/mdlib/domdec.c:5068:24: warning: variable 'comm' set but not used [-Wunused-but-set-variable] gmx_domdec_comm_t *comm; ^~~~ ../../../src/mdlib/domdec.c: In function 'split_communicator': ../../../src/mdlib/domdec.c:5131:10: warning: unused variable 'periods' [-Wunused-variable] ivec periods; ^~~~~~~ ../../../src/mdlib/domdec.c:5129:12: warning: unused variable 'rank' [-Wunused-variable] int i,rank; ^~~~ ../../../src/mdlib/domdec.c: In function 'check_dlb_support': ../../../src/mdlib/domdec.c:5598:9: warning: label 'edlbYES' defined but not used [-Wunused-label] edlbYES: ^~~~~~~ ../../../src/mdlib/domdec.c:5594:9: warning: label 'edlbAUTO' defined but not used [-Wunused-label] edlbAUTO: ^~~~~~~~ ../../../src/mdlib/domdec.c:5592:9: warning: label 'edlbNO' defined but not used [-Wunused-label] edlbNO: ^~~~~~ ../../../src/mdlib/domdec.c:5553:19: warning: unused variable 'dd' [-Wunused-variable] gmx_domdec_t *dd; ^~ ../../../src/mdlib/domdec.c: In function 'init_domain_decomposition': ../../../src/mdlib/domdec.c:5652:14: warning: unused variable 'j' [-Wunused-variable] int d,i,j; ^ ../../../src/mdlib/domdec.c:5652:12: warning: unused variable 'i' [-Wunused-variable] int d,i,j; ^ ../../../src/mdlib/domdec.c:5652:10: warning: unused variable 'd' [-Wunused-variable] int d,i,j; ^ ../../../src/mdlib/domdec.c: In function 'turn_on_dlb': ../../../src/mdlib/domdec.c:6010:10: warning: unused variable 'buf' [-Wunused-variable] char buf[STRLEN]; ^~~ ../../../src/mdlib/domdec.c: In function 'dd_init_bondeds': ../../../src/mdlib/domdec.c:6086:10: warning: unused variable 'd' [-Wunused-variable] int d; ^ ../../../src/mdlib/domdec.c:6085:10: warning: unused variable 'bBondComm' [-Wunused-variable] bool bBondComm; ^~~~~~~~~ ../../../src/mdlib/domdec.c: In function 'setup_dd_communication': ../../../src/mdlib/domdec.c:6486:64: warning: unused variable 'inv_ncg' [-Wunused-variable] real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh; ^~~~~~~ ../../../src/mdlib/domdec.c:6486:58: warning: unused variable 'r2inc' [-Wunused-variable] real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh; ^~~~~ ../../../src/mdlib/domdec.c:6486:47: warning: unused variable 'r_1' [-Wunused-variable] real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh; ^~~ ../../../src/mdlib/domdec.c:6486:43: warning: unused variable 'r_0' [-Wunused-variable] real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh; ^~~ ../../../src/mdlib/domdec.c:6486:23: warning: unused variable 'r_scomm2' [-Wunused-variable] real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh; ^~~~~~~~ ../../../src/mdlib/domdec.c:6486:10: warning: unused variable 'r_mb' [-Wunused-variable] real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh; ^~~~ ../../../src/mdlib/domdec.c: In function 'dd_partition_system': ../../../src/mdlib/domdec.c:7481:12: warning: unused variable 'j' [-Wunused-variable] int i,j,n,cg0=0,ncg_home_old=-1; ^ At top level: ../../../src/mdlib/domdec.c:1781:13: warning: 'dd_pmenodes' defined but not used [-Wunused-function] static int *dd_pmenodes(t_commrec *cr) ^~~~~~~~~~~ In file included from ../../../include/mdrun.h:50, from ../../../src/mdlib/domdec.c:44: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../include/pme.h:46, from ../../../src/mdlib/domdec.c:41: ../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function] static t_complex cdiv(t_complex teller,t_complex noemer) ^~~~ ../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function] static t_complex csub(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function] static t_complex cadd(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function] static t_complex rcexp(real r) ^~~~~ ../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable] static t_complex cnul = { 0.0, 0.0 }; ^~~~ In file included from ../../../src/mdlib/domdec.c:31: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/mdlib/domdec.c:31: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_fft_fftw3.lo ../../../src/mdlib/gmx_fft_fftw3.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/gmx_fft_fftw3.c -fPIC -DPIC -o .libs/gmx_fft_fftw3.o In file included from ../../../include/gmx_fft.h:41, from ../../../src/mdlib/gmx_fft_fftw3.c:27: ../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function] static t_complex cdiv(t_complex teller,t_complex noemer) ^~~~ ../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function] static t_complex csub(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function] static t_complex cadd(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function] static t_complex rcexp(real r) ^~~~~ ../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable] static t_complex cnul = { 0.0, 0.0 }; ^~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o clincs.lo ../../../src/mdlib/clincs.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/clincs.c -fPIC -DPIC -o .libs/clincs.o ../../../src/mdlib/clincs.c: In function 'do_lincsp': ../../../src/mdlib/clincs.c:189:54: warning: unused variable 'lam' [-Wunused-variable] real tmp0,tmp1,tmp2,im1,im2,mvb,rlen,len,wfac,lam; ^~~ ../../../src/mdlib/clincs.c:189:49: warning: unused variable 'wfac' [-Wunused-variable] real tmp0,tmp1,tmp2,im1,im2,mvb,rlen,len,wfac,lam; ^~~~ ../../../src/mdlib/clincs.c:189:45: warning: unused variable 'len' [-Wunused-variable] real tmp0,tmp1,tmp2,im1,im2,mvb,rlen,len,wfac,lam; ^~~ ../../../src/mdlib/clincs.c:189:40: warning: unused variable 'rlen' [-Wunused-variable] real tmp0,tmp1,tmp2,im1,im2,mvb,rlen,len,wfac,lam; ^~~~ ../../../src/mdlib/clincs.c: In function 'set_lincs': ../../../src/mdlib/clincs.c:764:14: warning: variable 'bLocal' set but not used [-Wunused-but-set-variable] bool bLocal; ^~~~~~ ../../../src/mdlib/clincs.c: In function 'constrain_lincs': ../../../src/mdlib/clincs.c:1084:25: warning: unused variable 'error' [-Wunused-variable] int i,warn,p_imax,error; ^~~~~ At top level: ../../../src/mdlib/clincs.c:1034:13: warning: 'dump_conf' defined but not used [-Wunused-function] static void dump_conf(gmx_domdec_t *dd,struct gmx_lincsdata *li, ^~~~~~~~~ In file included from ../../../include/mdrun.h:50, from ../../../src/mdlib/clincs.c:50: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../src/mdlib/clincs.c:47: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/mdlib/clincs.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/mdlib/clincs.c:45: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o qm_gaussian.lo ../../../src/mdlib/qm_gaussian.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/qm_gaussian.c -fPIC -DPIC -o .libs/qm_gaussian.o ../../../src/mdlib/qm_gaussian.c: In function 'init_gaussian': ../../../src/mdlib/qm_gaussian.c:73:6: warning: unused variable 'rffile' [-Wunused-variable] *rffile=NULL,*out=NULL; ^~~~~~ In file included from ../../../src/mdlib/qm_gaussian.c:60: At top level: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/mdlib/qm_gaussian.c:49: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../src/mdlib/qm_gaussian.c:48: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/mdlib/qm_gaussian.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o vsite.lo ../../../src/mdlib/vsite.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/vsite.c -fPIC -DPIC -o .libs/vsite.o ../../../src/mdlib/vsite.c: In function 'constr_vsiten': ../../../src/mdlib/vsite.c:437:8: warning: unused variable 'xs' [-Wunused-variable] rvec xs,x1,dx; ^~ ../../../src/mdlib/vsite.c: In function 'construct_vsites': ../../../src/mdlib/vsite.c:484:25: warning: unused variable 'rtmp' [-Wunused-variable] rvec reftmp,vtmp,rtmp; ^~~~ ../../../src/mdlib/vsite.c:484:20: warning: unused variable 'vtmp' [-Wunused-variable] rvec reftmp,vtmp,rtmp; ^~~~ ../../../src/mdlib/vsite.c:484:13: warning: unused variable 'reftmp' [-Wunused-variable] rvec reftmp,vtmp,rtmp; ^~~~~~ ../../../src/mdlib/vsite.c:478:19: warning: unused variable 'ii' [-Wunused-variable] int i,inc,ii,nra,nr,tp,ftype; ^~ ../../../src/mdlib/vsite.c: In function 'spread_vsite2': ../../../src/mdlib/vsite.c:655:11: warning: unused variable 'b' [-Wunused-variable] real b; ^ ../../../src/mdlib/vsite.c: In function 'spread_vsite3FD': ../../../src/mdlib/vsite.c:770:23: warning: unused variable 'd' [-Wunused-variable] int svi,sji,skj,d; ^ ../../../src/mdlib/vsite.c:767:14: warning: unused variable 'fz' [-Wunused-variable] real fx,fy,fz,c,invl,fproj,a1; ^~ ../../../src/mdlib/vsite.c:767:11: warning: unused variable 'fy' [-Wunused-variable] real fx,fy,fz,c,invl,fproj,a1; ^~ ../../../src/mdlib/vsite.c:767:8: warning: unused variable 'fx' [-Wunused-variable] real fx,fy,fz,c,invl,fproj,a1; ^~ ../../../src/mdlib/vsite.c: In function 'spread_vsite_f': ../../../src/mdlib/vsite.c:1255:19: warning: unused variable 'm' [-Wunused-variable] int i,inc,m,nra,nr,tp,ftype; ^ ../../../src/mdlib/vsite.c: In function 'count_intercg_vsite': ../../../src/mdlib/vsite.c:1409:11: warning: unused variable 'mt' [-Wunused-variable] int mb,mt,ftype,nral,i,cg,a; ^~ ../../../src/mdlib/vsite.c: In function 'get_vsite_pbc': ../../../src/mdlib/vsite.c:1448:38: warning: unused variable 'cg_c' [-Wunused-variable] int ftype,nral,i,j,vsi,vsite,cg_v,cg_c,a,nc3=0; ^~~~ ../../../src/mdlib/vsite.c: In function 'init_vsite': ../../../src/mdlib/vsite.c:1559:13: warning: unused variable 'cg' [-Wunused-variable] int *a2cg,cg; ^~ In file included from ../../../src/mdlib/vsite.c:46: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/mdlib/vsite.c:46: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -version-info 5:0:0 -lgslcblas -o libmd.la -rpath /usr/lib64 calcmu.lo calcvir.lo constr.lo coupling.lo domdec.lo domdec_con.lo domdec_network.lo domdec_setup.lo domdec_top.lo ebin.lo edsam.lo ewald.lo fftgrid.lo force.lo ghat.lo init.lo mdatom.lo mdebin.lo minimize.lo mvxvf.lo ns.lo nsgrid.lo perf_est.lo pme.lo pme_pp.lo pppm.lo partdec.lo pull.lo pullutil.lo rf_util.lo shakef.lo sim_util.lo shellfc.lo stat.lo tables.lo tgroup.lo update.lo vcm.lo vsite.lo wall.lo wnblist.lo csettle.lo clincs.lo qmmm.lo gmx_fft.lo gmx_parallel_3dfft.lo gmx_wallcycle.lo qm_gaussian.lo gmx_fft_fftw3.lo ../gmxlib/libgmx.la -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath x86_64-alt-linux-gcc -shared .libs/calcmu.o .libs/calcvir.o .libs/constr.o .libs/coupling.o .libs/domdec.o .libs/domdec_con.o .libs/domdec_network.o .libs/domdec_setup.o .libs/domdec_top.o .libs/ebin.o .libs/edsam.o .libs/ewald.o .libs/fftgrid.o .libs/force.o .libs/ghat.o .libs/init.o .libs/mdatom.o .libs/mdebin.o .libs/minimize.o .libs/mvxvf.o .libs/ns.o .libs/nsgrid.o .libs/perf_est.o .libs/pme.o .libs/pme_pp.o .libs/pppm.o .libs/partdec.o .libs/pull.o .libs/pullutil.o .libs/rf_util.o .libs/shakef.o .libs/sim_util.o .libs/shellfc.o .libs/stat.o .libs/tables.o .libs/tgroup.o .libs/update.o .libs/vcm.o .libs/vsite.o .libs/wall.o .libs/wnblist.o .libs/csettle.o .libs/clincs.o .libs/qmmm.o .libs/gmx_fft.o .libs/gmx_parallel_3dfft.o .libs/gmx_wallcycle.o .libs/qm_gaussian.o .libs/gmx_fft_fftw3.o -lgslcblas ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wl,-soname -Wl,libmd.so.5 -o .libs/libmd.so.5.0.0 (cd .libs && rm -f libmd.so.5 && ln -s libmd.so.5.0.0 libmd.so.5) (cd .libs && rm -f libmd.so && ln -s libmd.so.5.0.0 libmd.so) creating libmd.la (cd .libs && rm -f libmd.la && ln -s ../libmd.la libmd.la) make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' Making all in kernel make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o compute_io.lo ../../../src/kernel/compute_io.c mkdir .libs x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/compute_io.c -fPIC -DPIC -o .libs/compute_io.o ../../../src/kernel/compute_io.c: In function 'compute_io': ../../../src/kernel/compute_io.c:49:53: warning: unused variable 'nfep' [-Wunused-variable] int nstx=0,nstv=0,nstf=0,nste=0,nstlog=0,nstxtc=0,nfep=0; ^~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o add_par.lo ../../../src/kernel/add_par.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/add_par.c -fPIC -DPIC -o .libs/add_par.o In file included from ../../../src/kernel/hackblock.h:41, from ../../../src/kernel/add_par.c:46: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/kernel/add_par.c:44: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o convparm.lo ../../../src/kernel/convparm.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/convparm.c -fPIC -DPIC -o .libs/convparm.o ../../../src/kernel/convparm.c: In function 'new_interaction_list': ../../../src/kernel/convparm.c:404:7: warning: unused variable 'i' [-Wunused-variable] int i; ^ ../../../src/kernel/convparm.c: In function 'convert_params': ../../../src/kernel/convparm.c:414:12: warning: unused variable 'j' [-Wunused-variable] int i,j,maxtypes,mt; ^ At top level: ../../../src/kernel/convparm.c:402:13: warning: 'new_interaction_list' defined but not used [-Wunused-function] static void new_interaction_list(t_ilist *ilist) ^~~~~~~~~~~~~~~~~~~~ In file included from ../../../src/kernel/topio.h:41, from ../../../src/kernel/convparm.c:48: ../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable] static const char *couple_lam[ecouplamNR+1] = { ^~~~~~~~~~ ../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable] static const char *constraints[eshNR+1] = { ^~~~~~~~~~~ In file included from ../../../src/kernel/readir.h:43, from ../../../src/kernel/topio.h:41, from ../../../src/kernel/convparm.c:48: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/readir.h:42, from ../../../src/kernel/topio.h:41, from ../../../src/kernel/convparm.c:48: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/kernel/convparm.c:44: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/convparm.c:44: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmxcpp.lo ../../../src/kernel/gmxcpp.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/gmxcpp.c -fPIC -DPIC -o .libs/gmxcpp.o ../../../src/kernel/gmxcpp.c: In function 'cpp_close_file': ../../../src/kernel/gmxcpp.c:453:7: warning: unused variable 'i' [-Wunused-variable] int i; ^ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gpp_bond_atomtype.lo ../../../src/kernel/gpp_bond_atomtype.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/gpp_bond_atomtype.c -fPIC -DPIC -o .libs/gpp_bond_atomtype.o make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gpp_atomtype.lo ../../../src/kernel/gpp_atomtype.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/gpp_atomtype.c -fPIC -DPIC -o .libs/gpp_atomtype.o In file included from ../../../src/kernel/topdirs.h:40, from ../../../src/kernel/gpp_atomtype.c:45: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o genhydro.lo ../../../src/kernel/genhydro.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/genhydro.c -fPIC -DPIC -o .libs/genhydro.o In file included from ../../../src/kernel/hackblock.h:42, from ../../../src/kernel/genhydro.h:41, from ../../../src/kernel/genhydro.c:56: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/genhydro.h:40, from ../../../src/kernel/genhydro.c:56: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/kernel/genhydro.c:51: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/kernel/genhydro.c:50: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/genhydro.c:50: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/genhydro.c:46: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o grompp.o ../../../src/kernel/grompp.c ../../../src/kernel/grompp.c: In function 'new_status': ../../../src/kernel/grompp.c:300:3: warning: statement with no effect [-Wunused-value] mbs; ^~~ ../../../src/kernel/grompp.c: In function 'read_posres': ../../../src/kernel/grompp.c:478:10: warning: unused variable 'bFirst' [-Wunused-variable] bool bFirst = TRUE; ^~~~~~ ../../../src/kernel/grompp.c: In function 'gen_posres': ../../../src/kernel/grompp.c:604:9: warning: unused variable 'j' [-Wunused-variable] int i,j; ^ ../../../src/kernel/grompp.c:604:7: warning: unused variable 'i' [-Wunused-variable] int i,j; ^ ../../../src/kernel/grompp.c: In function 'main': ../../../src/kernel/grompp.c:769:16: warning: unused variable 'natoms' [-Wunused-variable] int natoms,nvsite,comb,mt; ^~~~~~ In file included from ../../../src/kernel/hackblock.h:41, from ../../../src/kernel/pdb2top.h:43, from ../../../src/kernel/add_par.h:41, from ../../../src/kernel/grompp.c:74: At top level: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/kernel/grompp.c:60: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/grompp.c:60: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/grompp.c:54: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/kernel/grompp.c:50: ../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable] static const char *couple_lam[ecouplamNR+1] = { ^~~~~~~~~~ ../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable] static const char *constraints[eshNR+1] = { ^~~~~~~~~~~ In file included from ../../../src/kernel/readir.h:43, from ../../../src/kernel/grompp.c:50: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/readir.h:42, from ../../../src/kernel/grompp.c:50: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ ../../../src/kernel/grompp.c: In function 'main': ../../../src/kernel/grompp.c:380:19: warning: '%s' directive writing up to 4095 bytes into a region of size between 4045 and 4055 [-Wformat-overflow=] sprintf(buf,"%d non-matching atom name%s\n" ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../src/kernel/grompp.c:856:14: new_status(fn,opt2fn_null("-pp",NFILE,fnm),opt2fn("-c",NFILE,fnm), ~~ ../../../src/kernel/grompp.c:381:25: note: format string is defined here "atom names from %s will be used\n" ^~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../src/kernel/grompp.c:46: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 89 or more bytes (assuming 4194) into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o h_db.lo ../../../src/kernel/h_db.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/h_db.c -fPIC -DPIC -o .libs/h_db.o ../../../src/kernel/h_db.c: In function 'dump_h_db': ../../../src/kernel/h_db.c:113:10: warning: unused variable 'j' [-Wunused-variable] int i,j,k; ^ In file included from ../../../src/kernel/hackblock.h:42, from ../../../src/kernel/h_db.h:41, from ../../../src/kernel/h_db.c:47: At top level: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/hackblock.h:41, from ../../../src/kernel/h_db.h:41, from ../../../src/kernel/h_db.c:47: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gen_ad.lo ../../../src/kernel/gen_ad.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/gen_ad.c -fPIC -DPIC -o .libs/gen_ad.o ../../../src/kernel/gen_ad.c: In function 'get_impropers': ../../../src/kernel/gen_ad.c:437:25: warning: unused variable 'r' [-Wunused-variable] int nidih,i,j,k,r,start,ninc,nalloc; ^ ../../../src/kernel/gen_ad.c:436:15: warning: unused variable 'hbidih' [-Wunused-variable] t_rbonded *hbidih; ^~~~~~ ../../../src/kernel/gen_ad.c:434:14: warning: unused variable 'a0' [-Wunused-variable] char *a0; ^~ ../../../src/kernel/gen_ad.c: In function 'clean_excls': ../../../src/kernel/gen_ad.c:576:26: warning: unused variable 'n' [-Wunused-variable] int i,j,j1,k,k1,l,l1,m,n,e; ^ ../../../src/kernel/gen_ad.c:576:24: warning: unused variable 'm' [-Wunused-variable] int i,j,j1,k,k1,l,l1,m,n,e; ^ ../../../src/kernel/gen_ad.c: In function 'generate_excls': ../../../src/kernel/gen_ad.c:618:28: warning: unused variable 'e' [-Wunused-variable] int i,j,j1,k,k1,l,l1,m,n,e,N; ^ ../../../src/kernel/gen_ad.c:618:24: warning: unused variable 'm' [-Wunused-variable] int i,j,j1,k,k1,l,l1,m,n,e,N; ^ ../../../src/kernel/gen_ad.c:618:21: warning: unused variable 'l1' [-Wunused-variable] int i,j,j1,k,k1,l,l1,m,n,e,N; ^~ ../../../src/kernel/gen_ad.c:618:19: warning: unused variable 'l' [-Wunused-variable] int i,j,j1,k,k1,l,l1,m,n,e,N; ^ ../../../src/kernel/gen_ad.c:618:16: warning: unused variable 'k1' [-Wunused-variable] int i,j,j1,k,k1,l,l1,m,n,e,N; ^~ ../../../src/kernel/gen_ad.c:618:14: warning: unused variable 'k' [-Wunused-variable] int i,j,j1,k,k1,l,l1,m,n,e,N; ^ ../../../src/kernel/gen_ad.c:618:11: warning: unused variable 'j1' [-Wunused-variable] int i,j,j1,k,k1,l,l1,m,n,e,N; ^~ At top level: ../../../src/kernel/gen_ad.c:327:13: warning: 'dump_param' defined but not used [-Wunused-function] static void dump_param(FILE *fp,char *title,int n,t_param ps[]) ^~~~~~~~~~ ../../../src/kernel/gen_ad.c:289:13: warning: 'ideq' defined but not used [-Wunused-function] static bool ideq(t_param *p1, t_param *p2) ^~~~ ../../../src/kernel/gen_ad.c:114:13: warning: 'aeq' defined but not used [-Wunused-function] static bool aeq(t_param *p1, t_param *p2) ^~~ In file included from ../../../src/kernel/hackblock.h:41, from ../../../src/kernel/resall.h:41, from ../../../src/kernel/gen_ad.c:57: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/kernel/topio.h:41, from ../../../src/kernel/gen_ad.c:51: ../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable] static const char *couple_lam[ecouplamNR+1] = { ^~~~~~~~~~ ../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable] static const char *constraints[eshNR+1] = { ^~~~~~~~~~~ In file included from ../../../src/kernel/readir.h:42, from ../../../src/kernel/topio.h:41, from ../../../src/kernel/gen_ad.c:51: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/kernel/toputil.h:40, from ../../../src/kernel/gen_ad.c:50: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/gen_ad.c:48: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/gen_ad.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o hackblock.lo ../../../src/kernel/hackblock.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/hackblock.c -fPIC -DPIC -o .libs/hackblock.o In file included from ../../../src/kernel/hackblock.c:44: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/hackblock.c:44: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/hackblock.h:42, from ../../../src/kernel/hackblock.c:42: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/hackblock.h:41, from ../../../src/kernel/hackblock.c:42: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pgutil.lo ../../../src/kernel/pgutil.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/pgutil.c -fPIC -DPIC -o .libs/pgutil.o make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o hizzie.lo ../../../src/kernel/hizzie.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/hizzie.c -fPIC -DPIC -o .libs/hizzie.o ../../../src/kernel/hizzie.c: In function 'set_histp': ../../../src/kernel/hizzie.c:195:8: warning: unused variable 'd' [-Wunused-variable] real d; ^ ../../../src/kernel/hizzie.c:192:27: warning: unused variable 'his0' [-Wunused-variable] int i,j,nd,na,aj,hisnr,his0,type=-1; ^~~~ ../../../src/kernel/hizzie.c:192:18: warning: unused variable 'aj' [-Wunused-variable] int i,j,nd,na,aj,hisnr,his0,type=-1; ^~ ../../../src/kernel/hizzie.c:188:15: warning: unused variable 'bHaveH' [-Wunused-variable] bool *hbond,bHaveH=FALSE; ^~~~~~ In file included from ../../../src/kernel/toputil.h:40, from ../../../src/kernel/hizzie.c:48: At top level: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/hizzie.c:46: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/hizzie.c:46: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/hizzie.c:44: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sorting.lo ../../../src/kernel/sorting.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/sorting.c -fPIC -DPIC -o .libs/sorting.o make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o readpull.lo ../../../src/kernel/readpull.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/readpull.c -fPIC -DPIC -o .libs/readpull.o ../../../src/kernel/readpull.c: In function 'read_pullparams': ../../../src/kernel/readpull.c:102:22: warning: unused variable 'nchar' [-Wunused-variable] int ninp,nerror,i,nchar,ndim,nscan,m; ^~~~~ In file included from ../../../src/kernel/readpull.c:54: At top level: ../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable] static const char *couple_lam[ecouplamNR+1] = { ^~~~~~~~~~ ../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable] static const char *constraints[eshNR+1] = { ^~~~~~~~~~~ In file included from ../../../src/kernel/readir.h:43, from ../../../src/kernel/readpull.c:54: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/readpull.c:46: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/readpull.c:46: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/kernel/readpull.c:45: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o resall.lo ../../../src/kernel/resall.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/resall.c -fPIC -DPIC -o .libs/resall.o In file included from ../../../src/kernel/hackblock.h:42, from ../../../src/kernel/resall.h:41, from ../../../src/kernel/resall.c:49: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/hackblock.h:41, from ../../../src/kernel/resall.h:41, from ../../../src/kernel/resall.c:49: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o specbond.lo ../../../src/kernel/specbond.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/specbond.c -fPIC -DPIC -o .libs/specbond.o In file included from ../../../src/kernel/specbond.c:49: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/specbond.c:49: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/pdb2top.h:41, from ../../../src/kernel/specbond.h:40, from ../../../src/kernel/specbond.c:47: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/specbond.c:43: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ ../../../src/kernel/specbond.c: In function 'mk_specbonds': ../../../src/kernel/specbond.c:236:19: warning: '%d' directive writing between 1 and 11 bytes into a region of size 10 [-Wformat-overflow=] sprintf(buf,"%s%d",*pdba->resname[pdba->atom[sgp[i]].resnr], ^~ ../../../src/kernel/specbond.c:236:16: note: directive argument in the range [-2147483647, 2147483647] sprintf(buf,"%s%d",*pdba->resname[pdba->atom[sgp[i]].resnr], ^~~~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../include/typedefs.h:52, from ../../../src/kernel/specbond.c:42: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 12) into a destination of size 10 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../src/kernel/specbond.c:245:19: warning: '%d' directive writing between 1 and 11 bytes into a region of size 10 [-Wformat-overflow=] sprintf(buf,"%s%d",*pdba->atomname[sgp[i]], sgp[i]+1); ^~ ../../../src/kernel/specbond.c:245:16: note: directive argument in the range [-2147483647, 2147483647] sprintf(buf,"%s%d",*pdba->atomname[sgp[i]], sgp[i]+1); ^~~~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../include/typedefs.h:52, from ../../../src/kernel/specbond.c:42: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 12) into a destination of size 10 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../src/kernel/specbond.c:252:19: warning: '%d' directive writing between 1 and 11 bytes into a region of size 10 [-Wformat-overflow=] sprintf(buf,"%s%d",*pdba->resname[pdba->atom[sgp[i]].resnr], ^~ ../../../src/kernel/specbond.c:252:16: note: directive argument in the range [-2147483647, 2147483647] sprintf(buf,"%s%d",*pdba->resname[pdba->atom[sgp[i]].resnr], ^~~~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../include/typedefs.h:52, from ../../../src/kernel/specbond.c:42: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 12) into a destination of size 10 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../src/kernel/specbond.c:255:19: warning: '%d' directive writing between 1 and 11 bytes into a region of size 10 [-Wformat-overflow=] sprintf(buf,"%s%d", *pdba->atomname[sgp[i]], sgp[i]+1); ^~ ../../../src/kernel/specbond.c:255:16: note: directive argument in the range [-2147483647, 2147483647] sprintf(buf,"%s%d", *pdba->atomname[sgp[i]], sgp[i]+1); ^~~~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../include/typedefs.h:52, from ../../../src/kernel/specbond.c:42: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 12) into a destination of size 10 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pdb2top.lo ../../../src/kernel/pdb2top.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/pdb2top.c -fPIC -DPIC -o .libs/pdb2top.o ../../../src/kernel/pdb2top.c: In function 'missing_atoms': ../../../src/kernel/pdb2top.c:75:16: warning: unused variable 'bRet' [-Wunused-variable] bool bFound, bRet; ^~~~ In file included from ../../../src/kernel/topio.h:41, from ../../../src/kernel/pdb2top.c:57: At top level: ../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable] static const char *couple_lam[ecouplamNR+1] = { ^~~~~~~~~~ ../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable] static const char *constraints[eshNR+1] = { ^~~~~~~~~~~ In file included from ../../../src/kernel/readir.h:42, from ../../../src/kernel/topio.h:41, from ../../../src/kernel/pdb2top.c:57: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/kernel/hackblock.h:41, from ../../../src/kernel/pdb2top.h:43, from ../../../src/kernel/pdb2top.c:50: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/kernel/pdb2top.h:41, from ../../../src/kernel/pdb2top.c:50: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/pdb2top.c:44: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/kernel/pdb2top.c:43: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/pdb2top.c:43: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o tomorse.lo ../../../src/kernel/tomorse.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/tomorse.c -fPIC -DPIC -o .libs/tomorse.o In file included from ../../../src/kernel/tomorse.c:46: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ter_db.lo ../../../src/kernel/ter_db.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/ter_db.c -fPIC -DPIC -o .libs/ter_db.o ../../../src/kernel/ter_db.c: In function 'print_ter_db': ../../../src/kernel/ter_db.c:105:20: warning: unused variable 'nname' [-Wunused-variable] char buf[STRLEN],nname[STRLEN]; ^~~~~ ../../../src/kernel/ter_db.c: In function 'filter_ter': ../../../src/kernel/ter_db.c:301:12: warning: unused variable 's2' [-Wunused-variable] char *s,*s2,*c; ^~ ../../../src/kernel/ter_db.c:299:13: warning: unused variable 'len' [-Wunused-variable] int i,j,n,len,none_idx; ^~~ In file included from ../../../src/kernel/hackblock.h:42, from ../../../src/kernel/resall.h:41, from ../../../src/kernel/ter_db.c:45: At top level: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/hackblock.h:41, from ../../../src/kernel/resall.h:41, from ../../../src/kernel/ter_db.c:45: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o topdirs.lo ../../../src/kernel/topdirs.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/topdirs.c -fPIC -DPIC -o .libs/topdirs.o make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o topexcl.lo ../../../src/kernel/topexcl.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/topexcl.c -fPIC -DPIC -o .libs/topexcl.o In file included from ../../../include/gpp_nextnb.h:40, from ../../../src/kernel/topexcl.c:45: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gen_vsite.lo ../../../src/kernel/gen_vsite.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/gen_vsite.c -fPIC -DPIC -o .libs/gen_vsite.o ../../../src/kernel/gen_vsite.c: In function 'read_vsite_database': ../../../src/kernel/gen_vsite.c:150:34: warning: unused variable 'prevdir' [-Wunused-variable] int i,j,n,k,nvsite,ntop,curdir,prevdir; ^~~~~~~ ../../../src/kernel/gen_vsite.c:150:9: warning: unused variable 'j' [-Wunused-variable] int i,j,n,k,nvsite,ntop,curdir,prevdir; ^ ../../../src/kernel/gen_vsite.c: In function 'add_vsites': ../../../src/kernel/gen_vsite.c:477:33: warning: unused variable 'bb' [-Wunused-variable] int i,j,ftype,other,moreheavy,bb; ^~ ../../../src/kernel/gen_vsite.c: In function 'gen_vsites_6ring': ../../../src/kernel/gen_vsite.c:560:32: warning: variable 'yCE2' set but not used [-Wunused-but-set-variable] real xCG,yCG,xCE1,yCE1,xCE2,yCE2; ^~~~ ../../../src/kernel/gen_vsite.c:560:27: warning: variable 'xCE2' set but not used [-Wunused-but-set-variable] real xCG,yCG,xCE1,yCE1,xCE2,yCE2; ^~~~ ../../../src/kernel/gen_vsite.c:560:22: warning: variable 'yCE1' set but not used [-Wunused-but-set-variable] real xCG,yCG,xCE1,yCE1,xCE2,yCE2; ^~~~ ../../../src/kernel/gen_vsite.c:560:17: warning: variable 'xCE1' set but not used [-Wunused-but-set-variable] real xCG,yCG,xCE1,yCE1,xCE2,yCE2; ^~~~ ../../../src/kernel/gen_vsite.c:560:13: warning: variable 'yCG' set but not used [-Wunused-but-set-variable] real xCG,yCG,xCE1,yCE1,xCE2,yCE2; ^~~ ../../../src/kernel/gen_vsite.c: In function 'calc_vsite3_param': ../../../src/kernel/gen_vsite.c:693:13: warning: variable 'b_ik' set but not used [-Wunused-but-set-variable] real b_ij,b_ik; ^~~~ ../../../src/kernel/gen_vsite.c:693:8: warning: variable 'b_ij' set but not used [-Wunused-but-set-variable] real b_ij,b_ik; ^~~~ ../../../src/kernel/gen_vsite.c: In function 'gen_vsites_trp': ../../../src/kernel/gen_vsite.c:741:12: warning: unused variable 'c' [-Wunused-variable] real a,b,c[MAXFORCEPARAM]; ^ ../../../src/kernel/gen_vsite.c:740:14: warning: unused variable 'mtot' [-Wunused-variable] real mwtot,mtot,mM[NMASS],dCBM1,dCBM2,dM1M2; ^~~~ ../../../src/kernel/gen_vsite.c:740:8: warning: unused variable 'mwtot' [-Wunused-variable] real mwtot,mtot,mM[NMASS],dCBM1,dCBM2,dM1M2; ^~~~~ ../../../src/kernel/gen_vsite.c:738:8: warning: unused variable 'xM' [-Wunused-variable] real xM[NMASS]; ^~ ../../../src/kernel/gen_vsite.c:735:8: warning: variable 'a_CB_CG_CD1' set but not used [-Wunused-but-set-variable] real a_CB_CG_CD1,a_CD2_CG_CD1,a_CE2_CZ2_HZ2,a_CZ2_CH2_HH2; ^~~~~~~~~~~ ../../../src/kernel/gen_vsite.c:729:20: warning: unused variable 'dist' [-Wunused-variable] real lineA,lineB,dist; ^~~~ ../../../src/kernel/gen_vsite.c:729:14: warning: variable 'lineB' set but not used [-Wunused-but-set-variable] real lineA,lineB,dist; ^~~~~ ../../../src/kernel/gen_vsite.c:728:32: warning: unused variable 'I' [-Wunused-variable] real xcom[NMASS],ycom[NMASS],I,alpha; ^ ../../../src/kernel/gen_vsite.c: In function 'gen_vsites_tyr': ../../../src/kernel/gen_vsite.c:968:8: warning: unused variable 'vmass' [-Wunused-variable] real vmass,vdist,mM; ^~~~~ ../../../src/kernel/gen_vsite.c: In function 'do_vsites': ../../../src/kernel/gen_vsite.c:1332:29: warning: unused variable 'bb' [-Wunused-variable] int Hatoms[4],heavies[4],bb; ^~ In file included from ../../../src/kernel/gen_vsite.c:48: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/gen_vsite.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/hackblock.h:41, from ../../../src/kernel/gen_vsite.h:43, from ../../../src/kernel/gen_vsite.c:44: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/kernel/gen_vsite.h:41, from ../../../src/kernel/gen_vsite.c:44: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o topshake.lo ../../../src/kernel/topshake.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/topshake.c -fPIC -DPIC -o .libs/topshake.o ../../../src/kernel/topshake.c: In function 'make_shake': ../../../src/kernel/topshake.c:98:19: warning: unused variable 'b' [-Wunused-variable] int nb,b,i,j,ftype,ftype_a; ^ ../../../src/kernel/topshake.c:98:16: warning: unused variable 'nb' [-Wunused-variable] int nb,b,i,j,ftype,ftype_a; ^~ In file included from ../../../src/kernel/topshake.c:46: At top level: ../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable] static const char *couple_lam[ecouplamNR+1] = { ^~~~~~~~~~ ../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable] static const char *constraints[eshNR+1] = { ^~~~~~~~~~~ In file included from ../../../src/kernel/readir.h:43, from ../../../src/kernel/topshake.c:46: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/readir.h:42, from ../../../src/kernel/topshake.c:46: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o toputil.lo ../../../src/kernel/toputil.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/toputil.c -fPIC -DPIC -o .libs/toputil.o ../../../src/kernel/toputil.c:135:13: warning: 'print_nbt' defined but not used [-Wunused-function] static void print_nbt (FILE *out,char *title,t_atomtype at, ^~~~~~~~~ In file included from ../../../src/kernel/topdirs.h:40, from ../../../src/kernel/toputil.c:45: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xlate.lo ../../../src/kernel/xlate.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/xlate.c -fPIC -DPIC -o .libs/xlate.o make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o glaasje.o ../../../src/kernel/glaasje.c ../../../src/kernel/glaasje.c: In function 'do_glas': ../../../src/kernel/glaasje.c:55:40: warning: unused variable 'r3' [-Wunused-variable] real wd,wdd,zi,fz,dd,d10,d4,d9,d3,r9,r3,sign,cc6,cc12; ^~ ../../../src/kernel/glaasje.c:55:37: warning: unused variable 'r9' [-Wunused-variable] real wd,wdd,zi,fz,dd,d10,d4,d9,d3,r9,r3,sign,cc6,cc12; ^~ In file included from ../../../src/kernel/glaasje.c:44: At top level: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gctio.o ../../../src/kernel/gctio.c In file included from ../../../src/kernel/gctio.c:49: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/kernel/xmdrun.h:50, from ../../../src/kernel/gctio.c:41: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o tpbcmp.lo ../../../src/kernel/tpbcmp.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/tpbcmp.c -fPIC -DPIC -o .libs/tpbcmp.o ../../../src/kernel/tpbcmp.c: In function 'cmp_block': ../../../src/kernel/tpbcmp.c:242:11: warning: unused variable 'k' [-Wunused-variable] int i,j,k; ^ ../../../src/kernel/tpbcmp.c:242:9: warning: unused variable 'j' [-Wunused-variable] int i,j,k; ^ ../../../src/kernel/tpbcmp.c:242:7: warning: unused variable 'i' [-Wunused-variable] int i,j,k; ^ ../../../src/kernel/tpbcmp.c: In function 'cmp_blocka': ../../../src/kernel/tpbcmp.c:252:11: warning: unused variable 'k' [-Wunused-variable] int i,j,k; ^ ../../../src/kernel/tpbcmp.c:252:9: warning: unused variable 'j' [-Wunused-variable] int i,j,k; ^ ../../../src/kernel/tpbcmp.c:252:7: warning: unused variable 'i' [-Wunused-variable] int i,j,k; ^ ../../../src/kernel/tpbcmp.c: In function 'cmp_atom': ../../../src/kernel/tpbcmp.c:265:8: warning: unused variable 'buf' [-Wunused-variable] char buf[256]; ^~~ ../../../src/kernel/tpbcmp.c:264:8: warning: unused variable 'i' [-Wunused-variable] int i; ^ ../../../src/kernel/tpbcmp.c: In function 'cmp_top': ../../../src/kernel/tpbcmp.c:302:7: warning: unused variable 'i' [-Wunused-variable] int i; ^ ../../../src/kernel/tpbcmp.c: In function 'comp_tpx': ../../../src/kernel/tpbcmp.c:567:15: warning: unused variable 'sh' [-Wunused-variable] t_tpxheader sh[2]; ^~ ../../../src/kernel/tpbcmp.c: In function 'comp_enx': ../../../src/kernel/tpbcmp.c:723:38: warning: unused variable 'buf' [-Wunused-variable] char **enm1=NULL,**enm2=NULL,buf[256]; ^~~ ../../../src/kernel/tpbcmp.c:721:36: warning: unused variable 'block' [-Wunused-variable] int in1,in2,nre,nre1,nre2,block; ^~~~~ At top level: ../../../src/kernel/tpbcmp.c:77:13: warning: 'cmp_uc' defined but not used [-Wunused-function] static void cmp_uc(FILE *fp,char *s,int index,unsigned char i1,unsigned char i2) ^~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/kernel/tpbcmp.c:48: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ionize.o ../../../src/kernel/ionize.c ../../../src/kernel/ionize.c: In function 'ionize': ../../../src/kernel/ionize.c:735:2: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (bL) ^~ ../../../src/kernel/ionize.c:737:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (ephot == 2) E_lost += 0.5; /* Real energy should be 2.5 KeV*/ ^~ In file included from ../../../src/kernel/ionize.c:48: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/ionize.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o topio.lo ../../../src/kernel/topio.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/topio.c -fPIC -DPIC -o .libs/topio.o ../../../src/kernel/topio.c: In function 'read_topol': ../../../src/kernel/topio.c:474:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation] else ^~~~ ../../../src/kernel/topio.c:476:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' break; ^~~~~ ../../../src/kernel/topio.c:314:15: warning: unused variable 'block' [-Wunused-variable] t_topology *block=NULL; ^~~~~ In file included from ../../../src/kernel/topio.h:41, from ../../../src/kernel/topio.c:66: At top level: ../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable] static const char *couple_lam[ecouplamNR+1] = { ^~~~~~~~~~ ../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable] static const char *constraints[eshNR+1] = { ^~~~~~~~~~~ In file included from ../../../src/kernel/readir.h:42, from ../../../src/kernel/topio.h:41, from ../../../src/kernel/topio.c:66: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/kernel/vsite_parm.h:41, from ../../../src/kernel/topio.c:59: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o do_gct.o ../../../src/kernel/do_gct.c ../../../src/kernel/do_gct.c: In function 'init_coupling': ../../../src/kernel/do_gct.c:63:19: warning: unused variable 'atj' [-Wunused-variable] int ati,atj; ^~~ ../../../src/kernel/do_gct.c:63:15: warning: unused variable 'ati' [-Wunused-variable] int ati,atj; ^~~ ../../../src/kernel/do_gct.c:62:26: warning: unused variable 'j' [-Wunused-variable] int i,nc,index,j; ^ ../../../src/kernel/do_gct.c:62:20: warning: unused variable 'index' [-Wunused-variable] int i,nc,index,j; ^~~~~ ../../../src/kernel/do_gct.c:62:17: warning: unused variable 'nc' [-Wunused-variable] int i,nc,index,j; ^~ ../../../src/kernel/do_gct.c:62:15: warning: unused variable 'i' [-Wunused-variable] int i,nc,index,j; ^ ../../../src/kernel/do_gct.c: In function 'gprod': ../../../src/kernel/do_gct.c:343:8: warning: unused variable 'i' [-Wunused-variable] int i; ^ ../../../src/kernel/do_gct.c: In function 'do_coupling': ../../../src/kernel/do_gct.c:489:15: warning: unused variable 'bTest' [-Wunused-variable] bool bTest,bPrint; ^~~~~ ../../../src/kernel/do_gct.c:487:59: warning: unused variable 'xi12' [-Wunused-variable] real Epol,Eintern,Virial,muabs,xiH=-1,xiS=-1,xi6,xi12; ^~~~ ../../../src/kernel/do_gct.c:487:55: warning: unused variable 'xi6' [-Wunused-variable] real Epol,Eintern,Virial,muabs,xiH=-1,xiS=-1,xi6,xi12; ^~~ ../../../src/kernel/do_gct.c:486:32: warning: unused variable 'ffc' [-Wunused-variable] real ff6,ff12,ffa,ffb,ffc,ffq,factor,dt,mu_ind; ^~~ ../../../src/kernel/do_gct.c:486:28: warning: unused variable 'ffb' [-Wunused-variable] real ff6,ff12,ffa,ffb,ffc,ffq,factor,dt,mu_ind; ^~~ ../../../src/kernel/do_gct.c:486:24: warning: unused variable 'ffa' [-Wunused-variable] real ff6,ff12,ffa,ffb,ffc,ffq,factor,dt,mu_ind; ^~~ ../../../src/kernel/do_gct.c:485:60: warning: unused variable 'rmsf' [-Wunused-variable] real deviation[eoObsNR],prdev[eoObsNR],epot0,dist,rmsf; ^~~~ At top level: ../../../src/kernel/do_gct.c:457:13: warning: 'dump_fm' defined but not used [-Wunused-function] static void dump_fm(FILE *fp,int n,real f[],char *s) ^~~~~~~ In file included from ../../../src/kernel/do_gct.c:50: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../include/pull.h:44, from ../../../include/mdrun.h:56, from ../../../src/kernel/do_gct.c:48: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../include/pull.h:44, from ../../../include/mdrun.h:56, from ../../../src/kernel/do_gct.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/xmdrun.h:50, from ../../../src/kernel/do_gct.c:41: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o mdrun.o ../../../src/kernel/mdrun.c ../../../src/kernel/mdrun.c: In function 'main': ../../../src/kernel/mdrun.c:387:20: warning: unused variable 'fptest' [-Wunused-variable] FILE *fplog,*fptest; ^~~~~~ ../../../src/kernel/mdrun.c:386:12: warning: unused variable 'HaveCheckpoint' [-Wunused-variable] bool HaveCheckpoint; ^~~~~~~~~~~~~~ ../../../src/kernel/mdrun.c:285:15: warning: unused variable 'bPPPME' [-Wunused-variable] static bool bPPPME = FALSE; ^~~~~~ ../../../src/kernel/mdrun.c:284:15: warning: unused variable 'bCart' [-Wunused-variable] static bool bCart = FALSE; ^~~~~ At top level: ../../../src/kernel/mdrun.c:284:15: warning: 'bCart' defined but not used [-Wunused-variable] ../../../src/kernel/mdrun.c:285:15: warning: 'bPPPME' defined but not used [-Wunused-variable] static bool bPPPME = FALSE; ^~~~~~ In file included from ../../../include/pull.h:44, from ../../../include/mdrun.h:56, from ../../../src/kernel/mdrun.c:49: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../include/pull.h:44, from ../../../include/mdrun.h:56, from ../../../src/kernel/mdrun.c:49: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/mdrun.h:50, from ../../../src/kernel/mdrun.c:49: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/kernel/mdrun.c:44: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/kernel/mdrun.c:42: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o repl_ex.o ../../../src/kernel/repl_ex.c ../../../src/kernel/repl_ex.c: In function 'init_replica_exchange': ../../../src/kernel/repl_ex.c:111:8: warning: unused variable 'temp' [-Wunused-variable] real temp,pres; ^~~~ ../../../src/kernel/repl_ex.c: In function 'replica_exchange': ../../../src/kernel/repl_ex.c:560:20: warning: unused variable 'shift' [-Wunused-variable] int exchange=-1,shift; ^~~~~ At top level: ../../../src/kernel/repl_ex.c:544:13: warning: 'write_debug_x' defined but not used [-Wunused-function] static void write_debug_x(t_state *state) ^~~~~~~~~~~~~ In file included from ../../../src/kernel/repl_ex.c:48: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/repl_ex.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/repl_ex.c:46: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xutils.o ../../../src/kernel/xutils.c ../../../src/kernel/xutils.c: In function 'calc_mu_aver': ../../../src/kernel/xutils.c:65:19: warning: variable 'end' set but not used [-Wunused-but-set-variable] int i,start,end; ^~~ ../../../src/kernel/xutils.c: In function 'update_forcefield': ../../../src/kernel/xutils.c:335:10: warning: unused variable 'bDone' [-Wunused-variable] bool bDone; ^~~~~ In file included from ../../../src/kernel/xutils.c:45: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/xutils.c:45: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/xmdrun.h:50, from ../../../src/kernel/xutils.c:44: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o toppush.lo ../../../src/kernel/toppush.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/toppush.c -fPIC -DPIC -o .libs/toppush.o ../../../src/kernel/toppush.c: In function 'push_bt': ../../../src/kernel/toppush.c:573:37: warning: variable 'nrfpB' set but not used [-Wunused-but-set-variable] int i,ft,ftype,nn,nrfp,nrfpA,nrfpB; ^~~~~ ../../../src/kernel/toppush.c: In function 'push_dihedraltype': ../../../src/kernel/toppush.c:661:37: warning: variable 'nrfpB' set but not used [-Wunused-but-set-variable] int i,ft,ftype,nn,nrfp,nrfpA,nrfpB,nral; ^~~~~ ../../../src/kernel/toppush.c: In function 'push_nbt': ../../../src/kernel/toppush.c:778:17: warning: unused variable 'sig6' [-Wunused-variable] real cr[4],sig6; ^~~~ ../../../src/kernel/toppush.c:776:23: warning: unused variable 'atnr' [-Wunused-variable] int i,f,n,ftype,atnr,nrfp; ^~~~ ../../../src/kernel/toppush.c: In function 'push_atom_now': ../../../src/kernel/toppush.c:871:7: warning: unused variable 'j' [-Wunused-variable] int j,resnr_diff=-1; ^ ../../../src/kernel/toppush.c: In function 'push_bond': ../../../src/kernel/toppush.c:1234:18: warning: unused variable 'paramB' [-Wunused-variable] t_param param,paramB,*param_defA,*param_defB; ^~~~~~ In file included from ../../../src/kernel/toppush.c:51: At top level: ../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable] static const char *couple_lam[ecouplamNR+1] = { ^~~~~~~~~~ ../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable] static const char *constraints[eshNR+1] = { ^~~~~~~~~~~ In file included from ../../../src/kernel/readir.h:42, from ../../../src/kernel/toppush.c:51: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/kernel/toputil.h:40, from ../../../src/kernel/toppush.c:48: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ ../../../src/kernel/toppush.c: In function 'push_at': ../../../src/kernel/toppush.c:446:41: warning: '%s' directive writing up to 4095 bytes into a region of size 236 [-Wformat-overflow=] sprintf(errbuf,"Overriding atomtype %s",type); ^~ ~~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../src/kernel/toppush.c:43: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 21 and 4116 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o readir.lo ../../../src/kernel/readir.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/readir.c -fPIC -DPIC -o .libs/readir.o ../../../src/kernel/readir.c: In function 'do_index': ../../../src/kernel/readir.c:1427:38: warning: variable 'nbTS' set but not used [-Wunused-but-set-variable] nSAon,nSAoff,nSAsteps,nQMg,nbOPT,nbTS; ^~~~ ../../../src/kernel/readir.c:1427:32: warning: variable 'nbOPT' set but not used [-Wunused-but-set-variable] nSAon,nSAoff,nSAsteps,nQMg,nbOPT,nbTS; ^~~~~ ../../../src/kernel/readir.c:1427:18: warning: variable 'nSAsteps' set but not used [-Wunused-but-set-variable] nSAon,nSAoff,nSAsteps,nQMg,nbOPT,nbTS; ^~~~~~~~ ../../../src/kernel/readir.c:1427:11: warning: variable 'nSAoff' set but not used [-Wunused-but-set-variable] nSAon,nSAoff,nSAsteps,nQMg,nbOPT,nbTS; ^~~~~~ ../../../src/kernel/readir.c:1427:5: warning: variable 'nSAon' set but not used [-Wunused-but-set-variable] nSAon,nSAoff,nSAsteps,nQMg,nbOPT,nbTS; ^~~~~ ../../../src/kernel/readir.c:1426:61: warning: variable 'nCASelec' set but not used [-Wunused-but-set-variable] int nQMmethod,nQMbasis,nQMcharge,nQMmult,nbSH,nCASorb,nCASelec, ^~~~~~~~ ../../../src/kernel/readir.c:1426:53: warning: variable 'nCASorb' set but not used [-Wunused-but-set-variable] int nQMmethod,nQMbasis,nQMcharge,nQMmult,nbSH,nCASorb,nCASelec, ^~~~~~~ ../../../src/kernel/readir.c:1426:48: warning: variable 'nbSH' set but not used [-Wunused-but-set-variable] int nQMmethod,nQMbasis,nQMcharge,nQMmult,nbSH,nCASorb,nCASelec, ^~~~ ../../../src/kernel/readir.c:1426:40: warning: variable 'nQMmult' set but not used [-Wunused-but-set-variable] int nQMmethod,nQMbasis,nQMcharge,nQMmult,nbSH,nCASorb,nCASelec, ^~~~~~~ ../../../src/kernel/readir.c:1426:30: warning: variable 'nQMcharge' set but not used [-Wunused-but-set-variable] int nQMmethod,nQMbasis,nQMcharge,nQMmult,nbSH,nCASorb,nCASelec, ^~~~~~~~~ ../../../src/kernel/readir.c:1424:11: warning: unused variable 'SAtime' [-Wunused-variable] real SAtime; ^~~~~~ ../../../src/kernel/readir.c: In function 'triple_check': ../../../src/kernel/readir.c:1872:17: warning: unused variable 'npct' [-Wunused-variable] int i,m,nmol,npct; ^~~~ In file included from ../../../src/kernel/readir.c:58: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/readir.c:58: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/readir.h:43, from ../../../src/kernel/readir.c:54: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/readir.c:53: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o luck.o ../../../src/kernel/luck.c In file included from ../../../include/statutil.h:51, from ../../../src/kernel/luck.c:43: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/kernel/luck.c:41: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o protonate.o ../../../src/kernel/protonate.c In file included from ../../../src/kernel/protonate.c:50: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/protonate.c:50: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/hackblock.h:42, from ../../../src/kernel/genhydro.h:41, from ../../../src/kernel/protonate.c:47: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/genhydro.h:40, from ../../../src/kernel/protonate.c:47: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/kernel/protonate.c:45: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/kernel/protonate.c:43: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o genalg.o ../../../src/kernel/genalg.c ../../../src/kernel/genalg.c: In function 'update_ga': ../../../src/kernel/genalg.c:197:12: warning: unused variable 'j' [-Wunused-variable] int i, j, L, n; /* counting variables */ ^ In file included from ../../../src/kernel/genalg.c:75: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/genalg.c:75: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o vsite_parm.lo ../../../src/kernel/vsite_parm.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/vsite_parm.c -fPIC -DPIC -o .libs/vsite_parm.o ../../../src/kernel/vsite_parm.c: In function 'clean_vsite_bonds': ../../../src/kernel/vsite_parm.c:862:62: warning: unused variable 'vsitetype' [-Wunused-variable] int ftype,i,j,parnr,k,l,m,n,nvsite,nOut,kept_i,vsnral,vsitetype; ^~~~~~~~~ ../../../src/kernel/vsite_parm.c:862:30: warning: unused variable 'l' [-Wunused-variable] int ftype,i,j,parnr,k,l,m,n,nvsite,nOut,kept_i,vsnral,vsitetype; ^ ../../../src/kernel/vsite_parm.c:862:22: warning: unused variable 'parnr' [-Wunused-variable] int ftype,i,j,parnr,k,l,m,n,nvsite,nOut,kept_i,vsnral,vsitetype; ^~~~~ ../../../src/kernel/vsite_parm.c: In function 'clean_vsite_angles': ../../../src/kernel/vsite_parm.c:1035:51: warning: unused variable 'vsitetype' [-Wunused-variable] int i,j,parnr,k,l,m,n,nvsite,kept_i,vsnral,vsitetype; ^~~~~~~~~ ../../../src/kernel/vsite_parm.c:1035:24: warning: unused variable 'l' [-Wunused-variable] int i,j,parnr,k,l,m,n,nvsite,kept_i,vsnral,vsitetype; ^ ../../../src/kernel/vsite_parm.c:1035:16: warning: unused variable 'parnr' [-Wunused-variable] int i,j,parnr,k,l,m,n,nvsite,kept_i,vsnral,vsitetype; ^~~~~ ../../../src/kernel/vsite_parm.c: In function 'clean_vsite_dihs': ../../../src/kernel/vsite_parm.c:1130:28: warning: unused variable 'l' [-Wunused-variable] int ftype,i,parnr,k,l,m,n,nvsite,kept_i,vsnral; ^ ../../../src/kernel/vsite_parm.c:1130:20: warning: unused variable 'parnr' [-Wunused-variable] int ftype,i,parnr,k,l,m,n,nvsite,kept_i,vsnral; ^~~~~ ../../../src/kernel/vsite_parm.c:1130:12: warning: unused variable 'ftype' [-Wunused-variable] int ftype,i,parnr,k,l,m,n,nvsite,kept_i,vsnral; ^~~~~ In file included from ../../../src/kernel/vsite_parm.c:47: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/vsite_parm.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/hackblock.h:41, from ../../../src/kernel/resall.h:41, from ../../../src/kernel/vsite_parm.c:45: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/kernel/vsite_parm.h:41, from ../../../src/kernel/vsite_parm.c:43: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o tpbconv.o ../../../src/kernel/tpbconv.c ../../../src/kernel/tpbconv.c: In function 'main': ../../../src/kernel/tpbconv.c:365:7: warning: unused variable 'nerror' [-Wunused-variable] int nerror = 0; ^~~~~~ ../../../src/kernel/tpbconv.c:325:17: warning: unused variable 'gopts' [-Wunused-variable] t_gromppopts *gopts; ^~~~~ ../../../src/kernel/tpbconv.c:324:21: warning: unused variable 'irnew' [-Wunused-variable] t_inputrec *ir,*irnew=NULL; ^~~~~ ../../../src/kernel/tpbconv.c:318:33: warning: unused variable 'nsteps_org' [-Wunused-variable] int i,frame,run_step,nsteps_org; ^~~~~~~~~~ In file included from ../../../src/kernel/tpbconv.c:56: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/tpbconv.c:56: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/tpbconv.c:54: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/kernel/tpbconv.c:52: ../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable] static const char *couple_lam[ecouplamNR+1] = { ^~~~~~~~~~ ../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable] static const char *constraints[eshNR+1] = { ^~~~~~~~~~~ In file included from ../../../src/kernel/readir.h:43, from ../../../src/kernel/tpbconv.c:52: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/readir.h:42, from ../../../src/kernel/tpbconv.c:52: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmxdump.o ../../../src/kernel/gmxdump.c ../../../src/kernel/gmxdump.c: In function 'list_tpx': ../../../src/kernel/gmxdump.c:146:16: warning: left-hand operand of comma expression has no effect [-Wunused-value] if (state,tpx.bF) { ^ ../../../src/kernel/gmxdump.c:99:20: warning: unused variable 'fp' [-Wunused-variable] int step,fp,indent,i,j,**gcount,atot; ^~ ../../../src/kernel/gmxdump.c: In function 'list_ene': ../../../src/kernel/gmxdump.c:314:17: warning: unused variable 'ndr' [-Wunused-variable] int in,ndr; ^~~ At top level: ../../../src/kernel/gmxdump.c:65:13: warning: 'dump_top' defined but not used [-Wunused-function] static void dump_top(FILE *fp,t_topology *top,char *tpr) ^~~~~~~~ In file included from ../../../src/kernel/gmxdump.c:47: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/kernel/gmxdump.c:46: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nm2type.o ../../../src/kernel/nm2type.c ../../../src/kernel/nm2type.c: In function 'rd_nm2type': ../../../src/kernel/nm2type.c:72:20: warning: unused variable 'blen' [-Wunused-variable] double qq,mm,*blen; ^~~~ ../../../src/kernel/nm2type.c: In function 'nm2type': ../../../src/kernel/nm2type.c:160:38: warning: unused variable 'quality' [-Wunused-variable] int *bbb,*n_mask,*m_mask,**match,**quality; ^~~~~~~ In file included from ../../../src/kernel/hackblock.h:41, from ../../../src/kernel/pdb2top.h:43, from ../../../src/kernel/nm2type.c:59: At top level: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/kernel/toputil.h:40, from ../../../src/kernel/toppush.h:41, from ../../../src/kernel/nm2type.c:58: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/nm2type.c:52: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/kernel/nm2type.c:51: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/kernel/nm2type.c:44: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/kernel/nm2type.c:42: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o x2top.o ../../../src/kernel/x2top.c ../../../src/kernel/x2top.c: In function 'set_cgnr': ../../../src/kernel/x2top.c:178:15: warning: unused variable 'mt' [-Wunused-variable] double qt=0,mt=0; ^~ ../../../src/kernel/x2top.c: In function 'set_force_const': ../../../src/kernel/x2top.c:255:7: warning: unused variable 'i' [-Wunused-variable] int i; ^ ../../../src/kernel/x2top.c: In function 'main': ../../../src/kernel/x2top.c:419:15: warning: unused variable 'scale' [-Wunused-variable] static real scale = 1.1, kb = 4e5,kt = 400,kp = 5; ^~~~~ ../../../src/kernel/x2top.c:411:14: warning: unused variable 'cutoff' [-Wunused-variable] real cutoff,qtot,mtot; ^~~~~~ ../../../src/kernel/x2top.c:408:24: warning: unused variable 'ndih' [-Wunused-variable] int i,j,k,l,m,ndih; ^~~~ ../../../src/kernel/x2top.c:408:22: warning: unused variable 'm' [-Wunused-variable] int i,j,k,l,m,ndih; ^ ../../../src/kernel/x2top.c:408:20: warning: unused variable 'l' [-Wunused-variable] int i,j,k,l,m,ndih; ^ ../../../src/kernel/x2top.c:408:18: warning: unused variable 'k' [-Wunused-variable] int i,j,k,l,m,ndih; ^ ../../../src/kernel/x2top.c:408:16: warning: unused variable 'j' [-Wunused-variable] int i,j,k,l,m,ndih; ^ ../../../src/kernel/x2top.c:408:14: warning: unused variable 'i' [-Wunused-variable] int i,j,k,l,m,ndih; ^ ../../../src/kernel/x2top.c:407:14: warning: unused variable 'nres' [-Wunused-variable] int nres; /* number of molecules? */ ^~~~ At top level: ../../../src/kernel/x2top.c:419:15: warning: 'scale' defined but not used [-Wunused-variable] static real scale = 1.1, kb = 4e5,kt = 400,kp = 5; ^~~~~ ../../../src/kernel/x2top.c:117:12: warning: 'get_atype' defined but not used [-Wunused-function] static int get_atype(char *nm) ^~~~~~~~~ ../../../src/kernel/x2top.c:80:13: warning: 'set_x_blen' defined but not used [-Wunused-function] static real set_x_blen(real scale) ^~~~~~~~~~ In file included from ../../../src/kernel/topio.h:41, from ../../../src/kernel/gen_ad.h:42, from ../../../src/kernel/x2top.c:60: ../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable] static const char *couple_lam[ecouplamNR+1] = { ^~~~~~~~~~ ../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable] static const char *constraints[eshNR+1] = { ^~~~~~~~~~~ In file included from ../../../src/kernel/hackblock.h:41, from ../../../src/kernel/pdb2top.h:43, from ../../../src/kernel/x2top.c:59: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/kernel/toputil.h:40, from ../../../src/kernel/toppush.h:41, from ../../../src/kernel/x2top.c:58: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/x2top.c:52: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/kernel/x2top.c:51: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/kernel/x2top.c:42: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/kernel/x2top.c:40: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmxcheck.o ../../../src/kernel/gmxcheck.c ../../../src/kernel/gmxcheck.c: In function 'tpx2system': ../../../src/kernel/gmxcheck.c:90:7: warning: unused variable 'i' [-Wunused-variable] int i,nmol,nvsite=0; ^ ../../../src/kernel/gmxcheck.c: In function 'tpx2methods': ../../../src/kernel/gmxcheck.c:140:15: warning: unused variable 'i' [-Wunused-variable] int i,step; ^ ../../../src/kernel/gmxcheck.c:136:15: warning: unused variable 'sh' [-Wunused-variable] t_tpxheader sh; ^~ ../../../src/kernel/gmxcheck.c: In function 'chk_bonds': ../../../src/kernel/gmxcheck.c:202:26: warning: variable 'devtot' set but not used [-Wunused-but-set-variable] real b0,blen,deviation,devtot; ^~~~~~ ../../../src/kernel/gmxcheck.c:201:14: warning: unused variable 'i' [-Wunused-variable] int ftype,i,k,ai,aj,type; ^ ../../../src/kernel/gmxcheck.c: In function 'chk_trj': ../../../src/kernel/gmxcheck.c:252:35: warning: unused variable 'bOK' [-Wunused-variable] bool bShowTimestep=TRUE,bOK,newline=FALSE; ^~~ ../../../src/kernel/gmxcheck.c:251:40: warning: unused variable 'prec' [-Wunused-variable] real rdum,t,tt,old_t1,old_t2,prec; ^~~~ ../../../src/kernel/gmxcheck.c:251:23: warning: unused variable 'tt' [-Wunused-variable] real rdum,t,tt,old_t1,old_t2,prec; ^~ ../../../src/kernel/gmxcheck.c:251:16: warning: unused variable 'rdum' [-Wunused-variable] real rdum,t,tt,old_t1,old_t2,prec; ^~~~ ../../../src/kernel/gmxcheck.c:250:16: warning: variable 'fpos' set but not used [-Wunused-but-set-variable] off_t fpos; ^~~~ ../../../src/kernel/gmxcheck.c: In function 'chk_ndx': ../../../src/kernel/gmxcheck.c:526:10: warning: unused variable 'j' [-Wunused-variable] int i,j; ^ ../../../src/kernel/gmxcheck.c: In function 'chk_enx': ../../../src/kernel/gmxcheck.c:550:25: warning: unused variable 'ndr' [-Wunused-variable] int in,nre,fnr,ndr; ^~~ In file included from ../../../src/kernel/gmxcheck.c:57: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/gmxcheck.c:57: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/gmxcheck.c:48: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/kernel/gmxcheck.c:47: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o libgmxpreprocess.la add_par.lo compute_io.lo convparm.lo gen_ad.lo gen_vsite.lo genhydro.lo gmxcpp.lo gpp_atomtype.lo gpp_bond_atomtype.lo h_db.lo hackblock.lo hizzie.lo pdb2top.lo pgutil.lo readir.lo readpull.lo resall.lo sorting.lo specbond.lo ter_db.lo tomorse.lo topdirs.lo topexcl.lo topio.lo toppush.lo topshake.lo toputil.lo tpbcmp.lo vsite_parm.lo xlate.lo -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath ar cru .libs/libgmxpreprocess.a .libs/add_par.o .libs/compute_io.o .libs/convparm.o .libs/gen_ad.o .libs/gen_vsite.o .libs/genhydro.o .libs/gmxcpp.o .libs/gpp_atomtype.o .libs/gpp_bond_atomtype.o .libs/h_db.o .libs/hackblock.o .libs/hizzie.o .libs/pdb2top.o .libs/pgutil.o .libs/readir.o .libs/readpull.o .libs/resall.o .libs/sorting.o .libs/specbond.o .libs/ter_db.o .libs/tomorse.o .libs/topdirs.o .libs/topexcl.o .libs/topio.o .libs/toppush.o .libs/topshake.o .libs/toputil.o .libs/tpbcmp.o .libs/vsite_parm.o .libs/xlate.o ranlib .libs/libgmxpreprocess.a creating libgmxpreprocess.la (cd .libs && rm -f libgmxpreprocess.la && ln -s ../libgmxpreprocess.la libgmxpreprocess.la) make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pdb2gmx.o ../../../src/kernel/pdb2gmx.c ../../../src/kernel/pdb2gmx.c:149:20: warning: 'get_cystp' defined but not used [-Wunused-function] static const char *get_cystp(int resnr) ^~~~~~~~~ In file included from ../../../src/kernel/toputil.h:40, from ../../../src/kernel/pdb2gmx.c:55: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/pdb2gmx.c:54: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/kernel/pdb2gmx.c:51: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/kernel/pdb2gmx.c:50: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/pdb2gmx.c:50: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/pdb2gmx.c:46: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ ../../../src/kernel/pdb2gmx.c: In function 'main': ../../../src/kernel/pdb2gmx.c:783:18: warning: '.rtp' directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(rtp,"%s.rtp",forcefield); ^~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../src/kernel/pdb2gmx.c:42: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 5 and 4100 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../src/kernel/pdb2gmx.c:1162:31: warning: '%s' directive writing up to 4095 bytes into a region of size 4089 [-Wformat-overflow=] sprintf(molname,"Protein%s",suffix); ^~ ~~~~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../src/kernel/pdb2gmx.c:42: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 8 and 4103 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../src/kernel/pdb2gmx.c:1176:22: warning: '_pr.itp' directive writing 7 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(posre_fn,"%s_pr.itp",buf_fn); ^~~~~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../src/kernel/pdb2gmx.c:42: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 8 and 4103 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o md.o ../../../src/kernel/md.c ../../../src/kernel/md.c: In function 'mdrunner': ../../../src/kernel/md.c:140:15: warning: unused variable 'gro' [-Wunused-variable] char *gro; ^~~ ../../../src/kernel/md.c:139:45: warning: unused variable 'nalloc' [-Wunused-variable] int i,m,nChargePerturbed=-1,status,nalloc; ^~~~~~ ../../../src/kernel/md.c:139:16: warning: unused variable 'm' [-Wunused-variable] int i,m,nChargePerturbed=-1,status,nalloc; ^ ../../../src/kernel/md.c:139:14: warning: unused variable 'i' [-Wunused-variable] int i,m,nChargePerturbed=-1,status,nalloc; ^ ../../../src/kernel/md.c:128:20: warning: unused variable 'tmpr2' [-Wunused-variable] real tmpr1,tmpr2; ^~~~~ ../../../src/kernel/md.c:128:14: warning: unused variable 'tmpr1' [-Wunused-variable] real tmpr1,tmpr2; ^~~~~ ../../../src/kernel/md.c: In function 'do_md': ../../../src/kernel/md.c:533:16: warning: unused variable 'grpname' [-Wunused-variable] char *grpname; ^~~~~~~ ../../../src/kernel/md.c:525:15: warning: unused variable 'timestep' [-Wunused-variable] real timestep=0; ^~~~~~~~ In file included from ../../../include/pppm.h:46, from ../../../src/kernel/md.c:69: At top level: ../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function] static t_complex cdiv(t_complex teller,t_complex noemer) ^~~~ ../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function] static t_complex csub(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function] static t_complex cadd(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function] static t_complex rcexp(real r) ^~~~~ ../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable] static t_complex cnul = { 0.0, 0.0 }; ^~~~ In file included from ../../../include/statutil.h:51, from ../../../src/kernel/md.c:46: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/kernel/md.c:45: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/md.c:45: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o tpbconv tpbconv.o libgmxpreprocess.la ../mdlib/libmd.la ../gmxlib/libgmx.la -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/tpbconv tpbconv.o ./.libs/libgmxpreprocess.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath creating tpbconv make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o luck luck.o libgmxpreprocess.la ../mdlib/libmd.la ../gmxlib/libgmx.la -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/luck luck.o ./.libs/libgmxpreprocess.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath creating luck make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o protonate protonate.o libgmxpreprocess.la ../mdlib/libmd.la ../gmxlib/libgmx.la -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/protonate protonate.o ./.libs/libgmxpreprocess.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath creating protonate make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o gmxcheck gmxcheck.o libgmxpreprocess.la ../mdlib/libmd.la ../gmxlib/libgmx.la -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/gmxcheck gmxcheck.o ./.libs/libgmxpreprocess.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath creating gmxcheck make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o gmxdump gmxdump.o libgmxpreprocess.la ../mdlib/libmd.la ../gmxlib/libgmx.la -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/gmxdump gmxdump.o ./.libs/libgmxpreprocess.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath creating gmxdump make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o grompp grompp.o libgmxpreprocess.la ../mdlib/libmd.la ../gmxlib/libgmx.la -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/grompp grompp.o ./.libs/libgmxpreprocess.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath creating grompp make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o x2top x2top.o nm2type.o libgmxpreprocess.la ../mdlib/libmd.la ../gmxlib/libgmx.la -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/x2top x2top.o nm2type.o ./.libs/libgmxpreprocess.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath creating x2top make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o mdrun glaasje.o gctio.o ionize.o do_gct.o repl_ex.o xutils.o md.o mdrun.o genalg.o libgmxpreprocess.la ../mdlib/libmd.la ../gmxlib/libgmx.la -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/mdrun glaasje.o gctio.o ionize.o do_gct.o repl_ex.o xutils.o md.o mdrun.o genalg.o ./.libs/libgmxpreprocess.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath creating mdrun make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o pdb2gmx pdb2gmx.o libgmxpreprocess.la ../mdlib/libmd.la ../gmxlib/libgmx.la -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/pdb2gmx pdb2gmx.o ./.libs/libgmxpreprocess.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath creating pdb2gmx make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' Making all in tools make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o polynomials.lo ../../../src/tools/polynomials.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/polynomials.c -fPIC -DPIC -o .libs/polynomials.o In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/tools/polynomials.c:44: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pp2shift.lo ../../../src/tools/pp2shift.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/pp2shift.c -fPIC -DPIC -o .libs/pp2shift.o In file included from ../../../src/tools/pp2shift.c:50: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/pp2shift.c:47: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o do_dssp.o ../../../src/tools/do_dssp.c ../../../src/tools/do_dssp.c: In function 'main': ../../../src/tools/do_dssp.c:347:16: warning: unused variable 'j' [-Wunused-variable] int i,j,natoms,nframe=0; ^ In file included from ../../../src/tools/do_dssp.c:49: At top level: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/tools/do_dssp.c:48: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/do_dssp.c:47: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlist.lo ../../../src/tools/dlist.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/dlist.c -fPIC -DPIC -o .libs/dlist.o In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/tools/dlist.c:44: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o eigio.lo ../../../src/tools/eigio.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/eigio.c -fPIC -DPIC -o .libs/eigio.o In file included from ../../../src/tools/eigio.c:41: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/eigio.c:41: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o expfit.lo ../../../src/tools/expfit.c mkdir .libs mkdir: cannot create directory '.libs': File exists x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/expfit.c -fPIC -DPIC -o .libs/expfit.o In file included from ../../../src/tools/expfit.c:49: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/expfit.c:49: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/tools/expfit.c:48: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o lsq.lo ../../../src/tools/lsq.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/lsq.c -fPIC -DPIC -o .libs/lsq.o In file included from ../../../src/tools/lsq.c:42: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/lsq.c:42: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/tools/lsq.c:41: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o levenmar.lo ../../../src/tools/levenmar.c mkdir .libs mkdir: cannot create directory '.libs': File exists x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/levenmar.c -fPIC -DPIC -o .libs/levenmar.o ../../../src/tools/levenmar.c:224:13: warning: 'free_convert_matrix' defined but not used [-Wunused-function] static void free_convert_matrix(real **b, int nrl) ^~~~~~~~~~~~~~~~~~~ ../../../src/tools/levenmar.c:208:15: warning: 'convert_matrix' defined but not used [-Wunused-function] static real **convert_matrix(real *a, int nrl, int nrh, int ncl, int nch) ^~~~~~~~~~~~~~ ../../../src/tools/levenmar.c:201:13: warning: 'free_submatrix' defined but not used [-Wunused-function] static void free_submatrix(real **b, int nrl) ^~~~~~~~~~~~~~ ../../../src/tools/levenmar.c:191:13: warning: 'free_imatrix' defined but not used [-Wunused-function] static void free_imatrix(int **m, int nrl, int nrh, int ncl) ^~~~~~~~~~~~ ../../../src/tools/levenmar.c:183:13: warning: 'free_dmatrix' defined but not used [-Wunused-function] static void free_dmatrix(double **m, int nrl, int nrh, int ncl) ^~~~~~~~~~~~ ../../../src/tools/levenmar.c:168:13: warning: 'free_dvector' defined but not used [-Wunused-function] static void free_dvector(int *v, int nl) ^~~~~~~~~~~~ ../../../src/tools/levenmar.c:141:15: warning: 'submatrix' defined but not used [-Wunused-function] static real **submatrix(real **a, int oldrl, int oldrh, int oldcl, ^~~~~~~~~ ../../../src/tools/levenmar.c:123:14: warning: 'imatrix1' defined but not used [-Wunused-function] static int **imatrix1(int nrl, int nrh, int ncl, int nch) ^~~~~~~~ ../../../src/tools/levenmar.c:106:17: warning: 'dmatrix' defined but not used [-Wunused-function] static double **dmatrix(int nrl, int nrh, int ncl, int nch) ^~~~~~~ ../../../src/tools/levenmar.c:78:16: warning: 'dvector' defined but not used [-Wunused-function] static double *dvector(int nl, int nh) ^~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o cmat.lo ../../../src/tools/cmat.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/cmat.c -fPIC -DPIC -o .libs/cmat.o make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o eigensolver.lo ../../../src/tools/eigensolver.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/eigensolver.c -fPIC -DPIC -o .libs/eigensolver.o ../../../src/tools/eigensolver.c: In function 'eigensolver': ../../../src/tools/eigensolver.c:65:16: warning: unused variable 'iu' [-Wunused-variable] int il,iu,m,iw0,info; ^~ ../../../src/tools/eigensolver.c:65:13: warning: unused variable 'il' [-Wunused-variable] int il,iu,m,iw0,info; ^~ ../../../src/tools/eigensolver.c: In function 'sparse_eigensolver': ../../../src/tools/eigensolver.c:296:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(i=0;i<11;i++) ^~~ ../../../src/tools/eigensolver.c:299:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' iparam[0] = 1; /* Don't use explicit shifts */ ^~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o anadih.lo ../../../src/tools/anadih.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/anadih.c -fPIC -DPIC -o .libs/anadih.o In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/tools/anadih.c:51: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/anadih.c:50: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/anadih.c:50: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o autocorr.lo ../../../src/tools/autocorr.c mkdir .libs x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/autocorr.c -fPIC -DPIC -o .libs/autocorr.o In file included from ../../../include/gmx_fft.h:41, from ../../../src/tools/correl.h:40, from ../../../src/tools/autocorr.c:53: ../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function] static t_complex cdiv(t_complex teller,t_complex noemer) ^~~~ ../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function] static t_complex csub(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function] static t_complex cadd(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function] static t_complex rcexp(real r) ^~~~~ ../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable] static t_complex cnul = { 0.0, 0.0 }; ^~~~ In file included from ../../../src/tools/autocorr.c:51: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/autocorr.c:51: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/tools/autocorr.c:48: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o fitahx.lo ../../../src/tools/fitahx.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/fitahx.c -fPIC -DPIC -o .libs/fitahx.o In file included from ../../../src/tools/fitahx.c:41: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/fitahx.c:41: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_bond.lo ../../../src/tools/gmx_bond.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_bond.c -fPIC -DPIC -o .libs/gmx_bond.o In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_bond.c:51: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_bond.c:48: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_bond.c:45: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_bond.c:45: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o hxprops.lo ../../../src/tools/hxprops.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/hxprops.c -fPIC -DPIC -o .libs/hxprops.o ../../../src/tools/hxprops.c: In function 'ellipticity': ../../../src/tools/hxprops.c:85:14: warning: unused variable 'Xi' [-Wunused-variable] const real Xi=1.0; ^~ In file included from ../../../src/tools/hxprops.c:46: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/hxprops.c:46: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_angle.lo ../../../src/tools/gmx_angle.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_angle.c -fPIC -DPIC -o .libs/gmx_angle.o ../../../src/tools/gmx_angle.c: In function 'gmx_angle': ../../../src/tools/gmx_angle.c:147:14: warning: unused variable 'buf' [-Wunused-variable] char buf[80]; ^~~ ../../../src/tools/gmx_angle.c:143:38: warning: unused variable 'fraction' [-Wunused-variable] real t,aa,aver,aver2,aversig,fraction; /* fraction trans dihedrals */ ^~~~~~~~ ../../../src/tools/gmx_angle.c:143:16: warning: unused variable 'aa' [-Wunused-variable] real t,aa,aver,aver2,aversig,fraction; /* fraction trans dihedrals */ ^~ ../../../src/tools/gmx_angle.c:143:14: warning: unused variable 't' [-Wunused-variable] real t,aa,aver,aver2,aversig,fraction; /* fraction trans dihedrals */ ^ ../../../src/tools/gmx_angle.c:138:55: warning: unused variable 'angind' [-Wunused-variable] int i,j,total,nangles,natoms,nat2,first,last,angind; ^~~~~~ ../../../src/tools/gmx_angle.c:138:39: warning: unused variable 'nat2' [-Wunused-variable] int i,j,total,nangles,natoms,nat2,first,last,angind; ^~~~ ../../../src/tools/gmx_angle.c:138:32: warning: unused variable 'natoms' [-Wunused-variable] int i,j,total,nangles,natoms,nat2,first,last,angind; ^~~~~~ ../../../src/tools/gmx_angle.c:138:18: warning: unused variable 'total' [-Wunused-variable] int i,j,total,nangles,natoms,nat2,first,last,angind; ^~~~~ ../../../src/tools/gmx_angle.c:135:21: warning: unused variable 'Jc' [-Wunused-variable] real maxang,Jc,S2,norm_fac,maxstat; ^~ ../../../src/tools/gmx_angle.c:132:14: warning: unused variable 'status' [-Wunused-variable] int status,isize; ^~~~~~ ../../../src/tools/gmx_angle.c:131:14: warning: unused variable 'tmp' [-Wunused-variable] real tmp,dt; ^~~ In file included from ../../../src/tools/gmx_angle.c:49: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_angle.c:49: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/tools/gmx_angle.c:48: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_angle.c:47: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_bundle.lo ../../../src/tools/gmx_bundle.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_bundle.c -fPIC -DPIC -o .libs/gmx_bundle.o ../../../src/tools/gmx_bundle.c: In function 'dump_axes': ../../../src/tools/gmx_bundle.c:141:17: warning: unused variable 'end' [-Wunused-variable] int i,end; ^~~ ../../../src/tools/gmx_bundle.c: In function 'gmx_bundle': ../../../src/tools/gmx_bundle.c:210:16: warning: unused variable 'j' [-Wunused-variable] int i,j,gnx[MAX_ENDS]; ^ ../../../src/tools/gmx_bundle.c:208:14: warning: unused variable 'natoms' [-Wunused-variable] int natoms; ^~~~~~ ../../../src/tools/gmx_bundle.c:198:15: warning: unused variable 'out' [-Wunused-variable] FILE *out,*flen,*fdist,*fz,*ftilt,*ftiltr,*ftiltl; ^~~ In file included from ../../../src/tools/gmx_bundle.c:48: At top level: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_bundle.c:47: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_bundle.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_bundle.c:42: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_analyze.lo ../../../src/tools/gmx_analyze.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_analyze.c -fPIC -DPIC -o .libs/gmx_analyze.o ../../../src/tools/gmx_analyze.c: In function 'luzar_correl': ../../../src/tools/gmx_analyze.c:514:8: warning: unused variable 'weight' [-Wunused-variable] real weight,d2; ^~~~~~ ../../../src/tools/gmx_analyze.c:512:14: warning: unused variable 'tol' [-Wunused-variable] const real tol = 1e-8; ^~~ ../../../src/tools/gmx_analyze.c: In function 'gmx_analyze': ../../../src/tools/gmx_analyze.c:744:63: warning: unused variable 'bLuzarError' [-Wunused-variable] static bool bIntegrate=FALSE,bRegression=FALSE,bLuzar=FALSE,bLuzarError=FALSE; ^~~~~~~~~~~ At top level: ../../../src/tools/gmx_analyze.c:744:63: warning: 'bLuzarError' defined but not used [-Wunused-variable] ../../../src/tools/gmx_analyze.c:273:13: warning: 'anal_ee' defined but not used [-Wunused-function] static real anal_ee(real *parm,real T,real t) ^~~~~~~ In file included from ../../../src/tools/gmx_analyze.c:48: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_analyze.c:47: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_analyze.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_analyze.c:41: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nsc.lo ../../../src/tools/nsc.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/nsc.c -fPIC -DPIC -o .libs/nsc.o ../../../src/tools/nsc.c: In function 'make_unsp': ../../../src/tools/nsc.c:446:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (xpunsp) free(xpunsp); if (ico_wk) free(ico_wk); ^~ ../../../src/tools/nsc.c:446:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (xpunsp) free(xpunsp); if (ico_wk) free(ico_wk); ^~ ../../../src/tools/nsc.c: In function 'nsc_dclm_pbc': ../../../src/tools/nsc.c:652:21: warning: unused variable 'm' [-Wunused-variable] int ix,iy,iz,m; ^ ../../../src/tools/nsc.c:551:16: warning: unused variable 'jat_xx' [-Wunused-variable] int iat_xx,jat_xx; ^~~~~~ In file included from ../../../src/tools/nsc.c:48: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/nsc.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_covar.lo ../../../src/tools/gmx_covar.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_covar.c -fPIC -DPIC -o .libs/gmx_covar.o ../../../src/tools/gmx_covar.c: In function 'gmx_covar': ../../../src/tools/gmx_covar.c:120:30: warning: unused variable 'count' [-Wunused-variable] int natoms,nat,ndim,count,nframes0,nframes,nlevels; ^~~~~ ../../../src/tools/gmx_covar.c:119:24: warning: unused variable 'step' [-Wunused-variable] int ntopatoms,step; ^~~~ ../../../src/tools/gmx_covar.c:119:14: warning: unused variable 'ntopatoms' [-Wunused-variable] int ntopatoms,step; ^~~~~~~~~ ../../../src/tools/gmx_covar.c:109:21: warning: unused variable 'trjout' [-Wunused-variable] int status,trjout; ^~~~~~ In file included from ../../../src/tools/gmx_covar.c:50: At top level: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_covar.c:48: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_covar.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_covar.c:43: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_confrms.lo ../../../src/tools/gmx_confrms.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_confrms.c -fPIC -DPIC -o .libs/gmx_confrms.o ../../../src/tools/gmx_confrms.c: In function 'find_matching_names': ../../../src/tools/gmx_confrms.c:252:35: warning: unused variable 'atnm2' [-Wunused-variable] char *resnm1, *resnm2, *atnm1, *atnm2; ^~~~~ ../../../src/tools/gmx_confrms.c:252:27: warning: unused variable 'atnm1' [-Wunused-variable] char *resnm1, *resnm2, *atnm1, *atnm2; ^~~~~ ../../../src/tools/gmx_confrms.c:252:18: warning: unused variable 'resnm2' [-Wunused-variable] char *resnm1, *resnm2, *atnm1, *atnm2; ^~~~~~ ../../../src/tools/gmx_confrms.c:252:9: warning: unused variable 'resnm1' [-Wunused-variable] char *resnm1, *resnm2, *atnm1, *atnm2; ^~~~~~ ../../../src/tools/gmx_confrms.c:249:7: warning: unused variable 'r' [-Wunused-variable] int r,rnr1, rnr2, prnr1, prnr2; ^ ../../../src/tools/gmx_confrms.c:247:7: warning: unused variable 'i' [-Wunused-variable] int i, i1, i2, ii1, ii2, m1, m2; ^ ../../../src/tools/gmx_confrms.c: In function 'gmx_confrms': ../../../src/tools/gmx_confrms.c:407:17: warning: unused variable 'tmas2' [-Wunused-variable] real tmas1,tmas2; ^~~~~ ../../../src/tools/gmx_confrms.c:407:11: warning: unused variable 'tmas1' [-Wunused-variable] real tmas1,tmas2; ^~~~~ ../../../src/tools/gmx_confrms.c:404:13: warning: unused variable 'j' [-Wunused-variable] int i,j,m; ^ In file included from ../../../src/tools/gmx_confrms.c:56: At top level: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/tools/gmx_confrms.c:50: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_confrms.c:50: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_confrms.c:47: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_confrms.c:46: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_density.lo ../../../src/tools/gmx_density.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_density.c -fPIC -DPIC -o .libs/gmx_density.o ../../../src/tools/gmx_density.c: In function 'calc_density': ../../../src/tools/gmx_density.c:261:9: warning: unused variable 'buf' [-Wunused-variable] char *buf; /* for tmp. keeping atomname */ ^~~ ../../../src/tools/gmx_density.c:254:9: warning: unused variable 'j' [-Wunused-variable] i,j,n, /* loop indices */ ^ ../../../src/tools/gmx_density.c:253:9: warning: unused variable 'slCount' [-Wunused-variable] **slCount, /* nr. of atoms in one slice for a group */ ^~~~~~~ In file included from ../../../src/tools/gmx_density.c:52: At top level: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_density.c:49: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_density.c:49: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/tools/gmx_density.c:48: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_anaeig.lo ../../../src/tools/gmx_anaeig.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_anaeig.c -fPIC -DPIC -o .libs/gmx_anaeig.o ../../../src/tools/gmx_anaeig.c: In function 'calc_entropy_schlitter': ../../../src/tools/gmx_anaeig.c:98:10: warning: unused variable 'buf' [-Wunused-variable] char buf[256]; ^~~ ../../../src/tools/gmx_anaeig.c:97:16: warning: unused variable 'm' [-Wunused-variable] int i,j,k,m; ^ ../../../src/tools/gmx_anaeig.c:97:14: warning: unused variable 'k' [-Wunused-variable] int i,j,k,m; ^ ../../../src/tools/gmx_anaeig.c:97:12: warning: unused variable 'j' [-Wunused-variable] int i,j,k,m; ^ ../../../src/tools/gmx_anaeig.c:96:11: warning: unused variable 'indx' [-Wunused-variable] int *indx; ^~~~ ../../../src/tools/gmx_anaeig.c: In function 'compare': ../../../src/tools/gmx_anaeig.c:224:12: warning: unused variable 'nrow' [-Wunused-variable] int n,nrow; ^~~~ ../../../src/tools/gmx_anaeig.c: In function 'rmsf': ../../../src/tools/gmx_anaeig.c:692:9: warning: unused variable 'nrow' [-Wunused-variable] int nrow,g,v,i; ^~~~ ../../../src/tools/gmx_anaeig.c: In function 'gmx_anaeig': ../../../src/tools/gmx_anaeig.c:1015:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (i!=natoms) ^~ ../../../src/tools/gmx_anaeig.c:1017:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' printf("\n"); ^~~~~~ ../../../src/tools/gmx_anaeig.c:835:21: warning: unused variable 'step' [-Wunused-variable] int natoms,step; ^~~~ ../../../src/tools/gmx_anaeig.c:834:42: warning: unused variable 'lambda' [-Wunused-variable] real xid,totmass,*sqrtm,*w_rls,t,lambda; ^~~~~~ ../../../src/tools/gmx_anaeig.c:834:14: warning: unused variable 'xid' [-Wunused-variable] real xid,totmass,*sqrtm,*w_rls,t,lambda; ^~~ ../../../src/tools/gmx_anaeig.c:832:18: warning: unused variable 'xread' [-Wunused-variable] rvec *x,*xread,*xav1,*xav2,**eigvec1=NULL,**eigvec2=NULL; ^~~~~ ../../../src/tools/gmx_anaeig.c:832:15: warning: unused variable 'x' [-Wunused-variable] rvec *x,*xread,*xav1,*xav2,**eigvec1=NULL,**eigvec2=NULL; ^ ../../../src/tools/gmx_anaeig.c:825:21: warning: unused variable 'trjout' [-Wunused-variable] int status,trjout; ^~~~~~ ../../../src/tools/gmx_anaeig.c:825:14: warning: unused variable 'status' [-Wunused-variable] int status,trjout; ^~~~~~ ../../../src/tools/gmx_anaeig.c:824:15: warning: unused variable 'out' [-Wunused-variable] FILE *out; ^~~ In file included from ../../../src/tools/gmx_anaeig.c:53: At top level: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ In file included from ../../../src/tools/gmx_anaeig.c:49: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_anaeig.c:47: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_anaeig.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_anaeig.c:41: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_chi.lo ../../../src/tools/gmx_chi.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_chi.c -fPIC -DPIC -o .libs/gmx_chi.o ../../../src/tools/gmx_chi.c: In function 'histogramming': ../../../src/tools/gmx_chi.c:418:23: warning: unused variable 'his_aa1' [-Wunused-variable] int ***his_aa,**his_aa1,*histmp; ^~~~~~~ ../../../src/tools/gmx_chi.c: In function 'print_transitions': ../../../src/tools/gmx_chi.c:834:8: warning: variable 'nh' set but not used [-Wunused-but-set-variable] int nh[edMax]; ^~ ../../../src/tools/gmx_chi.c: In function 'gmx_chi': ../../../src/tools/gmx_chi.c:1098:16: warning: unused variable 'j' [-Wunused-variable] int i,j,**chi_lookup,*xity; ^ In file included from ../../../src/tools/gmx_chi.c:59: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../src/tools/gmx_chi.c:49: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/tools/gmx_chi.c:47: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_chi.c:44: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_chi.c:43: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../src/tools/gmx_chi.c: In function 'histogramming.isra.1': ../../../src/tools/gmx_chi.c:657:30: warning: '.xvg' directive writing 4 bytes into a region of size between 0 and 255 [-Wformat-overflow=] sprintf(sshisfile,"%s-%s.xvg",hisfile,sss[k]); ^~~~ In file included from /usr/include/stdio.h:862, from ../../../src/tools/gmx_chi.c:39: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 6 or more bytes (assuming 261) into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_current.lo ../../../src/tools/gmx_current.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_current.c -fPIC -DPIC -o .libs/gmx_current.o ../../../src/tools/gmx_current.c: In function 'calc_mjdsp': ../../../src/tools/gmx_current.c:266:7: warning: unused variable 'rfr' [-Wunused-variable] real rfr; ^~~ ../../../src/tools/gmx_current.c:265:8: warning: unused variable 'rtmp' [-Wunused-variable] real rtmp; ^~~~ ../../../src/tools/gmx_current.c: In function 'dielectric': ../../../src/tools/gmx_current.c:338:8: warning: variable 'rest' set but not used [-Wunused-but-set-variable] real rest=0.0; ^~~~ ../../../src/tools/gmx_current.c:326:8: warning: unused variable 'qtmp' [-Wunused-variable] real qtmp; ^~~~ ../../../src/tools/gmx_current.c:308:13: warning: unused variable 'dm_d' [-Wunused-variable] real dm_s,dm_d; ^~~~ ../../../src/tools/gmx_current.c:308:8: warning: unused variable 'dm_s' [-Wunused-variable] real dm_s,dm_d; ^~~~ ../../../src/tools/gmx_current.c:298:8: warning: unused variable 'rfr' [-Wunused-variable] real rfr=0.0; ^~~ ../../../src/tools/gmx_current.c:293:33: warning: variable 'itrust' set but not used [-Wunused-but-set-variable] int valloc,nalloc,nfr,nvfr,m,itrust=0; ^~~~~~ ../../../src/tools/gmx_current.c:293:31: warning: unused variable 'm' [-Wunused-variable] int valloc,nalloc,nfr,nvfr,m,itrust=0; ^ ../../../src/tools/gmx_current.c:292:17: warning: unused variable 'f' [-Wunused-variable] int i,j,k,l,f; ^ ../../../src/tools/gmx_current.c:292:15: warning: unused variable 'l' [-Wunused-variable] int i,j,k,l,f; ^ ../../../src/tools/gmx_current.c:292:13: warning: unused variable 'k' [-Wunused-variable] int i,j,k,l,f; ^ ../../../src/tools/gmx_current.c: In function 'gmx_current': ../../../src/tools/gmx_current.c:720:15: warning: unused variable 'tfile' [-Wunused-variable] FILE *tfile=NULL; ^~~~~ ../../../src/tools/gmx_current.c:719:15: warning: unused variable 'outi' [-Wunused-variable] FILE *outi=NULL; ^~~~ ../../../src/tools/gmx_current.c:716:14: warning: unused variable 'lambda' [-Wunused-variable] real lambda; ^~~~~~ ../../../src/tools/gmx_current.c:715:13: warning: unused variable 't' [-Wunused-variable] real t; ^ ../../../src/tools/gmx_current.c:714:14: warning: unused variable 'step' [-Wunused-variable] int step; ^~~~ ../../../src/tools/gmx_current.c:713:21: warning: unused variable 'l' [-Wunused-variable] int i,j,k=0,l; ^ ../../../src/tools/gmx_current.c:713:17: warning: unused variable 'k' [-Wunused-variable] int i,j,k=0,l; ^ ../../../src/tools/gmx_current.c:713:15: warning: unused variable 'j' [-Wunused-variable] int i,j,k=0,l; ^ ../../../src/tools/gmx_current.c:711:12: warning: unused variable 'natoms' [-Wunused-variable] int natoms; ^~~~~~ ../../../src/tools/gmx_current.c:707:10: warning: variable 'bNEU' set but not used [-Wunused-but-set-variable] bool bNEU; ^~~~ ../../../src/tools/gmx_current.c:706:13: warning: variable 'bTop' set but not used [-Wunused-but-set-variable] bool bTop; ^~~~ In file included from ../../../src/tools/gmx_current.c:44: At top level: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_current.c:43: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_current.c:43: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_current.c:40: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_densmap.lo ../../../src/tools/gmx_densmap.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_densmap.c -fPIC -DPIC -o .libs/gmx_densmap.o In file included from ../../../src/tools/gmx_densmap.c:50: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_densmap.c:48: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_densmap.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_densmap.c:43: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_dih.lo ../../../src/tools/gmx_dih.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_dih.c -fPIC -DPIC -o .libs/gmx_dih.o ../../../src/tools/gmx_dih.c:55:13: warning: 'dump_dih' defined but not used [-Wunused-function] static void dump_dih(int nframes,char *title,real time[],real dih[]) ^~~~~~~~ In file included from ../../../src/tools/gmx_dih.c:51: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_dih.c:51: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_dih.c:46: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_dih.c:43: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ ../../../src/tools/gmx_dih.c: In function 'gmx_dih': ../../../src/tools/gmx_dih.c:265:22: warning: '%d' directive writing between 1 and 10 bytes into a region of size 6 [-Wformat-overflow=] sprintf(buf,"dih-%d",i); ^~ ../../../src/tools/gmx_dih.c:265:17: note: directive argument in the range [0, 2147483647] sprintf(buf,"dih-%d",i); ^~~~~~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../src/tools/gmx_dih.c:41: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 6 and 15 bytes into a destination of size 10 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_dielectric.lo ../../../src/tools/gmx_dielectric.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_dielectric.c -fPIC -DPIC -o .libs/gmx_dielectric.o ../../../src/tools/gmx_dielectric.c: In function 'calc_nbegin': ../../../src/tools/gmx_dielectric.c:60:11: warning: unused variable 'dtt' [-Wunused-variable] real dt,dtt; ^~~ ../../../src/tools/gmx_dielectric.c:60:8: warning: unused variable 'dt' [-Wunused-variable] real dt,dtt; ^~ In file included from ../../../src/tools/gmx_dielectric.c:53: At top level: ../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function] static t_complex csub(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function] static t_complex cadd(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function] static t_complex rcexp(real r) ^~~~~ ../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable] static t_complex cnul = { 0.0, 0.0 }; ^~~~ In file included from ../../../src/tools/gmx_dielectric.c:51: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/tools/gmx_dielectric.c:47: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_dielectric.c:44: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_spatial.lo ../../../src/tools/gmx_spatial.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_spatial.c -fPIC -DPIC -o .libs/gmx_spatial.o ../../../src/tools/gmx_spatial.c: In function 'gmx_spatial': ../../../src/tools/gmx_spatial.c:131:21: warning: unused variable 'shx' [-Wunused-variable] rvec *xtop,*shx[26]; ^~~ ../../../src/tools/gmx_spatial.c:103:15: warning: unused variable 'bSHIFT' [-Wunused-variable] static bool bSHIFT=FALSE; ^~~~~~ At top level: ../../../src/tools/gmx_spatial.c:103:15: warning: 'bSHIFT' defined but not used [-Wunused-variable] In file included from ../../../src/tools/gmx_spatial.c:44: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_spatial.c:43: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_spatial.c:43: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_spatial.c:40: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ ../../../src/tools/gmx_spatial.c:38:14: warning: 'SRCID_template_c' defined but not used [-Wunused-variable] static char *SRCID_template_c = "$Id$"; ^~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_dist.lo ../../../src/tools/gmx_dist.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_dist.c -fPIC -DPIC -o .libs/gmx_dist.o ../../../src/tools/gmx_dist.c: In function 'gmx_dist': ../../../src/tools/gmx_dist.c:101:21: warning: unused variable 'fplt' [-Wunused-variable] FILE *fp=NULL,*fplt=NULL; ^~~~ ../../../src/tools/gmx_dist.c:93:11: warning: unused variable 'aid' [-Wunused-variable] atom_id aid; ^~~ ../../../src/tools/gmx_dist.c:87:17: warning: unused variable 'v' [-Wunused-variable] rvec *x=NULL,*v=NULL,dx; ^ In file included from ../../../src/tools/gmx_dist.c:48: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_dist.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_dist.c:46: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_dist.c:45: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_cluster.lo ../../../src/tools/gmx_cluster.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_cluster.c -fPIC -DPIC -o .libs/gmx_cluster.o ../../../src/tools/gmx_cluster.c: In function 'mark_clusters': ../../../src/tools/gmx_cluster.c:638:11: warning: unused variable 'v' [-Wunused-variable] int i,j,v; ^ ../../../src/tools/gmx_cluster.c: In function 'gmx_cluster': ../../../src/tools/gmx_cluster.c:1341:7: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(i=0; (ipdbinfo[ii0].pdbresnr,"%d",r0+1); ^~ ../../../src/tools/gmx_sas.c:152:44: note: directive argument in the range [-2147483647, 2147483647] sprintf(atoms->pdbinfo[ii0].pdbresnr,"%d",r0+1); ^~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../src/tools/gmx_sas.c:42: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 2 and 12 bytes into a destination of size 6 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_rmsdist.lo ../../../src/tools/gmx_rmsdist.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_rmsdist.c -fPIC -DPIC -o .libs/gmx_rmsdist.o ../../../src/tools/gmx_rmsdist.c: In function 'analyze_noe_equivalent': ../../../src/tools/gmx_rmsdist.c:249:11: warning: unused variable 'fp' [-Wunused-variable] FILE *fp; ^~ ../../../src/tools/gmx_rmsdist.c: In function 'gmx_rmsdist': ../../../src/tools/gmx_rmsdist.c:534:36: warning: unused variable 'gj' [-Wunused-variable] int natom,i,j,teller,gi,gj; ^~ ../../../src/tools/gmx_rmsdist.c:534:33: warning: unused variable 'gi' [-Wunused-variable] int natom,i,j,teller,gi,gj; ^~ ../../../src/tools/gmx_rmsdist.c:534:24: warning: unused variable 'j' [-Wunused-variable] int natom,i,j,teller,gi,gj; ^ In file included from ../../../src/tools/gmx_rmsdist.c:52: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_rmsdist.c:52: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_rmsdist.c:48: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_rmsdist.c:47: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_rdf.lo ../../../src/tools/gmx_rdf.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_rdf.c -fPIC -DPIC -o .libs/gmx_rdf.o ../../../src/tools/gmx_rdf.c: In function 'do_rdf': ../../../src/tools/gmx_rdf.c:168:23: warning: unused variable 'index_cm' [-Wunused-variable] atom_id **index,*index_cm=NULL; ^~~~~~~~ ../../../src/tools/gmx_rdf.c:167:21: warning: unused variable 'isize_cm' [-Wunused-variable] int *isize,isize_cm=0,nrdf=0,max_i,isize0,isize_g; ^~~~~~~~ ../../../src/tools/gmx_rdf.c:164:40: warning: unused variable 'n' [-Wunused-variable] int g,natoms,i,j,k,nbin,j0,j1,n,nframes; ^ ../../../src/tools/gmx_rdf.c:164:37: warning: unused variable 'j1' [-Wunused-variable] int g,natoms,i,j,k,nbin,j0,j1,n,nframes; ^~ ../../../src/tools/gmx_rdf.c:164:34: warning: unused variable 'j0' [-Wunused-variable] int g,natoms,i,j,k,nbin,j0,j1,n,nframes; ^~ ../../../src/tools/gmx_rdf.c:162:28: warning: unused variable 'outf2' [-Wunused-variable] char outf1[STRLEN],outf2[STRLEN]; ^~~~~ ../../../src/tools/gmx_rdf.c:162:14: warning: unused variable 'outf1' [-Wunused-variable] char outf1[STRLEN],outf2[STRLEN]; ^~~~~ In file included from ../../../include/fftgrid.h:46, from ../../../src/tools/gmx_rdf.c:57: At top level: ../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function] static t_complex cdiv(t_complex teller,t_complex noemer) ^~~~ ../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function] static t_complex csub(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function] static t_complex cadd(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function] static t_complex rcexp(real r) ^~~~~ ../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable] static t_complex cnul = { 0.0, 0.0 }; ^~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_rdf.c:52: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_rdf.c:50: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_rdf.c:47: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_rdf.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_rms.lo ../../../src/tools/gmx_rms.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_rms.c -fPIC -DPIC -o .libs/gmx_rms.o In file included from ../../../src/tools/gmx_rms.c:49: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_rms.c:49: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_rms.c:47: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_rms.c:46: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_sgangle.lo ../../../src/tools/gmx_sgangle.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_sgangle.c -fPIC -DPIC -o .libs/gmx_sgangle.o In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_sgangle.c:52: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_sgangle.c:50: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_sgangle.c:47: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_sgangle.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_sorient.lo ../../../src/tools/gmx_sorient.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_sorient.c -fPIC -DPIC -o .libs/gmx_sorient.o ../../../src/tools/gmx_sorient.c: In function 'gmx_sorient': ../../../src/tools/gmx_sorient.c:114:72: warning: unused variable 'mtot' [-Wunused-variable] real inp,outp,two_pi,nav,normfac,rmin2,rmax2,rcut,rcut2,r2,r,mass,mtot; ^~~~ ../../../src/tools/gmx_sorient.c:114:67: warning: unused variable 'mass' [-Wunused-variable] real inp,outp,two_pi,nav,normfac,rmin2,rmax2,rcut,rcut2,r2,r,mass,mtot; ^~~~ ../../../src/tools/gmx_sorient.c:114:20: warning: variable 'two_pi' set but not used [-Wunused-but-set-variable] real inp,outp,two_pi,nav,normfac,rmin2,rmax2,rcut,rcut2,r2,r,mass,mtot; ^~~~~~ ../../../src/tools/gmx_sorient.c:108:13: warning: unused variable 'j' [-Wunused-variable] int i,j,p,sa0,sa1,sa2,n,ntot,nf,m,*hist1,*hist2,*histn,nbin1,nbin2,nrbin; ^ In file included from ../../../src/tools/gmx_sorient.c:45: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_sorient.c:45: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/tools/gmx_sorient.c:43: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_sorient.c:41: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_sdf.lo ../../../src/tools/gmx_sdf.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_sdf.c -fPIC -DPIC -o .libs/gmx_sdf.o ../../../src/tools/gmx_sdf.c: In function 'do_sdf': ../../../src/tools/gmx_sdf.c:101:25: warning: unused variable 'bRefDone' [-Wunused-variable] bool bTop=FALSE,bRefDone=FALSE,bInGroup=FALSE; ^~~~~~~~ ../../../src/tools/gmx_sdf.c:97:17: warning: unused variable 'jx' [-Wunused-variable] atom_id ix,jx; ^~ ../../../src/tools/gmx_sdf.c:97:14: warning: unused variable 'ix' [-Wunused-variable] atom_id ix,jx; ^~ ../../../src/tools/gmx_sdf.c:92:17: warning: unused variable 'xcog' [-Wunused-variable] rvec *x,xcog,dx,*x_i1,xi,*x_refmol; ^~~~ ../../../src/tools/gmx_sdf.c:89:23: warning: variable 'hbox' set but not used [-Wunused-but-set-variable] real t,boxmin,hbox,normfac; ^~~~ ../../../src/tools/gmx_sdf.c:88:15: warning: unused variable 'index_ref' [-Wunused-variable] atom_id *index_ref=NULL; ^~~~~~~~~ ../../../src/tools/gmx_sdf.c:87:15: warning: unused variable 'index_cg' [-Wunused-variable] atom_id *index_cg=NULL; ^~~~~~~~ ../../../src/tools/gmx_sdf.c:85:24: warning: unused variable 'refc' [-Wunused-variable] int nrefmol=0,refc=0; ^~~~ ../../../src/tools/gmx_sdf.c:83:14: warning: unused variable 'isize_ref' [-Wunused-variable] int isize_ref=3; ^~~~~~~~~ ../../../src/tools/gmx_sdf.c:82:14: warning: unused variable 'isize_cg' [-Wunused-variable] int isize_cg=0; ^~~~~~~~ ../../../src/tools/gmx_sdf.c:75:41: warning: unused variable 'dest' [-Wunused-variable] int ng,natoms,i,j,k,l,X,Y,Z,lc,dest; ^~~~ ../../../src/tools/gmx_sdf.c:75:38: warning: unused variable 'lc' [-Wunused-variable] int ng,natoms,i,j,k,l,X,Y,Z,lc,dest; ^~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_sdf.c:33: At top level: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_sdf.c:31: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_sdf.c:28: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_sdf.c:28: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ ../../../src/tools/gmx_sdf.c:20:14: warning: 'SRCID_template_c' defined but not used [-Wunused-variable] static char *SRCID_template_c = "$Id$"; ^~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_spol.lo ../../../src/tools/gmx_spol.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_spol.c -fPIC -DPIC -o .libs/gmx_spol.o ../../../src/tools/gmx_spol.c: In function 'gmx_spol': ../../../src/tools/gmx_spol.c:165:28: warning: unused variable 'bPBC' [-Wunused-variable] static bool bCom = FALSE,bPBC = FALSE; ^~~~ ../../../src/tools/gmx_spol.c:131:13: warning: unused variable 'xtop' [-Wunused-variable] rvec *xtop,*x,xref,try,dx,dip,dir; ^~~~ ../../../src/tools/gmx_spol.c:127:12: warning: unused variable 'title' [-Wunused-variable] char title[STRLEN]; ^~~~~ At top level: ../../../src/tools/gmx_spol.c:165:28: warning: 'bPBC' defined but not used [-Wunused-variable] static bool bCom = FALSE,bPBC = FALSE; ^~~~ In file included from ../../../src/tools/gmx_spol.c:45: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_spol.c:45: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/tools/gmx_spol.c:43: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_spol.c:41: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_hbond.lo ../../../src/tools/gmx_hbond.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_hbond.c -fPIC -DPIC -o .libs/gmx_hbond.o ../../../src/tools/gmx_hbond.c: In function 'mk_hbmap': ../../../src/tools/gmx_hbond.c:182:10: warning: unused variable 'j' [-Wunused-variable] int i,j; ^ ../../../src/tools/gmx_hbond.c: In function 'add_frames': ../../../src/tools/gmx_hbond.c:194:14: warning: unused variable 'l' [-Wunused-variable] int i,j,k,l; ^ ../../../src/tools/gmx_hbond.c:194:12: warning: unused variable 'k' [-Wunused-variable] int i,j,k,l; ^ ../../../src/tools/gmx_hbond.c:194:10: warning: unused variable 'j' [-Wunused-variable] int i,j,k,l; ^ ../../../src/tools/gmx_hbond.c:194:8: warning: unused variable 'i' [-Wunused-variable] int i,j,k,l; ^ ../../../src/tools/gmx_hbond.c: In function 'search_donors': ../../../src/tools/gmx_hbond.c:543:14: warning: unused variable 'stop' [-Wunused-variable] bool stop; ^~~~ ../../../src/tools/gmx_hbond.c:539:22: warning: unused variable 'n' [-Wunused-variable] int i,j,nra,n; ^ ../../../src/tools/gmx_hbond.c:539:18: warning: unused variable 'nra' [-Wunused-variable] int i,j,nra,n; ^~~ ../../../src/tools/gmx_hbond.c: In function 'is_hbond': ../../../src/tools/gmx_hbond.c:900:19: warning: unused variable 'ihb' [-Wunused-variable] int h,hh,id,ja,ihb; ^~~ ../../../src/tools/gmx_hbond.c: In function 'merge_hb': ../../../src/tools/gmx_hbond.c:1021:44: warning: unused variable 'ogrp' [-Wunused-variable] int i,inrnew,indnew,j,ii,jj,m,id,ia,grp,ogrp,ntmp; ^~~~ ../../../src/tools/gmx_hbond.c:1021:40: warning: unused variable 'grp' [-Wunused-variable] int i,inrnew,indnew,j,ii,jj,m,id,ia,grp,ogrp,ntmp; ^~~ ../../../src/tools/gmx_hbond.c:1021:32: warning: unused variable 'm' [-Wunused-variable] int i,inrnew,indnew,j,ii,jj,m,id,ia,grp,ogrp,ntmp; ^ ../../../src/tools/gmx_hbond.c: In function 'do_nhb_dist': ../../../src/tools/gmx_hbond.c:1077:8: warning: unused variable 'nhb' [-Wunused-variable] h_id nhb; ^~~ ../../../src/tools/gmx_hbond.c: In function 'smooth_tail': ../../../src/tools/gmx_hbond.c:1439:9: warning: unused variable 'fp' [-Wunused-variable] FILE *fp; ^~ ../../../src/tools/gmx_hbond.c: In function 'analyse_corr': ../../../src/tools/gmx_hbond.c:1461:56: warning: unused variable 'dt' [-Wunused-variable] real Q=0,chi22,chi2,dg,dgp,tau_hb,dtau,tau_rlx,e_1,dt,sigma_k,sigma_kp,ddg; ^~ ../../../src/tools/gmx_hbond.c:1461:28: warning: unused variable 'dgp' [-Wunused-variable] real Q=0,chi22,chi2,dg,dgp,tau_hb,dtau,tau_rlx,e_1,dt,sigma_k,sigma_kp,ddg; ^~~ ../../../src/tools/gmx_hbond.c:1461:25: warning: unused variable 'dg' [-Wunused-variable] real Q=0,chi22,chi2,dg,dgp,tau_hb,dtau,tau_rlx,e_1,dt,sigma_k,sigma_kp,ddg; ^~ ../../../src/tools/gmx_hbond.c:1461:14: warning: variable 'chi22' set but not used [-Wunused-but-set-variable] real Q=0,chi22,chi2,dg,dgp,tau_hb,dtau,tau_rlx,e_1,dt,sigma_k,sigma_kp,ddg; ^~~~~ ../../../src/tools/gmx_hbond.c: In function 'do_hbac': ../../../src/tools/gmx_hbond.c:1585:27: warning: variable 'ngh' set but not used [-Wunused-but-set-variable] int nh,nhbonds,nhydro,ngh; ^~~ ../../../src/tools/gmx_hbond.c:1577:18: warning: unused variable 'nd' [-Wunused-variable] int i,j,k,m,n,nd,ihb,idist,n2,nn; ^~ ../../../src/tools/gmx_hbond.c:1577:16: warning: unused variable 'n' [-Wunused-variable] int i,j,k,m,n,nd,ihb,idist,n2,nn; ^ ../../../src/tools/gmx_hbond.c: In function 'gmx_hbond': ../../../src/tools/gmx_hbond.c:2051:30: warning: unused variable 'bin' [-Wunused-variable] int grp,nabin,nrbin,bin,resdist,ihb; ^~~ ../../../src/tools/gmx_hbond.c:2049:43: warning: unused variable 'was' [-Wunused-variable] bool bSelected,bHBmap,bStop,bTwo,new,was,bBox,bTric; ^~~ ../../../src/tools/gmx_hbond.c:2049:39: warning: unused variable 'new' [-Wunused-variable] bool bSelected,bHBmap,bStop,bTwo,new,was,bBox,bTric; ^~~ ../../../src/tools/gmx_hbond.c:2045:34: warning: unused variable 'ja' [-Wunused-variable] int h,i,j,k,l,start,end,id,ja,ogrp,nsel; ^~ ../../../src/tools/gmx_hbond.c:2045:31: warning: unused variable 'id' [-Wunused-variable] int h,i,j,k,l,start,end,id,ja,ogrp,nsel; ^~ ../../../src/tools/gmx_hbond.c:2045:27: warning: unused variable 'end' [-Wunused-variable] int h,i,j,k,l,start,end,id,ja,ogrp,nsel; ^~~ ../../../src/tools/gmx_hbond.c:2045:21: warning: unused variable 'start' [-Wunused-variable] int h,i,j,k,l,start,end,id,ja,ogrp,nsel; ^~~~~ ../../../src/tools/gmx_hbond.c:2045:19: warning: unused variable 'l' [-Wunused-variable] int h,i,j,k,l,start,end,id,ja,ogrp,nsel; ^ At top level: ../../../src/tools/gmx_hbond.c:372:13: warning: 'in_list' defined but not used [-Wunused-function] static bool in_list(atom_id selection,int isize,atom_id *index) ^~~~~~~ In file included from ../../../include/gmx_fft.h:41, from ../../../src/tools/correl.h:40, from ../../../src/tools/gmx_hbond.c:59: ../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function] static t_complex cdiv(t_complex teller,t_complex noemer) ^~~~ ../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function] static t_complex csub(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function] static t_complex cadd(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function] static t_complex rcexp(real r) ^~~~~ ../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable] static t_complex cnul = { 0.0, 0.0 }; ^~~~ In file included from ../../../src/tools/gmx_hbond.c:53: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_hbond.c:53: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/tools/gmx_hbond.c:43: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_hbond.c:42: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_tcaf.lo ../../../src/tools/gmx_tcaf.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_tcaf.c -fPIC -DPIC -o .libs/gmx_tcaf.o ../../../src/tools/gmx_tcaf.c: In function 'gmx_tcaf': ../../../src/tools/gmx_tcaf.c:274:16: warning: unused variable 'c1' [-Wunused-variable] real **c1,**tc; ^~ ../../../src/tools/gmx_tcaf.c:265:14: warning: unused variable 'bTPS' [-Wunused-variable] bool bTPS,bTop; /* ,bCubic; */ ^~~~ In file included from ../../../src/tools/gmx_tcaf.c:57: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../src/tools/gmx_tcaf.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/tools/gmx_tcaf.c:46: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_tcaf.c:43: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_velacc.lo ../../../src/tools/gmx_velacc.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_velacc.c -fPIC -DPIC -o .libs/gmx_velacc.o In file included from ../../../src/tools/gmx_velacc.c:57: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../src/tools/gmx_velacc.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/tools/gmx_velacc.c:46: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_velacc.c:43: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o correl.lo ../../../src/tools/correl.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/correl.c -fPIC -DPIC -o .libs/correl.o ../../../src/tools/correl.c: In function 'complex_mult': ../../../src/tools/correl.c:189:10: warning: unused variable 'no2' [-Wunused-variable] int i,no2,n_2,k; ^~~ In file included from ../../../include/gmx_fft.h:41, from ../../../src/tools/correl.c:43: At top level: ../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function] static t_complex cdiv(t_complex teller,t_complex noemer) ^~~~ ../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function] static t_complex csub(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function] static t_complex cadd(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function] static t_complex rcexp(real r) ^~~~~ ../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable] static t_complex cnul = { 0.0, 0.0 }; ^~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_mdmat.lo ../../../src/tools/gmx_mdmat.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_mdmat.c -fPIC -DPIC -o .libs/gmx_mdmat.o ../../../src/tools/gmx_mdmat.c: In function 'gmx_mdmat': ../../../src/tools/gmx_mdmat.c:193:14: warning: unused variable 'nr0' [-Wunused-variable] int nr0; ^~~ ../../../src/tools/gmx_mdmat.c:192:45: warning: unused variable 'it' [-Wunused-variable] int i,j,status,nres,natoms,nframes,it,trxnat; ^~ ../../../src/tools/gmx_mdmat.c:165:15: warning: unused variable 'bAtom' [-Wunused-variable] static bool bAtom=FALSE; ^~~~~ At top level: ../../../src/tools/gmx_mdmat.c:165:15: warning: 'bAtom' defined but not used [-Wunused-variable] In file included from ../../../src/tools/gmx_mdmat.c:49: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_mdmat.c:48: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_mdmat.c:44: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_mdmat.c:44: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_clustsize.lo ../../../src/tools/gmx_clustsize.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_clustsize.c -fPIC -DPIC -o .libs/gmx_clustsize.o ../../../src/tools/gmx_clustsize.c: In function 'clust_size': ../../../src/tools/gmx_clustsize.c:94:50: warning: unused variable 'n_y' [-Wunused-variable] int i,j,k,ai,aj,ak,ci,cj,nframe,nclust,n_x,n_y,max_size=0; ^~~ ../../../src/tools/gmx_clustsize.c:94:23: warning: unused variable 'ak' [-Wunused-variable] int i,j,k,ai,aj,ak,ci,cj,nframe,nclust,n_x,n_y,max_size=0; ^~ ../../../src/tools/gmx_clustsize.c:89:40: warning: unused variable 'nsame' [-Wunused-variable] int version,generation,sss,ii,jj,nsame; ^~~~~ ../../../src/tools/gmx_clustsize.c: In function 'gmx_clustsize': ../../../src/tools/gmx_clustsize.c:396:18: warning: unused variable 'bRDF' [-Wunused-variable] bool bSQ,bRDF; ^~~~ ../../../src/tools/gmx_clustsize.c:396:14: warning: unused variable 'bSQ' [-Wunused-variable] bool bSQ,bRDF; ^~~ In file included from ../../../include/pme.h:46, from ../../../src/tools/gmx_clustsize.c:62: At top level: ../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function] static t_complex cdiv(t_complex teller,t_complex noemer) ^~~~ ../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function] static t_complex csub(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function] static t_complex cadd(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function] static t_complex rcexp(real r) ^~~~~ ../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable] static t_complex cnul = { 0.0, 0.0 }; ^~~~ In file included from ../../../src/tools/gmx_clustsize.c:52: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_clustsize.c:50: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_clustsize.c:47: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_clustsize.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_helixorient.lo ../../../src/tools/gmx_helixorient.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_helixorient.c -fPIC -DPIC -o .libs/gmx_helixorient.o ../../../src/tools/gmx_helixorient.c: In function 'gmx_helixorient': ../../../src/tools/gmx_helixorient.c:125:14: warning: unused variable 'rotangle' [-Wunused-variable] real tmp,rotangle; ^~~~~~~~ ../../../src/tools/gmx_helixorient.c:107:10: warning: unused variable 'axes' [-Wunused-variable] rvec axes[3]; ^~~~ ../../../src/tools/gmx_helixorient.c:106:10: warning: unused variable 'axes_t0' [-Wunused-variable] rvec axes_t0[3]; ^~~~~~~ ../../../src/tools/gmx_helixorient.c:93:27: warning: unused variable 'vproj' [-Wunused-variable] rvec v1,v2,p1,p2,vtmp,vproj; ^~~~~ ../../../src/tools/gmx_helixorient.c:93:22: warning: unused variable 'vtmp' [-Wunused-variable] rvec v1,v2,p1,p2,vtmp,vproj; ^~~~ ../../../src/tools/gmx_helixorient.c:93:19: warning: unused variable 'p2' [-Wunused-variable] rvec v1,v2,p1,p2,vtmp,vproj; ^~ ../../../src/tools/gmx_helixorient.c:93:16: warning: unused variable 'p1' [-Wunused-variable] rvec v1,v2,p1,p2,vtmp,vproj; ^~ ../../../src/tools/gmx_helixorient.c:92:10: warning: unused variable 'averageaxis' [-Wunused-variable] rvec averageaxis; ^~~~~~~~~~~ ../../../src/tools/gmx_helixorient.c:86:9: warning: unused variable 'd' [-Wunused-variable] int d,i,j,teller=0; ^ ../../../src/tools/gmx_helixorient.c:80:18: warning: unused variable 'dx' [-Wunused-variable] rvec *x=NULL,dx; ^~ In file included from ../../../src/tools/gmx_helixorient.c:48: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_helixorient.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_helixorient.c:46: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_helixorient.c:45: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_nmtraj.lo ../../../src/tools/gmx_nmtraj.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_nmtraj.c -fPIC -DPIC -o .libs/gmx_nmtraj.o ../../../src/tools/gmx_nmtraj.c: In function 'gmx_nmtraj': ../../../src/tools/gmx_nmtraj.c:129:14: warning: variable 'dum' set but not used [-Wunused-but-set-variable] real dum; ^~~ ../../../src/tools/gmx_nmtraj.c:124:14: warning: unused variable 'found' [-Wunused-variable] bool found; ^~~~~ ../../../src/tools/gmx_nmtraj.c:123:25: warning: unused variable 'sum' [-Wunused-variable] real omega,Ekin,sum,m,vel; ^~~ ../../../src/tools/gmx_nmtraj.c:121:15: warning: unused variable 'out_eigval' [-Wunused-variable] real *out_eigval; ^~~~~~~~~~ ../../../src/tools/gmx_nmtraj.c:115:14: warning: unused variable 'neigval' [-Wunused-variable] int neigval; ^~~~~~~ ../../../src/tools/gmx_nmtraj.c:113:14: warning: unused variable 'grpname' [-Wunused-variable] char * grpname; ^~~~~~~ ../../../src/tools/gmx_nmtraj.c:111:14: warning: unused variable 'indexfile' [-Wunused-variable] char * indexfile; ^~~~~~~~~ ../../../src/tools/gmx_nmtraj.c:109:30: warning: unused variable 'v' [-Wunused-variable] int i,j,k,kmode,d,s,v; ^ ../../../src/tools/gmx_nmtraj.c:109:28: warning: unused variable 's' [-Wunused-variable] int i,j,k,kmode,d,s,v; ^ ../../../src/tools/gmx_nmtraj.c:105:15: warning: unused variable 'eigvalnr' [-Wunused-variable] int *eigvalnr; ^~~~~~~~ In file included from ../../../src/tools/gmx_nmtraj.c:54: At top level: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/tools/gmx_nmtraj.c:50: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_nmtraj.c:49: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_nmtraj.c:49: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_nmtraj.c:43: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_traj.lo ../../../src/tools/gmx_traj.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_traj.c -fPIC -DPIC -o .libs/gmx_traj.o ../../../src/tools/gmx_traj.c: In function 'write_pdb_bfac': ../../../src/tools/gmx_traj.c:337:11: warning: unused variable 'bOne' [-Wunused-variable] bool bOne; ^~~~ ../../../src/tools/gmx_traj.c: In function 'gmx_traj': ../../../src/tools/gmx_traj.c:525:18: warning: unused variable 'n' [-Wunused-variable] int i,j,n; ^ In file included from ../../../src/tools/gmx_traj.c:49: At top level: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_traj.c:47: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_traj.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_traj.c:42: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_trjorder.lo ../../../src/tools/gmx_trjorder.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_trjorder.c -fPIC -DPIC -o .libs/gmx_trjorder.o In file included from ../../../src/tools/gmx_trjorder.c:49: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_trjorder.c:47: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_trjorder.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_trjorder.c:42: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_trjcat.lo ../../../src/tools/gmx_trjcat.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_trjcat.c -fPIC -DPIC -o .libs/gmx_trjcat.o ../../../src/tools/gmx_trjcat.c: In function 'scan_trj_files': ../../../src/tools/gmx_trjcat.c:78:8: warning: unused variable 't' [-Wunused-variable] real t; ^ ../../../src/tools/gmx_trjcat.c: In function 'gmx_trjcat': ../../../src/tools/gmx_trjcat.c:392:58: warning: unused variable 'last_ok_step' [-Wunused-variable] int earliersteps,nfile_in,nfile_out,*cont_type,last_ok_step; ^~~~~~~~~~~~ ../../../src/tools/gmx_trjcat.c:388:34: warning: unused variable 'in_file' [-Wunused-variable] char **fnms,**fnms_out,*in_file,*out_file; ^~~~~~~ ../../../src/tools/gmx_trjcat.c:385:19: warning: unused variable 'v' [-Wunused-variable] rvec *x,*v; ^ ../../../src/tools/gmx_trjcat.c:385:16: warning: unused variable 'x' [-Wunused-variable] rvec *x,*v; ^ ../../../src/tools/gmx_trjcat.c:384:53: warning: unused variable 'trjout' [-Wunused-variable] int status,ftpin,i,frame,frame_out,step=0,trjout=0; ^~~~~~ ../../../src/tools/gmx_trjcat.c:384:22: warning: unused variable 'ftpin' [-Wunused-variable] int status,ftpin,i,frame,frame_out,step=0,trjout=0; ^~~~~ In file included from ../../../src/tools/gmx_trjcat.c:56: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_trjcat.c:56: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/tools/gmx_trjcat.c:52: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_trjcat.c:50: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_trjcat.c:46: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_sham.lo ../../../src/tools/gmx_sham.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_sham.c -fPIC -DPIC -o .libs/gmx_sham.o ../../../src/tools/gmx_sham.c: In function 'do_sham': ../../../src/tools/gmx_sham.c:286:32: warning: unused variable 'd' [-Wunused-variable] int i,j,k,imin,len,index,d,*nbin,*bindex,bi; ^ ../../../src/tools/gmx_sham.c: In function 'gmx_sham': ../../../src/tools/gmx_sham.c:778:41: warning: unused variable 'db' [-Wunused-variable] double *av,*sig,cum1,cum2,cum3,cum4,db; ^~ ../../../src/tools/gmx_sham.c:778:36: warning: unused variable 'cum4' [-Wunused-variable] double *av,*sig,cum1,cum2,cum3,cum4,db; ^~~~ ../../../src/tools/gmx_sham.c:778:31: warning: unused variable 'cum3' [-Wunused-variable] double *av,*sig,cum1,cum2,cum3,cum4,db; ^~~~ ../../../src/tools/gmx_sham.c:778:26: warning: unused variable 'cum2' [-Wunused-variable] double *av,*sig,cum1,cum2,cum3,cum4,db; ^~~~ ../../../src/tools/gmx_sham.c:778:21: warning: unused variable 'cum1' [-Wunused-variable] double *av,*sig,cum1,cum2,cum3,cum4,db; ^~~~ ../../../src/tools/gmx_sham.c:778:17: warning: unused variable 'sig' [-Wunused-variable] double *av,*sig,cum1,cum2,cum3,cum4,db; ^~~ ../../../src/tools/gmx_sham.c:778:13: warning: unused variable 'av' [-Wunused-variable] double *av,*sig,cum1,cum2,cum3,cum4,db; ^~ ../../../src/tools/gmx_sham.c:776:66: warning: unused variable 'error' [-Wunused-variable] real **val,**et_val,**dt_val,*t,*e_t,e_dt,d_dt,*d_t,dt,tot,error; ^~~~~ ../../../src/tools/gmx_sham.c:776:62: warning: unused variable 'tot' [-Wunused-variable] real **val,**et_val,**dt_val,*t,*e_t,e_dt,d_dt,*d_t,dt,tot,error; ^~~ ../../../src/tools/gmx_sham.c:775:51: warning: unused variable 'j' [-Wunused-variable] int n,e_n,d_n,nlast,s,nset,e_nset,d_nset,i,j=0,*idim,*ibox; ^ ../../../src/tools/gmx_sham.c:775:28: warning: unused variable 's' [-Wunused-variable] int n,e_n,d_n,nlast,s,nset,e_nset,d_nset,i,j=0,*idim,*ibox; ^ ../../../src/tools/gmx_sham.c:775:22: warning: unused variable 'nlast' [-Wunused-variable] int n,e_n,d_n,nlast,s,nset,e_nset,d_nset,i,j=0,*idim,*ibox; ^~~~~ ../../../src/tools/gmx_sham.c:774:13: warning: unused variable 'out' [-Wunused-variable] FILE *out; ^~~ ../../../src/tools/gmx_sham.c:728:35: warning: unused variable 'resol' [-Wunused-variable] static int nsets_in=1,nb_min=4,resol=10,nlevels=25; ^~~~~ ../../../src/tools/gmx_sham.c:728:26: warning: unused variable 'nb_min' [-Wunused-variable] static int nsets_in=1,nb_min=4,resol=10,nlevels=25; ^~~~~~ ../../../src/tools/gmx_sham.c:723:15: warning: unused variable 'bShamEner' [-Wunused-variable] static bool bShamEner=TRUE,bSham=TRUE; ^~~~~~~~~ ../../../src/tools/gmx_sham.c:722:56: warning: unused variable 'bPower' [-Wunused-variable] static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE; ^~~~~~ ../../../src/tools/gmx_sham.c:722:41: warning: unused variable 'bEeFitAc' [-Wunused-variable] static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE; ^~~~~~~~ ../../../src/tools/gmx_sham.c:722:28: warning: unused variable 'bEENLC' [-Wunused-variable] static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE; ^~~~~~ ../../../src/tools/gmx_sham.c:722:15: warning: unused variable 'bEESEF' [-Wunused-variable] static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE; ^~~~~~ ../../../src/tools/gmx_sham.c:721:66: warning: unused variable 'bXYdy' [-Wunused-variable] static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE; ^~~~~ ../../../src/tools/gmx_sham.c:721:50: warning: unused variable 'bAverCorr' [-Wunused-variable] static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE; ^~~~~~~~~ ../../../src/tools/gmx_sham.c:721:38: warning: unused variable 'bSubAv' [-Wunused-variable] static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE; ^~~~~~ ../../../src/tools/gmx_sham.c:720:36: warning: unused variable 'filtlen' [-Wunused-variable] static real tb=-1,te=-1,frac=0.5,filtlen=0,binwidth=0.1; ^~~~~~~ ../../../src/tools/gmx_sham.c:720:27: warning: unused variable 'frac' [-Wunused-variable] static real tb=-1,te=-1,frac=0.5,filtlen=0,binwidth=0.1; ^~~~ At top level: ../../../src/tools/gmx_sham.c:720:27: warning: 'frac' defined but not used [-Wunused-variable] ../../../src/tools/gmx_sham.c:720:36: warning: 'filtlen' defined but not used [-Wunused-variable] static real tb=-1,te=-1,frac=0.5,filtlen=0,binwidth=0.1; ^~~~~~~ ../../../src/tools/gmx_sham.c:721:38: warning: 'bSubAv' defined but not used [-Wunused-variable] static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE; ^~~~~~ ../../../src/tools/gmx_sham.c:721:50: warning: 'bAverCorr' defined but not used [-Wunused-variable] static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE; ^~~~~~~~~ ../../../src/tools/gmx_sham.c:721:66: warning: 'bXYdy' defined but not used [-Wunused-variable] static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE; ^~~~~ ../../../src/tools/gmx_sham.c:722:15: warning: 'bEESEF' defined but not used [-Wunused-variable] static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE; ^~~~~~ ../../../src/tools/gmx_sham.c:722:28: warning: 'bEENLC' defined but not used [-Wunused-variable] static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE; ^~~~~~ ../../../src/tools/gmx_sham.c:722:41: warning: 'bEeFitAc' defined but not used [-Wunused-variable] static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE; ^~~~~~~~ ../../../src/tools/gmx_sham.c:722:56: warning: 'bPower' defined but not used [-Wunused-variable] static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE; ^~~~~~ ../../../src/tools/gmx_sham.c:723:15: warning: 'bShamEner' defined but not used [-Wunused-variable] static bool bShamEner=TRUE,bSham=TRUE; ^~~~~~~~~ ../../../src/tools/gmx_sham.c:728:26: warning: 'nb_min' defined but not used [-Wunused-variable] static int nsets_in=1,nb_min=4,resol=10,nlevels=25; ^~~~~~ ../../../src/tools/gmx_sham.c:728:35: warning: 'resol' defined but not used [-Wunused-variable] static int nsets_in=1,nb_min=4,resol=10,nlevels=25; ^~~~~ In file included from ../../../src/tools/gmx_sham.c:56: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/tools/gmx_sham.c:48: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_sham.c:47: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_sham.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_sham.c:41: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_genbox.lo ../../../src/tools/gmx_genbox.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_genbox.c -fPIC -DPIC -o .libs/gmx_genbox.o ../../../src/tools/gmx_genbox.c: In function 'gmx_genbox': ../../../src/tools/gmx_genbox.c:665:11: warning: unused variable 'pbc' [-Wunused-variable] t_pbc pbc; ^~~ In file included from ../../../src/tools/gmx_genbox.c:61: At top level: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_genbox.c:57: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_genbox.c:55: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_genbox.c:55: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/tools/gmx_genbox.c:47: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ ../../../src/tools/gmx_genbox.c: In function 'update_top.constprop': ../../../src/tools/gmx_genbox.c:538:19: warning: ' in water ' directive writing 10 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(buf,"%s in water\n",buf2); ^~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../src/tools/gmx_genbox.c:41: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 11 and 4106 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_genion.lo ../../../src/tools/gmx_genion.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_genion.c -fPIC -DPIC -o .libs/gmx_genion.o ../../../src/tools/gmx_genion.c: In function 'insert_ion': ../../../src/tools/gmx_genion.c:72:8: warning: unused variable 'xei' [-Wunused-variable] rvec xei,dx; ^~~ ../../../src/tools/gmx_genion.c:70:29: warning: unused variable 'm' [-Wunused-variable] int i,ii,ei,owater,wlast,m,nw; ^ ../../../src/tools/gmx_genion.c:70:23: warning: unused variable 'wlast' [-Wunused-variable] int i,ii,ei,owater,wlast,m,nw; ^~~~~ ../../../src/tools/gmx_genion.c:70:16: warning: unused variable 'owater' [-Wunused-variable] int i,ii,ei,owater,wlast,m,nw; ^~~~~~ In file included from ../../../src/tools/gmx_genion.c:54: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../src/tools/gmx_genion.c:51: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/tools/gmx_genion.c:48: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_genion.c:46: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_genion.c:41: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_wham.lo ../../../src/tools/gmx_wham.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_wham.c -fPIC -DPIC -o .libs/gmx_wham.o In file included from ../../../src/tools/gmx_wham.c:48: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_wham.c:47: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_wham.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_wham.c:44: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ ../../../src/tools/gmx_wham.c: In function 'open_pdo_pipe': ../../../src/tools/gmx_wham.c:1201:27: warning: ' -c < ' directive writing 6 bytes into a region of size between 1 and 1024 [-Wformat-overflow=] sprintf(Buffer,"%s -c < %s",gunzip,fn); ^~~~~~ In file included from /usr/include/stdio.h:862, from ../../../src/tools/gmx_wham.c:37: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 7 or more bytes (assuming 1030) into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_genconf.lo ../../../src/tools/gmx_genconf.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_genconf.c -fPIC -DPIC -o .libs/gmx_genconf.o ../../../src/tools/gmx_genconf.c:93:13: warning: 'move_x' defined but not used [-Wunused-function] static void move_x(int natoms,rvec x[],matrix box) ^~~~~~ In file included from ../../../src/tools/gmx_genconf.c:48: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_genconf.c:47: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_genconf.c:42: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_genconf.c:40: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_editconf.lo ../../../src/tools/gmx_editconf.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_editconf.c -fPIC -DPIC -o .libs/gmx_editconf.o ../../../src/tools/gmx_editconf.c: In function 'calc_geom': ../../../src/tools/gmx_editconf.c:103:12: warning: unused variable 'grpnames' [-Wunused-variable] char *grpnames; ^~~~~~~~ ../../../src/tools/gmx_editconf.c: In function 'set_pdb_conf_bfac': ../../../src/tools/gmx_editconf.c:195:9: warning: unused variable 'out' [-Wunused-variable] FILE *out; ^~~ ../../../src/tools/gmx_editconf.c: In function 'gmx_editconf': ../../../src/tools/gmx_editconf.c:518:35: warning: unused variable 'zcent' [-Wunused-variable] real xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw; ^~~~~ ../../../src/tools/gmx_editconf.c:518:29: warning: unused variable 'ycent' [-Wunused-variable] real xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw; ^~~~~ ../../../src/tools/gmx_editconf.c:518:23: warning: unused variable 'xcent' [-Wunused-variable] real xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw; ^~~~~ ../../../src/tools/gmx_editconf.c:518:20: warning: unused variable 'zs' [-Wunused-variable] real xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw; ^~ ../../../src/tools/gmx_editconf.c:518:17: warning: unused variable 'ys' [-Wunused-variable] real xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw; ^~ ../../../src/tools/gmx_editconf.c:518:14: warning: unused variable 'xs' [-Wunused-variable] real xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw; ^~ ../../../src/tools/gmx_editconf.c:516:38: warning: unused variable 'bCubic' [-Wunused-variable] bool bIndex,bSetSize,bSetAng,bCubic,bDist,bSetCenter; ^~~~~~ ../../../src/tools/gmx_editconf.c:512:30: warning: unused variable 'tindex' [-Wunused-variable] atom_id *index,*sindex,*tindex; ^~~~~~ ../../../src/tools/gmx_editconf.c:511:26: warning: unused variable 'tsize' [-Wunused-variable] int isize,ssize,tsize; ^~~~~ ../../../src/tools/gmx_editconf.c:456:33: warning: unused variable 'to_diam' [-Wunused-variable] static real dist=0.0,rbox=0.0,to_diam=0.0; ^~~~~~~ ../../../src/tools/gmx_editconf.c:456:24: warning: unused variable 'rbox' [-Wunused-variable] static real dist=0.0,rbox=0.0,to_diam=0.0; ^~~~ At top level: ../../../src/tools/gmx_editconf.c:456:24: warning: 'rbox' defined but not used [-Wunused-variable] ../../../src/tools/gmx_editconf.c:456:33: warning: 'to_diam' defined but not used [-Wunused-variable] static real dist=0.0,rbox=0.0,to_diam=0.0; ^~~~~~~ ../../../src/tools/gmx_editconf.c:79:14: warning: 'pdbtp' defined but not used [-Wunused-variable] static char *pdbtp[epdbNR]={"ATOM ","HETATM"}; ^~~~~ In file included from ../../../src/tools/gmx_editconf.c:53: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_editconf.c:53: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_editconf.c:49: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_editconf.c:48: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_editconf.c:43: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_genpr.lo ../../../src/tools/gmx_genpr.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_genpr.c -fPIC -DPIC -o .libs/gmx_genpr.o In file included from ../../../src/tools/gmx_genpr.c:50: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_genpr.c:50: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/tools/gmx_genpr.c:44: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_genpr.c:42: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_xpm2ps.lo ../../../src/tools/gmx_xpm2ps.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_xpm2ps.c -fPIC -DPIC -o .libs/gmx_xpm2ps.o ../../../src/tools/gmx_xpm2ps.c: In function 'xpm_mat': ../../../src/tools/gmx_xpm2ps.c:559:14: warning: unused variable 'k' [-Wunused-variable] int i,j,k,x,y,col; ^ ../../../src/tools/gmx_xpm2ps.c:559:12: warning: unused variable 'j' [-Wunused-variable] int i,j,k,x,y,col; ^ ../../../src/tools/gmx_xpm2ps.c:558:10: warning: unused variable 'buf' [-Wunused-variable] char buf[100]; ^~~ ../../../src/tools/gmx_xpm2ps.c: In function 'tick_spacing': ../../../src/tools/gmx_xpm2ps.c:599:18: warning: unused variable 'bFive' [-Wunused-variable] bool bTryAgain,bFive; ^~~~~ ../../../src/tools/gmx_xpm2ps.c: In function 'ps_mat': ../../../src/tools/gmx_xpm2ps.c:644:12: warning: unused variable 'j' [-Wunused-variable] int i,j,x,y,col,leg=0; ^ ../../../src/tools/gmx_xpm2ps.c: In function 'write_combined_matrix': ../../../src/tools/gmx_xpm2ps.c:919:14: warning: unused variable 'map' [-Wunused-variable] t_mapping *map=NULL; ^~~ ../../../src/tools/gmx_xpm2ps.c: In function 'gmx_xpm2ps': ../../../src/tools/gmx_xpm2ps.c:1127:56: warning: unused variable 'bAdd' [-Wunused-variable] static bool bFrame=TRUE,bZeroLine=FALSE,bYonce=FALSE,bAdd=FALSE; ^~~~ At top level: ../../../src/tools/gmx_xpm2ps.c:1127:56: warning: 'bAdd' defined but not used [-Wunused-variable] In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_xpm2ps.c:45: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_xpm2ps.c:42: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ ../../../src/tools/gmx_xpm2ps.c: In function 'ps_mat': ../../../src/tools/gmx_xpm2ps.c:346:22: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(buf,"%g",mat[i].axis_x[j]); ^ In file included from /usr/include/stdio.h:862, from ../../../include/string2.h:56, from ../../../src/tools/gmx_xpm2ps.c:41: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 2 and 14 bytes into a destination of size 12 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../src/tools/gmx_xpm2ps.c:374:22: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(buf,"%g",mat[i].axis_y[j]); ^ In file included from /usr/include/stdio.h:862, from ../../../include/string2.h:56, from ../../../src/tools/gmx_xpm2ps.c:41: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 2 and 14 bytes into a destination of size 12 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o editconf.o ../../../src/tools/editconf.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o eneconv.o ../../../src/tools/eneconv.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o genbox.o ../../../src/tools/genbox.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o genconf.o ../../../src/tools/genconf.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_wheel.lo ../../../src/tools/gmx_wheel.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_wheel.c -fPIC -DPIC -o .libs/gmx_wheel.o In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_wheel.c:55: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_wheel.c:52: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_wheel.c:49: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_wheel.c:49: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_nmtraj.o ../../../src/tools/g_nmtraj.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o genrestr.o ../../../src/tools/genrestr.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_trjconv.lo ../../../src/tools/gmx_trjconv.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_trjconv.c -fPIC -DPIC -o .libs/gmx_trjconv.o ../../../src/tools/gmx_trjconv.c: In function 'calc_pbc_cluster': ../../../src/tools/gmx_trjconv.c:89:34: warning: unused variable 'is' [-Wunused-variable] int m,i,j,j0,j1,jj,ai,iter,is; ^~ ../../../src/tools/gmx_trjconv.c: In function 'put_molecule_com_in_box': ../../../src/tools/gmx_trjconv.c:252:29: warning: unused variable 'dx' [-Wunused-variable] rvec com,new_com,shift,dx,box_center; ^~ ../../../src/tools/gmx_trjconv.c: In function 'put_residue_com_in_box': ../../../src/tools/gmx_trjconv.c:303:37: warning: variable 'res_nat' set but not used [-Wunused-but-set-variable] atom_id i, j, res_start, res_end, res_nat; ^~~~~~~ ../../../src/tools/gmx_trjconv.c: In function 'gmx_trjconv': ../../../src/tools/gmx_trjconv.c:726:16: warning: unused variable 'xdr' [-Wunused-variable] int xdr=0; ^~~ ../../../src/tools/gmx_trjconv.c:725:42: warning: unused variable 'command' [-Wunused-variable] char top_title[256],title[256],command[256],filemode[5]; ^~~~~~~ ../../../src/tools/gmx_trjconv.c:715:21: warning: variable 'bFitXY' set but not used [-Wunused-but-set-variable] bool bFit,bFitXY,bPFit,bReset; ^~~~~~ ../../../src/tools/gmx_trjconv.c:707:25: warning: unused variable 'gn_rms' [-Wunused-variable] char *gn_fit,*gn_rms; ^~~~~~ ../../../src/tools/gmx_trjconv.c:706:26: warning: unused variable 'ind_rms' [-Wunused-variable] atom_id *ind_fit,*ind_rms; ^~~~~~~ ../../../src/tools/gmx_trjconv.c:705:21: warning: unused variable 'irms' [-Wunused-variable] int ifit,irms,my_clust=-1; ^~~~ ../../../src/tools/gmx_trjconv.c:695:55: warning: unused variable 'nre' [-Wunused-variable] int m,i,d,frame,outframe,natoms,nout,ncent,nre,newstep=0,model_nr; ^~~ ../../../src/tools/gmx_trjconv.c:694:23: warning: unused variable 'lambda' [-Wunused-variable] real xtcpr, lambda,*w_rls=NULL; ^~~~~~ ../../../src/tools/gmx_trjconv.c:694:16: warning: unused variable 'xtcpr' [-Wunused-variable] real xtcpr, lambda,*w_rls=NULL; ^~~~~ ../../../src/tools/gmx_trjconv.c:693:49: warning: unused variable 'dx' [-Wunused-variable] rvec *xp=NULL,x_shift,hbox,box_center,dx; ^~ ../../../src/tools/gmx_trjconv.c:693:38: warning: unused variable 'box_center' [-Wunused-variable] rvec *xp=NULL,x_shift,hbox,box_center,dx; ^~~~~~~~~~ In file included from ../../../src/tools/gmx_trjconv.c:57: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_trjconv.c:57: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/tools/gmx_trjconv.c:53: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_trjconv.c:51: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_trjconv.c:47: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ ../../../src/tools/gmx_trjconv.c: In function 'gmx_trjconv': ../../../src/tools/gmx_trjconv.c:1325:46: warning: '%s' directive writing up to 255 bytes into a region of size 233 [-Wformat-overflow=] sprintf(title,"Generated by trjconv : %s t= %9.5f", ^~ top_title,fr.time); ~~~~~~~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../include/typedefs.h:52, from ../../../include/macros.h:49, from ../../../src/tools/gmx_trjconv.c:42: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 37 and 599 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../src/tools/gmx_trjconv.c:1336:20: warning: ' t= ' directive writing 4 bytes into a region of size between 1 and 256 [-Wformat-overflow=] sprintf(title,"%s t= %9.5f",top_title,frout.time); ^~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../include/typedefs.h:52, from ../../../include/macros.h:49, from ../../../src/tools/gmx_trjconv.c:42: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 14 and 576 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o edittop.lo ../../../src/tools/edittop.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/edittop.c -fPIC -DPIC -o .libs/edittop.o ../../../src/tools/edittop.c: In function 'delete_from_block': ../../../src/tools/edittop.c:104:17: warning: unused variable 'k' [-Wunused-variable] int i,i1,j1,j,k; ^ ../../../src/tools/edittop.c:104:12: warning: unused variable 'j1' [-Wunused-variable] int i,i1,j1,j,k; ^~ ../../../src/tools/edittop.c: In function 'delete_atom': ../../../src/tools/edittop.c:161:7: warning: unused variable 'k' [-Wunused-variable] int k; ^ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o trjcat.o ../../../src/tools/trjcat.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o trjconv.o ../../../src/tools/trjconv.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o calcpot.lo ../../../src/tools/calcpot.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/calcpot.c -fPIC -DPIC -o .libs/calcpot.o ../../../src/tools/calcpot.c: In function 'c_tabpot': ../../../src/tools/calcpot.c:79:8: warning: unused variable 'qqO' [-Wunused-variable] real qqO,qj; ^~~ ../../../src/tools/calcpot.c:78:43: warning: unused variable 'rinv2O' [-Wunused-variable] real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O; ^~~~~~ ../../../src/tools/calcpot.c:78:24: warning: unused variable 'fsO' [-Wunused-variable] real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O; ^~~ ../../../src/tools/calcpot.c:78:20: warning: unused variable 'vcO' [-Wunused-variable] real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O; ^~~ ../../../src/tools/calcpot.c:78:16: warning: unused variable 'tzO' [-Wunused-variable] real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O; ^~~ ../../../src/tools/calcpot.c:78:12: warning: unused variable 'tyO' [-Wunused-variable] real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O; ^~~ ../../../src/tools/calcpot.c:78:8: warning: unused variable 'txO' [-Wunused-variable] real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O; ^~~ ../../../src/tools/calcpot.c:76:28: warning: unused variable 'fzO' [-Wunused-variable] real fxJ,fyJ,fzJ,fxO,fyO,fzO; ^~~ ../../../src/tools/calcpot.c:76:24: warning: unused variable 'fyO' [-Wunused-variable] real fxJ,fyJ,fzJ,fxO,fyO,fzO; ^~~ ../../../src/tools/calcpot.c:76:20: warning: unused variable 'fxO' [-Wunused-variable] real fxJ,fyJ,fzJ,fxO,fyO,fzO; ^~~ ../../../src/tools/calcpot.c:76:16: warning: unused variable 'fzJ' [-Wunused-variable] real fxJ,fyJ,fzJ,fxO,fyO,fzO; ^~~ ../../../src/tools/calcpot.c:76:12: warning: unused variable 'fyJ' [-Wunused-variable] real fxJ,fyJ,fzJ,fxO,fyO,fzO; ^~~ ../../../src/tools/calcpot.c:76:8: warning: unused variable 'fxJ' [-Wunused-variable] real fxJ,fyJ,fzJ,fxO,fyO,fzO; ^~~ ../../../src/tools/calcpot.c:75:38: warning: unused variable 'ggid' [-Wunused-variable] int ii,k,n,jnr,ii3,nj0,nj1,is3,j3,ggid; ^~~~ ../../../src/tools/calcpot.c:71:50: warning: unused variable 'FF' [-Wunused-variable] real r1,r1t,fijC,eps,eps2,Y,F,Fp,Geps,Heps2,VV,FF; ^~ ../../../src/tools/calcpot.c:71:15: warning: unused variable 'fijC' [-Wunused-variable] real r1,r1t,fijC,eps,eps2,Y,F,Fp,Geps,Heps2,VV,FF; ^~~~ ../../../src/tools/calcpot.c:70:14: warning: unused variable 'two' [-Wunused-variable] const real two = 2.000000; ^~~ ../../../src/tools/calcpot.c: In function 'calc_pot': ../../../src/tools/calcpot.c:176:15: warning: variable 'box_size' set but not used [-Wunused-but-set-variable] rvec box_size; ^~~~~~~~ ../../../src/tools/calcpot.c: In function 'init_calcpot': ../../../src/tools/calcpot.c:238:12: warning: variable 'box_size' set but not used [-Wunused-but-set-variable] rvec box_size; ^~~~~~~~ In file included from ../../../src/tools/calcpot.c:46: At top level: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../src/tools/calcpot.c:40: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/calcpot.c:40: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o trjorder.o ../../../src/tools/trjorder.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o wheel.o ../../../src/tools/wheel.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xpm2ps.o ../../../src/tools/xpm2ps.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o genion.o ../../../src/tools/genion.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_analyze.o ../../../src/tools/g_analyze.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_anaeig.o ../../../src/tools/g_anaeig.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_eneconv.lo ../../../src/tools/gmx_eneconv.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_eneconv.c -fPIC -DPIC -o .libs/gmx_eneconv.o ../../../src/tools/gmx_eneconv.c: In function 'gmx_eneconv': ../../../src/tools/gmx_eneconv.c:427:14: warning: unused variable 'ok' [-Wunused-variable] bool ok; ^~ ../../../src/tools/gmx_eneconv.c:426:35: warning: unused variable 'chptr' [-Wunused-variable] char inputstring[STRLEN],*chptr; ^~~~~ ../../../src/tools/gmx_eneconv.c:426:14: warning: unused variable 'inputstring' [-Wunused-variable] char inputstring[STRLEN],*chptr; ^~~~~~~~~~~ ../../../src/tools/gmx_eneconv.c:425:42: warning: unused variable 't1' [-Wunused-variable] real *readtime,*settime,timestep,t1,tadjust; ^~ ../../../src/tools/gmx_eneconv.c:421:42: warning: unused variable 'j' [-Wunused-variable] int nre,nremax,this_nre,nfile,i,j,kkk,nset,*set=NULL; ^ At top level: ../../../src/tools/gmx_eneconv.c:101:13: warning: 'same_time' defined but not used [-Wunused-function] static bool same_time(real t1,real t2) ^~~~~~~~~ In file included from ../../../src/tools/gmx_eneconv.c:48: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_eneconv.c:45: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_angle.o ../../../src/tools/g_angle.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_bond.o ../../../src/tools/g_bond.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_vanhove.lo ../../../src/tools/gmx_vanhove.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_vanhove.c -fPIC -DPIC -o .libs/gmx_vanhove.o In file included from ../../../src/tools/gmx_vanhove.c:56: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../src/tools/gmx_vanhove.c:51: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_vanhove.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_vanhove.c:47: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_bundle.o ../../../src/tools/g_bundle.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o mk_angndx.o ../../../src/tools/mk_angndx.c In file included from ../../../include/statutil.h:51, from ../../../src/tools/mk_angndx.c:43: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/mk_angndx.c:42: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_chi.o ../../../src/tools/g_chi.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_cluster.o ../../../src/tools/g_cluster.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_confrms.o ../../../src/tools/g_confrms.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_covar.o ../../../src/tools/g_covar.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_density.o ../../../src/tools/g_density.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_current.o ../../../src/tools/g_current.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_densmap.o ../../../src/tools/g_densmap.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_dih.o ../../../src/tools/g_dih.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_dielectric.o ../../../src/tools/g_dielectric.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_principal.o ../../../src/tools/g_principal.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_helixorient.o ../../../src/tools/g_helixorient.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o addconf.lo ../../../src/tools/addconf.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/addconf.c -fPIC -DPIC -o .libs/addconf.o ../../../src/tools/addconf.c: In function 'do_nsgrid': ../../../src/tools/addconf.c:205:14: warning: variable 'box_size' set but not used [-Wunused-but-set-variable] rvec box_size; ^~~~~~~~ ../../../src/tools/addconf.c: In function 'add_conf': ../../../src/tools/addconf.c:328:23: warning: unused variable 'xpp' [-Wunused-variable] rvec dx,xi,xj,xpp,*x_all,*v_all; ^~~ ../../../src/tools/addconf.c:326:34: warning: unused variable 'dz1' [-Wunused-variable] int dx0,dx1,dy0,dy1,dz0,dz1; ^~~ ../../../src/tools/addconf.c:326:30: warning: unused variable 'dz0' [-Wunused-variable] int dx0,dx1,dy0,dy1,dz0,dz1; ^~~ ../../../src/tools/addconf.c:326:26: warning: unused variable 'dy1' [-Wunused-variable] int dx0,dx1,dy0,dy1,dz0,dz1; ^~~ ../../../src/tools/addconf.c:326:22: warning: unused variable 'dy0' [-Wunused-variable] int dx0,dx1,dy0,dy1,dz0,dz1; ^~~ ../../../src/tools/addconf.c:326:18: warning: unused variable 'dx1' [-Wunused-variable] int dx0,dx1,dy0,dy1,dz0,dz1; ^~~ ../../../src/tools/addconf.c:326:14: warning: unused variable 'dx0' [-Wunused-variable] int dx0,dx1,dy0,dy1,dz0,dz1; ^~~ ../../../src/tools/addconf.c:325:44: warning: unused variable 'maxincell' [-Wunused-variable] int prev,resnr,nresadd,d,k,ncells,maxincell; ^~~~~~~~~ ../../../src/tools/addconf.c:325:37: warning: unused variable 'ncells' [-Wunused-variable] int prev,resnr,nresadd,d,k,ncells,maxincell; ^~~~~~ ../../../src/tools/addconf.c:325:35: warning: unused variable 'k' [-Wunused-variable] int prev,resnr,nresadd,d,k,ncells,maxincell; ^ ../../../src/tools/addconf.c:325:33: warning: unused variable 'd' [-Wunused-variable] int prev,resnr,nresadd,d,k,ncells,maxincell; ^ ../../../src/tools/addconf.c:325:19: warning: unused variable 'resnr' [-Wunused-variable] int prev,resnr,nresadd,d,k,ncells,maxincell; ^~~~~ ../../../src/tools/addconf.c:324:47: warning: unused variable 'iprot' [-Wunused-variable] int i,j,jj,m,j0,j1,jjj,jnres,jnr,inr,iprot,is1,is2; ^~~~~ ../../../src/tools/addconf.c:324:21: warning: unused variable 'm' [-Wunused-variable] int i,j,jj,m,j0,j1,jjj,jnres,jnr,inr,iprot,is1,is2; ^ ../../../src/tools/addconf.c:324:18: warning: unused variable 'jj' [-Wunused-variable] int i,j,jj,m,j0,j1,jjj,jnres,jnr,inr,iprot,is1,is2; ^~ ../../../src/tools/addconf.c:322:47: warning: unused variable 'ib2' [-Wunused-variable] real max_vdw,*r_prot,*r_all,n2,r2,ib1,ib2; ^~~ ../../../src/tools/addconf.c:322:43: warning: unused variable 'ib1' [-Wunused-variable] real max_vdw,*r_prot,*r_all,n2,r2,ib1,ib2; ^~~ At top level: ../../../src/tools/addconf.c:70:13: warning: 'set_margin' defined but not used [-Wunused-function] static void set_margin(t_atoms *atoms, rvec *x, real *r) ^~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/tools/addconf.c:47: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/addconf.c:46: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../src/tools/addconf.c:42: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/addconf.c:42: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_dipoles.o ../../../src/tools/g_dipoles.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_disre.o ../../../src/tools/g_disre.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_dist.o ../../../src/tools/g_dist.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_enemat.o ../../../src/tools/g_enemat.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_dyndom.o ../../../src/tools/g_dyndom.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_energy.o ../../../src/tools/g_energy.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_lie.o ../../../src/tools/g_lie.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_filter.o ../../../src/tools/g_filter.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_gyrate.o ../../../src/tools/g_gyrate.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o anadock.o ../../../src/tools/anadock.c ../../../src/tools/anadock.c: In function 'rmsd_dist': ../../../src/tools/anadock.c:197:13: warning: variable 'dist' set but not used [-Wunused-but-set-variable] real rmsd,dist; ^~~~ In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/tools/anadock.c:47: At top level: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/anadock.c:46: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/anadock.c:46: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/tools/anadock.c:41: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ ../../../src/tools/anadock.c: In function 'main': ../../../src/tools/anadock.c:110:22: warning: '%d' directive writing between 1 and 10 bytes into a region of size between 0 and 255 [-Wformat-overflow=] sprintf(name,"%s_%d.pdb",buf,i+1); ^~ ../../../src/tools/anadock.c:110:18: note: directive argument in the range [1, 2147483647] sprintf(name,"%s_%d.pdb",buf,i+1); ^~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../include/typedefs.h:52, from ../../../include/confio.h:44, from ../../../src/tools/anadock.c:40: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 7 and 271 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_h2order.o ../../../src/tools/g_h2order.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_hbond.o ../../../src/tools/g_hbond.c make[3]: Leaving directory 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x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_potential.o ../../../src/tools/g_potential.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_rama.o ../../../src/tools/g_rama.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ 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'/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_rmsf.o ../../../src/tools/g_rmsf.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_rmsdist.o ../../../src/tools/g_rmsdist.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 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Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_sgangle.o ../../../src/tools/g_sgangle.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_sham.o ../../../src/tools/g_sham.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include 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-I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_tcaf.o ../../../src/tools/g_tcaf.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_vanhove.o ../../../src/tools/g_vanhove.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_velacc.o ../../../src/tools/g_velacc.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_clustsize.o ../../../src/tools/g_clustsize.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_mdmat.o ../../../src/tools/g_mdmat.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_kinetics.o ../../../src/tools/g_kinetics.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_wham.o ../../../src/tools/g_wham.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o make_edi.o ../../../src/tools/make_edi.c ../../../src/tools/make_edi.c: In function 'sscan_list': ../../../src/tools/make_edi.c:185:14: warning: this 'else' clause does not guard... [-Wmisleading-indentation] else status=sError; break; ^~~~ ../../../src/tools/make_edi.c:185:34: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' else status=sError; break; ^~~~~ ../../../src/tools/make_edi.c: In function 'main': ../../../src/tools/make_edi.c:640:10: warning: variable 'bTop' set but not used [-Wunused-but-set-variable] bool bTop, bFit1; ^~~~ In file included from ../../../src/tools/make_edi.c:56: At top level: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/tools/make_edi.c:52: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/make_edi.c:50: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/make_edi.c:50: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/tools/make_edi.c:43: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sigeps.o ../../../src/tools/sigeps.c ../../../src/tools/sigeps.c: In function 'main': ../../../src/tools/sigeps.c:106:42: warning: unused variable 'pp' [-Wunused-variable] real qq,x,oldx,minimum,mval,dp[2],pp[2]; ^~ In file included from ../../../src/tools/sigeps.c:50: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/sigeps.c:50: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/tools/sigeps.c:47: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/tools/sigeps.c:44: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/sigeps.c:43: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o make_ndx.o ../../../src/tools/make_ndx.c In file included from ../../../src/tools/make_ndx.c:52: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/make_ndx.c:52: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/tools/make_ndx.c:48: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/make_ndx.c:46: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ ../../../src/tools/make_ndx.c: In function 'main': ../../../src/tools/make_ndx.c:994:20: warning: '_&_' directive writing 3 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(gname,"%s_&_%s",gname1,gname2); ^~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../src/tools/make_ndx.c:41: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 4 and 8194 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../src/tools/make_ndx.c:990:21: warning: '%s' directive writing up to 4095 bytes into a region of size between 0 and 4095 [-Wformat-overflow=] sprintf(gname,"%s_%s",gname1,gname2); ^~ ~~~~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../src/tools/make_ndx.c:41: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 2 and 8192 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -version-info 5:0:0 -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o libgmxana.la -rpath /usr/lib64 autocorr.lo expfit.lo polynomials.lo levenmar.lo anadih.lo pp2shift.lo dlist.lo eigio.lo lsq.lo cmat.lo eigensolver.lo nsc.lo hxprops.lo fitahx.lo gmx_analyze.lo gmx_anaeig.lo gmx_angle.lo gmx_bond.lo gmx_bundle.lo gmx_chi.lo gmx_cluster.lo gmx_confrms.lo gmx_covar.lo gmx_current.lo gmx_density.lo gmx_densmap.lo gmx_dih.lo gmx_dielectric.lo gmx_kinetics.lo gmx_spatial.lo gmx_dipoles.lo gmx_disre.lo gmx_dist.lo gmx_dyndom.lo gmx_enemat.lo gmx_energy.lo gmx_lie.lo gmx_filter.lo gmx_gyrate.lo gmx_h2order.lo gmx_hbond.lo gmx_helix.lo gmx_mindist.lo gmx_msd.lo gmx_morph.lo gmx_nmeig.lo gmx_nmens.lo gmx_order.lo gmx_principal.lo gmx_polystat.lo gmx_potential.lo gmx_rama.lo gmx_rdf.lo gmx_rms.lo gmx_rmsdist.lo gmx_rmsf.lo gmx_rotacf.lo gmx_saltbr.lo gmx_sas.lo gmx_sdf.lo gmx_sgangle.lo gmx_sorient.lo gmx_spol.lo gmx_tcaf.lo gmx_traj.lo gmx_velacc.lo gmx_helixorient.lo gmx_clustsize.lo gmx_mdmat.lo gmx_wham.lo correl.lo gmx_sham.lo gmx_nmtraj.lo gmx_trjconv.lo gmx_trjcat.lo gmx_trjorder.lo gmx_xpm2ps.lo gmx_editconf.lo gmx_genbox.lo gmx_genion.lo gmx_genconf.lo gmx_genpr.lo gmx_eneconv.lo gmx_vanhove.lo gmx_wheel.lo addconf.lo calcpot.lo edittop.lo ../gmxlib/libgmx.la ../mdlib/libmd.la -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte x86_64-alt-linux-gcc -shared .libs/autocorr.o .libs/expfit.o .libs/polynomials.o .libs/levenmar.o .libs/anadih.o .libs/pp2shift.o .libs/dlist.o .libs/eigio.o .libs/lsq.o .libs/cmat.o .libs/eigensolver.o .libs/nsc.o .libs/hxprops.o .libs/fitahx.o .libs/gmx_analyze.o .libs/gmx_anaeig.o .libs/gmx_angle.o .libs/gmx_bond.o .libs/gmx_bundle.o .libs/gmx_chi.o .libs/gmx_cluster.o .libs/gmx_confrms.o .libs/gmx_covar.o .libs/gmx_current.o .libs/gmx_density.o .libs/gmx_densmap.o .libs/gmx_dih.o .libs/gmx_dielectric.o .libs/gmx_kinetics.o .libs/gmx_spatial.o .libs/gmx_dipoles.o .libs/gmx_disre.o .libs/gmx_dist.o .libs/gmx_dyndom.o .libs/gmx_enemat.o .libs/gmx_energy.o .libs/gmx_lie.o .libs/gmx_filter.o .libs/gmx_gyrate.o .libs/gmx_h2order.o .libs/gmx_hbond.o .libs/gmx_helix.o .libs/gmx_mindist.o .libs/gmx_msd.o .libs/gmx_morph.o .libs/gmx_nmeig.o .libs/gmx_nmens.o .libs/gmx_order.o .libs/gmx_principal.o .libs/gmx_polystat.o .libs/gmx_potential.o .libs/gmx_rama.o .libs/gmx_rdf.o .libs/gmx_rms.o .libs/gmx_rmsdist.o .libs/gmx_rmsf.o .libs/gmx_rotacf.o .libs/gmx_saltbr.o .libs/gmx_sas.o .libs/gmx_sdf.o .libs/gmx_sgangle.o .libs/gmx_sorient.o .libs/gmx_spol.o .libs/gmx_tcaf.o .libs/gmx_traj.o .libs/gmx_velacc.o .libs/gmx_helixorient.o .libs/gmx_clustsize.o .libs/gmx_mdmat.o .libs/gmx_wham.o .libs/correl.o .libs/gmx_sham.o .libs/gmx_nmtraj.o .libs/gmx_trjconv.o .libs/gmx_trjcat.o .libs/gmx_trjorder.o .libs/gmx_xpm2ps.o .libs/gmx_editconf.o .libs/gmx_genbox.o .libs/gmx_genion.o .libs/gmx_genconf.o .libs/gmx_genpr.o .libs/gmx_eneconv.o .libs/gmx_vanhove.o .libs/gmx_wheel.o .libs/addconf.o .libs/calcpot.o .libs/edittop.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/lib64/openmpi/lib ../gmxlib/.libs/libgmx.so ../mdlib/.libs/libmd.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wl,-Rpath:/usr/lib64/openmpi/lib -Wl,-soname -Wl,libgmxana.so.5 -o .libs/libgmxana.so.5.0.0 (cd .libs && rm -f libgmxana.so.5 && ln -s libgmxana.so.5.0.0 libgmxana.so.5) (cd .libs && rm -f libgmxana.so && ln -s libgmxana.so.5.0.0 libgmxana.so) creating libgmxana.la (cd .libs && rm -f libgmxana.la && ln -s ../libgmxana.la libgmxana.la) make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o editconf editconf.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_editconf.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/editconf editconf.o .libs/gmx_editconf.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating editconf make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_nmtraj g_nmtraj.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/eigio.o .libs/gmx_nmtraj.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_nmtraj g_nmtraj.o .libs/eigio.o .libs/gmx_nmtraj.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_nmtraj make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o do_dssp do_dssp.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/do_dssp do_dssp.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating do_dssp make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o genconf genconf.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_genconf.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/genconf genconf.o .libs/gmx_genconf.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating genconf make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o genbox genbox.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/addconf.o .libs/gmx_genbox.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/genbox genbox.o .libs/addconf.o .libs/gmx_genbox.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating genbox make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o eneconv eneconv.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_eneconv.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/eneconv eneconv.o .libs/gmx_eneconv.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating eneconv make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o genrestr genrestr.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_genpr.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/genrestr genrestr.o .libs/gmx_genpr.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating genrestr make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o make_ndx make_ndx.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/make_ndx make_ndx.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating make_ndx make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o trjconv trjconv.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_trjconv.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/trjconv trjconv.o .libs/gmx_trjconv.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating trjconv make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o mk_angndx mk_angndx.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/mk_angndx mk_angndx.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating mk_angndx make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o xpm2ps xpm2ps.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_xpm2ps.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/xpm2ps xpm2ps.o .libs/gmx_xpm2ps.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating xpm2ps make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o trjorder trjorder.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_trjorder.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/trjorder trjorder.o .libs/gmx_trjorder.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating trjorder make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o wheel wheel.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_wheel.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/wheel wheel.o .libs/gmx_wheel.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating wheel make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o trjcat trjcat.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_trjcat.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/trjcat trjcat.o .libs/gmx_trjcat.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating trjcat make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o genion genion.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/calcpot.o .libs/gmx_genion.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/genion genion.o .libs/calcpot.o .libs/gmx_genion.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating genion make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o anadock anadock.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/lsq.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/anadock anadock.o .libs/lsq.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating anadock make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o make_edi make_edi.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/eigio.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/make_edi make_edi.o .libs/eigio.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating make_edi make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_bond g_bond.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/lsq.o .libs/gmx_bond.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_bond g_bond.o .libs/lsq.o .libs/gmx_bond.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_bond make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_anaeig g_anaeig.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/eigio.o .libs/gmx_anaeig.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_anaeig g_anaeig.o .libs/eigio.o .libs/gmx_anaeig.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_anaeig make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_angle g_angle.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/dlist.o .libs/anadih.o .libs/gmx_angle.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_angle g_angle.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/dlist.o .libs/anadih.o .libs/gmx_angle.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_angle make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_bundle g_bundle.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_bundle.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_bundle g_bundle.o .libs/gmx_bundle.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_bundle make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_analyze g_analyze.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_hbond.o .libs/gmx_analyze.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_analyze g_analyze.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_hbond.o .libs/gmx_analyze.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_analyze make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_cluster g_cluster.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/eigensolver.o .libs/cmat.o .libs/gmx_cluster.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_cluster g_cluster.o .libs/eigensolver.o .libs/cmat.o .libs/gmx_cluster.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_cluster make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_chi g_chi.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/pp2shift.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/dlist.o .libs/anadih.o .libs/gmx_chi.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_chi g_chi.o .libs/pp2shift.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/dlist.o .libs/anadih.o .libs/gmx_chi.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_chi make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_confrms g_confrms.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_confrms.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_confrms g_confrms.o .libs/gmx_confrms.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_confrms make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_current g_current.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_current.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_current g_current.o .libs/gmx_current.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_current make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_covar g_covar.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/eigensolver.o .libs/eigio.o .libs/gmx_covar.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_covar g_covar.o .libs/eigensolver.o .libs/eigio.o .libs/gmx_covar.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_covar make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_density g_density.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_density.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_density g_density.o .libs/gmx_density.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_density make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_densmap g_densmap.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_densmap.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_densmap g_densmap.o .libs/gmx_densmap.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_densmap make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_dih g_dih.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_dih.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_dih g_dih.o .libs/gmx_dih.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_dih make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_helixorient g_helixorient.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_helixorient.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_helixorient g_helixorient.o .libs/gmx_helixorient.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_helixorient make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_dielectric g_dielectric.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_dielectric.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_dielectric g_dielectric.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_dielectric.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_dielectric make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_principal g_principal.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_principal.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_principal g_principal.o .libs/gmx_principal.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_principal make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_dipoles g_dipoles.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/lsq.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_dipoles.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_dipoles g_dipoles.o .libs/lsq.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_dipoles.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_dipoles make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_disre g_disre.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_disre.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_disre g_disre.o .libs/gmx_disre.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_disre make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_dyndom g_dyndom.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_dyndom.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_dyndom g_dyndom.o .libs/gmx_dyndom.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_dyndom make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_enemat g_enemat.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_enemat.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_enemat g_enemat.o .libs/gmx_enemat.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_enemat make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_dist g_dist.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_dist.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_dist g_dist.o .libs/gmx_dist.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_dist make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_energy g_energy.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_energy.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_energy g_energy.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_energy.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_energy make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_lie g_lie.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_lie.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_lie g_lie.o .libs/gmx_lie.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_lie make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_filter g_filter.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_filter.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_filter g_filter.o .libs/gmx_filter.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_filter make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_gyrate g_gyrate.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_gyrate.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_gyrate g_gyrate.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_gyrate.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_gyrate make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_h2order g_h2order.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_h2order.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_h2order g_h2order.o .libs/gmx_h2order.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_h2order make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_mindist g_mindist.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_mindist.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_mindist g_mindist.o .libs/gmx_mindist.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_mindist make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_helix g_helix.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/hxprops.o .libs/fitahx.o .libs/gmx_helix.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_helix g_helix.o .libs/hxprops.o .libs/fitahx.o .libs/gmx_helix.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_helix make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_msd g_msd.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/lsq.o .libs/gmx_msd.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_msd g_msd.o .libs/lsq.o .libs/gmx_msd.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_msd make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_hbond g_hbond.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_hbond.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_hbond g_hbond.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_hbond.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_hbond make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_morph g_morph.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_morph.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_morph g_morph.o .libs/gmx_morph.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_morph make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_nmens g_nmens.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/eigensolver.o .libs/eigio.o .libs/gmx_nmens.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_nmens g_nmens.o .libs/eigensolver.o .libs/eigio.o .libs/gmx_nmens.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_nmens make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_nmeig g_nmeig.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/eigensolver.o .libs/eigio.o .libs/gmx_nmeig.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_nmeig g_nmeig.o .libs/eigensolver.o .libs/eigio.o .libs/gmx_nmeig.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_nmeig make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_order g_order.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_order.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_order g_order.o .libs/gmx_order.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_order make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_polystat g_polystat.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_polystat.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_polystat g_polystat.o .libs/gmx_polystat.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_polystat make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_potential g_potential.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_potential.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_potential g_potential.o .libs/gmx_potential.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_potential make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_rms g_rms.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/cmat.o .libs/gmx_rms.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_rms g_rms.o .libs/cmat.o .libs/gmx_rms.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_rms make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_rama g_rama.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_rama.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_rama g_rama.o .libs/gmx_rama.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_rama make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_rdf g_rdf.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_rdf.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_rdf g_rdf.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_rdf.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_rdf make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_rmsf g_rmsf.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/eigensolver.o .libs/gmx_rmsf.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_rmsf g_rmsf.o .libs/eigensolver.o .libs/gmx_rmsf.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_rmsf make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_rmsdist g_rmsdist.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_rmsdist.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_rmsdist g_rmsdist.o .libs/gmx_rmsdist.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_rmsdist make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_saltbr g_saltbr.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_saltbr.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_saltbr g_saltbr.o .libs/gmx_saltbr.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_saltbr make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_rotacf g_rotacf.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_rotacf.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_rotacf g_rotacf.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_rotacf.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_rotacf make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_sas g_sas.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/nsc.o .libs/gmx_sas.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_sas g_sas.o .libs/nsc.o .libs/gmx_sas.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_sas make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_sgangle g_sgangle.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_sgangle.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_sgangle g_sgangle.o .libs/gmx_sgangle.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_sgangle make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_sorient g_sorient.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_sorient.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_sorient g_sorient.o .libs/gmx_sorient.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_sorient make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_sham g_sham.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_sham.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_sham g_sham.o .libs/gmx_sham.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_sham make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_sdf g_sdf.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_sdf.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_sdf g_sdf.o .libs/gmx_sdf.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_sdf make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_spol g_spol.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_spol.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_spol g_spol.o .libs/gmx_spol.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_spol make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_spatial g_spatial.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_spatial.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_spatial g_spatial.o .libs/gmx_spatial.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_spatial make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_traj g_traj.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_traj.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_traj g_traj.o .libs/gmx_traj.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_traj make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_tcaf g_tcaf.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_tcaf.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_tcaf g_tcaf.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_tcaf.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_tcaf make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_vanhove g_vanhove.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_vanhove.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_vanhove g_vanhove.o .libs/gmx_vanhove.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_vanhove make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_clustsize g_clustsize.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_clustsize.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_clustsize g_clustsize.o .libs/gmx_clustsize.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_clustsize make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_velacc g_velacc.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_velacc.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_velacc g_velacc.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_velacc.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_velacc make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_mdmat g_mdmat.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_mdmat.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_mdmat g_mdmat.o .libs/gmx_mdmat.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_mdmat make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_wham g_wham.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_wham.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_wham g_wham.o .libs/gmx_wham.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_wham make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_kinetics g_kinetics.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la .libs/gmx_kinetics.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_kinetics g_kinetics.o .libs/gmx_kinetics.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_kinetics make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o sigeps sigeps.o libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/sigeps sigeps.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana.so ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.so /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating sigeps make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' Making all in ngmx make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xmb.o ../../../src/ngmx/xmb.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xutil.o ../../../src/ngmx/xutil.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o popup.o ../../../src/ngmx/popup.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ngmx.o ../../../src/ngmx/ngmx.c ../../../src/ngmx/ngmx.c: In function 'dump_xw': ../../../src/ngmx/ngmx.c:68:8: warning: variable 'rc' set but not used [-Wunused-but-set-variable] int rc; ^~ ../../../src/ngmx/ngmx.c: In function 'init_gmx': ../../../src/ngmx/ngmx.c:354:35: warning: unused variable 'nre' [-Wunused-variable] int step,natom,nre,natom_trx; ^~~ At top level: ../../../src/ngmx/ngmx.c:65:13: warning: 'dump_xw' defined but not used [-Wunused-function] static void dump_xw(char *dispname,Window w,char *fn) ^~~~~~~ In file included from ../../../src/ngmx/ngmx.c:52: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/ngmx/ngmx.c:49: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o x11.o ../../../src/ngmx/x11.c ../../../src/ngmx/x11.c:265:13: warning: 'Xrm' defined but not used [-Wunused-function] static void Xrm(int *argc, char *argv[]) ^~~ ../../../src/ngmx/x11.c:132:13: warning: 'TestEvent' defined but not used [-Wunused-function] static Bool TestEvent(Display *disp,XEvent *event,char *arg) ^~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o fgrid.o ../../../src/ngmx/fgrid.c ../../../src/ngmx/fgrid.c: In function 'GetBuf': ../../../src/ngmx/fgrid.c:101:7: warning: variable 'rc' set but not used [-Wunused-but-set-variable] int rc; ^~ ../../../src/ngmx/fgrid.c: In function 'FGridFromFile': ../../../src/ngmx/fgrid.c:346:8: warning: unused variable 'newinfile' [-Wunused-variable] char newinfile[STRLEN]; ^~~~~~~~~ ../../../src/ngmx/fgrid.c:345:9: warning: unused variable 'gmxlib' [-Wunused-variable] char *gmxlib; ^~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pulldown.o ../../../src/ngmx/pulldown.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xdlghi.o ../../../src/ngmx/xdlghi.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xdlgitem.o ../../../src/ngmx/xdlgitem.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o buttons.o ../../../src/ngmx/buttons.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nleg.o ../../../src/ngmx/nleg.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o logo.o ../../../src/ngmx/logo.c In file included from ../../../src/ngmx/logo.c:45: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dialogs.o ../../../src/ngmx/dialogs.c ../../../src/ngmx/dialogs.c:373:13: warning: 'in_set' defined but not used [-Wunused-function] static bool in_set(int i,int n,int set[]) ^~~~~~ ../../../src/ngmx/dialogs.c:240:13: warning: 'Extract' defined but not used [-Wunused-function] static void Extract(t_dlg *dlg,int ID,char *buf) ^~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o filter.o ../../../src/ngmx/filter.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o manager.o ../../../src/ngmx/manager.c ../../../src/ngmx/manager.c: In function 'set_file': ../../../src/ngmx/manager.c:182:18: warning: unused variable 'idum' [-Wunused-variable] int i,idum; ^~~~ ../../../src/ngmx/manager.c: In function 'step_man': ../../../src/ngmx/manager.c:312:15: warning: unused variable 'dum' [-Wunused-variable] int dum; ^~~ ../../../src/ngmx/manager.c:311:15: warning: unused variable 'rdum' [-Wunused-variable] real rdum; ^~~~ In file included from ../../../src/ngmx/manager.c:57: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/ngmx/manager.c:56: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/ngmx/manager.c:55: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/ngmx/manager.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ ../../../src/ngmx/manager.c: In function 'set_file': ../../../src/ngmx/manager.c:213:20: warning: '%s' directive writing up to 255 bytes into a region of size 254 [-Wformat-overflow=] sprintf(buf,"%s: %s",*man->top.name,quote); ^~ ~~~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../src/ngmx/manager.c:40: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 3 or more bytes (assuming 258) into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xdlg.o ../../../src/ngmx/xdlg.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o molps.o ../../../src/ngmx/molps.c ../../../src/ngmx/molps.c: In function 'ps_draw_mol': ../../../src/ngmx/molps.c:204:15: warning: unused variable 'ntime' [-Wunused-variable] static int ntime=0; ^~~~~ ../../../src/ngmx/molps.c:203:15: warning: unused variable 'tstr' [-Wunused-variable] static char tstr[2][20]; ^~~~ At top level: ../../../src/ngmx/molps.c:203:15: warning: 'tstr' defined but not used [-Wunused-variable] ../../../src/ngmx/molps.c:204:15: warning: 'ntime' defined but not used [-Wunused-variable] static int ntime=0; ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nmol.o ../../../src/ngmx/nmol.c ../../../src/ngmx/nmol.c: In function 'draw_box': ../../../src/ngmx/nmol.c:422:23: warning: unused variable 'tv2' [-Wunused-variable] iv2 vec2[NCUCEDGE],tv2; ^~~ In file included from ../../../src/ngmx/nmol.c:51: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/ngmx/nmol.c:51: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xrama.o ../../../src/ngmx/xrama.c ../../../src/ngmx/xrama.c: In function 'main': ../../../src/ngmx/xrama.c:319:15: warning: variable 'ramatop' set but not used [-Wunused-but-set-variable] t_topology *ramatop; ^~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/ngmx/xrama.c:50: At top level: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/ngmx/xrama.c:44: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o highway.o ../../../src/ngmx/highway.c In file included from ../../../include/statutil.h:51, from ../../../src/ngmx/highway.c:47: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/ngmx/highway.c:46: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o ngmx ngmx.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o ../mdlib/libmd.la ../gmxlib/libgmx.la -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath mkdir .libs DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/ngmx ngmx.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o -lgslcblas ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath creating ngmx make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o xrama xrama.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o ../mdlib/libmd.la ../gmxlib/libgmx.la -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/xrama xrama.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o -lgslcblas ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath creating xrama make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o highway highway.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o ../mdlib/libmd.la ../gmxlib/libgmx.la -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/highway highway.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o -lgslcblas ../mdlib/.libs/libmd.so ../gmxlib/.libs/libgmx.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath creating highway make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx' Making all in contrib make[3]: Nothing to be done for 'all'. Making all in admin make[1]: Nothing to be done for 'all'. Making all in scripts make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/scripts' cat ../../scripts/GMXRC.in | sed 's,@bindir\@,/usr/bin,' > GMXRC make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/scripts' make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/scripts' cat ../../scripts/GMXRC.bash.in | sed 's,@libdir\@,/usr/lib64,' | \ sed 's,@bindir\@,/usr/bin,' | \ sed 's,@datadir\@,/usr/share,' | \ sed 's,@mandir\@,/usr/share/man,' > GMXRC.bash make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/scripts' make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/scripts' cat ../../scripts/GMXRC.zsh.in | sed 's,@libdir\@,/usr/lib64,' | \ sed 's,@bindir\@,/usr/bin,' | \ sed 's,@datadir\@,/usr/share,' | \ sed 's,@mandir\@,/usr/share/man,' > GMXRC.zsh make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/scripts' make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/scripts' cat ../../scripts/GMXRC.csh.in | sed 's,@libdir\@,/usr/lib64,' | \ sed 's,@bindir\@,/usr/bin,' | \ sed 's,@datadir\@,/usr/share,' | \ sed 's,@mandir\@,/usr/share/man,' > GMXRC.csh make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/scripts' Making all in share Making all in top make[2]: Nothing to be done for 'all'. Making all in tutor Making all in nmr1 make[3]: Nothing to be done for 'all'. Making all in nmr2 make[3]: Nothing to be done for 'all'. Making all in speptide make[3]: Nothing to be done for 'all'. Making all in water make[3]: Nothing to be done for 'all'. Making all in gmxdemo make[3]: Nothing to be done for 'all'. Making all in methanol make[3]: Nothing to be done for 'all'. Making all in mixed make[3]: Nothing to be done for 'all'. make[3]: Nothing to be done for 'all-am'. Making all in template make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/template' cat ../../../share/template/Template.mak | \ sed 's,@LDFLAGS\@,-L/usr/lib64 -lgslcblas ,' | \ sed 's,@LIBS\@,-lmd -lgmx -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath ,' | \ sed 's,@CFLAGS\@,-g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -I/usr/include -I/usr/include/gromacs,' | \ sed 's,@CC\@,x86_64-alt-linux-gcc,' | \ sed 's,@host\@,x86_64-alt-linux-gnu,' >Makefile.x86_64-alt-linux-gnu sed: -e expression #1, char 36: unknown option to `s' make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/template' Making all in html Making all in . make[3]: Nothing to be done for 'all-am'. Making all in images make[3]: Nothing to be done for 'all'. Making all in online make[3]: Nothing to be done for 'all'. make[2]: Nothing to be done for 'all-am'. Making all in man Making all in man1 make[2]: Nothing to be done for 'all'. make[2]: Nothing to be done for 'all-am'. make[1]: Nothing to be done for 'all-am'. + popd ~/RPM/BUILD/gromacs-4.0.7 + mkdir double + pushd double ~/RPM/BUILD/gromacs-4.0.7/double ~/RPM/BUILD/gromacs-4.0.7 + buildThis double disable _d + ln -s ../configure . + CFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2' + export CFLAGS + CXXFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2' + export CXXFLAGS + FFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2' + export FFLAGS + FCFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2' + export FCFLAGS + '[' -n '' ']' ++ printf %s '-pipe -frecord-gcc-switches -Wall -g -O2' ++ sed -r 's/(^|[[:space:]]+)-[^m][^[:space:]]*//g' + ASFLAGS= + export ASFLAGS + export lt_cv_prog_cc_static_works=no + lt_cv_prog_cc_static_works=no + export lt_cv_deplibs_check_method=pass_all + lt_cv_deplibs_check_method=pass_all + readlink -e -- ./configure + xargs -ri dirname -- '{}' + xargs -ri find '{}' -type f '(' -name config.sub -or -name config.guess ')' -printf '%h/\n' + xargs -rn1 install -pm755 -- /usr/share/gnu-config/config.sub /usr/share/gnu-config/config.guess + sort -u + ./configure --build=x86_64-alt-linux --host=x86_64-alt-linux --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/lib --localstatedir=/var/lib --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --disable-dependency-tracking --disable-silent-rules --without-included-gettext --disable-rpath --enable-static=no --enable-shared --enable-double --enable-mpi --enable-prefetch-forces --enable-fortran --with-gnu-ld --with-fft=fftw3 --with-x --with-gsl --disable-mpi --program-suffix=_d --with-external-blas=-lopenblas configure: WARNING: unrecognized options: --without-included-gettext, --disable-rpath, --enable-prefetch-forces checking build system type... x86_64-alt-linux-gnu checking host system type... x86_64-alt-linux-gnu checking for a BSD-compatible install... /bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether UID '619' is supported by ustar format... yes checking whether GID '619' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar checking for x86_64-alt-linux-cc... no checking for x86_64-alt-linux-icc... no checking for x86_64-alt-linux-xlc... no checking for x86_64-alt-linux-gcc... x86_64-alt-linux-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether x86_64-alt-linux-gcc accepts -g... yes checking for x86_64-alt-linux-gcc option to accept ISO C89... none needed checking whether x86_64-alt-linux-gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of x86_64-alt-linux-gcc... none checking for x86_64-alt-linux-f77... no checking for x86_64-alt-linux-ifort... no checking for x86_64-alt-linux-xlf... no checking for x86_64-alt-linux-xlf77... no checking for x86_64-alt-linux-cf77... no checking for x86_64-alt-linux-fl32... no checking for x86_64-alt-linux-g77... no checking for x86_64-alt-linux-fort77... no checking for x86_64-alt-linux-f90... no checking for x86_64-alt-linux-xlf90... no checking for x86_64-alt-linux-pgf77... no checking for x86_64-alt-linux-cf77... no checking for x86_64-alt-linux-fort... no checking for x86_64-alt-linux-fort77... no checking for x86_64-alt-linux-pgf90... no checking for f77... f77 checking whether we are using the GNU Fortran 77 compiler... yes checking whether f77 accepts -g... yes checking dependency style of x86_64-alt-linux-gcc... none checking how to get verbose linking output from f77... -v checking for Fortran 77 libraries of f77... -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath checking for dummy main to link with Fortran 77 libraries... none checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore checking how to run the C preprocessor... x86_64-alt-linux-gcc -E checking whether x86_64-alt-linux-gcc accepts -O3... yes checking whether x86_64-alt-linux-gcc accepts -funroll-all-loops... yes ****************************************** * Using CFLAGS from environment variable * ****************************************** ****************************************** * Using FFLAGS from environment variable * ****************************************** checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking whether byte ordering is bigendian... no checking size of int... 4 checking size of long int... 8 checking size of long long int... 8 checking size of off_t... 8 checking that size_t can hold pointers... yes checking floating-point format... IEEE754 (little-endian byte and word order) checking whether ln -s works... yes checking whether make sets $(MAKE)... (cached) yes checking for a sed that does not truncate output... /bin/sed checking for ld used by x86_64-alt-linux-gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for /usr/bin/ld option to reload object files... -r checking for BSD-compatible nm... /usr/bin/nm -B checking how to recognise dependent libraries... (cached) pass_all checking dlfcn.h usability... yes checking dlfcn.h presence... yes checking for dlfcn.h... yes checking for x86_64-alt-linux-g++... x86_64-alt-linux-g++ checking whether we are using the GNU C++ compiler... yes checking whether x86_64-alt-linux-g++ accepts -g... yes checking dependency style of x86_64-alt-linux-g++... none checking how to run the C++ preprocessor... x86_64-alt-linux-g++ -E checking the maximum length of command line arguments... 32768 checking command to parse /usr/bin/nm -B output from x86_64-alt-linux-gcc object... ok checking for objdir... .libs checking for x86_64-alt-linux-ar... no checking for ar... ar checking for x86_64-alt-linux-ranlib... no checking for ranlib... ranlib checking for x86_64-alt-linux-strip... no checking for strip... strip checking if x86_64-alt-linux-gcc supports -fno-rtti -fno-exceptions... no checking for x86_64-alt-linux-gcc option to produce PIC... -fPIC checking if x86_64-alt-linux-gcc PIC flag -fPIC works... yes checking if x86_64-alt-linux-gcc static flag -static works... no checking if x86_64-alt-linux-gcc supports -c -o file.o... yes checking whether the x86_64-alt-linux-gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... cat: '/etc/ld.so.conf.d/*.conf': No such file or directory GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no configure: creating libtool appending configuration tag "CXX" to libtool checking for ld used by x86_64-alt-linux-g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the x86_64-alt-linux-g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for x86_64-alt-linux-g++ option to produce PIC... -fPIC checking if x86_64-alt-linux-g++ PIC flag -fPIC works... yes checking if x86_64-alt-linux-g++ static flag -static works... no checking if x86_64-alt-linux-g++ supports -c -o file.o... yes checking whether the x86_64-alt-linux-g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... cat: '/etc/ld.so.conf.d/*.conf': No such file or directory GNU/Linux ld.so checking how to hardcode library paths into programs... immediate appending configuration tag "F77" to libtool checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for f77 option to produce PIC... -fPIC checking if f77 PIC flag -fPIC works... yes checking if f77 static flag -static works... no checking if f77 supports -c -o file.o... yes checking whether the f77 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... cat: '/etc/ld.so.conf.d/*.conf': No such file or directory GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for _LARGEFILE_SOURCE value needed for large files... no checking for sqrt in -lm... yes checking for fftw3.h... yes checking for main in -lfftw3... yes checking rpc/rpc.h usability... yes checking rpc/rpc.h presence... yes checking for rpc/rpc.h... yes checking for rpc/xdr.h... yes checking for xdr_float in -lnsl... no checking for working memcmp... yes checking return type of signal handlers... void checking for off_t... yes checking for vprintf... yes checking for _doprnt... no checking if malloc debugging is wanted... no checking for strcasecmp... yes checking for strdup... yes checking for bool... no checking size of int... (cached) 4 checking size of long int... (cached) 8 checking size of long long int... (cached) 8 checking size of off_t... (cached) 8 checking size of void*... 8 checking for X... libraries , headers checking for gethostbyname... yes checking for connect... yes checking for remove... yes checking for shmat... yes checking for IceConnectionNumber in -lICE... yes checking gsl/gsl_version.h usability... yes checking gsl/gsl_version.h presence... yes checking for gsl/gsl_version.h... yes checking for main in -lgslcblas... yes checking for main in -lgsl... yes checking libxml/parser.h usability... no checking libxml/parser.h presence... no checking for libxml/parser.h... no checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking for strings.h... (cached) yes checking for unistd.h... (cached) yes checking for unistd.h... (cached) yes checking for an ANSI C-conforming const... yes checking for size_t... yes checking whether struct tm is in sys/time.h or time.h... time.h checking for uid_t in sys/types.h... yes checking for inline... inline checking whether your compiler can handle assembly files (*.s)... yes checking whether as fully supports X86_64 SSE2... yes checking whether byte ordering is bigendian... (cached) no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating src/gmxlib/Makefile config.status: creating src/gmxlib/gmx_blas/Makefile config.status: creating src/gmxlib/gmx_lapack/Makefile config.status: creating src/gmxlib/nonbonded/Makefile config.status: creating src/gmxlib/nonbonded/nb_kernel/Makefile config.status: creating src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/Makefile config.status: creating src/gmxlib/nonbonded/nb_kernel_ia32_sse/Makefile config.status: creating src/gmxlib/nonbonded/nb_kernel_ia32_sse2/Makefile config.status: creating src/gmxlib/nonbonded/nb_kernel_x86_64_sse/Makefile config.status: creating src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/Makefile config.status: creating src/gmxlib/nonbonded/nb_kernel_ppc_altivec/Makefile config.status: creating src/gmxlib/nonbonded/nb_kernel_ia64_single/Makefile config.status: creating src/gmxlib/nonbonded/nb_kernel_ia64_double/Makefile config.status: creating src/gmxlib/nonbonded/nb_kernel_bluegene/Makefile config.status: creating include/Makefile config.status: creating include/types/Makefile config.status: creating src/mdlib/Makefile config.status: creating src/kernel/Makefile config.status: creating src/tools/Makefile config.status: creating src/ngmx/Makefile config.status: creating src/contrib/Makefile config.status: creating scripts/Makefile config.status: creating admin/Makefile config.status: creating share/Makefile config.status: creating share/tutor/Makefile config.status: creating share/tutor/gmxdemo/Makefile config.status: creating share/tutor/nmr1/Makefile config.status: creating share/tutor/nmr2/Makefile config.status: creating share/tutor/water/Makefile config.status: creating share/tutor/mixed/Makefile config.status: creating share/tutor/methanol/Makefile config.status: creating share/tutor/speptide/Makefile config.status: creating share/template/Makefile config.status: creating share/top/Makefile config.status: creating share/html/Makefile config.status: creating share/html/images/Makefile config.status: creating share/html/online/Makefile config.status: creating man/Makefile config.status: creating man/man1/Makefile config.status: creating src/config.h config.status: executing depfiles commands configure: WARNING: unrecognized options: --without-included-gettext, --disable-rpath, --enable-prefetch-forces + sed -i 's|^hardcode_libdir_flag_spec=.*|hardcode_libdir_flag_spec=""|g' libtool + sed -i 's|^runpath_var=LD_RUN_PATH|runpath_var=DIE_RPATH_DIE|g' libtool + make -j8 Making all in include Making all in . make[2]: Nothing to be done for 'all-am'. Making all in types make[2]: Nothing to be done for 'all'. Making all in src make all-recursive Making all in gmxlib Making all in nonbonded Making all in nb_kernel_x86_64_sse2 make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel100_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel100_x86_64_sse2.s mkdir .libs mkdir: cannot create directory '.libs': File exists x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel100_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel100_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel030_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel030_x86_64_sse2.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel030_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel030_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel101_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel101_x86_64_sse2.s mkdir .libs x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel101_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel101_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel010_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel010_x86_64_sse2.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel010_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel010_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel110_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel110_x86_64_sse2.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel110_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel110_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel103_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel103_x86_64_sse2.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel103_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel103_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel104_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel104_x86_64_sse2.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel104_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel104_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel102_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel102_x86_64_sse2.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel102_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel102_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel111_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel111_x86_64_sse2.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel111_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel111_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel112_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel112_x86_64_sse2.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel112_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel112_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel113_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel113_x86_64_sse2.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel113_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel113_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel130_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel130_x86_64_sse2.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel130_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel130_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel114_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel114_x86_64_sse2.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel114_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel114_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel133_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel133_x86_64_sse2.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel133_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel133_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel131_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel131_x86_64_sse2.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel131_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel131_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel132_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel132_x86_64_sse2.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel132_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel132_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel200_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel200_x86_64_sse2.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel200_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel200_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel203_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel203_x86_64_sse2.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel203_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel203_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel201_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel201_x86_64_sse2.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel201_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel201_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel210_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel210_x86_64_sse2.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel210_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel210_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel202_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel202_x86_64_sse2.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel202_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel202_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel134_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel134_x86_64_sse2.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel134_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel134_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel204_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel204_x86_64_sse2.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel204_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel204_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel211_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel211_x86_64_sse2.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel211_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel211_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel212_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel212_x86_64_sse2.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel212_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel212_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel231_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel231_x86_64_sse2.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel231_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel231_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel230_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel230_x86_64_sse2.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel230_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel230_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel213_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel213_x86_64_sse2.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel213_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel213_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel232_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel232_x86_64_sse2.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel232_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel232_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel214_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel214_x86_64_sse2.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel214_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel214_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel233_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel233_x86_64_sse2.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel233_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel233_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel234_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel234_x86_64_sse2.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel234_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel234_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel300_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel300_x86_64_sse2.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel300_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel300_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel303_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel303_x86_64_sse2.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel303_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel303_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel301_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel301_x86_64_sse2.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel301_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel301_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel310_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel310_x86_64_sse2.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel310_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel310_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel302_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel302_x86_64_sse2.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel302_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel302_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel304_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel304_x86_64_sse2.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel304_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel304_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel311_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel311_x86_64_sse2.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel311_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel311_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel312_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel312_x86_64_sse2.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel312_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel312_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel313_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel313_x86_64_sse2.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel313_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel313_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel330_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel330_x86_64_sse2.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel330_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel330_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel331_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel331_x86_64_sse2.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel331_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel331_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel314_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel314_x86_64_sse2.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel314_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel314_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel333_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel333_x86_64_sse2.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel333_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel333_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel332_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel332_x86_64_sse2.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel332_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel332_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel334_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel334_x86_64_sse2.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel334_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel334_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel400_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel400_x86_64_sse2.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel400_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel400_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel410_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel410_x86_64_sse2.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel410_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel410_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel_x86_64_sse2_test.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel_x86_64_sse2_test.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel_x86_64_sse2_test.s -fPIC -DPIC -o .libs/nb_kernel_x86_64_sse2_test.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel430_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel430_x86_64_sse2.s x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel430_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel430_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2 -I../../../../src -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel_x86_64_sse2.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2 -I../../../../src -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel_x86_64_sse2.c -fPIC -DPIC -o .libs/nb_kernel_x86_64_sse2.o ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel_x86_64_sse2.c: In function 'nb_kernel_x86_64_sse2_test': ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel_x86_64_sse2.c:206:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if(log) ^~ ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel_x86_64_sse2.c:209:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' nb_kernel_x86_64_sse2_present = TRUE; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o libnb_kernel_x86_64_sse2.la nb_kernel010_x86_64_sse2.lo nb_kernel030_x86_64_sse2.lo nb_kernel100_x86_64_sse2.lo nb_kernel101_x86_64_sse2.lo nb_kernel102_x86_64_sse2.lo nb_kernel103_x86_64_sse2.lo nb_kernel104_x86_64_sse2.lo nb_kernel110_x86_64_sse2.lo nb_kernel111_x86_64_sse2.lo nb_kernel112_x86_64_sse2.lo nb_kernel113_x86_64_sse2.lo nb_kernel114_x86_64_sse2.lo nb_kernel130_x86_64_sse2.lo nb_kernel131_x86_64_sse2.lo nb_kernel132_x86_64_sse2.lo nb_kernel133_x86_64_sse2.lo nb_kernel134_x86_64_sse2.lo nb_kernel200_x86_64_sse2.lo nb_kernel201_x86_64_sse2.lo nb_kernel202_x86_64_sse2.lo nb_kernel203_x86_64_sse2.lo nb_kernel204_x86_64_sse2.lo nb_kernel210_x86_64_sse2.lo nb_kernel211_x86_64_sse2.lo nb_kernel212_x86_64_sse2.lo nb_kernel213_x86_64_sse2.lo nb_kernel214_x86_64_sse2.lo nb_kernel230_x86_64_sse2.lo nb_kernel231_x86_64_sse2.lo nb_kernel232_x86_64_sse2.lo nb_kernel233_x86_64_sse2.lo nb_kernel234_x86_64_sse2.lo nb_kernel300_x86_64_sse2.lo nb_kernel301_x86_64_sse2.lo nb_kernel302_x86_64_sse2.lo nb_kernel303_x86_64_sse2.lo nb_kernel304_x86_64_sse2.lo nb_kernel310_x86_64_sse2.lo nb_kernel311_x86_64_sse2.lo nb_kernel312_x86_64_sse2.lo nb_kernel313_x86_64_sse2.lo nb_kernel314_x86_64_sse2.lo nb_kernel330_x86_64_sse2.lo nb_kernel331_x86_64_sse2.lo nb_kernel332_x86_64_sse2.lo nb_kernel333_x86_64_sse2.lo nb_kernel334_x86_64_sse2.lo nb_kernel400_x86_64_sse2.lo nb_kernel410_x86_64_sse2.lo nb_kernel430_x86_64_sse2.lo nb_kernel_x86_64_sse2_test.lo nb_kernel_x86_64_sse2.lo -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath ar cru .libs/libnb_kernel_x86_64_sse2.a .libs/nb_kernel010_x86_64_sse2.o .libs/nb_kernel030_x86_64_sse2.o .libs/nb_kernel100_x86_64_sse2.o .libs/nb_kernel101_x86_64_sse2.o .libs/nb_kernel102_x86_64_sse2.o .libs/nb_kernel103_x86_64_sse2.o .libs/nb_kernel104_x86_64_sse2.o .libs/nb_kernel110_x86_64_sse2.o .libs/nb_kernel111_x86_64_sse2.o .libs/nb_kernel112_x86_64_sse2.o .libs/nb_kernel113_x86_64_sse2.o .libs/nb_kernel114_x86_64_sse2.o .libs/nb_kernel130_x86_64_sse2.o .libs/nb_kernel131_x86_64_sse2.o .libs/nb_kernel132_x86_64_sse2.o .libs/nb_kernel133_x86_64_sse2.o .libs/nb_kernel134_x86_64_sse2.o .libs/nb_kernel200_x86_64_sse2.o .libs/nb_kernel201_x86_64_sse2.o .libs/nb_kernel202_x86_64_sse2.o .libs/nb_kernel203_x86_64_sse2.o .libs/nb_kernel204_x86_64_sse2.o .libs/nb_kernel210_x86_64_sse2.o .libs/nb_kernel211_x86_64_sse2.o .libs/nb_kernel212_x86_64_sse2.o .libs/nb_kernel213_x86_64_sse2.o .libs/nb_kernel214_x86_64_sse2.o .libs/nb_kernel230_x86_64_sse2.o .libs/nb_kernel231_x86_64_sse2.o .libs/nb_kernel232_x86_64_sse2.o .libs/nb_kernel233_x86_64_sse2.o .libs/nb_kernel234_x86_64_sse2.o .libs/nb_kernel300_x86_64_sse2.o .libs/nb_kernel301_x86_64_sse2.o .libs/nb_kernel302_x86_64_sse2.o .libs/nb_kernel303_x86_64_sse2.o .libs/nb_kernel304_x86_64_sse2.o .libs/nb_kernel310_x86_64_sse2.o .libs/nb_kernel311_x86_64_sse2.o .libs/nb_kernel312_x86_64_sse2.o .libs/nb_kernel313_x86_64_sse2.o .libs/nb_kernel314_x86_64_sse2.o .libs/nb_kernel330_x86_64_sse2.o .libs/nb_kernel331_x86_64_sse2.o .libs/nb_kernel332_x86_64_sse2.o .libs/nb_kernel333_x86_64_sse2.o .libs/nb_kernel334_x86_64_sse2.o .libs/nb_kernel400_x86_64_sse2.o .libs/nb_kernel410_x86_64_sse2.o .libs/nb_kernel430_x86_64_sse2.o .libs/nb_kernel_x86_64_sse2_test.o .libs/nb_kernel_x86_64_sse2.o ranlib .libs/libnb_kernel_x86_64_sse2.a creating libnb_kernel_x86_64_sse2.la (cd .libs && rm -f libnb_kernel_x86_64_sse2.la && ln -s ../libnb_kernel_x86_64_sse2.la libnb_kernel_x86_64_sse2.la) make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' Making all in nb_kernel make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_common.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_common.c make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_outerloop.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_outerloop.c make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb.c make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_innerloop.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_innerloop.c make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_metacode.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_metacode.c make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_interactions.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_interactions.c make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_declarations.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_declarations.c make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -o mknb mknb.o mknb_metacode.o mknb_common.o mknb_declarations.o mknb_outerloop.o mknb_innerloop.o mknb_interactions.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' rm -f kernel-stamp ./mknb -double -software_invsqrt -fortran >>> Gromacs nonbonded kernel generator (-h for help) >>> Generating double precision functions in Fortran77. >>> Using Gromacs software version of 1/sqrt(x). Progress: 1% Progress: 2% Progress: 4% Progress: 5% Progress: 7% Progress: 8% Progress: 10% Progress: 11% Progress: 13% Progress: 14% Progress: 16% Progress: 17% Progress: 19% Progress: 20% Progress: 22% Progress: 23% Progress: 25% Progress: 26% Progress: 28% Progress: 29% Progress: 31% Progress: 32% Progress: 34% Progress: 35% Progress: 37% Progress: 38% Progress: 40% Progress: 41% Progress: 43% Progress: 44% Progress: 46% Progress: 47% Progress: 49% Progress: 50% Progress: 52% Progress: 53% Progress: 55% Progress: 56% Progress: 58% Progress: 59% Progress: 61% Progress: 62% Progress: 64% Progress: 65% Progress: 67% Progress: 68% Progress: 70% Progress: 71% Progress: 73% Progress: 74% Progress: 76% Progress: 77% Progress: 79% Progress: 80% Progress: 82% Progress: 83% Progress: 85% Progress: 86% Progress: 88% Progress: 89% Progress: 91% Progress: 92% Progress: 94% Progress: 95% Progress: 97% Progress: 98% Progress: 100% make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make all-am make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel.lo ../../../../../src/gmxlib/nonbonded/nb_kernel/nb_kernel.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel/nb_kernel.c -fPIC -DPIC -o .libs/nb_kernel.o make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel010_f.lo nb_kernel010_f.f mkdir .libs f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel010_f.f -fPIC -o .libs/nb_kernel010_f.o nb_kernel010_f.f:36:38: & charge, 1 Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:37:37: & facel, 1 Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:40:34: & Vc, 1 Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:169:38: & charge, 1 Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:185:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:172:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:181:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:170:37: & facel, 1 Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:168:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:165:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:183:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:182:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:180:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:171:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:186:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:184:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:178:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:173:34: & Vc, 1 Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:179:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:189:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel100_f.lo nb_kernel100_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel100_f.f -fPIC -o .libs/nb_kernel100_f.o nb_kernel100_f.f:125:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel100_f.f:272:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel100_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:204:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:191:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:200:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:187:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:184:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:202:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:201:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:199:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:190:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:205:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:203:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:194:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:197:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:193:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:195:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:198:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:196:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:208:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel020_f.lo nb_kernel020_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel020_f.f -fPIC -o .libs/nb_kernel020_f.o nb_kernel020_f.f:129:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel020_f.f:287:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel020_f.f:36:38: & charge, 1 Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:37:37: & facel, 1 Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:40:34: & Vc, 1 Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:198:38: & charge, 1 Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:214:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:201:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:210:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:199:37: & facel, 1 Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:197:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:194:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:212:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:211:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:209:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:200:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:215:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:213:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:207:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:202:34: & Vc, 1 Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:208:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:218:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel030_f.lo nb_kernel030_f.f mkdir .libs mkdir: cannot create directory '.libs': File exists f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel030_f.f -fPIC -o .libs/nb_kernel030_f.o nb_kernel030_f.f:132:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel030_f.f:146:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel030_f.f:310:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel030_f.f:324:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel030_f.f:36:38: & charge, 1 Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:37:37: & facel, 1 Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:40:34: & Vc, 1 Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:220:38: & charge, 1 Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:236:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:223:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:232:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:221:37: & facel, 1 Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:219:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:216:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:234:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:233:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:231:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:222:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:237:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:235:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:224:34: & Vc, 1 Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:240:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel103_f.lo nb_kernel103_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel103_f.f -fPIC -o .libs/nb_kernel103_f.o nb_kernel103_f.f:153:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel103_f.f:162:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel103_f.f:171:29: fval = rsq41 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel103_f.f:374:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel103_f.f:383:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel103_f.f:392:29: fval = rsq41 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel103_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:284:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:271:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:280:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:267:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:264:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:282:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:281:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:279:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:270:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:285:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:283:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:274:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:277:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:273:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:275:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:278:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:276:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:288:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel101_f.lo nb_kernel101_f.f mkdir .libs mkdir: cannot create directory '.libs': File exists f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel101_f.f -fPIC -o .libs/nb_kernel101_f.o nb_kernel101_f.f:153:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel101_f.f:162:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel101_f.f:171:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel101_f.f:374:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel101_f.f:383:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel101_f.f:392:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel101_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:284:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:271:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:280:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:267:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:264:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:282:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:281:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:279:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:270:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:285:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:283:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:274:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:277:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:273:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:275:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:278:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:276:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:288:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel110_f.lo nb_kernel110_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel110_f.f -fPIC -o .libs/nb_kernel110_f.o nb_kernel110_f.f:133:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel110_f.f:297:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel110_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:220:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:207:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:216:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:203:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:200:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:218:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:217:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:215:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:206:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:221:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:219:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:213:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:214:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:224:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel102_f.lo nb_kernel102_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel102_f.f -fPIC -o .libs/nb_kernel102_f.o nb_kernel102_f.f:193:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel102_f.f:202:29: fval = rsq12 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel102_f.f:211:29: fval = rsq13 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel102_f.f:220:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel102_f.f:229:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel102_f.f:238:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel102_f.f:247:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel102_f.f:256:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel102_f.f:265:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel102_f.f:592:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel102_f.f:601:29: fval = rsq12 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel102_f.f:610:29: fval = rsq13 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel102_f.f:619:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel102_f.f:628:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel102_f.f:637:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel102_f.f:646:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel102_f.f:655:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel102_f.f:664:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel102_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:462:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:449:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:458:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:445:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:442:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:460:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:459:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:457:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:448:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:463:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:461:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:452:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:455:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:451:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:453:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:456:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:454:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:466:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel111_f.lo nb_kernel111_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel111_f.f -fPIC -o .libs/nb_kernel111_f.o nb_kernel111_f.f:161:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel111_f.f:170:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel111_f.f:179:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel111_f.f:399:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel111_f.f:408:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel111_f.f:417:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel111_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:300:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:287:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:296:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:283:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:280:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:298:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:297:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:295:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:286:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:301:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:299:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:293:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:294:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:304:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel120_f.lo nb_kernel120_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel120_f.f -fPIC -o .libs/nb_kernel120_f.o nb_kernel120_f.f:133:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel120_f.f:299:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel120_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:222:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:209:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:218:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:205:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:202:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:220:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:219:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:217:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:208:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:223:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:221:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:215:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:216:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:226:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel113_f.lo nb_kernel113_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel113_f.f -fPIC -o .libs/nb_kernel113_f.o nb_kernel113_f.f:174:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel113_f.f:183:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel113_f.f:192:29: fval = rsq41 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel113_f.f:435:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel113_f.f:444:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel113_f.f:453:29: fval = rsq41 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel113_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:326:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:313:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:322:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:309:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:306:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:324:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:323:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:321:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:312:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:327:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:325:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:319:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:320:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:330:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel104_f.lo nb_kernel104_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel104_f.f -fPIC -o .libs/nb_kernel104_f.o nb_kernel104_f.f:193:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel104_f.f:202:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel104_f.f:211:29: fval = rsq24 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel104_f.f:220:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel104_f.f:229:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel104_f.f:238:29: fval = rsq34 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel104_f.f:247:29: fval = rsq42 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel104_f.f:256:29: fval = rsq43 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel104_f.f:265:29: fval = rsq44 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel104_f.f:592:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel104_f.f:601:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel104_f.f:610:29: fval = rsq24 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel104_f.f:619:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel104_f.f:628:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel104_f.f:637:29: fval = rsq34 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel104_f.f:646:29: fval = rsq42 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel104_f.f:655:29: fval = rsq43 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel104_f.f:664:29: fval = rsq44 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel104_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:462:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:449:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:458:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:445:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:442:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:460:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:459:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:457:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:448:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:463:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:461:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:452:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:455:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:451:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:453:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:456:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:454:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:466:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel112_f.lo nb_kernel112_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel112_f.f -fPIC -o .libs/nb_kernel112_f.o nb_kernel112_f.f:202:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel112_f.f:211:29: fval = rsq12 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel112_f.f:220:29: fval = rsq13 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel112_f.f:229:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel112_f.f:238:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel112_f.f:247:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel112_f.f:256:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel112_f.f:265:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel112_f.f:274:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel112_f.f:616:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel112_f.f:625:29: fval = rsq12 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel112_f.f:634:29: fval = rsq13 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel112_f.f:643:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel112_f.f:652:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel112_f.f:661:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel112_f.f:670:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel112_f.f:679:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel112_f.f:688:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel112_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:476:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:463:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:472:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:459:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:456:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:474:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:473:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:471:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:462:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:477:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:475:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:469:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:470:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:480:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel121_f.lo nb_kernel121_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel121_f.f -fPIC -o .libs/nb_kernel121_f.o nb_kernel121_f.f:161:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel121_f.f:170:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel121_f.f:179:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel121_f.f:401:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel121_f.f:410:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel121_f.f:419:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel121_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:302:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:289:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:298:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:285:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:282:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:300:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:299:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:297:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:288:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:303:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:301:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:295:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:296:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:306:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel114_f.lo nb_kernel114_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel114_f.f -fPIC -o .libs/nb_kernel114_f.o nb_kernel114_f.f:219:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel114_f.f:228:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel114_f.f:237:29: fval = rsq24 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel114_f.f:246:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel114_f.f:255:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel114_f.f:264:29: fval = rsq34 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel114_f.f:273:29: fval = rsq42 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel114_f.f:282:29: fval = rsq43 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel114_f.f:291:29: fval = rsq44 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel114_f.f:660:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel114_f.f:669:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel114_f.f:678:29: fval = rsq24 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel114_f.f:687:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel114_f.f:696:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel114_f.f:705:29: fval = rsq34 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel114_f.f:714:29: fval = rsq42 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel114_f.f:723:29: fval = rsq43 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel114_f.f:732:29: fval = rsq44 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel114_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:506:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:493:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:502:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:489:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:486:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:504:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:503:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:501:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:492:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:507:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:505:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:499:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:500:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:510:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel130_f.lo nb_kernel130_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel130_f.f -fPIC -o .libs/nb_kernel130_f.o nb_kernel130_f.f:137:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel130_f.f:155:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel130_f.f:325:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel130_f.f:342:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel130_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:247:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:234:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:243:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:230:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:227:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:245:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:244:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:242:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:233:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:248:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:246:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:251:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel123_f.lo nb_kernel123_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel123_f.f -fPIC -o .libs/nb_kernel123_f.o nb_kernel123_f.f:173:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel123_f.f:182:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel123_f.f:191:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel123_f.f:200:29: fval = rsq41 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel123_f.f:445:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel123_f.f:454:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel123_f.f:463:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel123_f.f:472:29: fval = rsq41 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel123_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:337:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:324:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:333:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:320:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:317:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:335:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:334:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:332:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:323:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:338:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:336:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:330:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:331:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:341:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel122_f.lo nb_kernel122_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel122_f.f -fPIC -o .libs/nb_kernel122_f.o nb_kernel122_f.f:203:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel122_f.f:212:29: fval = rsq12 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel122_f.f:221:29: fval = rsq13 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel122_f.f:230:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel122_f.f:239:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel122_f.f:248:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel122_f.f:257:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel122_f.f:266:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel122_f.f:275:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel122_f.f:619:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel122_f.f:628:29: fval = rsq12 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel122_f.f:637:29: fval = rsq13 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel122_f.f:646:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel122_f.f:655:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel122_f.f:664:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel122_f.f:673:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel122_f.f:682:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel122_f.f:691:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel122_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:478:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:465:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:474:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:461:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:458:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:476:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:475:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:473:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:464:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:479:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:477:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:471:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:472:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:482:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel131_f.lo nb_kernel131_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel131_f.f -fPIC -o .libs/nb_kernel131_f.o nb_kernel131_f.f:165:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel131_f.f:174:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel131_f.f:183:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel131_f.f:202:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel131_f.f:427:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel131_f.f:436:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel131_f.f:445:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel131_f.f:463:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel131_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:327:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:314:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:323:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:310:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:307:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:325:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:324:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:322:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:313:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:328:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:326:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:331:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel200_f.lo nb_kernel200_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel200_f.f -fPIC -o .libs/nb_kernel200_f.o nb_kernel200_f.f:126:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel200_f.f:275:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel200_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:206:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:202:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:189:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:186:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:204:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:203:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:201:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:207:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:205:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:196:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:199:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:195:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:197:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:200:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:198:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:210:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel124_f.lo nb_kernel124_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel124_f.f -fPIC -o .libs/nb_kernel124_f.o nb_kernel124_f.f:219:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel124_f.f:228:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel124_f.f:237:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel124_f.f:246:29: fval = rsq24 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel124_f.f:255:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel124_f.f:264:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel124_f.f:273:29: fval = rsq34 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel124_f.f:282:29: fval = rsq42 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel124_f.f:291:29: fval = rsq43 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel124_f.f:300:29: fval = rsq44 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel124_f.f:671:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel124_f.f:680:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel124_f.f:689:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel124_f.f:698:29: fval = rsq24 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel124_f.f:707:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel124_f.f:716:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel124_f.f:725:29: fval = rsq34 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel124_f.f:734:29: fval = rsq42 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel124_f.f:743:29: fval = rsq43 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel124_f.f:752:29: fval = rsq44 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel124_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:517:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:504:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:513:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:500:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:497:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:515:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:514:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:512:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:503:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:518:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:516:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:510:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:511:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:521:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel133_f.lo nb_kernel133_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel133_f.f -fPIC -o .libs/nb_kernel133_f.o nb_kernel133_f.f:177:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel133_f.f:186:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel133_f.f:195:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel133_f.f:204:29: fval = rsq41 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel133_f.f:218:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel133_f.f:469:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel133_f.f:478:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel133_f.f:487:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel133_f.f:496:29: fval = rsq41 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel133_f.f:510:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel133_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:360:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:347:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:356:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:343:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:340:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:358:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:357:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:355:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:346:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:361:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:359:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:364:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel201_f.lo nb_kernel201_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel201_f.f -fPIC -o .libs/nb_kernel201_f.o nb_kernel201_f.f:154:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel201_f.f:163:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel201_f.f:172:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel201_f.f:379:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel201_f.f:388:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel201_f.f:397:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel201_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:288:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:284:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:271:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:268:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:286:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:285:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:283:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:289:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:287:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:278:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:281:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:277:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:279:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:282:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:280:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:292:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel132_f.lo nb_kernel132_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel132_f.f -fPIC -o .libs/nb_kernel132_f.o nb_kernel132_f.f:206:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel132_f.f:215:29: fval = rsq12 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel132_f.f:224:29: fval = rsq13 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel132_f.f:233:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel132_f.f:242:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel132_f.f:251:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel132_f.f:260:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel132_f.f:269:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel132_f.f:278:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel132_f.f:293:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel132_f.f:644:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel132_f.f:653:29: fval = rsq12 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel132_f.f:662:29: fval = rsq13 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel132_f.f:671:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel132_f.f:680:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel132_f.f:689:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel132_f.f:698:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel132_f.f:707:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel132_f.f:716:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel132_f.f:730:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel132_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:503:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:490:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:499:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:486:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:483:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:501:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:500:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:498:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:489:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:504:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:502:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:507:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel203_f.lo nb_kernel203_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel203_f.f -fPIC -o .libs/nb_kernel203_f.o nb_kernel203_f.f:154:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel203_f.f:163:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel203_f.f:172:29: fval = rsq41 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel203_f.f:379:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel203_f.f:388:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel203_f.f:397:29: fval = rsq41 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel203_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:288:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:284:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:271:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:268:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:286:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:285:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:283:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:289:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:287:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:278:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:281:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:277:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:279:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:282:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:280:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:292:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel210_f.lo nb_kernel210_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel210_f.f -fPIC -o .libs/nb_kernel210_f.o nb_kernel210_f.f:134:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel210_f.f:301:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel210_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:223:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:219:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:206:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:203:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:221:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:220:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:218:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:224:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:222:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:216:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:217:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:227:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel134_f.lo nb_kernel134_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel134_f.f -fPIC -o .libs/nb_kernel134_f.o nb_kernel134_f.f:222:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel134_f.f:231:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel134_f.f:240:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel134_f.f:249:29: fval = rsq24 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel134_f.f:258:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel134_f.f:267:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel134_f.f:276:29: fval = rsq34 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel134_f.f:285:29: fval = rsq42 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel134_f.f:294:29: fval = rsq43 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel134_f.f:303:29: fval = rsq44 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel134_f.f:314:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel134_f.f:694:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel134_f.f:703:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel134_f.f:712:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel134_f.f:721:29: fval = rsq24 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel134_f.f:730:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel134_f.f:739:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel134_f.f:748:29: fval = rsq34 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel134_f.f:757:29: fval = rsq42 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel134_f.f:766:29: fval = rsq43 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel134_f.f:775:29: fval = rsq44 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel134_f.f:786:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel134_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:540:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:527:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:536:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:523:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:520:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:538:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:537:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:535:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:526:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:541:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:539:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:544:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel202_f.lo nb_kernel202_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel202_f.f -fPIC -o .libs/nb_kernel202_f.o nb_kernel202_f.f:194:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel202_f.f:203:29: fval = rsq12 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel202_f.f:212:29: fval = rsq13 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel202_f.f:221:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel202_f.f:230:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel202_f.f:239:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel202_f.f:248:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel202_f.f:257:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel202_f.f:266:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel202_f.f:603:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel202_f.f:612:29: fval = rsq12 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel202_f.f:621:29: fval = rsq13 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel202_f.f:630:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel202_f.f:639:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel202_f.f:648:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel202_f.f:657:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel202_f.f:666:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel202_f.f:675:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel202_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:472:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:468:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:455:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:452:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:470:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:469:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:467:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:473:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:471:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:462:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:465:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:461:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:463:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:466:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:464:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:476:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel211_f.lo nb_kernel211_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel211_f.f -fPIC -o .libs/nb_kernel211_f.o nb_kernel211_f.f:162:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel211_f.f:171:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel211_f.f:180:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel211_f.f:405:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel211_f.f:414:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel211_f.f:423:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel211_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:305:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:301:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:288:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:285:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:303:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:302:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:300:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:306:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:304:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:298:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:299:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:309:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel204_f.lo nb_kernel204_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel204_f.f -fPIC -o .libs/nb_kernel204_f.o nb_kernel204_f.f:194:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel204_f.f:203:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel204_f.f:212:29: fval = rsq24 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel204_f.f:221:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel204_f.f:230:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel204_f.f:239:29: fval = rsq34 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel204_f.f:248:29: fval = rsq42 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel204_f.f:257:29: fval = rsq43 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel204_f.f:266:29: fval = rsq44 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel204_f.f:603:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel204_f.f:612:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel204_f.f:621:29: fval = rsq24 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel204_f.f:630:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel204_f.f:639:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel204_f.f:648:29: fval = rsq34 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel204_f.f:657:29: fval = rsq42 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel204_f.f:666:29: fval = rsq43 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel204_f.f:675:29: fval = rsq44 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel204_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:472:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:468:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:455:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:452:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:470:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:469:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:467:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:473:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:471:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:462:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:465:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:461:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:463:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:466:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:464:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:476:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel213_f.lo nb_kernel213_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel213_f.f -fPIC -o .libs/nb_kernel213_f.o nb_kernel213_f.f:175:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel213_f.f:184:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel213_f.f:193:29: fval = rsq41 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel213_f.f:440:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel213_f.f:449:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel213_f.f:458:29: fval = rsq41 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel213_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:330:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:326:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:313:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:310:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:328:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:327:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:325:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:331:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:329:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:323:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:324:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:334:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel220_f.lo nb_kernel220_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel220_f.f -fPIC -o .libs/nb_kernel220_f.o nb_kernel220_f.f:134:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel220_f.f:303:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel220_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:225:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:221:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:208:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:205:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:223:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:222:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:220:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:226:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:224:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:218:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:219:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:229:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel212_f.lo nb_kernel212_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel212_f.f -fPIC -o .libs/nb_kernel212_f.o nb_kernel212_f.f:203:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel212_f.f:212:29: fval = rsq12 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel212_f.f:221:29: fval = rsq13 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel212_f.f:230:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel212_f.f:239:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel212_f.f:248:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel212_f.f:257:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel212_f.f:266:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel212_f.f:275:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel212_f.f:628:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel212_f.f:637:29: fval = rsq12 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel212_f.f:646:29: fval = rsq13 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel212_f.f:655:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel212_f.f:664:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel212_f.f:673:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel212_f.f:682:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel212_f.f:691:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel212_f.f:700:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel212_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:487:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:483:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:470:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:467:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:485:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:484:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:482:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:488:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:486:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:480:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:481:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:491:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel221_f.lo nb_kernel221_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel221_f.f -fPIC -o .libs/nb_kernel221_f.o nb_kernel221_f.f:162:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel221_f.f:171:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel221_f.f:180:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel221_f.f:407:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel221_f.f:416:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel221_f.f:425:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel221_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:307:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:303:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:290:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:287:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:305:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:304:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:302:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:308:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:306:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:300:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:301:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:311:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel214_f.lo nb_kernel214_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel214_f.f -fPIC -o .libs/nb_kernel214_f.o nb_kernel214_f.f:220:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel214_f.f:229:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel214_f.f:238:29: fval = rsq24 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel214_f.f:247:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel214_f.f:256:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel214_f.f:265:29: fval = rsq34 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel214_f.f:274:29: fval = rsq42 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel214_f.f:283:29: fval = rsq43 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel214_f.f:292:29: fval = rsq44 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel214_f.f:671:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel214_f.f:680:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel214_f.f:689:29: fval = rsq24 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel214_f.f:698:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel214_f.f:707:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel214_f.f:716:29: fval = rsq34 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel214_f.f:725:29: fval = rsq42 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel214_f.f:734:29: fval = rsq43 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel214_f.f:743:29: fval = rsq44 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel214_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:516:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:512:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:499:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:496:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:514:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:513:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:511:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:517:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:515:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:509:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:510:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:520:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel223_f.lo nb_kernel223_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel223_f.f -fPIC -o .libs/nb_kernel223_f.o nb_kernel223_f.f:174:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel223_f.f:183:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel223_f.f:192:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel223_f.f:201:29: fval = rsq41 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel223_f.f:450:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel223_f.f:459:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel223_f.f:468:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel223_f.f:477:29: fval = rsq41 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel223_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:341:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:337:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:324:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:321:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:339:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:338:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:336:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:342:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:340:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:334:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:335:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:345:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel230_f.lo nb_kernel230_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel230_f.f -fPIC -o .libs/nb_kernel230_f.o nb_kernel230_f.f:138:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel230_f.f:157:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel230_f.f:328:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel230_f.f:346:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel230_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:249:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:245:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:232:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:229:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:247:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:246:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:244:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:250:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:248:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:253:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel231_f.lo nb_kernel231_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel231_f.f -fPIC -o .libs/nb_kernel231_f.o nb_kernel231_f.f:166:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel231_f.f:175:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel231_f.f:184:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel231_f.f:204:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel231_f.f:432:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel231_f.f:441:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel231_f.f:450:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel231_f.f:469:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel231_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:331:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:327:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:314:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:311:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:329:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:328:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:326:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:332:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:330:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:335:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel222_f.lo nb_kernel222_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel222_f.f -fPIC -o .libs/nb_kernel222_f.o nb_kernel222_f.f:204:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel222_f.f:213:29: fval = rsq12 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel222_f.f:222:29: fval = rsq13 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel222_f.f:231:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel222_f.f:240:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel222_f.f:249:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel222_f.f:258:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel222_f.f:267:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel222_f.f:276:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel222_f.f:631:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel222_f.f:640:29: fval = rsq12 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel222_f.f:649:29: fval = rsq13 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel222_f.f:658:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel222_f.f:667:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel222_f.f:676:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel222_f.f:685:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel222_f.f:694:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel222_f.f:703:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel222_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:489:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:485:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:472:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:469:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:487:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:486:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:484:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:490:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:488:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:482:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:483:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:493:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel300_f.lo nb_kernel300_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel300_f.f -fPIC -o .libs/nb_kernel300_f.o nb_kernel300_f.f:129:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel300_f.f:141:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel300_f.f:292:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel300_f.f:304:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel300_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:221:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:208:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:217:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:204:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:201:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:219:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:218:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:216:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:207:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:222:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:220:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:211:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:210:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:212:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:213:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:225:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel233_f.lo nb_kernel233_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel233_f.f -fPIC -o .libs/nb_kernel233_f.o nb_kernel233_f.f:178:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel233_f.f:187:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel233_f.f:196:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel233_f.f:205:29: fval = rsq41 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel233_f.f:219:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel233_f.f:474:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel233_f.f:483:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel233_f.f:492:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel233_f.f:501:29: fval = rsq41 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel233_f.f:515:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel233_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:364:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:360:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:347:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:344:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:362:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:361:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:359:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:365:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:363:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:368:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel224_f.lo nb_kernel224_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel224_f.f -fPIC -o .libs/nb_kernel224_f.o nb_kernel224_f.f:220:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel224_f.f:229:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel224_f.f:238:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel224_f.f:247:29: fval = rsq24 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel224_f.f:256:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel224_f.f:265:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel224_f.f:274:29: fval = rsq34 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel224_f.f:283:29: fval = rsq42 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel224_f.f:292:29: fval = rsq43 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel224_f.f:301:29: fval = rsq44 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel224_f.f:682:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel224_f.f:691:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel224_f.f:700:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel224_f.f:709:29: fval = rsq24 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel224_f.f:718:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel224_f.f:727:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel224_f.f:736:29: fval = rsq34 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel224_f.f:745:29: fval = rsq42 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel224_f.f:754:29: fval = rsq43 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel224_f.f:763:29: fval = rsq44 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel224_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:527:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:523:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:510:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:507:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:525:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:524:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:522:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:528:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:526:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:520:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:521:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:531:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel301_f.lo nb_kernel301_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel301_f.f -fPIC -o .libs/nb_kernel301_f.o nb_kernel301_f.f:157:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel301_f.f:166:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel301_f.f:175:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel301_f.f:188:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel301_f.f:215:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel301_f.f:241:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel301_f.f:420:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel301_f.f:429:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel301_f.f:438:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel301_f.f:451:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel301_f.f:466:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel301_f.f:480:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel301_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:327:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:314:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:323:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:310:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:307:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:325:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:324:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:322:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:313:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:328:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:326:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:317:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:316:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:318:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:319:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:331:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel232_f.lo nb_kernel232_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel232_f.f -fPIC -o .libs/nb_kernel232_f.o nb_kernel232_f.f:207:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel232_f.f:216:29: fval = rsq12 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel232_f.f:225:29: fval = rsq13 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel232_f.f:234:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel232_f.f:243:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel232_f.f:252:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel232_f.f:261:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel232_f.f:270:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel232_f.f:279:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel232_f.f:295:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel232_f.f:655:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel232_f.f:664:29: fval = rsq12 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel232_f.f:673:29: fval = rsq13 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel232_f.f:682:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel232_f.f:691:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel232_f.f:700:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel232_f.f:709:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel232_f.f:718:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel232_f.f:727:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel232_f.f:742:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel232_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:513:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:509:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:496:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:493:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:511:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:510:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:508:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:514:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:512:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:517:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel303_f.lo nb_kernel303_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel303_f.f -fPIC -o .libs/nb_kernel303_f.o nb_kernel303_f.f:157:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel303_f.f:166:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel303_f.f:175:29: fval = rsq41 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel303_f.f:188:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel303_f.f:214:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel303_f.f:241:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel303_f.f:420:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel303_f.f:429:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel303_f.f:438:29: fval = rsq41 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel303_f.f:451:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel303_f.f:465:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel303_f.f:480:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel303_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:327:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:314:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:323:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:310:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:307:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:325:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:324:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:322:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:313:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:328:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:326:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:317:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:316:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:318:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:319:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:331:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel310_f.lo nb_kernel310_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel310_f.f -fPIC -o .libs/nb_kernel310_f.o nb_kernel310_f.f:138:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel310_f.f:154:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel310_f.f:320:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel310_f.f:336:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel310_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:240:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:227:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:236:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:223:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:220:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:238:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:237:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:235:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:226:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:241:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:239:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:244:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel234_f.lo nb_kernel234_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel234_f.f -fPIC -o .libs/nb_kernel234_f.o nb_kernel234_f.f:223:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel234_f.f:232:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel234_f.f:241:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel234_f.f:250:29: fval = rsq24 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel234_f.f:259:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel234_f.f:268:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel234_f.f:277:29: fval = rsq34 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel234_f.f:286:29: fval = rsq42 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel234_f.f:295:29: fval = rsq43 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel234_f.f:304:29: fval = rsq44 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel234_f.f:315:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel234_f.f:705:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel234_f.f:714:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel234_f.f:723:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel234_f.f:732:29: fval = rsq24 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel234_f.f:741:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel234_f.f:750:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel234_f.f:759:29: fval = rsq34 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel234_f.f:768:29: fval = rsq42 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel234_f.f:777:29: fval = rsq43 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel234_f.f:786:29: fval = rsq44 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel234_f.f:797:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel234_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:550:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:546:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:533:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:530:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:548:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:547:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:545:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:551:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:549:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:554:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel311_f.lo nb_kernel311_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel311_f.f -fPIC -o .libs/nb_kernel311_f.o nb_kernel311_f.f:166:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel311_f.f:175:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel311_f.f:184:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel311_f.f:201:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel311_f.f:233:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel311_f.f:259:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel311_f.f:448:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel311_f.f:457:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel311_f.f:466:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel311_f.f:483:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel311_f.f:502:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel311_f.f:516:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel311_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:346:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:333:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:342:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:329:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:326:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:344:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:343:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:341:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:332:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:347:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:345:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:350:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel302_f.lo nb_kernel302_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel302_f.f -fPIC -o .libs/nb_kernel302_f.o nb_kernel302_f.f:197:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel302_f.f:206:29: fval = rsq12 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel302_f.f:215:29: fval = rsq13 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel302_f.f:224:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel302_f.f:233:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel302_f.f:242:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel302_f.f:251:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel302_f.f:260:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel302_f.f:269:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel302_f.f:281:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:308:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:335:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:362:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:389:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:416:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:443:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:470:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:497:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:716:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel302_f.f:725:29: fval = rsq12 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel302_f.f:734:29: fval = rsq13 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel302_f.f:743:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel302_f.f:752:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel302_f.f:761:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel302_f.f:770:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel302_f.f:779:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel302_f.f:788:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel302_f.f:800:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:815:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:830:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:845:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:860:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:875:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:890:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:905:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:920:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:583:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:570:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:579:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:566:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:563:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:581:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:580:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:578:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:569:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:584:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:582:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:573:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:572:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:574:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:575:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:587:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel313_f.lo nb_kernel313_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel313_f.f -fPIC -o .libs/nb_kernel313_f.o nb_kernel313_f.f:179:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel313_f.f:188:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel313_f.f:197:29: fval = rsq41 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel313_f.f:227:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel313_f.f:253:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel313_f.f:280:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel313_f.f:482:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel313_f.f:491:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel313_f.f:500:29: fval = rsq41 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel313_f.f:520:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel313_f.f:534:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel313_f.f:549:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel313_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:370:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:357:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:366:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:353:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:350:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:368:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:367:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:365:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:356:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:371:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:369:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:374:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel320_f.lo nb_kernel320_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel320_f.f -fPIC -o .libs/nb_kernel320_f.o nb_kernel320_f.f:138:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel320_f.f:155:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel320_f.f:322:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel320_f.f:339:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel320_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:242:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:229:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:238:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:225:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:222:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:240:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:239:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:237:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:228:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:243:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:241:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:246:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel304_f.lo nb_kernel304_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel304_f.f -fPIC -o .libs/nb_kernel304_f.o nb_kernel304_f.f:197:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel304_f.f:206:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel304_f.f:215:29: fval = rsq24 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel304_f.f:224:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel304_f.f:233:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel304_f.f:242:29: fval = rsq34 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel304_f.f:251:29: fval = rsq42 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel304_f.f:260:29: fval = rsq43 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel304_f.f:269:29: fval = rsq44 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel304_f.f:281:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:308:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:335:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:362:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:389:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:416:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:443:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:470:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:497:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:716:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel304_f.f:725:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel304_f.f:734:29: fval = rsq24 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel304_f.f:743:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel304_f.f:752:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel304_f.f:761:29: fval = rsq34 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel304_f.f:770:29: fval = rsq42 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel304_f.f:779:29: fval = rsq43 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel304_f.f:788:29: fval = rsq44 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel304_f.f:800:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:815:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:830:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:845:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:860:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:875:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:890:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:905:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:920:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:583:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:570:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:579:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:566:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:563:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:581:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:580:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:578:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:569:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:584:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:582:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:573:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:572:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:574:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:575:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:587:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel321_f.lo nb_kernel321_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel321_f.f -fPIC -o .libs/nb_kernel321_f.o nb_kernel321_f.f:166:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel321_f.f:175:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel321_f.f:184:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel321_f.f:202:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel321_f.f:235:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel321_f.f:261:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel321_f.f:450:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel321_f.f:459:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel321_f.f:468:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel321_f.f:486:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel321_f.f:506:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel321_f.f:520:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel321_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:348:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:335:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:344:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:331:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:328:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:346:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:345:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:343:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:334:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:349:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:347:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:352:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel312_f.lo nb_kernel312_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel312_f.f -fPIC -o .libs/nb_kernel312_f.o nb_kernel312_f.f:207:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel312_f.f:216:29: fval = rsq12 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel312_f.f:225:29: fval = rsq13 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel312_f.f:234:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel312_f.f:243:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel312_f.f:252:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel312_f.f:261:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel312_f.f:270:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel312_f.f:279:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel312_f.f:292:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:324:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:351:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:378:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:405:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:432:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:459:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:486:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:513:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:743:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel312_f.f:752:29: fval = rsq12 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel312_f.f:761:29: fval = rsq13 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel312_f.f:770:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel312_f.f:779:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel312_f.f:788:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel312_f.f:797:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel312_f.f:806:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel312_f.f:815:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel312_f.f:828:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:847:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:862:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:877:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:892:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:907:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:922:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:937:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:952:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:600:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:587:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:596:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:583:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:580:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:598:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:597:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:595:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:586:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:601:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:599:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:604:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel330_f.lo nb_kernel330_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel330_f.f -fPIC -o .libs/nb_kernel330_f.o nb_kernel330_f.f:137:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel330_f.f:152:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel330_f.f:332:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel330_f.f:347:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel330_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:254:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:241:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:250:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:237:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:234:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:252:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:251:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:249:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:240:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:255:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:253:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:258:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel314_f.lo nb_kernel314_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel314_f.f -fPIC -o .libs/nb_kernel314_f.o nb_kernel314_f.f:224:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel314_f.f:233:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel314_f.f:242:29: fval = rsq24 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel314_f.f:251:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel314_f.f:260:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel314_f.f:269:29: fval = rsq34 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel314_f.f:278:29: fval = rsq42 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel314_f.f:287:29: fval = rsq43 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel314_f.f:296:29: fval = rsq44 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel314_f.f:322:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:349:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:376:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:403:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:430:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:457:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:484:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:511:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:538:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:785:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel314_f.f:794:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel314_f.f:803:29: fval = rsq24 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel314_f.f:812:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel314_f.f:821:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel314_f.f:830:29: fval = rsq34 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel314_f.f:839:29: fval = rsq42 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel314_f.f:848:29: fval = rsq43 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel314_f.f:857:29: fval = rsq44 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel314_f.f:873:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:888:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:903:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:918:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:933:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:948:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:963:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:978:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:993:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:628:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:615:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:624:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:611:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:608:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:626:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:625:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:623:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:614:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:629:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:627:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:632:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel323_f.lo nb_kernel323_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel323_f.f -fPIC -o .libs/nb_kernel323_f.o nb_kernel323_f.f:178:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel323_f.f:187:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel323_f.f:196:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel323_f.f:205:29: fval = rsq41 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel323_f.f:238:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel323_f.f:264:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel323_f.f:291:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel323_f.f:492:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel323_f.f:501:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel323_f.f:510:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel323_f.f:519:29: fval = rsq41 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel323_f.f:542:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel323_f.f:556:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel323_f.f:571:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel323_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:381:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:368:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:377:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:364:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:361:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:379:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:378:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:376:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:367:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:382:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:380:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:385:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel331_f.lo nb_kernel331_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel331_f.f -fPIC -o .libs/nb_kernel331_f.o nb_kernel331_f.f:165:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel331_f.f:174:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel331_f.f:183:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel331_f.f:199:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel331_f.f:247:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel331_f.f:273:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel331_f.f:460:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel331_f.f:469:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel331_f.f:478:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel331_f.f:494:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel331_f.f:526:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel331_f.f:540:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel331_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:360:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:347:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:356:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:343:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:340:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:358:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:357:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:355:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:346:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:361:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:359:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:364:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel322_f.lo nb_kernel322_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel322_f.f -fPIC -o .libs/nb_kernel322_f.o nb_kernel322_f.f:208:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel322_f.f:217:29: fval = rsq12 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel322_f.f:226:29: fval = rsq13 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel322_f.f:235:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel322_f.f:244:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel322_f.f:253:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel322_f.f:262:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel322_f.f:271:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel322_f.f:280:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel322_f.f:293:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:326:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:353:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:380:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:407:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:434:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:461:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:488:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:515:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:746:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel322_f.f:755:29: fval = rsq12 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel322_f.f:764:29: fval = rsq13 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel322_f.f:773:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel322_f.f:782:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel322_f.f:791:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel322_f.f:800:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel322_f.f:809:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel322_f.f:818:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel322_f.f:831:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:851:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:866:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:881:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:896:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:911:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:926:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:941:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:956:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:602:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:589:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:598:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:585:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:582:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:600:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:599:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:597:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:588:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:603:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:601:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:606:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel400_f.lo nb_kernel400_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel400_f.f -fPIC -o .libs/nb_kernel400_f.o nb_kernel400_f.f:133:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel400_f.f:149:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel400_f.f:306:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel400_f.f:321:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel400_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:233:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:220:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:229:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:216:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:213:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:219:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:234:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:232:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:223:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:226:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:222:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:224:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:227:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:225:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:237:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel410_f.lo nb_kernel410_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel410_f.f -fPIC -o .libs/nb_kernel410_f.o nb_kernel410_f.f:142:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel410_f.f:162:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel410_f.f:334:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel410_f.f:353:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel410_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:252:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:239:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:248:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:235:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:232:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:238:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:253:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:251:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:245:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:246:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:256:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel333_f.lo nb_kernel333_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel333_f.f -fPIC -o .libs/nb_kernel333_f.o nb_kernel333_f.f:177:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel333_f.f:186:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel333_f.f:195:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel333_f.f:204:29: fval = rsq41 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel333_f.f:218:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel333_f.f:257:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel333_f.f:283:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel333_f.f:310:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel333_f.f:509:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel333_f.f:518:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel333_f.f:527:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel333_f.f:536:29: fval = rsq41 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel333_f.f:550:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel333_f.f:575:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel333_f.f:589:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel333_f.f:604:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel333_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:400:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:387:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:396:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:383:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:380:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:398:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:397:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:395:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:386:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:401:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:399:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:404:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel324_f.lo nb_kernel324_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel324_f.f -fPIC -o .libs/nb_kernel324_f.o nb_kernel324_f.f:224:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel324_f.f:233:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel324_f.f:242:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel324_f.f:251:29: fval = rsq24 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel324_f.f:260:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel324_f.f:269:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel324_f.f:278:29: fval = rsq34 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel324_f.f:287:29: fval = rsq42 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel324_f.f:296:29: fval = rsq43 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel324_f.f:305:29: fval = rsq44 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel324_f.f:333:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:360:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:387:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:414:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:441:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:468:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:495:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:522:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:549:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:796:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel324_f.f:805:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel324_f.f:814:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel324_f.f:823:29: fval = rsq24 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel324_f.f:832:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel324_f.f:841:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel324_f.f:850:29: fval = rsq34 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel324_f.f:859:29: fval = rsq42 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel324_f.f:868:29: fval = rsq43 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel324_f.f:877:29: fval = rsq44 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel324_f.f:895:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:910:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:925:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:940:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:955:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:970:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:985:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:1000:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:1015:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:639:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:626:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:635:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:622:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:619:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:637:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:636:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:634:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:625:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:640:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:638:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:643:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel_f77sync.lo ../../../../../src/gmxlib/nonbonded/nb_kernel/nb_kernel_f77sync.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel/nb_kernel_f77sync.c -fPIC -DPIC -o .libs/nb_kernel_f77sync.o make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel420_f.lo nb_kernel420_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel420_f.f -fPIC -o .libs/nb_kernel420_f.o nb_kernel420_f.f:142:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel420_f.f:163:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel420_f.f:336:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel420_f.f:356:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel420_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:254:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:241:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:250:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:237:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:234:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:240:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:255:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:253:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:247:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:248:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:258:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel332_f.lo nb_kernel332_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel332_f.f -fPIC -o .libs/nb_kernel332_f.o nb_kernel332_f.f:206:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel332_f.f:215:29: fval = rsq12 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel332_f.f:224:29: fval = rsq13 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel332_f.f:233:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel332_f.f:242:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel332_f.f:251:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel332_f.f:260:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel332_f.f:269:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel332_f.f:278:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel332_f.f:290:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:338:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:365:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:392:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:419:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:446:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:473:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:500:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:527:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:755:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel332_f.f:764:29: fval = rsq12 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel332_f.f:773:29: fval = rsq13 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel332_f.f:782:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel332_f.f:791:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel332_f.f:800:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel332_f.f:809:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel332_f.f:818:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel332_f.f:827:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel332_f.f:839:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:871:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:886:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:901:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:916:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:931:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:946:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:961:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:976:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:614:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:601:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:610:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:597:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:594:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:612:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:611:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:609:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:600:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:615:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:613:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:618:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel430_f.lo nb_kernel430_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel430_f.f -fPIC -o .libs/nb_kernel430_f.o nb_kernel430_f.f:141:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel430_f.f:160:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel430_f.f:179:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel430_f.f:351:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel430_f.f:369:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel430_f.f:383:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel430_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel430_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel430_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel430_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel430_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel430_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel430_f.f:271:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel430_f.f:258:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel430_f.f:267:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel430_f.f:254:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel430_f.f:251:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel430_f.f:257:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel430_f.f:272:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel430_f.f:270:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel430_f.f:275:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel334_f.lo nb_kernel334_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel334_f.f -fPIC -o .libs/nb_kernel334_f.o nb_kernel334_f.f:222:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel334_f.f:231:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel334_f.f:240:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel334_f.f:249:29: fval = rsq24 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel334_f.f:258:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel334_f.f:267:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel334_f.f:276:29: fval = rsq34 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel334_f.f:285:29: fval = rsq42 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel334_f.f:294:29: fval = rsq43 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel334_f.f:303:29: fval = rsq44 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel334_f.f:314:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:352:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:379:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:406:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:433:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:460:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:487:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:514:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:541:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:568:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:812:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel334_f.f:821:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel334_f.f:830:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel334_f.f:839:29: fval = rsq24 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel334_f.f:848:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel334_f.f:857:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel334_f.f:866:29: fval = rsq34 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel334_f.f:875:29: fval = rsq42 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel334_f.f:884:29: fval = rsq43 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel334_f.f:893:29: fval = rsq44 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel334_f.f:904:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:928:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:943:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:958:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:973:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:988:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:1003:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:1018:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:1033:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:1048:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:658:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:645:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:654:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:641:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:638:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:656:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:655:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:653:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:644:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:659:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:657:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:662:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o libnb_kernel.la nb_kernel.lo nb_kernel010_f.lo nb_kernel020_f.lo nb_kernel030_f.lo nb_kernel100_f.lo nb_kernel101_f.lo nb_kernel102_f.lo nb_kernel103_f.lo nb_kernel104_f.lo nb_kernel110_f.lo nb_kernel111_f.lo nb_kernel112_f.lo nb_kernel113_f.lo nb_kernel114_f.lo nb_kernel120_f.lo nb_kernel121_f.lo nb_kernel122_f.lo nb_kernel123_f.lo nb_kernel124_f.lo nb_kernel130_f.lo nb_kernel131_f.lo nb_kernel132_f.lo nb_kernel133_f.lo nb_kernel134_f.lo nb_kernel200_f.lo nb_kernel201_f.lo nb_kernel202_f.lo nb_kernel203_f.lo nb_kernel204_f.lo nb_kernel210_f.lo nb_kernel211_f.lo nb_kernel212_f.lo nb_kernel213_f.lo nb_kernel214_f.lo nb_kernel220_f.lo nb_kernel221_f.lo nb_kernel222_f.lo nb_kernel223_f.lo nb_kernel224_f.lo nb_kernel230_f.lo nb_kernel231_f.lo nb_kernel232_f.lo nb_kernel233_f.lo nb_kernel234_f.lo nb_kernel300_f.lo nb_kernel301_f.lo nb_kernel302_f.lo nb_kernel303_f.lo nb_kernel304_f.lo nb_kernel310_f.lo nb_kernel311_f.lo nb_kernel312_f.lo nb_kernel313_f.lo nb_kernel314_f.lo nb_kernel320_f.lo nb_kernel321_f.lo nb_kernel322_f.lo nb_kernel323_f.lo nb_kernel324_f.lo nb_kernel330_f.lo nb_kernel331_f.lo nb_kernel332_f.lo nb_kernel333_f.lo nb_kernel334_f.lo nb_kernel400_f.lo nb_kernel410_f.lo nb_kernel420_f.lo nb_kernel430_f.lo nb_kernel_f77sync.lo -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath ar cru .libs/libnb_kernel.a .libs/nb_kernel.o .libs/nb_kernel010_f.o .libs/nb_kernel020_f.o .libs/nb_kernel030_f.o .libs/nb_kernel100_f.o .libs/nb_kernel101_f.o .libs/nb_kernel102_f.o .libs/nb_kernel103_f.o .libs/nb_kernel104_f.o .libs/nb_kernel110_f.o .libs/nb_kernel111_f.o .libs/nb_kernel112_f.o .libs/nb_kernel113_f.o .libs/nb_kernel114_f.o .libs/nb_kernel120_f.o .libs/nb_kernel121_f.o .libs/nb_kernel122_f.o .libs/nb_kernel123_f.o .libs/nb_kernel124_f.o .libs/nb_kernel130_f.o .libs/nb_kernel131_f.o .libs/nb_kernel132_f.o .libs/nb_kernel133_f.o .libs/nb_kernel134_f.o .libs/nb_kernel200_f.o .libs/nb_kernel201_f.o .libs/nb_kernel202_f.o .libs/nb_kernel203_f.o .libs/nb_kernel204_f.o .libs/nb_kernel210_f.o .libs/nb_kernel211_f.o .libs/nb_kernel212_f.o .libs/nb_kernel213_f.o .libs/nb_kernel214_f.o .libs/nb_kernel220_f.o .libs/nb_kernel221_f.o .libs/nb_kernel222_f.o .libs/nb_kernel223_f.o .libs/nb_kernel224_f.o .libs/nb_kernel230_f.o .libs/nb_kernel231_f.o .libs/nb_kernel232_f.o .libs/nb_kernel233_f.o .libs/nb_kernel234_f.o .libs/nb_kernel300_f.o .libs/nb_kernel301_f.o .libs/nb_kernel302_f.o .libs/nb_kernel303_f.o .libs/nb_kernel304_f.o .libs/nb_kernel310_f.o .libs/nb_kernel311_f.o .libs/nb_kernel312_f.o .libs/nb_kernel313_f.o .libs/nb_kernel314_f.o .libs/nb_kernel320_f.o .libs/nb_kernel321_f.o .libs/nb_kernel322_f.o .libs/nb_kernel323_f.o .libs/nb_kernel324_f.o .libs/nb_kernel330_f.o .libs/nb_kernel331_f.o .libs/nb_kernel332_f.o .libs/nb_kernel333_f.o .libs/nb_kernel334_f.o .libs/nb_kernel400_f.o .libs/nb_kernel410_f.o .libs/nb_kernel420_f.o .libs/nb_kernel430_f.o .libs/nb_kernel_f77sync.o ranlib .libs/libnb_kernel.a creating libnb_kernel.la (cd .libs && rm -f libnb_kernel.la && ln -s ../libnb_kernel.la libnb_kernel.la) make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_generic.lo ../../../../src/gmxlib/nonbonded/nb_generic.c mkdir .libs x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/nonbonded/nb_generic.c -fPIC -DPIC -o .libs/nb_generic.o ../../../../src/gmxlib/nonbonded/nb_generic.c: In function 'gmx_nb_generic_kernel': ../../../../src/gmxlib/nonbonded/nb_generic.c:82:16: warning: unused variable 'shift' [-Wunused-variable] int * shift; ^~~~~ ../../../../src/gmxlib/nonbonded/nb_generic.c:62:25: warning: unused variable 'gbtabscale' [-Wunused-variable] real facel,gbtabscale; ^~~~~~~~~~ ../../../../src/gmxlib/nonbonded/nb_generic.c:61:19: warning: unused variable 'nri' [-Wunused-variable] int nri,ntype,table_nelements,icoul,ivdw; ^~~ In file included from ../../../../src/gmxlib/nonbonded/nb_generic.c:43: At top level: ../../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../../include/vec.h:121, from ../../../../src/gmxlib/nonbonded/nb_generic.c:43: ../../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_free_energy.lo ../../../../src/gmxlib/nonbonded/nb_free_energy.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/nonbonded/nb_free_energy.c -fPIC -DPIC -o .libs/nb_free_energy.o ../../../../src/gmxlib/nonbonded/nb_free_energy.c: In function 'gmx_nb_free_energy_kernel': ../../../../src/gmxlib/nonbonded/nb_free_energy.c:100:25: warning: unused variable 'H' [-Wunused-variable] real Y,F,G,H,Fp,Geps,Heps2,eps,eps2,VV,FF; ^ ../../../../src/gmxlib/nonbonded/nb_free_energy.c:100:23: warning: unused variable 'G' [-Wunused-variable] real Y,F,G,H,Fp,Geps,Heps2,eps,eps2,VV,FF; ^ ../../../../src/gmxlib/nonbonded/nb_free_energy.c:89:19: warning: unused variable 'rinvsix' [-Wunused-variable] real rinvsix; ^~~~~~~ ../../../../src/gmxlib/nonbonded/nb_free_energy.c:86:27: warning: unused variable 'vcoul' [-Wunused-variable] real qqA,qqB,vcoul,vctot,krsq; ^~~~~ In file included from ../../../../src/gmxlib/nonbonded/nb_free_energy.c:42: At top level: ../../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../../include/vec.h:121, from ../../../../src/gmxlib/nonbonded/nb_free_energy.c:42: ../../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nonbonded.lo ../../../../src/gmxlib/nonbonded/nonbonded.c mkdir .libs mkdir: cannot create directory '.libs': File exists x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/nonbonded/nonbonded.c -fPIC -DPIC -o .libs/nonbonded.o ../../../../src/gmxlib/nonbonded/nonbonded.c: In function 'do_nonbonded': ../../../../src/gmxlib/nonbonded/nonbonded.c:283:18: warning: unused variable 'fp' [-Wunused-variable] FILE * fp; ^~ ../../../../src/gmxlib/nonbonded/nonbonded.c:281:18: warning: unused variable 'bWater' [-Wunused-variable] bool bWater; ^~~~~~ ../../../../src/gmxlib/nonbonded/nonbonded.c:279:43: warning: unused variable 'sz' [-Wunused-variable] int n,n0,n1,i,i0,i1,nrnb_ind,sz; ^~ ../../../../src/gmxlib/nonbonded/nonbonded.c: In function 'do_listed_vdw_q': ../../../../src/gmxlib/nonbonded/nonbonded.c:547:15: warning: unused variable 'tmplist' [-Wunused-variable] t_nblist tmplist; ^~~~~~~ ../../../../src/gmxlib/nonbonded/nonbonded.c:538:25: warning: unused variable 'i2' [-Wunused-variable] int i0=0,i1=1,i2=2; ^~ In file included from ../../../../src/gmxlib/nonbonded/nonbonded.c:53: At top level: ../../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../../src/gmxlib/nonbonded/nonbonded.c:50: ../../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../../include/vec.h:121, from ../../../../src/gmxlib/nonbonded/nonbonded.c:50: ../../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded' /bin/sh ../../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o libnonbonded.la nonbonded.lo nb_free_energy.lo nb_generic.lo nb_kernel_x86_64_sse2/libnb_kernel_x86_64_sse2.la nb_kernel/libnb_kernel.la -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath rm -fr .libs/libnonbonded.lax mkdir .libs/libnonbonded.lax rm -fr .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a mkdir .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a (cd .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a && ar x /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/.libs/libnb_kernel_x86_64_sse2.a) rm -fr .libs/libnonbonded.lax/libnb_kernel.a mkdir .libs/libnonbonded.lax/libnb_kernel.a (cd .libs/libnonbonded.lax/libnb_kernel.a && ar x /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel/.libs/libnb_kernel.a) ar cru .libs/libnonbonded.a .libs/nonbonded.o .libs/nb_free_energy.o .libs/nb_generic.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel_x86_64_sse2_test.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel430_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel410_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel400_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel334_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel333_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel332_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel331_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel330_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel314_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel313_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel312_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel311_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel310_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel304_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel303_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel302_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel301_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel300_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel234_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel233_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel232_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel231_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel230_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel214_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel213_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel212_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel211_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel210_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel204_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel203_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel202_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel201_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel200_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel134_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel133_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel132_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel131_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel130_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel114_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel113_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel112_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel111_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel110_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel104_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel103_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel102_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel101_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel100_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel030_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel010_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel_f77sync.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel430_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel420_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel410_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel400_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel334_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel333_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel332_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel331_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel330_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel324_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel323_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel322_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel321_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel320_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel314_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel313_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel312_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel311_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel310_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel304_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel303_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel302_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel301_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel300_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel234_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel233_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel232_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel231_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel230_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel224_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel223_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel222_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel221_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel220_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel214_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel213_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel212_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel211_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel210_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel204_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel203_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel202_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel201_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel200_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel134_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel133_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel132_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel131_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel130_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel124_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel123_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel122_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel121_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel120_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel114_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel113_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel112_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel111_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel110_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel104_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel103_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel102_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel101_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel100_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel030_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel020_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel010_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel.o ranlib .libs/libnonbonded.a rm -fr .libs/libnonbonded.lax creating libnonbonded.la (cd .libs && rm -f libnonbonded.la && ln -s ../libnonbonded.la libnonbonded.la) make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded' Making all in gmx_blas make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o drot.lo ../../../../src/gmxlib/gmx_blas/drot.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/drot.c -fPIC -DPIC -o .libs/drot.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dasum.lo ../../../../src/gmxlib/gmx_blas/dasum.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dasum.c -fPIC -DPIC -o .libs/dasum.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dcopy.lo ../../../../src/gmxlib/gmx_blas/dcopy.c mkdir .libs x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dcopy.c -fPIC -DPIC -o .libs/dcopy.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dswap.lo ../../../../src/gmxlib/gmx_blas/dswap.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dswap.c -fPIC -DPIC -o .libs/dswap.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dger.lo ../../../../src/gmxlib/gmx_blas/dger.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dger.c -fPIC -DPIC -o .libs/dger.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dsyr2.lo ../../../../src/gmxlib/gmx_blas/dsyr2.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dsyr2.c -fPIC -DPIC -o .libs/dsyr2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dgemm.lo ../../../../src/gmxlib/gmx_blas/dgemm.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dgemm.c -fPIC -DPIC -o .libs/dgemm.o ../../../../src/gmxlib/gmx_blas/dgemm.c: In function 'dgemm_': ../../../../src/gmxlib/gmx_blas/dgemm.c:27:19: warning: variable 'nrowb' set but not used [-Wunused-but-set-variable] int nrowa,ncola,nrowb; ^~~~~ ../../../../src/gmxlib/gmx_blas/dgemm.c:27:13: warning: variable 'ncola' set but not used [-Wunused-but-set-variable] int nrowa,ncola,nrowb; ^~~~~ ../../../../src/gmxlib/gmx_blas/dgemm.c:27:7: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable] int nrowa,ncola,nrowb; ^~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ddot.lo ../../../../src/gmxlib/gmx_blas/ddot.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/ddot.c -fPIC -DPIC -o .libs/ddot.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dtrmm.lo ../../../../src/gmxlib/gmx_blas/dtrmm.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dtrmm.c -fPIC -DPIC -o .libs/dtrmm.o ../../../../src/gmxlib/gmx_blas/dtrmm.c: In function 'dtrmm_': ../../../../src/gmxlib/gmx_blas/dtrmm.c:32:9: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable] int nrowa; ^~~~~ ../../../../src/gmxlib/gmx_blas/dtrmm.c:29:20: warning: variable 'info' set but not used [-Wunused-but-set-variable] int i__, j, k, info; ^~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o daxpy.lo ../../../../src/gmxlib/gmx_blas/daxpy.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/daxpy.c -fPIC -DPIC -o .libs/daxpy.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dnrm2.lo ../../../../src/gmxlib/gmx_blas/dnrm2.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dnrm2.c -fPIC -DPIC -o .libs/dnrm2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dscal.lo ../../../../src/gmxlib/gmx_blas/dscal.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dscal.c -fPIC -DPIC -o .libs/dscal.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dgemv.lo ../../../../src/gmxlib/gmx_blas/dgemv.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dgemv.c -fPIC -DPIC -o .libs/dgemv.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dsymv.lo ../../../../src/gmxlib/gmx_blas/dsymv.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dsymv.c -fPIC -DPIC -o .libs/dsymv.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o idamax.lo ../../../../src/gmxlib/gmx_blas/idamax.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/idamax.c -fPIC -DPIC -o .libs/idamax.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dtrsm.lo ../../../../src/gmxlib/gmx_blas/dtrsm.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dtrsm.c -fPIC -DPIC -o .libs/dtrsm.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sasum.lo ../../../../src/gmxlib/gmx_blas/sasum.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/sasum.c -fPIC -DPIC -o .libs/sasum.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o scopy.lo ../../../../src/gmxlib/gmx_blas/scopy.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/scopy.c -fPIC -DPIC -o .libs/scopy.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dtrmv.lo ../../../../src/gmxlib/gmx_blas/dtrmv.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dtrmv.c -fPIC -DPIC -o .libs/dtrmv.o ../../../../src/gmxlib/gmx_blas/dtrmv.c: In function 'dtrmv_': ../../../../src/gmxlib/gmx_blas/dtrmv.c:18:29: warning: variable 'info' set but not used [-Wunused-but-set-variable] int i__, j, ix, jx, kx, info; ^~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dsyr2k.lo ../../../../src/gmxlib/gmx_blas/dsyr2k.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dsyr2k.c -fPIC -DPIC -o .libs/dsyr2k.o ../../../../src/gmxlib/gmx_blas/dsyr2k.c: In function 'dsyr2k_': ../../../../src/gmxlib/gmx_blas/dsyr2k.c:23:7: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable] int nrowa; ^~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sgemm.lo ../../../../src/gmxlib/gmx_blas/sgemm.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/sgemm.c -fPIC -DPIC -o .libs/sgemm.o ../../../../src/gmxlib/gmx_blas/sgemm.c: In function 'sgemm_': ../../../../src/gmxlib/gmx_blas/sgemm.c:26:19: warning: variable 'nrowb' set but not used [-Wunused-but-set-variable] int nrowa,ncola,nrowb; ^~~~~ ../../../../src/gmxlib/gmx_blas/sgemm.c:26:13: warning: variable 'ncola' set but not used [-Wunused-but-set-variable] int nrowa,ncola,nrowb; ^~~~~ ../../../../src/gmxlib/gmx_blas/sgemm.c:26:7: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable] int nrowa,ncola,nrowb; ^~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o srot.lo ../../../../src/gmxlib/gmx_blas/srot.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/srot.c -fPIC -DPIC -o .libs/srot.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sger.lo ../../../../src/gmxlib/gmx_blas/sger.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/sger.c -fPIC -DPIC -o .libs/sger.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sswap.lo ../../../../src/gmxlib/gmx_blas/sswap.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/sswap.c -fPIC -DPIC -o .libs/sswap.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ssyr2.lo ../../../../src/gmxlib/gmx_blas/ssyr2.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/ssyr2.c -fPIC -DPIC -o .libs/ssyr2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o saxpy.lo ../../../../src/gmxlib/gmx_blas/saxpy.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/saxpy.c -fPIC -DPIC -o .libs/saxpy.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sdot.lo ../../../../src/gmxlib/gmx_blas/sdot.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/sdot.c -fPIC -DPIC -o .libs/sdot.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o snrm2.lo ../../../../src/gmxlib/gmx_blas/snrm2.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/snrm2.c -fPIC -DPIC -o .libs/snrm2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sscal.lo ../../../../src/gmxlib/gmx_blas/sscal.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/sscal.c -fPIC -DPIC -o .libs/sscal.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o strmm.lo ../../../../src/gmxlib/gmx_blas/strmm.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/strmm.c -fPIC -DPIC -o .libs/strmm.o ../../../../src/gmxlib/gmx_blas/strmm.c: In function 'strmm_': ../../../../src/gmxlib/gmx_blas/strmm.c:31:9: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable] int nrowa; ^~~~~ ../../../../src/gmxlib/gmx_blas/strmm.c:28:20: warning: variable 'info' set but not used [-Wunused-but-set-variable] int i__, j, k, info; ^~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sgemv.lo ../../../../src/gmxlib/gmx_blas/sgemv.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/sgemv.c -fPIC -DPIC -o .libs/sgemv.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o strsm.lo ../../../../src/gmxlib/gmx_blas/strsm.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/strsm.c -fPIC -DPIC -o .libs/strsm.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o isamax.lo ../../../../src/gmxlib/gmx_blas/isamax.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/isamax.c -fPIC -DPIC -o .libs/isamax.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ssymv.lo ../../../../src/gmxlib/gmx_blas/ssymv.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/ssymv.c -fPIC -DPIC -o .libs/ssymv.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o strmv.lo ../../../../src/gmxlib/gmx_blas/strmv.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/strmv.c -fPIC -DPIC -o .libs/strmv.o ../../../../src/gmxlib/gmx_blas/strmv.c: In function 'strmv_': ../../../../src/gmxlib/gmx_blas/strmv.c:18:29: warning: variable 'info' set but not used [-Wunused-but-set-variable] int i__, j, ix, jx, kx, info; ^~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ssyr2k.lo ../../../../src/gmxlib/gmx_blas/ssyr2k.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/ssyr2k.c -fPIC -DPIC -o .libs/ssyr2k.o ../../../../src/gmxlib/gmx_blas/ssyr2k.c: In function 'ssyr2k_': ../../../../src/gmxlib/gmx_blas/ssyr2k.c:22:7: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable] int nrowa; ^~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o libblas.la dasum.lo dcopy.lo dgemm.lo dger.lo drot.lo dswap.lo dsyr2.lo dtrmm.lo dtrsm.lo daxpy.lo ddot.lo dgemv.lo dnrm2.lo dscal.lo dsymv.lo dsyr2k.lo dtrmv.lo idamax.lo sasum.lo scopy.lo sgemm.lo sger.lo srot.lo sswap.lo ssyr2.lo strmm.lo strsm.lo saxpy.lo sdot.lo sgemv.lo snrm2.lo sscal.lo ssymv.lo ssyr2k.lo strmv.lo isamax.lo -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath ar cru .libs/libblas.a .libs/dasum.o .libs/dcopy.o .libs/dgemm.o .libs/dger.o .libs/drot.o .libs/dswap.o .libs/dsyr2.o .libs/dtrmm.o .libs/dtrsm.o .libs/daxpy.o .libs/ddot.o .libs/dgemv.o .libs/dnrm2.o .libs/dscal.o .libs/dsymv.o .libs/dsyr2k.o .libs/dtrmv.o .libs/idamax.o .libs/sasum.o .libs/scopy.o .libs/sgemm.o .libs/sger.o .libs/srot.o .libs/sswap.o .libs/ssyr2.o .libs/strmm.o .libs/strsm.o .libs/saxpy.o .libs/sdot.o .libs/sgemv.o .libs/snrm2.o .libs/sscal.o .libs/ssymv.o .libs/ssyr2k.o .libs/strmv.o .libs/isamax.o ranlib .libs/libblas.a creating libblas.la (cd .libs && rm -f libblas.la && ln -s ../libblas.la libblas.la) make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' Making all in gmx_lapack make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlamrg.lo ../../../../src/gmxlib/gmx_lapack/dlamrg.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlamrg.c -fPIC -DPIC -o .libs/dlamrg.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dgetf2.lo ../../../../src/gmxlib/gmx_lapack/dgetf2.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgetf2.c -fPIC -DPIC -o .libs/dgetf2.o ../../../../src/gmxlib/gmx_lapack/dgetf2.c: In function 'dgetf2_': ../../../../src/gmxlib/gmx_lapack/dgetf2.c:17:10: warning: variable 'one' set but not used [-Wunused-but-set-variable] double one,minusone; ^~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlarnv.lo ../../../../src/gmxlib/gmx_lapack/dlarnv.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlarnv.c -fPIC -DPIC -o .libs/dlarnv.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasq6.lo ../../../../src/gmxlib/gmx_lapack/dlasq6.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasq6.c -fPIC -DPIC -o .libs/dlasq6.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dorgl2.lo ../../../../src/gmxlib/gmx_lapack/dorgl2.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dorgl2.c -fPIC -DPIC -o .libs/dorgl2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasd0.lo ../../../../src/gmxlib/gmx_lapack/dlasd0.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasd0.c -fPIC -DPIC -o .libs/dlasd0.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasda.lo ../../../../src/gmxlib/gmx_lapack/dlasda.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasda.c -fPIC -DPIC -o .libs/dlasda.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dbdsdc.lo ../../../../src/gmxlib/gmx_lapack/dbdsdc.c mkdir .libs x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dbdsdc.c -fPIC -DPIC -o .libs/dbdsdc.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dormqr.lo ../../../../src/gmxlib/gmx_lapack/dormqr.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dormqr.c -fPIC -DPIC -o 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x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasd1.lo ../../../../src/gmxlib/gmx_lapack/dlasd1.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasd1.c -fPIC -DPIC -o .libs/dlasd1.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlange.lo ../../../../src/gmxlib/gmx_lapack/dlange.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlange.c -fPIC -DPIC -o .libs/dlange.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dtrtri.lo ../../../../src/gmxlib/gmx_lapack/dtrtri.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dtrtri.c -fPIC -DPIC -o 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x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasdq.lo ../../../../src/gmxlib/gmx_lapack/dlasdq.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasdq.c -fPIC -DPIC -o .libs/dlasdq.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dorglq.lo ../../../../src/gmxlib/gmx_lapack/dorglq.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dorglq.c -fPIC -DPIC -o .libs/dorglq.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlanst.lo ../../../../src/gmxlib/gmx_lapack/dlanst.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlanst.c -fPIC -DPIC -o 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x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasr.lo ../../../../src/gmxlib/gmx_lapack/dlasr.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasr.c -fPIC -DPIC -o .libs/dlasr.o ../../../../src/gmxlib/gmx_lapack/dlasr.c: In function 'dlasr_': ../../../../src/gmxlib/gmx_lapack/dlasr.c:21:17: warning: variable 'info' set but not used [-Wunused-but-set-variable] int i__, j, info; ^~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasdt.lo ../../../../src/gmxlib/gmx_lapack/dlasdt.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasdt.c -fPIC -DPIC -o .libs/dlasdt.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dbdsqr.lo ../../../../src/gmxlib/gmx_lapack/dbdsqr.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dbdsqr.c -fPIC -DPIC -o .libs/dbdsqr.o ../../../../src/gmxlib/gmx_lapack/dbdsqr.c: In function 'dbdsqr_': ../../../../src/gmxlib/gmx_lapack/dbdsqr.c:61:12: warning: unused variable 'ftmp' [-Wunused-variable] double ftmp; ^~~~ ../../../../src/gmxlib/gmx_lapack/dbdsqr.c:59:12: warning: variable 'sminlo' set but not used [-Wunused-but-set-variable] double sminlo, tolmul; ^~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasrt.lo 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../../../../src/gmxlib/gmx_lapack/dlas2.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlas2.c -fPIC -DPIC -o .libs/dlas2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dorg2r.lo ../../../../src/gmxlib/gmx_lapack/dorg2r.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dorg2r.c -fPIC -DPIC -o .libs/dorg2r.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dormlq.lo ../../../../src/gmxlib/gmx_lapack/dormlq.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dormlq.c -fPIC -DPIC -o .libs/dormlq.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dsytd2.lo ../../../../src/gmxlib/gmx_lapack/dsytd2.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dsytd2.c -fPIC -DPIC -o .libs/dsytd2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasq4.lo ../../../../src/gmxlib/gmx_lapack/dlasq4.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasq4.c -fPIC -DPIC -o .libs/dlasq4.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasd7.lo ../../../../src/gmxlib/gmx_lapack/dlasd7.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasd7.c -fPIC -DPIC -o .libs/dlasd7.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlagts.lo ../../../../src/gmxlib/gmx_lapack/dlagts.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlagts.c -fPIC -DPIC -o .libs/dlagts.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlarft.lo ../../../../src/gmxlib/gmx_lapack/dlarft.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlarft.c -fPIC -DPIC -o .libs/dlarft.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dgesdd.lo ../../../../src/gmxlib/gmx_lapack/dgesdd.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgesdd.c -fPIC -DPIC -o .libs/dgesdd.o ../../../../src/gmxlib/gmx_lapack/dgesdd.c: In function 'dgesdd_': ../../../../src/gmxlib/gmx_lapack/dgesdd.c:40:9: warning: variable 'wntqas' set but not used [-Wunused-but-set-variable] int wntqas, lquery; ^~~~~~ ../../../../src/gmxlib/gmx_lapack/dgesdd.c:38:9: warning: variable 'minwrk' set but not used [-Wunused-but-set-variable] int minwrk, ldwrku, maxwrk, ldwkvt; ^~~~~~ ../../../../src/gmxlib/gmx_lapack/dgesdd.c:35:16: warning: variable 'wntqo' set but not used [-Wunused-but-set-variable] int wntqn, wntqo, wntqs; ^~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlascl.lo ../../../../src/gmxlib/gmx_lapack/dlascl.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlascl.c -fPIC -DPIC -o .libs/dlascl.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasd8.lo ../../../../src/gmxlib/gmx_lapack/dlasd8.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasd8.c -fPIC -DPIC -o .libs/dlasd8.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dorgbr.lo ../../../../src/gmxlib/gmx_lapack/dorgbr.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dorgbr.c -fPIC -DPIC -o .libs/dorgbr.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dormql.lo ../../../../src/gmxlib/gmx_lapack/dormql.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dormql.c -fPIC -DPIC -o .libs/dormql.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlaev2.lo ../../../../src/gmxlib/gmx_lapack/dlaev2.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlaev2.c -fPIC -DPIC -o .libs/dlaev2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasq5.lo ../../../../src/gmxlib/gmx_lapack/dlasq5.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasq5.c -fPIC -DPIC -o .libs/dlasq5.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasrt2.lo ../../../../src/gmxlib/gmx_lapack/dlasrt2.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasrt2.c -fPIC -DPIC -o .libs/dlasrt2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dsyevr.lo ../../../../src/gmxlib/gmx_lapack/dsyevr.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dsyevr.c -fPIC -DPIC -o .libs/dsyevr.o ../../../../src/gmxlib/gmx_lapack/dsyevr.c: In function 'dsyevr_': ../../../../src/gmxlib/gmx_lapack/dsyevr.c:36:12: warning: variable 'abstll' set but not used [-Wunused-but-set-variable] double abstll, bignum; ^~~~~~ ../../../../src/gmxlib/gmx_lapack/dsyevr.c:33:17: warning: variable 'ieeeok' set but not used [-Wunused-but-set-variable] int iscale, ieeeok, indibl, indifl; ^~~~~~ ../../../../src/gmxlib/gmx_lapack/dsyevr.c:21:22: warning: variable 'vuu' set but not used [-Wunused-but-set-variable] double eps, vll, vuu, tmp1; ^~~ ../../../../src/gmxlib/gmx_lapack/dsyevr.c:21:17: warning: variable 'vll' set but not used [-Wunused-but-set-variable] double eps, vll, vuu, tmp1; ^~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlansy.lo ../../../../src/gmxlib/gmx_lapack/dlansy.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlansy.c -fPIC -DPIC -o .libs/dlansy.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlarrfx.lo ../../../../src/gmxlib/gmx_lapack/dlarrfx.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlarrfx.c -fPIC -DPIC -o .libs/dlarrfx.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dsteqr.lo ../../../../src/gmxlib/gmx_lapack/dsteqr.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dsteqr.c -fPIC -DPIC -o .libs/dsteqr.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlar1vx.lo ../../../../src/gmxlib/gmx_lapack/dlar1vx.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlar1vx.c -fPIC -DPIC -o .libs/dlar1vx.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlarrbx.lo ../../../../src/gmxlib/gmx_lapack/dlarrbx.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlarrbx.c -fPIC -DPIC -o .libs/dlarrbx.o ../../../../src/gmxlib/gmx_lapack/dlarrbx.c: In function 'dlarrbx_': ../../../../src/gmxlib/gmx_lapack/dlarrbx.c:36:33: warning: variable 'error' set but not used [-Wunused-but-set-variable] double right, width, dplus, error; ^~~~~ ../../../../src/gmxlib/gmx_lapack/dlarrbx.c:34:12: warning: variable 'eps' set but not used [-Wunused-but-set-variable] double eps, tmp, left; ^~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sgetf2.lo ../../../../src/gmxlib/gmx_lapack/sgetf2.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgetf2.c -fPIC -DPIC -o .libs/sgetf2.o ../../../../src/gmxlib/gmx_lapack/sgetf2.c: In function 'sgetf2_': ../../../../src/gmxlib/gmx_lapack/sgetf2.c:17:9: warning: variable 'one' set but not used [-Wunused-but-set-variable] float one,minusone; ^~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slamrg.lo ../../../../src/gmxlib/gmx_lapack/slamrg.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slamrg.c -fPIC -DPIC -o .libs/slamrg.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slarnv.lo ../../../../src/gmxlib/gmx_lapack/slarnv.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarnv.c -fPIC -DPIC -o .libs/slarnv.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sbdsdc.lo ../../../../src/gmxlib/gmx_lapack/sbdsdc.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sbdsdc.c -fPIC -DPIC -o .libs/sbdsdc.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlarrex.lo ../../../../src/gmxlib/gmx_lapack/dlarrex.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlarrex.c -fPIC -DPIC -o .libs/dlarrex.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasd0.lo ../../../../src/gmxlib/gmx_lapack/slasd0.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasd0.c -fPIC -DPIC -o .libs/slasd0.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlarrvx.lo ../../../../src/gmxlib/gmx_lapack/dlarrvx.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlarrvx.c -fPIC -DPIC -o .libs/dlarrvx.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasq6.lo ../../../../src/gmxlib/gmx_lapack/slasq6.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasq6.c -fPIC -DPIC -o .libs/slasq6.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasda.lo ../../../../src/gmxlib/gmx_lapack/slasda.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasda.c -fPIC -DPIC -o .libs/slasda.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sorgl2.lo ../../../../src/gmxlib/gmx_lapack/sorgl2.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sorgl2.c -fPIC -DPIC -o .libs/sorgl2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sormqr.lo ../../../../src/gmxlib/gmx_lapack/sormqr.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sormqr.c -fPIC -DPIC -o .libs/sormqr.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sgetrf.lo ../../../../src/gmxlib/gmx_lapack/sgetrf.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgetrf.c -fPIC -DPIC -o .libs/sgetrf.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slange.lo ../../../../src/gmxlib/gmx_lapack/slange.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slange.c -fPIC -DPIC -o .libs/slange.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasd1.lo ../../../../src/gmxlib/gmx_lapack/slasd1.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasd1.c -fPIC -DPIC -o .libs/slasd1.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ssytrd.lo ../../../../src/gmxlib/gmx_lapack/ssytrd.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/ssytrd.c -fPIC -DPIC -o .libs/ssytrd.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sormtr.lo ../../../../src/gmxlib/gmx_lapack/sormtr.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sormtr.c -fPIC -DPIC -o .libs/sormtr.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sorglq.lo ../../../../src/gmxlib/gmx_lapack/sorglq.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sorglq.c -fPIC -DPIC -o .libs/sorglq.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasdq.lo ../../../../src/gmxlib/gmx_lapack/slasdq.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasdq.c -fPIC -DPIC -o .libs/slasdq.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sgebd2.lo ../../../../src/gmxlib/gmx_lapack/sgebd2.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgebd2.c -fPIC -DPIC -o .libs/sgebd2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasr.lo ../../../../src/gmxlib/gmx_lapack/slasr.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasr.c -fPIC -DPIC -o .libs/slasr.o ../../../../src/gmxlib/gmx_lapack/slasr.c: In function 'slasr_': ../../../../src/gmxlib/gmx_lapack/slasr.c:21:17: warning: variable 'info' set but not used [-Wunused-but-set-variable] int i__, j, info; ^~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slanst.lo ../../../../src/gmxlib/gmx_lapack/slanst.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slanst.c -fPIC -DPIC -o .libs/slanst.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasdt.lo ../../../../src/gmxlib/gmx_lapack/slasdt.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasdt.c -fPIC -DPIC -o .libs/slasdt.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sbdsqr.lo ../../../../src/gmxlib/gmx_lapack/sbdsqr.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sbdsqr.c -fPIC -DPIC -o .libs/sbdsqr.o ../../../../src/gmxlib/gmx_lapack/sbdsqr.c: In function 'sbdsqr_': ../../../../src/gmxlib/gmx_lapack/sbdsqr.c:61:11: warning: unused variable 'ftmp' [-Wunused-variable] float ftmp; ^~~~ ../../../../src/gmxlib/gmx_lapack/sbdsqr.c:59:11: warning: variable 'sminlo' set but not used [-Wunused-but-set-variable] float sminlo, tolmul; ^~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasrt.lo ../../../../src/gmxlib/gmx_lapack/slasrt.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasrt.c -fPIC -DPIC -o .libs/slasrt.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slabrd.lo ../../../../src/gmxlib/gmx_lapack/slabrd.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slabrd.c -fPIC -DPIC -o .libs/slabrd.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sorgqr.lo ../../../../src/gmxlib/gmx_lapack/sorgqr.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c 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/bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sgebrd.lo ../../../../src/gmxlib/gmx_lapack/sgebrd.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgebrd.c -fPIC -DPIC -o .libs/sgebrd.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasd2.lo ../../../../src/gmxlib/gmx_lapack/slasd2.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasd2.c -fPIC -DPIC -o .libs/slasd2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slapy2.lo ../../../../src/gmxlib/gmx_lapack/slapy2.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c 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../../../../src/gmxlib/gmx_lapack/sgeqrf.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgeqrf.c -fPIC -DPIC -o .libs/sgeqrf.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slarfg.lo ../../../../src/gmxlib/gmx_lapack/slarfg.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c 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../../../../src/gmxlib/gmx_lapack/sorg2r.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sorg2r.c -fPIC -DPIC -o .libs/sorg2r.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sormlq.lo ../../../../src/gmxlib/gmx_lapack/sormlq.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c 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/bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasd7.lo ../../../../src/gmxlib/gmx_lapack/slasd7.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasd7.c -fPIC -DPIC -o .libs/slasd7.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasq4.lo ../../../../src/gmxlib/gmx_lapack/slasq4.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasq4.c -fPIC -DPIC -o .libs/slasq4.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slagts.lo ../../../../src/gmxlib/gmx_lapack/slagts.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slagts.c -fPIC -DPIC -o .libs/slagts.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sgesdd.lo ../../../../src/gmxlib/gmx_lapack/sgesdd.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgesdd.c -fPIC -DPIC -o .libs/sgesdd.o ../../../../src/gmxlib/gmx_lapack/sgesdd.c: In function 'sgesdd_': ../../../../src/gmxlib/gmx_lapack/sgesdd.c:40:9: warning: variable 'wntqas' set but not used [-Wunused-but-set-variable] int wntqas, lquery; ^~~~~~ ../../../../src/gmxlib/gmx_lapack/sgesdd.c:38:9: warning: variable 'minwrk' set but not used [-Wunused-but-set-variable] int minwrk, ldwrku, maxwrk, ldwkvt; ^~~~~~ ../../../../src/gmxlib/gmx_lapack/sgesdd.c:35:16: warning: variable 'wntqo' set but not used [-Wunused-but-set-variable] int wntqn, wntqo, wntqs; ^~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slarft.lo ../../../../src/gmxlib/gmx_lapack/slarft.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall 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'/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasq5.lo ../../../../src/gmxlib/gmx_lapack/slasq5.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasq5.c -fPIC -DPIC -o .libs/slasq5.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasrt2.lo ../../../../src/gmxlib/gmx_lapack/slasrt2.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasrt2.c -fPIC -DPIC -o .libs/slasrt2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ssyevr.lo ../../../../src/gmxlib/gmx_lapack/ssyevr.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/ssyevr.c -fPIC -DPIC -o .libs/ssyevr.o ../../../../src/gmxlib/gmx_lapack/ssyevr.c: In function 'ssyevr_': ../../../../src/gmxlib/gmx_lapack/ssyevr.c:36:11: warning: variable 'abstll' set but not used [-Wunused-but-set-variable] float abstll, bignum; ^~~~~~ ../../../../src/gmxlib/gmx_lapack/ssyevr.c:33:17: warning: variable 'ieeeok' set but not used [-Wunused-but-set-variable] int iscale, ieeeok, indibl, indifl; ^~~~~~ ../../../../src/gmxlib/gmx_lapack/ssyevr.c:21:21: warning: variable 'vuu' set but not used [-Wunused-but-set-variable] float eps, vll, vuu, tmp1; ^~~ ../../../../src/gmxlib/gmx_lapack/ssyevr.c:21:16: warning: variable 'vll' set but not used [-Wunused-but-set-variable] float eps, vll, vuu, tmp1; ^~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slansy.lo ../../../../src/gmxlib/gmx_lapack/slansy.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slansy.c -fPIC -DPIC -o .libs/slansy.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slarrfx.lo ../../../../src/gmxlib/gmx_lapack/slarrfx.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarrfx.c -fPIC -DPIC -o .libs/slarrfx.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ssteqr.lo ../../../../src/gmxlib/gmx_lapack/ssteqr.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/ssteqr.c -fPIC -DPIC -o .libs/ssteqr.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slar1vx.lo ../../../../src/gmxlib/gmx_lapack/slar1vx.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slar1vx.c -fPIC -DPIC -o .libs/slar1vx.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ilasrt2.lo ../../../../src/gmxlib/gmx_lapack/ilasrt2.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/ilasrt2.c -fPIC -DPIC -o .libs/ilasrt2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slarrbx.lo ../../../../src/gmxlib/gmx_lapack/slarrbx.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarrbx.c -fPIC -DPIC -o .libs/slarrbx.o ../../../../src/gmxlib/gmx_lapack/slarrbx.c: In function 'slarrbx_': ../../../../src/gmxlib/gmx_lapack/slarrbx.c:36:32: warning: variable 'error' set but not used [-Wunused-but-set-variable] float right, width, dplus, error; ^~~~~ ../../../../src/gmxlib/gmx_lapack/slarrbx.c:34:11: warning: variable 'eps' set but not used [-Wunused-but-set-variable] float eps, tmp, left; ^~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slarrex.lo ../../../../src/gmxlib/gmx_lapack/slarrex.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarrex.c -fPIC -DPIC -o .libs/slarrex.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slarrvx.lo ../../../../src/gmxlib/gmx_lapack/slarrvx.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarrvx.c -fPIC -DPIC -o .libs/slarrvx.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o liblapack.la dbdsdc.lo dgetf2.lo dlamrg.lo dlarnv.lo dlasd0.lo dlasda.lo dlasq6.lo dorgl2.lo dormqr.lo dbdsqr.lo dgetrf.lo dlange.lo dlasd1.lo dtrtri.lo dlasdq.lo dlasr.lo dorglq.lo dormtr.lo dgebd2.lo dlabrd.lo dlanst.lo dlasd2.lo dlasdt.lo dlasrt.lo dorgqr.lo dstebz.lo dgebrd.lo dsytrd.lo dlacpy.lo dlapy2.lo dlasd3.lo dlaset.lo dlassq.lo dorm2l.lo dgetrs.lo dstegr.lo dgelq2.lo dlae2.lo dlasd4.lo dlasq1.lo dtrti2.lo dgetri.lo dlasv2.lo dorm2r.lo dstein.lo dgelqf.lo dlaebz.lo dlarf.lo dlartg.lo dlasd5.lo dlasq2.lo dlaswp.lo dormbr.lo dsterf.lo dgeqr2.lo dlaed6.lo dlarfb.lo dlaruv.lo dlasd6.lo dlasq3.lo dlatrd.lo dorml2.lo dstevr.lo dgeqrf.lo dlagtf.lo dlarfg.lo dlas2.lo dlasd7.lo dlasq4.lo dorg2r.lo dormlq.lo dsytd2.lo dgesdd.lo dlagts.lo dlarft.lo dlascl.lo dlasd8.lo dlasq5.lo dorgbr.lo dormql.lo dlaev2.lo dsteqr.lo dsyevr.lo dlasrt2.lo dlansy.lo dlar1vx.lo dlarrbx.lo dlarrex.lo dlarrfx.lo dlarrvx.lo sbdsdc.lo sgetf2.lo slamrg.lo slarnv.lo slasd0.lo slasda.lo slasq6.lo sorgl2.lo sormqr.lo sbdsqr.lo sgetrf.lo slange.lo slasd1.lo ssytrd.lo slasdq.lo slasr.lo sorglq.lo sormtr.lo sgebd2.lo slabrd.lo slanst.lo slasd2.lo slasdt.lo slasrt.lo sorgqr.lo sstebz.lo sgebrd.lo sgetrs.lo slacpy.lo slapy2.lo slasd3.lo slaset.lo slassq.lo sorm2l.lo sgetri.lo sstegr.lo sgelq2.lo slae2.lo slasd4.lo slasq1.lo strti2.lo strtri.lo slasv2.lo sorm2r.lo sstein.lo sgelqf.lo slaebz.lo slarf.lo slartg.lo slasd5.lo slasq2.lo slaswp.lo sormbr.lo ssterf.lo sgeqr2.lo slaed6.lo slarfb.lo slaruv.lo slasd6.lo slasq3.lo slatrd.lo sorml2.lo sstevr.lo sgeqrf.lo slagtf.lo slarfg.lo slas2.lo slasd7.lo slasq4.lo sorg2r.lo sormlq.lo ssytd2.lo sgesdd.lo slagts.lo slarft.lo slascl.lo slasd8.lo slasq5.lo sorgbr.lo sormql.lo slaev2.lo ssteqr.lo ssyevr.lo slasrt2.lo slansy.lo slar1vx.lo slarrbx.lo slarrex.lo slarrfx.lo slarrvx.lo ilasrt2.lo -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath ar cru .libs/liblapack.a .libs/dbdsdc.o .libs/dgetf2.o .libs/dlamrg.o .libs/dlarnv.o .libs/dlasd0.o .libs/dlasda.o .libs/dlasq6.o .libs/dorgl2.o .libs/dormqr.o .libs/dbdsqr.o .libs/dgetrf.o .libs/dlange.o .libs/dlasd1.o .libs/dtrtri.o .libs/dlasdq.o .libs/dlasr.o .libs/dorglq.o .libs/dormtr.o .libs/dgebd2.o .libs/dlabrd.o .libs/dlanst.o .libs/dlasd2.o .libs/dlasdt.o .libs/dlasrt.o .libs/dorgqr.o .libs/dstebz.o .libs/dgebrd.o .libs/dsytrd.o .libs/dlacpy.o .libs/dlapy2.o .libs/dlasd3.o .libs/dlaset.o .libs/dlassq.o .libs/dorm2l.o .libs/dgetrs.o .libs/dstegr.o .libs/dgelq2.o .libs/dlae2.o .libs/dlasd4.o .libs/dlasq1.o .libs/dtrti2.o .libs/dgetri.o .libs/dlasv2.o .libs/dorm2r.o .libs/dstein.o .libs/dgelqf.o .libs/dlaebz.o .libs/dlarf.o .libs/dlartg.o .libs/dlasd5.o .libs/dlasq2.o .libs/dlaswp.o .libs/dormbr.o .libs/dsterf.o .libs/dgeqr2.o .libs/dlaed6.o .libs/dlarfb.o .libs/dlaruv.o .libs/dlasd6.o .libs/dlasq3.o .libs/dlatrd.o .libs/dorml2.o .libs/dstevr.o .libs/dgeqrf.o .libs/dlagtf.o .libs/dlarfg.o .libs/dlas2.o .libs/dlasd7.o .libs/dlasq4.o .libs/dorg2r.o .libs/dormlq.o .libs/dsytd2.o .libs/dgesdd.o .libs/dlagts.o .libs/dlarft.o .libs/dlascl.o .libs/dlasd8.o .libs/dlasq5.o .libs/dorgbr.o .libs/dormql.o .libs/dlaev2.o .libs/dsteqr.o .libs/dsyevr.o .libs/dlasrt2.o .libs/dlansy.o .libs/dlar1vx.o .libs/dlarrbx.o .libs/dlarrex.o .libs/dlarrfx.o .libs/dlarrvx.o .libs/sbdsdc.o .libs/sgetf2.o .libs/slamrg.o .libs/slarnv.o .libs/slasd0.o .libs/slasda.o .libs/slasq6.o .libs/sorgl2.o .libs/sormqr.o .libs/sbdsqr.o .libs/sgetrf.o .libs/slange.o .libs/slasd1.o .libs/ssytrd.o .libs/slasdq.o .libs/slasr.o .libs/sorglq.o .libs/sormtr.o .libs/sgebd2.o .libs/slabrd.o .libs/slanst.o .libs/slasd2.o .libs/slasdt.o .libs/slasrt.o .libs/sorgqr.o .libs/sstebz.o .libs/sgebrd.o .libs/sgetrs.o .libs/slacpy.o .libs/slapy2.o .libs/slasd3.o .libs/slaset.o .libs/slassq.o .libs/sorm2l.o .libs/sgetri.o .libs/sstegr.o .libs/sgelq2.o .libs/slae2.o .libs/slasd4.o .libs/slasq1.o .libs/strti2.o .libs/strtri.o .libs/slasv2.o .libs/sorm2r.o .libs/sstein.o .libs/sgelqf.o .libs/slaebz.o .libs/slarf.o .libs/slartg.o .libs/slasd5.o .libs/slasq2.o .libs/slaswp.o .libs/sormbr.o .libs/ssterf.o .libs/sgeqr2.o .libs/slaed6.o .libs/slarfb.o .libs/slaruv.o .libs/slasd6.o .libs/slasq3.o .libs/slatrd.o .libs/sorml2.o .libs/sstevr.o .libs/sgeqrf.o .libs/slagtf.o .libs/slarfg.o .libs/slas2.o .libs/slasd7.o .libs/slasq4.o .libs/sorg2r.o .libs/sormlq.o .libs/ssytd2.o .libs/sgesdd.o .libs/slagts.o .libs/slarft.o .libs/slascl.o .libs/slasd8.o .libs/slasq5.o .libs/sorgbr.o .libs/sormql.o .libs/slaev2.o .libs/ssteqr.o .libs/ssyevr.o .libs/slasrt2.o .libs/slansy.o .libs/slar1vx.o .libs/slarrbx.o .libs/slarrex.o .libs/slarrfx.o .libs/slarrvx.o .libs/ilasrt2.o ranlib .libs/liblapack.a creating liblapack.la (cd .libs && rm -f liblapack.la && ln -s ../liblapack.la liblapack.la) make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o calcgrid.lo ../../../src/gmxlib/calcgrid.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/calcgrid.c -fPIC -DPIC -o .libs/calcgrid.o ../../../src/gmxlib/calcgrid.c: In function 'calc_grid': ../../../src/gmxlib/calcgrid.c:89:8: warning: unused variable 'tmp' [-Wunused-variable] real tmp[3]; ^~~ ../../../src/gmxlib/calcgrid.c:86:10: warning: unused variable 'j' [-Wunused-variable] int i,j,nmin[DIM]; ^ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o copyrite.lo ../../../src/gmxlib/copyrite.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/copyrite.c -fPIC -DPIC -o .libs/copyrite.o ../../../src/gmxlib/copyrite.c: In function 'cool_quote': ../../../src/gmxlib/copyrite.c:181:9: warning: unused variable 's' [-Wunused-variable] char *s,*ptr; ^ ../../../src/gmxlib/copyrite.c: In function 'please_cite': ../../../src/gmxlib/copyrite.c:469:8: warning: unused variable 'j' [-Wunused-variable] int j,index; ^ In file included from ../../../include/statutil.h:51, from ../../../src/gmxlib/copyrite.c:53: At top level: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o calch.lo ../../../src/gmxlib/calch.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/calch.c -fPIC -DPIC -o .libs/calch.o ../../../src/gmxlib/calch.c: In function 'gen_waterhydrogen': ../../../src/gmxlib/calch.c:81:14: warning: unused variable 'kkk' [-Wunused-variable] rvec kkk; ^~~ In file included from ../../../src/gmxlib/calch.c:43: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../src/gmxlib/calch.c:42: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o 3dview.lo ../../../src/gmxlib/3dview.c mkdir .libs mkdir: cannot create directory '.libs': File exists x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/3dview.c -fPIC -DPIC -o .libs/3dview.o ../../../src/gmxlib/3dview.c: In function 'reset_view': ../../../src/gmxlib/3dview.c:282:8: warning: unused variable 'i' [-Wunused-variable] int i; ^ In file included from ../../../src/gmxlib/3dview.c:47: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/gmxlib/3dview.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o atomprop.lo ../../../src/gmxlib/atomprop.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/atomprop.c -fPIC -DPIC -o .libs/atomprop.o In file included from ../../../src/gmxlib/atomprop.c:52: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/gmxlib/atomprop.c:45: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o do_fit.lo ../../../src/gmxlib/do_fit.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/do_fit.c -fPIC -DPIC -o .libs/do_fit.o ../../../src/gmxlib/do_fit.c: In function 'calc_fit_R': ../../../src/gmxlib/do_fit.c:103:18: warning: unused variable 'm' [-Wunused-variable] int c,r,n,j,m,i,irot,s; ^ ../../../src/gmxlib/do_fit.c: In function 'do_fit_ndim': ../../../src/gmxlib/do_fit.c:214:10: warning: unused variable 'i' [-Wunused-variable] int i,j,m,r,c; ^ In file included from ../../../src/gmxlib/do_fit.c:44: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../src/gmxlib/do_fit.c:40: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o disre.lo ../../../src/gmxlib/disre.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/disre.c -fPIC -DPIC -o .libs/disre.o ../../../src/gmxlib/disre.c: In function 'init_disres': ../../../src/gmxlib/disre.c:62:19: warning: variable 'ip' set but not used [-Wunused-but-set-variable] t_iparams *ip; ^~ ../../../src/gmxlib/disre.c:61:26: warning: unused variable 'i' [-Wunused-variable] int fa,nmol,i,npair,np; ^ ../../../src/gmxlib/disre.c: In function 'calc_disres_R_6': ../../../src/gmxlib/disre.c:217:23: warning: unused variable 'dt' [-Wunused-variable] ivec it,jt,dt; ^~ ../../../src/gmxlib/disre.c:217:20: warning: unused variable 'jt' [-Wunused-variable] ivec it,jt,dt; ^~ ../../../src/gmxlib/disre.c:217:17: warning: unused variable 'it' [-Wunused-variable] ivec it,jt,dt; ^~ ../../../src/gmxlib/disre.c:212:37: warning: unused variable 'm' [-Wunused-variable] int fa,res,i,pair,ki,kj,m; ^ ../../../src/gmxlib/disre.c:212:34: warning: unused variable 'kj' [-Wunused-variable] int fa,res,i,pair,ki,kj,m; ^~ ../../../src/gmxlib/disre.c:212:31: warning: unused variable 'ki' [-Wunused-variable] int fa,res,i,pair,ki,kj,m; ^~ ../../../src/gmxlib/disre.c:212:24: warning: unused variable 'i' [-Wunused-variable] int fa,res,i,pair,ki,kj,m; ^ ../../../src/gmxlib/disre.c: In function 'ta_disres': ../../../src/gmxlib/disre.c:338:20: warning: unused variable 'jt' [-Wunused-variable] ivec it,jt,dt; ^~ ../../../src/gmxlib/disre.c:338:17: warning: unused variable 'it' [-Wunused-variable] ivec it,jt,dt; ^~ In file included from ../../../src/gmxlib/disre.c:52: At top level: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/gmxlib/disre.c:47: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/gmxlib/disre.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_fatal.lo ../../../src/gmxlib/gmx_fatal.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/gmx_fatal.c -fPIC -DPIC -o .libs/gmx_fatal.o ../../../src/gmxlib/gmx_fatal.c:226:13: warning: 'fatal_error' defined but not used [-Wunused-function] static void fatal_error(int f_errno,const char *fmt,...) ^~~~~~~~~~~ ../../../src/gmxlib/gmx_fatal.c:115:13: warning: 'bputi' defined but not used [-Wunused-function] static void bputi(char *msg,int *len,int val,int radix,int fld,bool bNeg) ^~~~~ In file included from ../../../src/gmxlib/gmx_fatal.c:50: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/gmxlib/gmx_fatal.c:46: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o checkpoint.lo ../../../src/gmxlib/checkpoint.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/checkpoint.c -fPIC -DPIC -o .libs/checkpoint.o ../../../src/gmxlib/checkpoint.c: In function 'do_cpte_ints': ../../../src/gmxlib/checkpoint.c:305:16: warning: unused variable 'i' [-Wunused-variable] int nf,dt,i; ^ ../../../src/gmxlib/checkpoint.c: In function 'do_cpte_doubles': ../../../src/gmxlib/checkpoint.c:371:16: warning: unused variable 'i' [-Wunused-variable] int nf,dt,i; ^ ../../../src/gmxlib/checkpoint.c: In function 'do_cpt_header': ../../../src/gmxlib/checkpoint.c:534:10: warning: unused variable 'i' [-Wunused-variable] int i; ^ ../../../src/gmxlib/checkpoint.c: In function 'write_checkpoint': ../../../src/gmxlib/checkpoint.c:837:30: warning: unused variable 'i' [-Wunused-variable] int flags_eks,flags_enh,i; ^ ../../../src/gmxlib/checkpoint.c:833:29: warning: unused variable 'flag_64bit' [-Wunused-variable] int nppnodes,npmenodes,flag_64bit; ^~~~~~~~~~ ../../../src/gmxlib/checkpoint.c: In function 'read_checkpoint': ../../../src/gmxlib/checkpoint.c:1254:40: warning: left-hand operand of comma expression has no effect [-Wunused-value] if (outputfiles[i].filename,outputfiles[i].offset < 0) ^ ../../../src/gmxlib/checkpoint.c:1036:7: warning: unused variable 'filename' [-Wunused-variable] char filename[STRLEN]; ^~~~~~~~ ../../../src/gmxlib/checkpoint.c:1033:15: warning: unused variable 'j' [-Wunused-variable] int fp,i,j; ^ ../../../src/gmxlib/checkpoint.c: In function 'list_checkpoint': ../../../src/gmxlib/checkpoint.c:1421:12: warning: unused variable 'j' [-Wunused-variable] int i,j; ^ ../../../src/gmxlib/checkpoint.c:1421:10: warning: unused variable 'i' [-Wunused-variable] int i,j; ^ ../../../src/gmxlib/checkpoint.c:1420:10: warning: unused variable 'indent' [-Wunused-variable] int indent; ^~~~~~ In file included from ../../../src/gmxlib/checkpoint.c:34: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/gmxlib/checkpoint.c:34: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/gmxlib/checkpoint.c:32: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ewald_util.lo ../../../src/gmxlib/ewald_util.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/ewald_util.c -fPIC -DPIC -o .libs/ewald_util.o In file included from ../../../src/gmxlib/ewald_util.c:43: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/gmxlib/ewald_util.c:43: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o enxio.lo ../../../src/gmxlib/enxio.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/enxio.c -fPIC -DPIC -o .libs/enxio.o ../../../src/gmxlib/enxio.c: In function 'empty_file': ../../../src/gmxlib/enxio.c:220:8: warning: variable 'ret' set but not used [-Wunused-but-set-variable] int ret; ^~~ ../../../src/gmxlib/enxio.c: In function 'get_enx_state': ../../../src/gmxlib/enxio.c:443:16: warning: unused variable 'pcouplmu_nm' [-Wunused-variable] static char *pcouplmu_nm[] = { ^~~~~~~~~~~ At top level: ../../../src/gmxlib/enxio.c:443:16: warning: 'pcouplmu_nm' defined but not used [-Wunused-variable] In file included from ../../../src/gmxlib/enxio.c:46: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/gmxlib/enxio.c:46: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ffscanf.lo ../../../src/gmxlib/ffscanf.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/ffscanf.c -fPIC -DPIC -o .libs/ffscanf.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o confio.lo ../../../src/gmxlib/confio.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/confio.c -fPIC -DPIC -o .libs/confio.o ../../../src/gmxlib/confio.c: In function 'read_espresso_conf': ../../../src/gmxlib/confio.c:448:21: warning: unused variable 'npar' [-Wunused-variable] int natoms,level,npar,r,nprop,p,i,m; ^~~~ ../../../src/gmxlib/confio.c:448:8: warning: unused variable 'natoms' [-Wunused-variable] int natoms,level,npar,r,nprop,p,i,m; ^~~~~~ ../../../src/gmxlib/confio.c: In function 'read_stx_conf': ../../../src/gmxlib/confio.c:1298:14: warning: unused variable 'd' [-Wunused-variable] real d,r1,r2; ^ ../../../src/gmxlib/confio.c:1293:14: warning: unused variable 'buf' [-Wunused-variable] char buf[256]; ^~~ At top level: ../../../src/gmxlib/confio.c:864:13: warning: 'get_conf' defined but not used [-Wunused-function] static void get_conf(FILE *in, char *title, int *natoms, ^~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/gmxlib/confio.c:59: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/gmxlib/confio.c:57: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/gmxlib/confio.c:54: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/gmxlib/confio.c:49: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/gmxlib/confio.c:49: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ ../../../src/gmxlib/confio.c: In function 'write_hconf_box': ../../../src/gmxlib/confio.c:983:20: warning: '%d' directive writing between 2 and 10 bytes into a region of size between 7 and 75 [-Wformat-overflow=] sprintf(format,"%%%d.%df%%%d.%df%%%d.%df" ^~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../src/gmxlib/confio.c:984:17: note: format string is defined here "%%%d.%df%%%d.%df%%%d.%df%%%d.%df%%%d.%df%%%d.%df\n", ^~ ../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [10, 2147483647] sprintf(format,"%%%d.%df%%%d.%df%%%d.%df" ^~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [5, 2147483647] ../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [10, 2147483647] ../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [5, 2147483647] ../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [10, 2147483647] ../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [5, 2147483647] ../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [10, 2147483647] ../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [5, 2147483647] ../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [10, 2147483647] ../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [5, 2147483647] In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../src/gmxlib/confio.c:41: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 56 and 209 bytes into a destination of size 100 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ifunc.lo ../../../src/gmxlib/ifunc.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/ifunc.c -fPIC -DPIC -o .libs/ifunc.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o cinvsqrtdata.lo ../../../src/gmxlib/cinvsqrtdata.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/cinvsqrtdata.c -fPIC -DPIC -o .libs/cinvsqrtdata.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gbutil.lo ../../../src/gmxlib/gbutil.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/gbutil.c -fPIC -DPIC -o .libs/gbutil.o In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/gmxlib/gbutil.c:45: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/gmxlib/gbutil.c:43: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/gmxlib/gbutil.c:43: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o futil.lo ../../../src/gmxlib/futil.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/futil.c -fPIC -DPIC -o .libs/futil.o ../../../src/gmxlib/futil.c: In function 'ffopen': ../../../src/gmxlib/futil.c:287:18: warning: unused variable 'bf' [-Wunused-variable] char buf[256],*bf,*bufsize=0,*ptr; ^~ ../../../src/gmxlib/futil.c: In function 'get_libdir': ../../../src/gmxlib/futil.c:397:22: warning: variable 'pdum' set but not used [-Wunused-but-set-variable] char *dir,*ptr,*s,*pdum; ^~~~ ../../../src/gmxlib/futil.c:395:8: warning: unused variable 'test_file' [-Wunused-variable] char test_file[MAX_PATHBUF]; ^~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/gmxlib/futil.c:53: At top level: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ ../../../src/gmxlib/futil.c: In function 'ffopen': ../../../src/gmxlib/futil.c:187:28: warning: '%s' directive writing up to 255 bytes into a region of size 244 [-Wformat-overflow=] sprintf(buf,"gunzip -c < %s",fn); ^~ ../../../src/gmxlib/futil.c:329:12: ff=gunzip(buf,mode); ~~~ In file included from /usr/include/stdio.h:862, from ../../../src/gmxlib/futil.c:41: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 13 and 268 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../src/gmxlib/futil.c:173:32: warning: '%s' directive writing up to 255 bytes into a region of size 240 [-Wformat-overflow=] sprintf(buf,"uncompress -c < %s",fn); ^~ ../../../src/gmxlib/futil.c:324:21: ff=uncompress(buf,mode); ~~~ In file included from /usr/include/stdio.h:862, from ../../../src/gmxlib/futil.c:41: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 17 and 272 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o macros.lo ../../../src/gmxlib/macros.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/macros.c -fPIC -DPIC -o .libs/macros.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o filenm.lo ../../../src/gmxlib/filenm.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/filenm.c -fPIC -DPIC -o .libs/filenm.o ../../../src/gmxlib/filenm.c: In function 'add_suffix_to_output_names': ../../../src/gmxlib/filenm.c:811:12: warning: unused variable 'pos' [-Wunused-variable] int i,j,pos; ^~~ In file included from ../../../include/wman.h:44, from ../../../src/gmxlib/filenm.c:48: At top level: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ ../../../src/gmxlib/filenm.c: In function 'add_suffix_to_output_names': ../../../src/gmxlib/filenm.c:825:27: warning: '.' directive writing 1 byte into a region of size between 0 and 4095 [-Wformat-overflow=] sprintf(newname,"%s.%s.%s",buf,suffix,extpos+1); ^ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../src/gmxlib/filenm.c:41: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 3 or more bytes (assuming 4098) into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o invblock.lo ../../../src/gmxlib/invblock.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/invblock.c -fPIC -DPIC -o .libs/invblock.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sparsematrix.lo ../../../src/gmxlib/sparsematrix.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/sparsematrix.c -fPIC -DPIC -o .libs/sparsematrix.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmxfio.lo ../../../src/gmxlib/gmxfio.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/gmxfio.c -fPIC -DPIC -o .libs/gmxfio.o ../../../src/gmxlib/gmxfio.c: In function 'gmx_fio_fopen': ../../../src/gmxlib/gmxfio.c:803:8: warning: unused variable 'fp' [-Wunused-variable] FILE *fp; ^~ ../../../src/gmxlib/gmxfio.c: In function 'gmx_fio_get_output_file_positions': ../../../src/gmxlib/gmxfio.c:885:27: warning: unused variable 'pos' [-Wunused-variable] long pos; ^~~ ../../../src/gmxlib/gmxfio.c:884:34: warning: unused variable 'pos_lo' [-Wunused-variable] int pos_hi,pos_lo; ^~~~~~ ../../../src/gmxlib/gmxfio.c:884:27: warning: unused variable 'pos_hi' [-Wunused-variable] int pos_hi,pos_lo; ^~~~~~ ../../../src/gmxlib/gmxfio.c:883:36: warning: unused variable 'rc' [-Wunused-variable] int i,nfiles,rc,nalloc; ^~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o maths.lo ../../../src/gmxlib/maths.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/maths.c -fPIC -DPIC -o .libs/maths.o ../../../src/gmxlib/maths.c: In function 'gmx_erfc': ../../../src/gmxlib/maths.c:291:31: warning: unused variable 'z4' [-Wunused-variable] double r1,r2,s1,s2,s3,z2,z4; ^~ ../../../src/gmxlib/maths.c:291:28: warning: unused variable 'z2' [-Wunused-variable] double r1,r2,s1,s2,s3,z2,z4; ^~ ../../../src/gmxlib/maths.c:291:25: warning: unused variable 's3' [-Wunused-variable] double r1,r2,s1,s2,s3,z2,z4; ^~ ../../../src/gmxlib/maths.c:291:22: warning: unused variable 's2' [-Wunused-variable] double r1,r2,s1,s2,s3,z2,z4; ^~ ../../../src/gmxlib/maths.c:291:19: warning: unused variable 's1' [-Wunused-variable] double r1,r2,s1,s2,s3,z2,z4; ^~ ../../../src/gmxlib/maths.c:291:16: warning: unused variable 'r2' [-Wunused-variable] double r1,r2,s1,s2,s3,z2,z4; ^~ ../../../src/gmxlib/maths.c:291:13: warning: unused variable 'r1' [-Wunused-variable] double r1,r2,s1,s2,s3,z2,z4; ^~ ../../../src/gmxlib/maths.c:337:13: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if(hx<0&&ix>=0x40180000) ^~ ../../../src/gmxlib/maths.c:339:10: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' R=rb0+s*(rb1+s*(rb2+s*(rb3+s*(rb4+s*(rb5+s*rb6))))); ^ In file included from ../../../src/gmxlib/maths.c:43: At top level: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o main.lo ../../../src/gmxlib/main.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/main.c -fPIC -DPIC -o .libs/main.o ../../../src/gmxlib/main.c: In function 'par_fn': ../../../src/gmxlib/main.c:68:7: warning: unused variable 'n' [-Wunused-variable] int n; ^ ../../../src/gmxlib/main.c: In function 'gmx_log_open': ../../../src/gmxlib/main.c:124:12: warning: unused variable 'testlen' [-Wunused-variable] int len,testlen,pid; ^~~~~~~ ../../../src/gmxlib/main.c: In function 'init_multisystem': ../../../src/gmxlib/main.c:235:8: warning: unused variable 'rank' [-Wunused-variable] int *rank; ^~~~ ../../../src/gmxlib/main.c: In function 'init_par': ../../../src/gmxlib/main.c:309:13: warning: unused variable 'i' [-Wunused-variable] int i; ^ ../../../src/gmxlib/main.c:308:15: warning: variable 'argv' set but not used [-Wunused-but-set-variable] char **argv; ^~~~ In file included from ../../../include/pull.h:44, from ../../../include/mdrun.h:56, from ../../../src/gmxlib/main.c:52: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../include/pull.h:44, from ../../../include/mdrun.h:56, from ../../../src/gmxlib/main.c:52: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/mdrun.h:50, from ../../../src/gmxlib/main.c:52: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o index.lo ../../../src/gmxlib/index.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/index.c -fPIC -DPIC -o .libs/index.o ../../../src/gmxlib/index.c: In function 'analyse_prot': ../../../src/gmxlib/index.c:298:15: warning: unused variable 'nnpres' [-Wunused-variable] int nra,nnpres,npres; ^~~~~~ ../../../src/gmxlib/index.c: In function 'init_index': ../../../src/gmxlib/index.c:532:19: warning: variable 'nread' set but not used [-Wunused-but-set-variable] int i,j,ng,nread; ^~~~~ In file included from ../../../src/gmxlib/index.c:51: At top level: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/gmxlib/index.c:48: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o bondfree.lo ../../../src/gmxlib/bondfree.c mkdir .libs x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/bondfree.c -fPIC -DPIC -o .libs/bondfree.o ../../../src/gmxlib/bondfree.c: In function 'FENE_bonds': ../../../src/gmxlib/bondfree.c:220:9: warning: unused variable 'dr' [-Wunused-variable] real dr,dr2,bm2,omdr2obm2,fbond,vbond,fij,vtot; ^~ ../../../src/gmxlib/bondfree.c: In function 'do_1_thole': ../../../src/gmxlib/bondfree.c:534:20: warning: unused variable 'r12n' [-Wunused-variable] real r12sq,r12_1,r12n,r12bar,v0,v1,fscal,ebar,fff; ^~~~ ../../../src/gmxlib/bondfree.c: In function 'posres': ../../../src/gmxlib/bondfree.c:1136:19: warning: unused variable 'fc' [-Wunused-variable] real v,vtot,fm,*fc; ^~ ../../../src/gmxlib/bondfree.c:1134:22: warning: unused variable 'ki' [-Wunused-variable] int i,ai,m,d,type,ki,npbcdim=0; ^~ ../../../src/gmxlib/bondfree.c: In function 'cross_bond_angle': ../../../src/gmxlib/bondfree.c:1687:32: warning: variable 't3' set but not used [-Wunused-but-set-variable] int i,ai,aj,ak,type,m,t1,t2,t3; ^~ ../../../src/gmxlib/bondfree.c: In function 'bonded_tab': ../../../src/gmxlib/bondfree.c:1762:10: warning: unused variable 'f' [-Wunused-variable] real v,f,dvdl; ^ ../../../src/gmxlib/bondfree.c:1762:8: warning: unused variable 'v' [-Wunused-variable] real v,f,dvdl; ^ ../../../src/gmxlib/bondfree.c: In function 'tab_angles': ../../../src/gmxlib/bondfree.c:1887:12: warning: unused variable 'snt' [-Wunused-variable] real snt,st,sth; ^~~ In file included from ../../../src/gmxlib/bondfree.c:56: At top level: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../src/gmxlib/bondfree.c:42: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/gmxlib/bondfree.c:42: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o names.lo ../../../src/gmxlib/names.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/names.c -fPIC -DPIC -o .libs/names.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o orires.lo ../../../src/gmxlib/orires.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/orires.c -fPIC -DPIC -o .libs/orires.o ../../../src/gmxlib/orires.c: In function 'init_orires': ../../../src/gmxlib/orires.c:59:26: warning: unused variable 'nr' [-Wunused-variable] int i,j,d,ex,nmol,nr,*nr_ex; ^~ In file included from ../../../src/gmxlib/orires.c:49: At top level: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/gmxlib/orires.c:43: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/gmxlib/orires.c:43: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o mtxio.lo ../../../src/gmxlib/mtxio.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/mtxio.c -fPIC -DPIC -o .libs/mtxio.o ../../../src/gmxlib/mtxio.c: In function 'gmx_mtxio_write': ../../../src/gmxlib/mtxio.c:90:13: warning: variable 'xd' set but not used [-Wunused-but-set-variable] XDR * xd; ^~ ../../../src/gmxlib/mtxio.c: In function 'gmx_mtxio_read': ../../../src/gmxlib/mtxio.c:164:13: warning: variable 'xd' set but not used [-Wunused-but-set-variable] XDR * xd; ^~ In file included from ../../../src/gmxlib/mtxio.c:48: At top level: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o network.lo ../../../src/gmxlib/network.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/network.c -fPIC -DPIC -o .libs/network.o ../../../src/gmxlib/network.c: In function 'gmx_mpi_initialized': ../../../src/gmxlib/network.c:57:7: warning: unused variable 'n' [-Wunused-variable] int n; ^ ../../../src/gmxlib/network.c: In function 'gmx_setup_nodecomm': ../../../src/gmxlib/network.c:245:40: warning: unused variable 'ni' [-Wunused-variable] int n,rank,resultlen,hostnum,i,j,ng,ni; ^~ ../../../src/gmxlib/network.c:245:37: warning: unused variable 'ng' [-Wunused-variable] int n,rank,resultlen,hostnum,i,j,ng,ni; ^~ ../../../src/gmxlib/network.c:245:35: warning: unused variable 'j' [-Wunused-variable] int n,rank,resultlen,hostnum,i,j,ng,ni; ^ ../../../src/gmxlib/network.c:245:33: warning: unused variable 'i' [-Wunused-variable] int n,rank,resultlen,hostnum,i,j,ng,ni; ^ ../../../src/gmxlib/network.c:245:25: warning: unused variable 'hostnum' [-Wunused-variable] int n,rank,resultlen,hostnum,i,j,ng,ni; ^~~~~~~ ../../../src/gmxlib/network.c:245:15: warning: unused variable 'resultlen' [-Wunused-variable] int n,rank,resultlen,hostnum,i,j,ng,ni; ^~~~~~~~~ ../../../src/gmxlib/network.c:245:10: warning: unused variable 'rank' [-Wunused-variable] int n,rank,resultlen,hostnum,i,j,ng,ni; ^~~~ ../../../src/gmxlib/network.c:245:8: warning: unused variable 'n' [-Wunused-variable] int n,rank,resultlen,hostnum,i,j,ng,ni; ^ ../../../src/gmxlib/network.c: In function 'gmx_finalize': ../../../src/gmxlib/network.c:522:7: warning: unused variable 'ret' [-Wunused-variable] int ret; ^~~ In file included from ../../../include/statutil.h:51, from ../../../src/gmxlib/network.c:46: At top level: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/gmxlib/network.c:45: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o mtop_util.lo ../../../src/gmxlib/mtop_util.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/mtop_util.c -fPIC -DPIC -o .libs/mtop_util.o ../../../src/gmxlib/mtop_util.c: In function 'gmx_mtop_atomnr_to_molblock_ind': ../../../src/gmxlib/mtop_util.c:105:14: warning: unused variable 'atoms' [-Wunused-variable] t_atoms *atoms; ^~~~~ ../../../src/gmxlib/mtop_util.c: In function 'gmx_mtop_atominfo_global': ../../../src/gmxlib/mtop_util.c:132:21: warning: unused variable 'molb' [-Wunused-variable] gmx_molblock_t *molb; ^~~~ ../../../src/gmxlib/mtop_util.c: In function 'gmx_mtop_ilistloop_all_next': ../../../src/gmxlib/mtop_util.c:384:21: warning: unused variable 'molb' [-Wunused-variable] gmx_molblock_t *molb; ^~~~ ../../../src/gmxlib/mtop_util.c: In function 'gmx_mtop_global_cgs': ../../../src/gmxlib/mtop_util.c:438:14: warning: unused variable 'atoms' [-Wunused-variable] t_atoms *atoms; ^~~~~ ../../../src/gmxlib/mtop_util.c: In function 'gen_local_top': ../../../src/gmxlib/mtop_util.c:669:31: warning: unused variable 'mt' [-Wunused-variable] int mb,srcnr,destnr,ftype,mt,natoms,nposre_old; ^~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nrama.lo ../../../src/gmxlib/nrama.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/nrama.c -fPIC -DPIC -o .libs/nrama.o ../../../src/gmxlib/nrama.c: In function 'get_dih2': ../../../src/gmxlib/nrama.c:179:11: warning: unused variable 'found' [-Wunused-variable] int found,**ff,thisff[NPP]; ^~~~~ ../../../src/gmxlib/nrama.c: In function 'init_rama': ../../../src/gmxlib/nrama.c:307:10: warning: unused variable 'ePBC' [-Wunused-variable] int ePBC; ^~~~ At top level: ../../../src/gmxlib/nrama.c:176:13: warning: 'get_dih2' defined but not used [-Wunused-function] static void get_dih2(t_xrama *xr,t_functype functype[], ^~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../include/nrama.h:45, from ../../../src/gmxlib/nrama.c:49: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ ../../../src/gmxlib/nrama.c: In function 'init_rama': ../../../src/gmxlib/nrama.c:125:21: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(buf,"%s-%d",*atoms->resname[atoms->atom[ff[1]].resnr], ^ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../src/gmxlib/nrama.c:41: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 3 or more bytes (assuming 13) into a destination of size 12 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o matio.lo ../../../src/gmxlib/matio.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/matio.c -fPIC -DPIC -o .libs/matio.o ../../../src/gmxlib/matio.c: In function 'write_xpm_map_split': ../../../src/gmxlib/matio.c:636:16: warning: unused variable 'fac' [-Wunused-variable] real r,g,b,fac; ^~~ ../../../src/gmxlib/matio.c:636:14: warning: unused variable 'b' [-Wunused-variable] real r,g,b,fac; ^ ../../../src/gmxlib/matio.c:636:12: warning: unused variable 'g' [-Wunused-variable] real r,g,b,fac; ^ ../../../src/gmxlib/matio.c:636:10: warning: unused variable 'r' [-Wunused-variable] real r,g,b,fac; ^ ../../../src/gmxlib/matio.c:635:10: warning: unused variable 'i' [-Wunused-variable] int i,ntot; ^ In file included from ../../../src/gmxlib/matio.c:50: At top level: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/gmxlib/matio.c:48: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o mshift.lo ../../../src/gmxlib/mshift.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/mshift.c -fPIC -DPIC -o .libs/mshift.o ../../../src/gmxlib/mshift.c: In function 'compact_graph': ../../../src/gmxlib/mshift.c:243:12: warning: unused variable 'e' [-Wunused-variable] atom_id *e; ^ ../../../src/gmxlib/mshift.c:242:9: warning: unused variable 'j' [-Wunused-variable] int i,j,n,max_nedge; ^ ../../../src/gmxlib/mshift.c: In function 'mk_graph_ilist': ../../../src/gmxlib/mshift.c:307:13: warning: variable 'nbtot' set but not used [-Wunused-but-set-variable] int i,nbtot; ^~~~~ In file included from ../../../src/gmxlib/mshift.c:46: At top level: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/gmxlib/mshift.c:44: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/gmxlib/mshift.c:44: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o mvdata.lo ../../../src/gmxlib/mvdata.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/mvdata.c -fPIC -DPIC -o .libs/mvdata.o ../../../src/gmxlib/mvdata.c: In function 'bc_atoms': ../../../src/gmxlib/mvdata.c:147:7: warning: unused variable 'dummy' [-Wunused-variable] int dummy; ^~~~~ ../../../src/gmxlib/mvdata.c: In function 'bc_groups': ../../../src/gmxlib/mvdata.c:162:7: warning: unused variable 'dummy' [-Wunused-variable] int dummy; ^~~~~ ../../../src/gmxlib/mvdata.c: In function 'bc_ffparams': ../../../src/gmxlib/mvdata.c:290:7: warning: unused variable 'i' [-Wunused-variable] int i; ^ ../../../src/gmxlib/mvdata.c: In function 'bc_molblock': ../../../src/gmxlib/mvdata.c:427:8: warning: unused variable 'bAlloc' [-Wunused-variable] bool bAlloc=TRUE; ^~~~~~ At top level: ../../../src/gmxlib/mvdata.c:275:13: warning: 'bc_idef' defined but not used [-Wunused-function] static void bc_idef(const t_commrec *cr,t_idef *idef) ^~~~~~~ In file included from ../../../src/gmxlib/mvdata.c:50: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/gmxlib/mvdata.c:50: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nrjac.lo ../../../src/gmxlib/nrjac.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/nrjac.c -fPIC -DPIC -o .libs/nrjac.o In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/gmxlib/nrjac.c:44: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nrnb.lo ../../../src/gmxlib/nrnb.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/nrnb.c -fPIC -DPIC -o .libs/nrnb.o ../../../src/gmxlib/nrnb.c: In function 'pr_load': ../../../src/gmxlib/nrnb.c:473:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(j=0; (j 0)?"d":"",'X'+m); ^ In file included from /usr/include/stdio.h:862, from ../../../src/mdlib/pull.c:42: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 4 and 14 bytes into a destination of size 10 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ns.lo ../../../src/mdlib/ns.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/ns.c -fPIC -DPIC -o .libs/ns.o ../../../src/mdlib/ns.c: In function 'new_i_nblist': ../../../src/mdlib/ns.c:394:20: warning: unused variable 'nshift' [-Wunused-variable] int i,k,nri,nshift; ^~~~~~ ../../../src/mdlib/ns.c:394:14: warning: unused variable 'k' [-Wunused-variable] int i,k,nri,nshift; ^ ../../../src/mdlib/ns.c:394:12: warning: unused variable 'i' [-Wunused-variable] int i,k,nri,nshift; ^ ../../../src/mdlib/ns.c: In function 'put_in_list': ../../../src/mdlib/ns.c:546:25: warning: unused variable 'rlj' [-Wunused-variable] real qi,qiB,qq,rlj; ^~~ ../../../src/mdlib/ns.c:546:22: warning: unused variable 'qq' [-Wunused-variable] real qi,qiB,qq,rlj; ^~ ../../../src/mdlib/ns.c:541:23: warning: unused variable 'len' [-Wunused-variable] int i0,nicg,len; ^~~ ../../../src/mdlib/ns.c:539:39: warning: unused variable 'ind_ij' [-Wunused-variable] int i,j,jcg,igid,gid,nbl_ind,ind_ij; ^~~~~~ ../../../src/mdlib/ns.c: In function 'ns_inner_tric': ../../../src/mdlib/ns.c:1283:15: warning: unused variable 'nsbuf' [-Wunused-variable] t_ns_buf *nsbuf; ^~~~~ ../../../src/mdlib/ns.c: In function 'ns_inner_rect': ../../../src/mdlib/ns.c:1314:15: warning: unused variable 'nsbuf' [-Wunused-variable] t_ns_buf *nsbuf; ^~~~~ ../../../src/mdlib/ns.c: In function 'ns_simple_core': ../../../src/mdlib/ns.c:1365:38: warning: unused variable 'nri' [-Wunused-variable] int nsearch,icg,jcg,igid,i0,nri,nn; ^~~ ../../../src/mdlib/ns.c:1365:35: warning: unused variable 'i0' [-Wunused-variable] int nsearch,icg,jcg,igid,i0,nri,nn; ^~ ../../../src/mdlib/ns.c:1365:26: warning: unused variable 'jcg' [-Wunused-variable] int nsearch,icg,jcg,igid,i0,nri,nn; ^~~ ../../../src/mdlib/ns.c: In function 'nsgrid_core': ../../../src/mdlib/ns.c:1674:58: warning: unused variable 'dcz' [-Wunused-variable] real r2,rs2,rvdw2,rcoul2,rm2,rl2,XI,YI,ZI,dcx,dcy,dcz,tmp1,tmp2; ^~~ ../../../src/mdlib/ns.c:1674:54: warning: unused variable 'dcy' [-Wunused-variable] real r2,rs2,rvdw2,rcoul2,rm2,rl2,XI,YI,ZI,dcx,dcy,dcz,tmp1,tmp2; ^~~ ../../../src/mdlib/ns.c:1674:50: warning: unused variable 'dcx' [-Wunused-variable] real r2,rs2,rvdw2,rcoul2,rm2,rl2,XI,YI,ZI,dcx,dcy,dcz,tmp1,tmp2; ^~~ ../../../src/mdlib/ns.c:1673:13: warning: unused variable 'xi' [-Wunused-variable] rvec xi,*cgcm,grid_offset; ^~ ../../../src/mdlib/ns.c:1669:42: warning: unused variable 'nri' [-Wunused-variable] int cg0,cg1,icg=-1,cgsnr,i0,igid,nri,naaj,max_jcg; ^~~ ../../../src/mdlib/ns.c:1666:45: warning: variable 'grid_z' set but not used [-Wunused-but-set-variable] real gridx,gridy,gridz,grid_x,grid_y,grid_z; ^~~~~~ ../../../src/mdlib/ns.c: In function 'init_ns': ../../../src/mdlib/ns.c:2177:11: warning: unused variable 'ptr' [-Wunused-variable] char *ptr; ^~~ ../../../src/mdlib/ns.c: In function 'search_neighbours': ../../../src/mdlib/ns.c:2280:23: warning: unused variable 'cg_end' [-Wunused-variable] int cg_start,cg_end,start,end; ^~~~~~ ../../../src/mdlib/ns.c:2280:14: warning: unused variable 'cg_start' [-Wunused-variable] int cg_start,cg_end,start,end; ^~~~~~~~ ../../../src/mdlib/ns.c:2279:15: warning: unused variable 'i_egp_flags' [-Wunused-variable] bool *i_egp_flags; ^~~~~~~~~~~ ../../../src/mdlib/ns.c:2278:15: warning: unused variable 'ptr' [-Wunused-variable] char *ptr; ^~~ ../../../src/mdlib/ns.c:2274:16: warning: unused variable 'j' [-Wunused-variable] int i,j,m,ngid; ^ ../../../src/mdlib/ns.c:2274:14: warning: unused variable 'i' [-Wunused-variable] int i,j,m,ngid; ^ In file included from ../../../src/mdlib/ns.c:54: At top level: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../src/mdlib/ns.c:51: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../src/mdlib/ns.c:50: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o stat.lo ../../../src/mdlib/stat.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/stat.c -fPIC -DPIC -o .libs/stat.o In file included from ../../../include/statutil.h:51, from ../../../src/mdlib/stat.c:63: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/mdlib/stat.c:53: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../src/mdlib/stat.c:49: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/mdlib/stat.c:49: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o tgroup.lo ../../../src/mdlib/tgroup.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/tgroup.c -fPIC -DPIC -o .libs/tgroup.o ../../../src/mdlib/tgroup.c: In function 'init_grptcstat': ../../../src/mdlib/tgroup.c:57:9: warning: unused variable 'j' [-Wunused-variable] int i,j; ^ At top level: ../../../src/mdlib/tgroup.c:141:13: warning: 'accumulate_ekin' defined but not used [-Wunused-function] static void accumulate_ekin(t_commrec *cr,t_grpopts *opts, ^~~~~~~~~~~~~~~ In file included from ../../../include/update.h:48, from ../../../src/mdlib/tgroup.c:51: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../src/mdlib/tgroup.c:48: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/mdlib/tgroup.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o minimize.lo ../../../src/mdlib/minimize.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/minimize.c -fPIC -DPIC -o .libs/minimize.o ../../../src/mdlib/minimize.c: In function 'get_f_norm_max': ../../../src/mdlib/minimize.c:153:14: warning: unused variable 'fmax2_0' [-Wunused-variable] real fmax2,fmax2_0,fam; ^~~~~~~ ../../../src/mdlib/minimize.c: In function 'evaluate_energy': ../../../src/mdlib/minimize.c:573:12: warning: unused variable 'state' [-Wunused-variable] t_state *state; ^~~~~ ../../../src/mdlib/minimize.c: In function 'do_cg': ../../../src/mdlib/minimize.c:813:10: warning: unused variable 'terminate' [-Wunused-variable] real terminate=0; ^~~~~~~~~ ../../../src/mdlib/minimize.c:798:26: warning: unused variable 'sum' [-Wunused-variable] double gpa,gpb,gpc,tmp,sum[2],minstep; ^~~ ../../../src/mdlib/minimize.c:797:28: warning: unused variable 'sfm' [-Wunused-variable] rvec *f_global,*p,*sf,*sfm; ^~~ ../../../src/mdlib/minimize.c: In function 'do_lbfgs': ../../../src/mdlib/minimize.c:1329:10: warning: unused variable 'terminate' [-Wunused-variable] real terminate; ^~~~~~~~~ ../../../src/mdlib/minimize.c:1320:20: warning: variable 'first' set but not used [-Wunused-but-set-variable] bool converged,first; ^~~~~ ../../../src/mdlib/minimize.c: In function 'do_steep': ../../../src/mdlib/minimize.c:1957:10: warning: unused variable 'terminate' [-Wunused-variable] real terminate=0; ^~~~~~~~~ ../../../src/mdlib/minimize.c:1946:16: warning: unused variable 'dvdlambda' [-Wunused-variable] real ustep,dvdlambda,fnormn; ^~~~~~~~~ ../../../src/mdlib/minimize.c:1945:19: warning: unused variable 'constepsize' [-Wunused-variable] real stepsize,constepsize; ^~~~~~~~~~~ ../../../src/mdlib/minimize.c: In function 'do_nm': ../../../src/mdlib/minimize.c:2163:22: warning: unused variable 'fmax' [-Wunused-variable] real fnorm,fmax; ^~~~ ../../../src/mdlib/minimize.c:2163:16: warning: unused variable 'fnorm' [-Wunused-variable] real fnorm,fmax; ^~~~~ ../../../src/mdlib/minimize.c:2151:16: warning: unused variable 'nfmax' [-Wunused-variable] int nfmax,count; ^~~~~ ../../../src/mdlib/minimize.c:2149:16: warning: unused variable 'bNS' [-Wunused-variable] bool bNS; ^~~ ../../../src/mdlib/minimize.c:2148:18: warning: variable 'lambda' set but not used [-Wunused-but-set-variable] real t,lambda,t0,lam0; ^~~~~~ ../../../src/mdlib/minimize.c: In function 'do_tpi': ../../../src/mdlib/minimize.c:2419:18: warning: unused variable 'end' [-Wunused-variable] int i,start,end; ^~~ ../../../src/mdlib/minimize.c:2419:12: warning: unused variable 'start' [-Wunused-variable] int i,start,end; ^~~~~ ../../../src/mdlib/minimize.c:2404:15: warning: unused variable 'TPI' [-Wunused-variable] const char *TPI="Test Particle Insertion"; ^~~ At top level: ../../../src/mdlib/minimize.c:515:13: warning: 'do_x_sub' defined but not used [-Wunused-function] static void do_x_sub(t_commrec *cr,int n,rvec *x1,rvec *x2,real a,rvec *f) ^~~~~~~~ ../../../src/mdlib/minimize.c:493:13: warning: 'do_x_step' defined but not used [-Wunused-function] static void do_x_step(t_commrec *cr,int n,rvec *x1,real a,rvec *f,rvec *x2) ^~~~~~~~~ In file included from ../../../include/pme.h:46, from ../../../src/mdlib/minimize.c:83: ../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function] static t_complex cdiv(t_complex teller,t_complex noemer) ^~~~ ../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function] static t_complex csub(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function] static t_complex cadd(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function] static t_complex rcexp(real r) ^~~~~ ../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable] static t_complex cnul = { 0.0, 0.0 }; ^~~~ In file included from ../../../include/statutil.h:51, from ../../../src/mdlib/minimize.c:63: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../include/pull.h:44, from ../../../include/update.h:49, from ../../../src/mdlib/minimize.c:59: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../include/pull.h:44, from ../../../include/update.h:49, from ../../../src/mdlib/minimize.c:59: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/mdlib/minimize.c:47: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o tables.lo ../../../src/mdlib/tables.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/tables.c -fPIC -DPIC -o .libs/tables.o ../../../src/mdlib/tables.c: In function 'done_tabledata': ../../../src/mdlib/tables.c:470:7: warning: unused variable 'i' [-Wunused-variable] int i; ^ ../../../src/mdlib/tables.c: In function 'make_tables': ../../../src/mdlib/tables.c:835:17: warning: unused variable 'j' [-Wunused-variable] int i,j,k,nx,nx0,tabsel[etiNR]; ^ ../../../src/mdlib/tables.c: In function 'make_bonded_table': ../../../src/mdlib/tables.c:950:10: warning: variable 'start' set but not used [-Wunused-but-set-variable] double start; ^~~~~ At top level: ../../../src/mdlib/tables.c:155:13: warning: 'splint' defined but not used [-Wunused-function] static void splint(real xa[],real ya[],real y2a[], ^~~~~~ In file included from ../../../src/mdlib/tables.c:51: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../src/mdlib/tables.c:47: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/mdlib/tables.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sim_util.lo ../../../src/mdlib/sim_util.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/sim_util.c -fPIC -DPIC -o .libs/sim_util.o ../../../src/mdlib/sim_util.c: In function 'calc_virial': ../../../src/mdlib/sim_util.c:250:10: warning: unused variable 'virtest' [-Wunused-variable] tensor virtest; ^~~~~~~ ../../../src/mdlib/sim_util.c:249:9: warning: unused variable 'j' [-Wunused-variable] int i,j; ^ ../../../src/mdlib/sim_util.c: In function 'do_force': ../../../src/mdlib/sim_util.c:357:24: warning: unused variable 'cycles_pme' [-Wunused-variable] float cycles_ppdpme,cycles_pme,cycles_force; ^~~~~~~~~~ ../../../src/mdlib/sim_util.c:355:10: warning: unused variable 'e' [-Wunused-variable] real e,v,dvdl; ^ ../../../src/mdlib/sim_util.c:354:10: warning: unused variable 'boxs' [-Wunused-variable] matrix boxs; ^~~~ ../../../src/mdlib/sim_util.c:353:57: warning: unused variable 'bBS' [-Wunused-variable] bool bSepDVDL,bStateChanged,bNS,bFillGrid,bCalcCGCM,bBS,bDoForces; ^~~ ../../../src/mdlib/sim_util.c:348:15: warning: unused variable 'box_size' [-Wunused-variable] static rvec box_size; ^~~~~~~~ ../../../src/mdlib/sim_util.c: In function 'calc_enervirdiff': ../../../src/mdlib/sim_util.c:823:13: warning: variable 'r1' set but not used [-Wunused-but-set-variable] double r0,r1,r,rc3,rc9,ea,eb,ec,pa,pb,pc,pd; ^~ ../../../src/mdlib/sim_util.c: In function 'init_md': ../../../src/mdlib/sim_util.c:1222:13: warning: unused variable 'mod' [-Wunused-variable] real tmpt,mod; ^~~ ../../../src/mdlib/sim_util.c:1222:8: warning: unused variable 'tmpt' [-Wunused-variable] real tmpt,mod; ^~~~ ../../../src/mdlib/sim_util.c:1221:12: warning: unused variable 'n' [-Wunused-variable] int i,j,n; ^ ../../../src/mdlib/sim_util.c:1221:10: warning: unused variable 'j' [-Wunused-variable] int i,j,n; ^ At top level: ../../../src/mdlib/sim_util.c:348:15: warning: 'box_size' defined but not used [-Wunused-variable] static rvec box_size; ^~~~~~~~ In file included from ../../../src/mdlib/sim_util.c:78: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/pme.h:46, from ../../../src/mdlib/sim_util.c:68: ../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function] static t_complex cdiv(t_complex teller,t_complex noemer) ^~~~ ../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function] static t_complex csub(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function] static t_complex cadd(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function] static t_complex rcexp(real r) ^~~~~ ../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable] static t_complex cnul = { 0.0, 0.0 }; ^~~~ In file included from ../../../src/mdlib/sim_util.c:57: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/mdlib/sim_util.c:57: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o shellfc.lo ../../../src/mdlib/shellfc.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/shellfc.c -fPIC -DPIC -o .libs/shellfc.o ../../../src/mdlib/shellfc.c: In function 'predict_shells': ../../../src/mdlib/shellfc.c:115:18: warning: unused variable 'dt_3' [-Wunused-variable] real dt_1,dt_2,dt_3,fudge,tm,m1,m2,m3; ^~~~ ../../../src/mdlib/shellfc.c:115:13: warning: unused variable 'dt_2' [-Wunused-variable] real dt_1,dt_2,dt_3,fudge,tm,m1,m2,m3; ^~~~ ../../../src/mdlib/shellfc.c: In function 'init_shell_flexcon': ../../../src/mdlib/shellfc.c:197:32: warning: unused variable 'mt' [-Wunused-variable] int i,j,nmol,type,mb,mt,a_offset,cg,mol,ftype,nra; ^~ ../../../src/mdlib/shellfc.c:197:19: warning: unused variable 'nmol' [-Wunused-variable] int i,j,nmol,type,mb,mt,a_offset,cg,mol,ftype,nra; ^~~~ ../../../src/mdlib/shellfc.c: In function 'init_adir': ../../../src/mdlib/shellfc.c:694:12: warning: unused variable 'dx' [-Wunused-variable] rvec p,dx; ^~ ../../../src/mdlib/shellfc.c:694:10: warning: unused variable 'p' [-Wunused-variable] rvec p,dx; ^ ../../../src/mdlib/shellfc.c:691:13: warning: unused variable 'scale' [-Wunused-variable] real dt,scale; ^~~~~ ../../../src/mdlib/shellfc.c:690:16: warning: unused variable 'gt' [-Wunused-variable] int gf,ga,gt; ^~ ../../../src/mdlib/shellfc.c:690:13: warning: unused variable 'ga' [-Wunused-variable] int gf,ga,gt; ^~ ../../../src/mdlib/shellfc.c:690:10: warning: unused variable 'gf' [-Wunused-variable] int gf,ga,gt; ^~ ../../../src/mdlib/shellfc.c: In function 'relax_shell_flexcon': ../../../src/mdlib/shellfc.c:776:19: warning: unused variable 'g' [-Wunused-variable] int nflexcon,g,number_steps,d,Min=0,count=0; ^ ../../../src/mdlib/shellfc.c:772:10: warning: unused variable 'cbuf' [-Wunused-variable] char cbuf[56]; ^~~~ ../../../src/mdlib/shellfc.c:771:19: warning: unused variable 'xiS' [-Wunused-variable] real ftol,xiH,xiS,dum=0; ^~~ ../../../src/mdlib/shellfc.c:771:15: warning: unused variable 'xiH' [-Wunused-variable] real ftol,xiH,xiS,dum=0; ^~~ ../../../src/mdlib/shellfc.c:769:10: warning: unused variable 'dx' [-Wunused-variable] rvec dx; ^~ In file included from ../../../src/mdlib/shellfc.c:55: At top level: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/mdrun.h:50, from ../../../src/mdlib/shellfc.c:45: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../src/mdlib/shellfc.c:43: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/mdlib/shellfc.c:43: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o vcm.lo ../../../src/mdlib/vcm.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/vcm.c -fPIC -DPIC -o .libs/vcm.o ../../../src/mdlib/vcm.c: In function 'calc_vcm_grp': ../../../src/mdlib/vcm.c:122:28: warning: unused variable 'zz' [-Wunused-variable] real m0,xx,xy,xz,yy,yz,zz; ^~ ../../../src/mdlib/vcm.c:122:25: warning: unused variable 'yz' [-Wunused-variable] real m0,xx,xy,xz,yy,yz,zz; ^~ ../../../src/mdlib/vcm.c:122:22: warning: unused variable 'yy' [-Wunused-variable] real m0,xx,xy,xz,yy,yz,zz; ^~ ../../../src/mdlib/vcm.c:122:19: warning: unused variable 'xz' [-Wunused-variable] real m0,xx,xy,xz,yy,yz,zz; ^~ ../../../src/mdlib/vcm.c:122:16: warning: unused variable 'xy' [-Wunused-variable] real m0,xx,xy,xz,yy,yz,zz; ^~ ../../../src/mdlib/vcm.c:122:13: warning: unused variable 'xx' [-Wunused-variable] real m0,xx,xy,xz,yy,yz,zz; ^~ ../../../src/mdlib/vcm.c: In function 'do_stopcm_grp': ../../../src/mdlib/vcm.c:171:11: warning: unused variable 'tm_1' [-Wunused-variable] real tm,tm_1; ^~~~ ../../../src/mdlib/vcm.c:171:8: warning: unused variable 'tm' [-Wunused-variable] real tm,tm_1; ^~ ../../../src/mdlib/vcm.c:170:12: warning: unused variable 'm' [-Wunused-variable] int i,g,m; ^ ../../../src/mdlib/vcm.c: In function 'check_cm_grp': ../../../src/mdlib/vcm.c:250:14: warning: unused variable 'Tcm' [-Wunused-variable] tensor Icm,Tcm; ^~~ In file included from ../../../src/mdlib/vcm.c:43: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/mdlib/vcm.c:43: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o wall.lo ../../../src/mdlib/wall.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/wall.c -fPIC -DPIC -o .libs/wall.o ../../../src/mdlib/wall.c: In function 'do_walls': ../../../src/mdlib/wall.c:107:47: warning: unused variable 'Heps' [-Wunused-variable] real tabscale,*VFtab,rt,eps,eps2,Yt,Ft,Geps,Heps,Heps2,Fp,VV,FF; ^~~~ ../../../src/mdlib/wall.c:103:50: warning: variable 'Fwall' set but not used [-Wunused-but-set-variable] real *nbfp,lamfac,fac_d[2],fac_r[2],Cd,Cr,Vtot,Fwall[2]; ^~~~~ In file included from ../../../src/mdlib/wall.c:48: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/mdlib/wall.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/mdlib/wall.c:45: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o wnblist.lo ../../../src/mdlib/wnblist.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/wnblist.c -fPIC -DPIC -o .libs/wnblist.o ../../../src/mdlib/wnblist.c: In function 'read_nblist': ../../../src/mdlib/wnblist.c:135:27: warning: unused variable 'icmp' [-Wunused-variable] int i,ii,j,nnbl,full,icmp,nri,isolv; ^~~~ ../../../src/mdlib/wnblist.c:135:22: warning: unused variable 'full' [-Wunused-variable] int i,ii,j,nnbl,full,icmp,nri,isolv; ^~~~ ../../../src/mdlib/wnblist.c:135:17: warning: unused variable 'nnbl' [-Wunused-variable] int i,ii,j,nnbl,full,icmp,nri,isolv; ^~~~ ../../../src/mdlib/wnblist.c:134:26: warning: unused variable 'b2' [-Wunused-variable] char buf[256],b1[32],b2[32],solv[256],il_code[256]; ^~ ../../../src/mdlib/wnblist.c:134:19: warning: unused variable 'b1' [-Wunused-variable] char buf[256],b1[32],b2[32],solv[256],il_code[256]; ^~ ../../../src/mdlib/wnblist.c:133:10: warning: unused variable 'bNL' [-Wunused-variable] bool bNL; ^~~ In file included from ../../../src/mdlib/wnblist.c:44: At top level: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_parallel_3dfft.lo ../../../src/mdlib/gmx_parallel_3dfft.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/gmx_parallel_3dfft.c -fPIC -DPIC -o .libs/gmx_parallel_3dfft.o make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o update.lo ../../../src/mdlib/update.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/update.c -fPIC -DPIC -o .libs/update.o ../../../src/mdlib/update.c: In function 'update': ../../../src/mdlib/update.c:771:39: warning: unused variable 'g' [-Wunused-variable] int start,homenr,i,n,m,g; ^ ../../../src/mdlib/update.c:770:20: warning: variable 'dt_1' set but not used [-Wunused-but-set-variable] real dt_1; ^~~~ In file included from ../../../src/mdlib/update.c:62: At top level: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/update.h:48, from ../../../src/mdlib/update.c:53: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../src/mdlib/update.c:50: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/mdlib/update.c:50: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_fft.lo ../../../src/mdlib/gmx_fft.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/gmx_fft.c -fPIC -DPIC -o .libs/gmx_fft.o In file included from ../../../src/mdlib/gmx_fft.c:30: ../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function] static t_complex cdiv(t_complex teller,t_complex noemer) ^~~~ ../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function] static t_complex csub(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function] static t_complex cadd(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function] static t_complex rcexp(real r) ^~~~~ ../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable] static t_complex cnul = { 0.0, 0.0 }; ^~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o csettle.lo ../../../src/mdlib/csettle.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/csettle.c -fPIC -DPIC -o .libs/csettle.o ../../../src/mdlib/csettle.c: In function 'xshake': ../../../src/mdlib/csettle.c:183:39: warning: unused variable 'conv' [-Wunused-variable] int i,ll,ii,jj,l3,ix,iy,iz,jx,jy,jz,conv; ^~~~ ../../../src/mdlib/csettle.c: In function 'csettle': ../../../src/mdlib/csettle.c:298:10: warning: unused variable 'shakeret' [-Wunused-variable] int i, shakeret, ow1, hw2, hw3; ^~~~~~~~ In file included from ../../../src/mdlib/csettle.c:42: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/mdlib/csettle.c:42: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_wallcycle.lo ../../../src/mdlib/gmx_wallcycle.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/gmx_wallcycle.c -fPIC -DPIC -o .libs/gmx_wallcycle.o ../../../src/mdlib/gmx_wallcycle.c: In function 'wallcycle_sum': ../../../src/mdlib/gmx_wallcycle.c:163:31: warning: unused variable 'buf_all' [-Wunused-variable] double buf[ewcNR],*cyc_all,*buf_all; ^~~~~~~ ../../../src/mdlib/gmx_wallcycle.c:163:22: warning: unused variable 'cyc_all' [-Wunused-variable] double buf[ewcNR],*cyc_all,*buf_all; ^~~~~~~ ../../../src/mdlib/gmx_wallcycle.c:163:10: warning: unused variable 'buf' [-Wunused-variable] double buf[ewcNR],*cyc_all,*buf_all; ^~~ At top level: ../../../src/mdlib/gmx_wallcycle.c:59:26: warning: 'wc_barrier' defined but not used [-Wunused-variable] static bool wc_barrier=FALSE; ^~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o qmmm.lo ../../../src/mdlib/qmmm.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/qmmm.c -fPIC -DPIC -o .libs/qmmm.o ../../../src/mdlib/qmmm.c: In function 'update_QMMMrec': ../../../src/mdlib/qmmm.c:725:6: warning: unused variable 'MMatoms' [-Wunused-variable] *MMatoms; ^~~~~~~ ../../../src/mdlib/qmmm.c:721:17: warning: variable 'QMMMlist_lr' set but not used [-Wunused-but-set-variable] QMMMlist_sr,QMMMlist_lr; ^~~~~~~~~~~ At top level: ../../../src/mdlib/qmmm.c:131:12: warning: 'int_comp' defined but not used [-Wunused-function] static int int_comp(const void *a,const void *b){ ^~~~~~~~ In file included from ../../../src/mdlib/qmmm.c:60: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/mdlib/qmmm.c:49: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../src/mdlib/qmmm.c:48: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/mdlib/qmmm.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_fft_fftw3.lo ../../../src/mdlib/gmx_fft_fftw3.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/gmx_fft_fftw3.c -fPIC -DPIC -o .libs/gmx_fft_fftw3.o In file included from ../../../include/gmx_fft.h:41, from ../../../src/mdlib/gmx_fft_fftw3.c:27: ../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function] static t_complex cdiv(t_complex teller,t_complex noemer) ^~~~ ../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function] static t_complex csub(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function] static t_complex cadd(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function] static t_complex rcexp(real r) ^~~~~ ../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable] static t_complex cnul = { 0.0, 0.0 }; ^~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o domdec.lo ../../../src/mdlib/domdec.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/domdec.c -fPIC -DPIC -o .libs/domdec.o ../../../src/mdlib/domdec.c: In function 'dd_move_cellx': ../../../src/mdlib/domdec.c:785:41: warning: unused variable 'k' [-Wunused-variable] int d,d1,dim,dim1,pos,buf_size,i,j,k,p,npulse; ^ ../../../src/mdlib/domdec.c:785:19: warning: unused variable 'dim1' [-Wunused-variable] int d,d1,dim,dim1,pos,buf_size,i,j,k,p,npulse; ^~~~ ../../../src/mdlib/domdec.c: In function 'dd_collect_vec': ../../../src/mdlib/domdec.c:1212:11: warning: unused variable 'buf' [-Wunused-variable] rvec *buf=NULL; ^~~ ../../../src/mdlib/domdec.c:1211:18: warning: unused variable 'nalloc' [-Wunused-variable] int n,i,c,a,nalloc=0; ^~~~~~ ../../../src/mdlib/domdec.c:1211:16: warning: unused variable 'a' [-Wunused-variable] int n,i,c,a,nalloc=0; ^ ../../../src/mdlib/domdec.c:1211:14: warning: unused variable 'c' [-Wunused-variable] int n,i,c,a,nalloc=0; ^ ../../../src/mdlib/domdec.c:1211:12: warning: unused variable 'i' [-Wunused-variable] int n,i,c,a,nalloc=0; ^ ../../../src/mdlib/domdec.c:1211:10: warning: unused variable 'n' [-Wunused-variable] int n,i,c,a,nalloc=0; ^ ../../../src/mdlib/domdec.c:1210:26: warning: unused variable 'ma' [-Wunused-variable] gmx_domdec_master_t *ma; ^~ ../../../src/mdlib/domdec.c: In function 'dd_distribute_vec_scatterv': ../../../src/mdlib/domdec.c:1427:18: warning: unused variable 'nalloc' [-Wunused-variable] int n,i,c,a,nalloc=0; ^~~~~~ ../../../src/mdlib/domdec.c: In function 'gmx_ddcoord2pmeindex': ../../../src/mdlib/domdec.c:1805:28: warning: unused variable 'nc' [-Wunused-variable] ivec coords,coords_pme,nc; ^~ ../../../src/mdlib/domdec.c:1805:17: warning: unused variable 'coords_pme' [-Wunused-variable] ivec coords,coords_pme,nc; ^~~~~~~~~~ ../../../src/mdlib/domdec.c: In function 'dd_simnode2pmenode': ../../../src/mdlib/domdec.c:1874:16: warning: unused variable 'coord_pme' [-Wunused-variable] ivec coord,coord_pme; ^~~~~~~~~ ../../../src/mdlib/domdec.c:1874:10: warning: unused variable 'coord' [-Wunused-variable] ivec coord,coord_pme; ^~~~~ ../../../src/mdlib/domdec.c: In function 'receive_vir_ener': ../../../src/mdlib/domdec.c:2005:30: warning: unused variable 'rank' [-Wunused-variable] int pmenode,coords[DIM],rank; ^~~~ ../../../src/mdlib/domdec.c:2005:18: warning: unused variable 'coords' [-Wunused-variable] int pmenode,coords[DIM],rank; ^~~~~~ ../../../src/mdlib/domdec.c: In function 'make_dd_indices': ../../../src/mdlib/domdec.c:2107:11: warning: variable 'bLocalCG' set but not used [-Wunused-but-set-variable] char *bLocalCG; ^~~~~~~~ ../../../src/mdlib/domdec.c: In function 'check_bLocalCG': ../../../src/mdlib/domdec.c:2162:9: warning: unused variable 'ncg' [-Wunused-variable] int ncg,i,ngl,nerr; ^~~ ../../../src/mdlib/domdec.c: In function 'dd_redistribute_cg': ../../../src/mdlib/domdec.c:3706:49: warning: unused variable 'cell_d' [-Wunused-variable] int c,i,cg,k,k0,k1,d,dim,dim2,dir,d2,d3,d4,cell_d; ^~~~~~ ../../../src/mdlib/domdec.c:3706:46: warning: unused variable 'd4' [-Wunused-variable] int c,i,cg,k,k0,k1,d,dim,dim2,dir,d2,d3,d4,cell_d; ^~ ../../../src/mdlib/domdec.c: In function 'get_load_distribution': ../../../src/mdlib/domdec.c:4326:16: warning: unused variable 'cid' [-Wunused-variable] int d,dim,cid,i,pos; ^~~ ../../../src/mdlib/domdec.c: In function 'setup_dd_grid': ../../../src/mdlib/domdec.c:4781:10: warning: unused variable 'bZYX' [-Wunused-variable] bool bZYX; ^~~~ ../../../src/mdlib/domdec.c: In function 'make_pp_communicator': ../../../src/mdlib/domdec.c:4944:10: warning: unused variable 'periods' [-Wunused-variable] ivec periods; ^~~~~~~ ../../../src/mdlib/domdec.c:4943:18: warning: unused variable 'buf' [-Wunused-variable] int i,rank,*buf; ^~~ ../../../src/mdlib/domdec.c:4943:12: warning: unused variable 'rank' [-Wunused-variable] int i,rank,*buf; ^~~~ ../../../src/mdlib/domdec.c:4943:10: warning: unused variable 'i' [-Wunused-variable] int i,rank,*buf; ^ ../../../src/mdlib/domdec.c:4942:24: warning: variable 'comm' set but not used [-Wunused-but-set-variable] gmx_domdec_comm_t *comm; ^~~~ ../../../src/mdlib/domdec.c: In function 'receive_ddindex2simnodeid': ../../../src/mdlib/domdec.c:5069:11: warning: unused variable 'buf' [-Wunused-variable] int *buf; ^~~ ../../../src/mdlib/domdec.c:5068:24: warning: variable 'comm' set but not used [-Wunused-but-set-variable] gmx_domdec_comm_t *comm; ^~~~ ../../../src/mdlib/domdec.c: In function 'split_communicator': ../../../src/mdlib/domdec.c:5131:10: warning: unused variable 'periods' [-Wunused-variable] ivec periods; ^~~~~~~ ../../../src/mdlib/domdec.c:5129:12: warning: unused variable 'rank' [-Wunused-variable] int i,rank; ^~~~ ../../../src/mdlib/domdec.c: In function 'check_dlb_support': ../../../src/mdlib/domdec.c:5598:9: warning: label 'edlbYES' defined but not used [-Wunused-label] edlbYES: ^~~~~~~ ../../../src/mdlib/domdec.c:5594:9: warning: label 'edlbAUTO' defined but not used [-Wunused-label] edlbAUTO: ^~~~~~~~ ../../../src/mdlib/domdec.c:5592:9: warning: label 'edlbNO' defined but not used [-Wunused-label] edlbNO: ^~~~~~ ../../../src/mdlib/domdec.c:5553:19: warning: unused variable 'dd' [-Wunused-variable] gmx_domdec_t *dd; ^~ ../../../src/mdlib/domdec.c: In function 'init_domain_decomposition': ../../../src/mdlib/domdec.c:5652:14: warning: unused variable 'j' [-Wunused-variable] int d,i,j; ^ ../../../src/mdlib/domdec.c:5652:12: warning: unused variable 'i' [-Wunused-variable] int d,i,j; ^ ../../../src/mdlib/domdec.c:5652:10: warning: unused variable 'd' [-Wunused-variable] int d,i,j; ^ ../../../src/mdlib/domdec.c: In function 'turn_on_dlb': ../../../src/mdlib/domdec.c:6010:10: warning: unused variable 'buf' [-Wunused-variable] char buf[STRLEN]; ^~~ ../../../src/mdlib/domdec.c: In function 'dd_init_bondeds': ../../../src/mdlib/domdec.c:6086:10: warning: unused variable 'd' [-Wunused-variable] int d; ^ ../../../src/mdlib/domdec.c:6085:10: warning: unused variable 'bBondComm' [-Wunused-variable] bool bBondComm; ^~~~~~~~~ ../../../src/mdlib/domdec.c: In function 'setup_dd_communication': ../../../src/mdlib/domdec.c:6486:64: warning: unused variable 'inv_ncg' [-Wunused-variable] real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh; ^~~~~~~ ../../../src/mdlib/domdec.c:6486:58: warning: unused variable 'r2inc' [-Wunused-variable] real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh; ^~~~~ ../../../src/mdlib/domdec.c:6486:47: warning: unused variable 'r_1' [-Wunused-variable] real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh; ^~~ ../../../src/mdlib/domdec.c:6486:43: warning: unused variable 'r_0' [-Wunused-variable] real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh; ^~~ ../../../src/mdlib/domdec.c:6486:23: warning: unused variable 'r_scomm2' [-Wunused-variable] real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh; ^~~~~~~~ ../../../src/mdlib/domdec.c:6486:10: warning: unused variable 'r_mb' [-Wunused-variable] real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh; ^~~~ ../../../src/mdlib/domdec.c: In function 'dd_partition_system': ../../../src/mdlib/domdec.c:7481:12: warning: unused variable 'j' [-Wunused-variable] int i,j,n,cg0=0,ncg_home_old=-1; ^ At top level: ../../../src/mdlib/domdec.c:1781:13: warning: 'dd_pmenodes' defined but not used [-Wunused-function] static int *dd_pmenodes(t_commrec *cr) ^~~~~~~~~~~ In file included from ../../../include/mdrun.h:50, from ../../../src/mdlib/domdec.c:44: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../include/pme.h:46, from ../../../src/mdlib/domdec.c:41: ../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function] static t_complex cdiv(t_complex teller,t_complex noemer) ^~~~ ../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function] static t_complex csub(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function] static t_complex cadd(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function] static t_complex rcexp(real r) ^~~~~ ../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable] static t_complex cnul = { 0.0, 0.0 }; ^~~~ In file included from ../../../src/mdlib/domdec.c:31: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/mdlib/domdec.c:31: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o clincs.lo ../../../src/mdlib/clincs.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/clincs.c -fPIC -DPIC -o .libs/clincs.o ../../../src/mdlib/clincs.c: In function 'do_lincsp': ../../../src/mdlib/clincs.c:189:54: warning: unused variable 'lam' [-Wunused-variable] real tmp0,tmp1,tmp2,im1,im2,mvb,rlen,len,wfac,lam; ^~~ ../../../src/mdlib/clincs.c:189:49: warning: unused variable 'wfac' [-Wunused-variable] real tmp0,tmp1,tmp2,im1,im2,mvb,rlen,len,wfac,lam; ^~~~ ../../../src/mdlib/clincs.c:189:45: warning: unused variable 'len' [-Wunused-variable] real tmp0,tmp1,tmp2,im1,im2,mvb,rlen,len,wfac,lam; ^~~ ../../../src/mdlib/clincs.c:189:40: warning: unused variable 'rlen' [-Wunused-variable] real tmp0,tmp1,tmp2,im1,im2,mvb,rlen,len,wfac,lam; ^~~~ ../../../src/mdlib/clincs.c: In function 'set_lincs': ../../../src/mdlib/clincs.c:764:14: warning: variable 'bLocal' set but not used [-Wunused-but-set-variable] bool bLocal; ^~~~~~ ../../../src/mdlib/clincs.c: In function 'constrain_lincs': ../../../src/mdlib/clincs.c:1084:25: warning: unused variable 'error' [-Wunused-variable] int i,warn,p_imax,error; ^~~~~ At top level: ../../../src/mdlib/clincs.c:1034:13: warning: 'dump_conf' defined but not used [-Wunused-function] static void dump_conf(gmx_domdec_t *dd,struct gmx_lincsdata *li, ^~~~~~~~~ In file included from ../../../include/mdrun.h:50, from ../../../src/mdlib/clincs.c:50: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../src/mdlib/clincs.c:47: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/mdlib/clincs.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/mdlib/clincs.c:45: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o qm_gaussian.lo ../../../src/mdlib/qm_gaussian.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/qm_gaussian.c -fPIC -DPIC -o .libs/qm_gaussian.o ../../../src/mdlib/qm_gaussian.c: In function 'init_gaussian': ../../../src/mdlib/qm_gaussian.c:73:6: warning: unused variable 'rffile' [-Wunused-variable] *rffile=NULL,*out=NULL; ^~~~~~ In file included from ../../../src/mdlib/qm_gaussian.c:60: At top level: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/mdlib/qm_gaussian.c:49: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../src/mdlib/qm_gaussian.c:48: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/mdlib/qm_gaussian.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o vsite.lo ../../../src/mdlib/vsite.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/vsite.c -fPIC -DPIC -o .libs/vsite.o ../../../src/mdlib/vsite.c: In function 'constr_vsiten': ../../../src/mdlib/vsite.c:437:8: warning: unused variable 'xs' [-Wunused-variable] rvec xs,x1,dx; ^~ ../../../src/mdlib/vsite.c: In function 'construct_vsites': ../../../src/mdlib/vsite.c:484:25: warning: unused variable 'rtmp' [-Wunused-variable] rvec reftmp,vtmp,rtmp; ^~~~ ../../../src/mdlib/vsite.c:484:20: warning: unused variable 'vtmp' [-Wunused-variable] rvec reftmp,vtmp,rtmp; ^~~~ ../../../src/mdlib/vsite.c:484:13: warning: unused variable 'reftmp' [-Wunused-variable] rvec reftmp,vtmp,rtmp; ^~~~~~ ../../../src/mdlib/vsite.c:478:19: warning: unused variable 'ii' [-Wunused-variable] int i,inc,ii,nra,nr,tp,ftype; ^~ ../../../src/mdlib/vsite.c: In function 'spread_vsite2': ../../../src/mdlib/vsite.c:655:11: warning: unused variable 'b' [-Wunused-variable] real b; ^ ../../../src/mdlib/vsite.c: In function 'spread_vsite3FD': ../../../src/mdlib/vsite.c:770:23: warning: unused variable 'd' [-Wunused-variable] int svi,sji,skj,d; ^ ../../../src/mdlib/vsite.c:767:14: warning: unused variable 'fz' [-Wunused-variable] real fx,fy,fz,c,invl,fproj,a1; ^~ ../../../src/mdlib/vsite.c:767:11: warning: unused variable 'fy' [-Wunused-variable] real fx,fy,fz,c,invl,fproj,a1; ^~ ../../../src/mdlib/vsite.c:767:8: warning: unused variable 'fx' [-Wunused-variable] real fx,fy,fz,c,invl,fproj,a1; ^~ ../../../src/mdlib/vsite.c: In function 'spread_vsite_f': ../../../src/mdlib/vsite.c:1255:19: warning: unused variable 'm' [-Wunused-variable] int i,inc,m,nra,nr,tp,ftype; ^ ../../../src/mdlib/vsite.c: In function 'count_intercg_vsite': ../../../src/mdlib/vsite.c:1409:11: warning: unused variable 'mt' [-Wunused-variable] int mb,mt,ftype,nral,i,cg,a; ^~ ../../../src/mdlib/vsite.c: In function 'get_vsite_pbc': ../../../src/mdlib/vsite.c:1448:38: warning: unused variable 'cg_c' [-Wunused-variable] int ftype,nral,i,j,vsi,vsite,cg_v,cg_c,a,nc3=0; ^~~~ ../../../src/mdlib/vsite.c: In function 'init_vsite': ../../../src/mdlib/vsite.c:1559:13: warning: unused variable 'cg' [-Wunused-variable] int *a2cg,cg; ^~ In file included from ../../../src/mdlib/vsite.c:46: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/mdlib/vsite.c:46: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -version-info 5:0:0 -lgslcblas -o libmd_d.la -rpath /usr/lib64 calcmu.lo calcvir.lo constr.lo coupling.lo domdec.lo domdec_con.lo domdec_network.lo domdec_setup.lo domdec_top.lo ebin.lo edsam.lo ewald.lo fftgrid.lo force.lo ghat.lo init.lo mdatom.lo mdebin.lo minimize.lo mvxvf.lo ns.lo nsgrid.lo perf_est.lo pme.lo pme_pp.lo pppm.lo partdec.lo pull.lo pullutil.lo rf_util.lo shakef.lo sim_util.lo shellfc.lo stat.lo tables.lo tgroup.lo update.lo vcm.lo vsite.lo wall.lo wnblist.lo csettle.lo clincs.lo qmmm.lo gmx_fft.lo gmx_parallel_3dfft.lo gmx_wallcycle.lo qm_gaussian.lo gmx_fft_fftw3.lo ../gmxlib/libgmx_d.la -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath x86_64-alt-linux-gcc -shared .libs/calcmu.o .libs/calcvir.o .libs/constr.o .libs/coupling.o .libs/domdec.o .libs/domdec_con.o .libs/domdec_network.o .libs/domdec_setup.o .libs/domdec_top.o .libs/ebin.o .libs/edsam.o .libs/ewald.o .libs/fftgrid.o .libs/force.o .libs/ghat.o .libs/init.o .libs/mdatom.o .libs/mdebin.o .libs/minimize.o .libs/mvxvf.o .libs/ns.o .libs/nsgrid.o .libs/perf_est.o .libs/pme.o .libs/pme_pp.o .libs/pppm.o .libs/partdec.o .libs/pull.o .libs/pullutil.o .libs/rf_util.o .libs/shakef.o .libs/sim_util.o .libs/shellfc.o .libs/stat.o .libs/tables.o .libs/tgroup.o .libs/update.o .libs/vcm.o .libs/vsite.o .libs/wall.o .libs/wnblist.o .libs/csettle.o .libs/clincs.o .libs/qmmm.o .libs/gmx_fft.o .libs/gmx_parallel_3dfft.o .libs/gmx_wallcycle.o .libs/qm_gaussian.o .libs/gmx_fft_fftw3.o -lgslcblas ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wl,-soname -Wl,libmd_d.so.5 -o .libs/libmd_d.so.5.0.0 (cd .libs && rm -f libmd_d.so.5 && ln -s libmd_d.so.5.0.0 libmd_d.so.5) (cd .libs && rm -f libmd_d.so && ln -s libmd_d.so.5.0.0 libmd_d.so) creating libmd_d.la (cd .libs && rm -f libmd_d.la && ln -s ../libmd_d.la libmd_d.la) make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib' Making all in kernel make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o compute_io.lo ../../../src/kernel/compute_io.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/compute_io.c -fPIC -DPIC -o .libs/compute_io.o ../../../src/kernel/compute_io.c: In function 'compute_io': ../../../src/kernel/compute_io.c:49:53: warning: unused variable 'nfep' [-Wunused-variable] int nstx=0,nstv=0,nstf=0,nste=0,nstlog=0,nstxtc=0,nfep=0; ^~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o add_par.lo ../../../src/kernel/add_par.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/add_par.c -fPIC -DPIC -o .libs/add_par.o In file included from ../../../src/kernel/hackblock.h:41, from ../../../src/kernel/add_par.c:46: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/kernel/add_par.c:44: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o convparm.lo ../../../src/kernel/convparm.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/convparm.c -fPIC -DPIC -o .libs/convparm.o ../../../src/kernel/convparm.c: In function 'new_interaction_list': ../../../src/kernel/convparm.c:404:7: warning: unused variable 'i' [-Wunused-variable] int i; ^ ../../../src/kernel/convparm.c: In function 'convert_params': ../../../src/kernel/convparm.c:414:12: warning: unused variable 'j' [-Wunused-variable] int i,j,maxtypes,mt; ^ At top level: ../../../src/kernel/convparm.c:402:13: warning: 'new_interaction_list' defined but not used [-Wunused-function] static void new_interaction_list(t_ilist *ilist) ^~~~~~~~~~~~~~~~~~~~ In file included from ../../../src/kernel/topio.h:41, from ../../../src/kernel/convparm.c:48: ../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable] static const char *couple_lam[ecouplamNR+1] = { ^~~~~~~~~~ ../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable] static const char *constraints[eshNR+1] = { ^~~~~~~~~~~ In file included from ../../../src/kernel/readir.h:43, from ../../../src/kernel/topio.h:41, from ../../../src/kernel/convparm.c:48: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/readir.h:42, from ../../../src/kernel/topio.h:41, from ../../../src/kernel/convparm.c:48: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/kernel/convparm.c:44: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/convparm.c:44: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmxcpp.lo ../../../src/kernel/gmxcpp.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/gmxcpp.c -fPIC -DPIC -o .libs/gmxcpp.o ../../../src/kernel/gmxcpp.c: In function 'cpp_close_file': ../../../src/kernel/gmxcpp.c:453:7: warning: unused variable 'i' [-Wunused-variable] int i; ^ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gpp_bond_atomtype.lo ../../../src/kernel/gpp_bond_atomtype.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/gpp_bond_atomtype.c -fPIC -DPIC -o .libs/gpp_bond_atomtype.o make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gpp_atomtype.lo ../../../src/kernel/gpp_atomtype.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/gpp_atomtype.c -fPIC -DPIC -o .libs/gpp_atomtype.o In file included from ../../../src/kernel/topdirs.h:40, from ../../../src/kernel/gpp_atomtype.c:45: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o genhydro.lo ../../../src/kernel/genhydro.c mkdir .libs x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/genhydro.c -fPIC -DPIC -o .libs/genhydro.o In file included from ../../../src/kernel/hackblock.h:42, from ../../../src/kernel/genhydro.h:41, from ../../../src/kernel/genhydro.c:56: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/genhydro.h:40, from ../../../src/kernel/genhydro.c:56: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/kernel/genhydro.c:51: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/kernel/genhydro.c:50: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/genhydro.c:50: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/genhydro.c:46: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o h_db.lo ../../../src/kernel/h_db.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/h_db.c -fPIC -DPIC -o .libs/h_db.o ../../../src/kernel/h_db.c: In function 'dump_h_db': ../../../src/kernel/h_db.c:113:10: warning: unused variable 'j' [-Wunused-variable] int i,j,k; ^ In file included from ../../../src/kernel/hackblock.h:42, from ../../../src/kernel/h_db.h:41, from ../../../src/kernel/h_db.c:47: At top level: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/hackblock.h:41, from ../../../src/kernel/h_db.h:41, from ../../../src/kernel/h_db.c:47: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o grompp.o ../../../src/kernel/grompp.c ../../../src/kernel/grompp.c: In function 'new_status': ../../../src/kernel/grompp.c:300:3: warning: statement with no effect [-Wunused-value] mbs; ^~~ ../../../src/kernel/grompp.c: In function 'read_posres': ../../../src/kernel/grompp.c:478:10: warning: unused variable 'bFirst' [-Wunused-variable] bool bFirst = TRUE; ^~~~~~ ../../../src/kernel/grompp.c: In function 'gen_posres': ../../../src/kernel/grompp.c:604:9: warning: unused variable 'j' [-Wunused-variable] int i,j; ^ ../../../src/kernel/grompp.c:604:7: warning: unused variable 'i' [-Wunused-variable] int i,j; ^ ../../../src/kernel/grompp.c: In function 'main': ../../../src/kernel/grompp.c:769:16: warning: unused variable 'natoms' [-Wunused-variable] int natoms,nvsite,comb,mt; ^~~~~~ In file included from ../../../src/kernel/hackblock.h:41, from ../../../src/kernel/pdb2top.h:43, from ../../../src/kernel/add_par.h:41, from ../../../src/kernel/grompp.c:74: At top level: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/kernel/grompp.c:60: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/grompp.c:60: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/grompp.c:54: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/kernel/grompp.c:50: ../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable] static const char *couple_lam[ecouplamNR+1] = { ^~~~~~~~~~ ../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable] static const char *constraints[eshNR+1] = { ^~~~~~~~~~~ In file included from ../../../src/kernel/readir.h:43, from ../../../src/kernel/grompp.c:50: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/readir.h:42, from ../../../src/kernel/grompp.c:50: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ ../../../src/kernel/grompp.c: In function 'main': ../../../src/kernel/grompp.c:380:19: warning: '%s' directive writing up to 4095 bytes into a region of size between 4045 and 4055 [-Wformat-overflow=] sprintf(buf,"%d non-matching atom name%s\n" ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../src/kernel/grompp.c:856:14: new_status(fn,opt2fn_null("-pp",NFILE,fnm),opt2fn("-c",NFILE,fnm), ~~ ../../../src/kernel/grompp.c:381:25: note: format string is defined here "atom names from %s will be used\n" ^~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../src/kernel/grompp.c:46: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 89 or more bytes (assuming 4194) into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gen_ad.lo ../../../src/kernel/gen_ad.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/gen_ad.c -fPIC -DPIC -o .libs/gen_ad.o ../../../src/kernel/gen_ad.c: In function 'get_impropers': ../../../src/kernel/gen_ad.c:437:25: warning: unused variable 'r' [-Wunused-variable] int nidih,i,j,k,r,start,ninc,nalloc; ^ ../../../src/kernel/gen_ad.c:436:15: warning: unused variable 'hbidih' [-Wunused-variable] t_rbonded *hbidih; ^~~~~~ ../../../src/kernel/gen_ad.c:434:14: warning: unused variable 'a0' [-Wunused-variable] char *a0; ^~ ../../../src/kernel/gen_ad.c: In function 'clean_excls': ../../../src/kernel/gen_ad.c:576:26: warning: unused variable 'n' [-Wunused-variable] int i,j,j1,k,k1,l,l1,m,n,e; ^ ../../../src/kernel/gen_ad.c:576:24: warning: unused variable 'm' [-Wunused-variable] int i,j,j1,k,k1,l,l1,m,n,e; ^ ../../../src/kernel/gen_ad.c: In function 'generate_excls': ../../../src/kernel/gen_ad.c:618:28: warning: unused variable 'e' [-Wunused-variable] int i,j,j1,k,k1,l,l1,m,n,e,N; ^ ../../../src/kernel/gen_ad.c:618:24: warning: unused variable 'm' [-Wunused-variable] int i,j,j1,k,k1,l,l1,m,n,e,N; ^ ../../../src/kernel/gen_ad.c:618:21: warning: unused variable 'l1' [-Wunused-variable] int i,j,j1,k,k1,l,l1,m,n,e,N; ^~ ../../../src/kernel/gen_ad.c:618:19: warning: unused variable 'l' [-Wunused-variable] int i,j,j1,k,k1,l,l1,m,n,e,N; ^ ../../../src/kernel/gen_ad.c:618:16: warning: unused variable 'k1' [-Wunused-variable] int i,j,j1,k,k1,l,l1,m,n,e,N; ^~ ../../../src/kernel/gen_ad.c:618:14: warning: unused variable 'k' [-Wunused-variable] int i,j,j1,k,k1,l,l1,m,n,e,N; ^ ../../../src/kernel/gen_ad.c:618:11: warning: unused variable 'j1' [-Wunused-variable] int i,j,j1,k,k1,l,l1,m,n,e,N; ^~ At top level: ../../../src/kernel/gen_ad.c:327:13: warning: 'dump_param' defined but not used [-Wunused-function] static void dump_param(FILE *fp,char *title,int n,t_param ps[]) ^~~~~~~~~~ ../../../src/kernel/gen_ad.c:289:13: warning: 'ideq' defined but not used [-Wunused-function] static bool ideq(t_param *p1, t_param *p2) ^~~~ ../../../src/kernel/gen_ad.c:114:13: warning: 'aeq' defined but not used [-Wunused-function] static bool aeq(t_param *p1, t_param *p2) ^~~ In file included from ../../../src/kernel/hackblock.h:41, from ../../../src/kernel/resall.h:41, from ../../../src/kernel/gen_ad.c:57: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/kernel/topio.h:41, from ../../../src/kernel/gen_ad.c:51: ../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable] static const char *couple_lam[ecouplamNR+1] = { ^~~~~~~~~~ ../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable] static const char *constraints[eshNR+1] = { ^~~~~~~~~~~ In file included from ../../../src/kernel/readir.h:42, from ../../../src/kernel/topio.h:41, from ../../../src/kernel/gen_ad.c:51: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/kernel/toputil.h:40, from ../../../src/kernel/gen_ad.c:50: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/gen_ad.c:48: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/gen_ad.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o hackblock.lo ../../../src/kernel/hackblock.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/hackblock.c -fPIC -DPIC -o .libs/hackblock.o In file included from ../../../src/kernel/hackblock.c:44: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/hackblock.c:44: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/hackblock.h:42, from ../../../src/kernel/hackblock.c:42: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/hackblock.h:41, from ../../../src/kernel/hackblock.c:42: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pgutil.lo ../../../src/kernel/pgutil.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/pgutil.c -fPIC -DPIC -o .libs/pgutil.o make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o hizzie.lo ../../../src/kernel/hizzie.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/hizzie.c -fPIC -DPIC -o .libs/hizzie.o ../../../src/kernel/hizzie.c: In function 'set_histp': ../../../src/kernel/hizzie.c:195:8: warning: unused variable 'd' [-Wunused-variable] real d; ^ ../../../src/kernel/hizzie.c:192:27: warning: unused variable 'his0' [-Wunused-variable] int i,j,nd,na,aj,hisnr,his0,type=-1; ^~~~ ../../../src/kernel/hizzie.c:192:18: warning: unused variable 'aj' [-Wunused-variable] int i,j,nd,na,aj,hisnr,his0,type=-1; ^~ ../../../src/kernel/hizzie.c:188:15: warning: unused variable 'bHaveH' [-Wunused-variable] bool *hbond,bHaveH=FALSE; ^~~~~~ In file included from ../../../src/kernel/toputil.h:40, from ../../../src/kernel/hizzie.c:48: At top level: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/hizzie.c:46: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/hizzie.c:46: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/hizzie.c:44: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sorting.lo ../../../src/kernel/sorting.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/sorting.c -fPIC -DPIC -o .libs/sorting.o make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o readpull.lo ../../../src/kernel/readpull.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/readpull.c -fPIC -DPIC -o .libs/readpull.o ../../../src/kernel/readpull.c: In function 'read_pullparams': ../../../src/kernel/readpull.c:102:22: warning: unused variable 'nchar' [-Wunused-variable] int ninp,nerror,i,nchar,ndim,nscan,m; ^~~~~ In file included from ../../../src/kernel/readpull.c:54: At top level: ../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable] static const char *couple_lam[ecouplamNR+1] = { ^~~~~~~~~~ ../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable] static const char *constraints[eshNR+1] = { ^~~~~~~~~~~ In file included from ../../../src/kernel/readir.h:43, from ../../../src/kernel/readpull.c:54: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/readpull.c:46: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/readpull.c:46: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/kernel/readpull.c:45: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o resall.lo ../../../src/kernel/resall.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/resall.c -fPIC -DPIC -o .libs/resall.o In file included from ../../../src/kernel/hackblock.h:42, from ../../../src/kernel/resall.h:41, from ../../../src/kernel/resall.c:49: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/hackblock.h:41, from ../../../src/kernel/resall.h:41, from ../../../src/kernel/resall.c:49: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o specbond.lo ../../../src/kernel/specbond.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/specbond.c -fPIC -DPIC -o .libs/specbond.o In file included from ../../../src/kernel/specbond.c:49: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/specbond.c:49: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/pdb2top.h:41, from ../../../src/kernel/specbond.h:40, from ../../../src/kernel/specbond.c:47: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/specbond.c:43: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ ../../../src/kernel/specbond.c: In function 'mk_specbonds': ../../../src/kernel/specbond.c:236:19: warning: '%d' directive writing between 1 and 11 bytes into a region of size 10 [-Wformat-overflow=] sprintf(buf,"%s%d",*pdba->resname[pdba->atom[sgp[i]].resnr], ^~ ../../../src/kernel/specbond.c:236:16: note: directive argument in the range [-2147483647, 2147483647] sprintf(buf,"%s%d",*pdba->resname[pdba->atom[sgp[i]].resnr], ^~~~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../include/typedefs.h:52, from ../../../src/kernel/specbond.c:42: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 12) into a destination of size 10 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../src/kernel/specbond.c:245:19: warning: '%d' directive writing between 1 and 11 bytes into a region of size 10 [-Wformat-overflow=] sprintf(buf,"%s%d",*pdba->atomname[sgp[i]], sgp[i]+1); ^~ ../../../src/kernel/specbond.c:245:16: note: directive argument in the range [-2147483647, 2147483647] sprintf(buf,"%s%d",*pdba->atomname[sgp[i]], sgp[i]+1); ^~~~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../include/typedefs.h:52, from ../../../src/kernel/specbond.c:42: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 12) into a destination of size 10 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../src/kernel/specbond.c:252:19: warning: '%d' directive writing between 1 and 11 bytes into a region of size 10 [-Wformat-overflow=] sprintf(buf,"%s%d",*pdba->resname[pdba->atom[sgp[i]].resnr], ^~ ../../../src/kernel/specbond.c:252:16: note: directive argument in the range [-2147483647, 2147483647] sprintf(buf,"%s%d",*pdba->resname[pdba->atom[sgp[i]].resnr], ^~~~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../include/typedefs.h:52, from ../../../src/kernel/specbond.c:42: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 12) into a destination of size 10 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../src/kernel/specbond.c:255:19: warning: '%d' directive writing between 1 and 11 bytes into a region of size 10 [-Wformat-overflow=] sprintf(buf,"%s%d", *pdba->atomname[sgp[i]], sgp[i]+1); ^~ ../../../src/kernel/specbond.c:255:16: note: directive argument in the range [-2147483647, 2147483647] sprintf(buf,"%s%d", *pdba->atomname[sgp[i]], sgp[i]+1); ^~~~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../include/typedefs.h:52, from ../../../src/kernel/specbond.c:42: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 12) into a destination of size 10 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pdb2top.lo ../../../src/kernel/pdb2top.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/pdb2top.c -fPIC -DPIC -o .libs/pdb2top.o ../../../src/kernel/pdb2top.c: In function 'missing_atoms': ../../../src/kernel/pdb2top.c:75:16: warning: unused variable 'bRet' [-Wunused-variable] bool bFound, bRet; ^~~~ In file included from ../../../src/kernel/topio.h:41, from ../../../src/kernel/pdb2top.c:57: At top level: ../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable] static const char *couple_lam[ecouplamNR+1] = { ^~~~~~~~~~ ../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable] static const char *constraints[eshNR+1] = { ^~~~~~~~~~~ In file included from ../../../src/kernel/readir.h:42, from ../../../src/kernel/topio.h:41, from ../../../src/kernel/pdb2top.c:57: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/kernel/hackblock.h:41, from ../../../src/kernel/pdb2top.h:43, from ../../../src/kernel/pdb2top.c:50: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/kernel/pdb2top.h:41, from ../../../src/kernel/pdb2top.c:50: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/pdb2top.c:44: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/kernel/pdb2top.c:43: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/pdb2top.c:43: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o tomorse.lo ../../../src/kernel/tomorse.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/tomorse.c -fPIC -DPIC -o .libs/tomorse.o In file included from ../../../src/kernel/tomorse.c:46: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ter_db.lo ../../../src/kernel/ter_db.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/ter_db.c -fPIC -DPIC -o .libs/ter_db.o ../../../src/kernel/ter_db.c: In function 'print_ter_db': ../../../src/kernel/ter_db.c:105:20: warning: unused variable 'nname' [-Wunused-variable] char buf[STRLEN],nname[STRLEN]; ^~~~~ ../../../src/kernel/ter_db.c: In function 'filter_ter': ../../../src/kernel/ter_db.c:301:12: warning: unused variable 's2' [-Wunused-variable] char *s,*s2,*c; ^~ ../../../src/kernel/ter_db.c:299:13: warning: unused variable 'len' [-Wunused-variable] int i,j,n,len,none_idx; ^~~ In file included from ../../../src/kernel/hackblock.h:42, from ../../../src/kernel/resall.h:41, from ../../../src/kernel/ter_db.c:45: At top level: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/hackblock.h:41, from ../../../src/kernel/resall.h:41, from ../../../src/kernel/ter_db.c:45: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o topdirs.lo ../../../src/kernel/topdirs.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/topdirs.c -fPIC -DPIC -o .libs/topdirs.o make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gen_vsite.lo ../../../src/kernel/gen_vsite.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/gen_vsite.c -fPIC -DPIC -o .libs/gen_vsite.o ../../../src/kernel/gen_vsite.c: In function 'read_vsite_database': ../../../src/kernel/gen_vsite.c:150:34: warning: unused variable 'prevdir' [-Wunused-variable] int i,j,n,k,nvsite,ntop,curdir,prevdir; ^~~~~~~ ../../../src/kernel/gen_vsite.c:150:9: warning: unused variable 'j' [-Wunused-variable] int i,j,n,k,nvsite,ntop,curdir,prevdir; ^ ../../../src/kernel/gen_vsite.c: In function 'add_vsites': ../../../src/kernel/gen_vsite.c:477:33: warning: unused variable 'bb' [-Wunused-variable] int i,j,ftype,other,moreheavy,bb; ^~ ../../../src/kernel/gen_vsite.c: In function 'gen_vsites_6ring': ../../../src/kernel/gen_vsite.c:560:32: warning: variable 'yCE2' set but not used [-Wunused-but-set-variable] real xCG,yCG,xCE1,yCE1,xCE2,yCE2; ^~~~ ../../../src/kernel/gen_vsite.c:560:27: warning: variable 'xCE2' set but not used [-Wunused-but-set-variable] real xCG,yCG,xCE1,yCE1,xCE2,yCE2; ^~~~ ../../../src/kernel/gen_vsite.c:560:22: warning: variable 'yCE1' set but not used [-Wunused-but-set-variable] real xCG,yCG,xCE1,yCE1,xCE2,yCE2; ^~~~ ../../../src/kernel/gen_vsite.c:560:17: warning: variable 'xCE1' set but not used [-Wunused-but-set-variable] real xCG,yCG,xCE1,yCE1,xCE2,yCE2; ^~~~ ../../../src/kernel/gen_vsite.c:560:13: warning: variable 'yCG' set but not used [-Wunused-but-set-variable] real xCG,yCG,xCE1,yCE1,xCE2,yCE2; ^~~ ../../../src/kernel/gen_vsite.c: In function 'calc_vsite3_param': ../../../src/kernel/gen_vsite.c:693:13: warning: variable 'b_ik' set but not used [-Wunused-but-set-variable] real b_ij,b_ik; ^~~~ ../../../src/kernel/gen_vsite.c:693:8: warning: variable 'b_ij' set but not used [-Wunused-but-set-variable] real b_ij,b_ik; ^~~~ ../../../src/kernel/gen_vsite.c: In function 'gen_vsites_trp': ../../../src/kernel/gen_vsite.c:741:12: warning: unused variable 'c' [-Wunused-variable] real a,b,c[MAXFORCEPARAM]; ^ ../../../src/kernel/gen_vsite.c:740:14: warning: unused variable 'mtot' [-Wunused-variable] real mwtot,mtot,mM[NMASS],dCBM1,dCBM2,dM1M2; ^~~~ ../../../src/kernel/gen_vsite.c:740:8: warning: unused variable 'mwtot' [-Wunused-variable] real mwtot,mtot,mM[NMASS],dCBM1,dCBM2,dM1M2; ^~~~~ ../../../src/kernel/gen_vsite.c:738:8: warning: unused variable 'xM' [-Wunused-variable] real xM[NMASS]; ^~ ../../../src/kernel/gen_vsite.c:735:8: warning: variable 'a_CB_CG_CD1' set but not used [-Wunused-but-set-variable] real a_CB_CG_CD1,a_CD2_CG_CD1,a_CE2_CZ2_HZ2,a_CZ2_CH2_HH2; ^~~~~~~~~~~ ../../../src/kernel/gen_vsite.c:729:20: warning: unused variable 'dist' [-Wunused-variable] real lineA,lineB,dist; ^~~~ ../../../src/kernel/gen_vsite.c:729:14: warning: variable 'lineB' set but not used [-Wunused-but-set-variable] real lineA,lineB,dist; ^~~~~ ../../../src/kernel/gen_vsite.c:728:32: warning: unused variable 'I' [-Wunused-variable] real xcom[NMASS],ycom[NMASS],I,alpha; ^ ../../../src/kernel/gen_vsite.c: In function 'gen_vsites_tyr': ../../../src/kernel/gen_vsite.c:968:8: warning: unused variable 'vmass' [-Wunused-variable] real vmass,vdist,mM; ^~~~~ ../../../src/kernel/gen_vsite.c: In function 'do_vsites': ../../../src/kernel/gen_vsite.c:1332:29: warning: unused variable 'bb' [-Wunused-variable] int Hatoms[4],heavies[4],bb; ^~ In file included from ../../../src/kernel/gen_vsite.c:48: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/gen_vsite.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/hackblock.h:41, from ../../../src/kernel/gen_vsite.h:43, from ../../../src/kernel/gen_vsite.c:44: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/kernel/gen_vsite.h:41, from ../../../src/kernel/gen_vsite.c:44: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o topexcl.lo ../../../src/kernel/topexcl.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/topexcl.c -fPIC -DPIC -o .libs/topexcl.o In file included from ../../../include/gpp_nextnb.h:40, from ../../../src/kernel/topexcl.c:45: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o topshake.lo ../../../src/kernel/topshake.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/topshake.c -fPIC -DPIC -o .libs/topshake.o ../../../src/kernel/topshake.c: In function 'make_shake': ../../../src/kernel/topshake.c:98:19: warning: unused variable 'b' [-Wunused-variable] int nb,b,i,j,ftype,ftype_a; ^ ../../../src/kernel/topshake.c:98:16: warning: unused variable 'nb' [-Wunused-variable] int nb,b,i,j,ftype,ftype_a; ^~ In file included from ../../../src/kernel/topshake.c:46: At top level: ../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable] static const char *couple_lam[ecouplamNR+1] = { ^~~~~~~~~~ ../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable] static const char *constraints[eshNR+1] = { ^~~~~~~~~~~ In file included from ../../../src/kernel/readir.h:43, from ../../../src/kernel/topshake.c:46: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/readir.h:42, from ../../../src/kernel/topshake.c:46: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o toputil.lo ../../../src/kernel/toputil.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/toputil.c -fPIC -DPIC -o .libs/toputil.o ../../../src/kernel/toputil.c:135:13: warning: 'print_nbt' defined but not used [-Wunused-function] static void print_nbt (FILE *out,char *title,t_atomtype at, ^~~~~~~~~ In file included from ../../../src/kernel/topdirs.h:40, from ../../../src/kernel/toputil.c:45: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o glaasje.o ../../../src/kernel/glaasje.c ../../../src/kernel/glaasje.c: In function 'do_glas': ../../../src/kernel/glaasje.c:55:40: warning: unused variable 'r3' [-Wunused-variable] real wd,wdd,zi,fz,dd,d10,d4,d9,d3,r9,r3,sign,cc6,cc12; ^~ ../../../src/kernel/glaasje.c:55:37: warning: unused variable 'r9' [-Wunused-variable] real wd,wdd,zi,fz,dd,d10,d4,d9,d3,r9,r3,sign,cc6,cc12; ^~ In file included from ../../../src/kernel/glaasje.c:44: At top level: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xlate.lo ../../../src/kernel/xlate.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/xlate.c -fPIC -DPIC -o .libs/xlate.o make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gctio.o ../../../src/kernel/gctio.c In file included from ../../../src/kernel/gctio.c:49: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/kernel/xmdrun.h:50, from ../../../src/kernel/gctio.c:41: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o tpbcmp.lo ../../../src/kernel/tpbcmp.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/tpbcmp.c -fPIC -DPIC -o .libs/tpbcmp.o ../../../src/kernel/tpbcmp.c: In function 'cmp_block': ../../../src/kernel/tpbcmp.c:242:11: warning: unused variable 'k' [-Wunused-variable] int i,j,k; ^ ../../../src/kernel/tpbcmp.c:242:9: warning: unused variable 'j' [-Wunused-variable] int i,j,k; ^ ../../../src/kernel/tpbcmp.c:242:7: warning: unused variable 'i' [-Wunused-variable] int i,j,k; ^ ../../../src/kernel/tpbcmp.c: In function 'cmp_blocka': ../../../src/kernel/tpbcmp.c:252:11: warning: unused variable 'k' [-Wunused-variable] int i,j,k; ^ ../../../src/kernel/tpbcmp.c:252:9: warning: unused variable 'j' [-Wunused-variable] int i,j,k; ^ ../../../src/kernel/tpbcmp.c:252:7: warning: unused variable 'i' [-Wunused-variable] int i,j,k; ^ ../../../src/kernel/tpbcmp.c: In function 'cmp_atom': ../../../src/kernel/tpbcmp.c:265:8: warning: unused variable 'buf' [-Wunused-variable] char buf[256]; ^~~ ../../../src/kernel/tpbcmp.c:264:8: warning: unused variable 'i' [-Wunused-variable] int i; ^ ../../../src/kernel/tpbcmp.c: In function 'cmp_top': ../../../src/kernel/tpbcmp.c:302:7: warning: unused variable 'i' [-Wunused-variable] int i; ^ ../../../src/kernel/tpbcmp.c: In function 'comp_tpx': ../../../src/kernel/tpbcmp.c:567:15: warning: unused variable 'sh' [-Wunused-variable] t_tpxheader sh[2]; ^~ ../../../src/kernel/tpbcmp.c: In function 'comp_enx': ../../../src/kernel/tpbcmp.c:723:38: warning: unused variable 'buf' [-Wunused-variable] char **enm1=NULL,**enm2=NULL,buf[256]; ^~~ ../../../src/kernel/tpbcmp.c:721:36: warning: unused variable 'block' [-Wunused-variable] int in1,in2,nre,nre1,nre2,block; ^~~~~ At top level: ../../../src/kernel/tpbcmp.c:77:13: warning: 'cmp_uc' defined but not used [-Wunused-function] static void cmp_uc(FILE *fp,char *s,int index,unsigned char i1,unsigned char i2) ^~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/kernel/tpbcmp.c:48: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o topio.lo ../../../src/kernel/topio.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/topio.c -fPIC -DPIC -o .libs/topio.o ../../../src/kernel/topio.c: In function 'read_topol': ../../../src/kernel/topio.c:474:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation] else ^~~~ ../../../src/kernel/topio.c:476:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' break; ^~~~~ ../../../src/kernel/topio.c:314:15: warning: unused variable 'block' [-Wunused-variable] t_topology *block=NULL; ^~~~~ In file included from ../../../src/kernel/topio.h:41, from ../../../src/kernel/topio.c:66: At top level: ../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable] static const char *couple_lam[ecouplamNR+1] = { ^~~~~~~~~~ ../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable] static const char *constraints[eshNR+1] = { ^~~~~~~~~~~ In file included from ../../../src/kernel/readir.h:42, from ../../../src/kernel/topio.h:41, from ../../../src/kernel/topio.c:66: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/kernel/vsite_parm.h:41, from ../../../src/kernel/topio.c:59: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ionize.o ../../../src/kernel/ionize.c ../../../src/kernel/ionize.c: In function 'ionize': ../../../src/kernel/ionize.c:735:2: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (bL) ^~ ../../../src/kernel/ionize.c:737:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (ephot == 2) E_lost += 0.5; /* Real energy should be 2.5 KeV*/ ^~ In file included from ../../../src/kernel/ionize.c:48: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/ionize.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o mdrun.o ../../../src/kernel/mdrun.c ../../../src/kernel/mdrun.c: In function 'main': ../../../src/kernel/mdrun.c:387:20: warning: unused variable 'fptest' [-Wunused-variable] FILE *fplog,*fptest; ^~~~~~ ../../../src/kernel/mdrun.c:386:12: warning: unused variable 'HaveCheckpoint' [-Wunused-variable] bool HaveCheckpoint; ^~~~~~~~~~~~~~ ../../../src/kernel/mdrun.c:285:15: warning: unused variable 'bPPPME' [-Wunused-variable] static bool bPPPME = FALSE; ^~~~~~ ../../../src/kernel/mdrun.c:284:15: warning: unused variable 'bCart' [-Wunused-variable] static bool bCart = FALSE; ^~~~~ At top level: ../../../src/kernel/mdrun.c:284:15: warning: 'bCart' defined but not used [-Wunused-variable] ../../../src/kernel/mdrun.c:285:15: warning: 'bPPPME' defined but not used [-Wunused-variable] static bool bPPPME = FALSE; ^~~~~~ In file included from ../../../include/pull.h:44, from ../../../include/mdrun.h:56, from ../../../src/kernel/mdrun.c:49: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../include/pull.h:44, from ../../../include/mdrun.h:56, from ../../../src/kernel/mdrun.c:49: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/mdrun.h:50, from ../../../src/kernel/mdrun.c:49: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/kernel/mdrun.c:44: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/kernel/mdrun.c:42: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o do_gct.o ../../../src/kernel/do_gct.c ../../../src/kernel/do_gct.c: In function 'init_coupling': ../../../src/kernel/do_gct.c:63:19: warning: unused variable 'atj' [-Wunused-variable] int ati,atj; ^~~ ../../../src/kernel/do_gct.c:63:15: warning: unused variable 'ati' [-Wunused-variable] int ati,atj; ^~~ ../../../src/kernel/do_gct.c:62:26: warning: unused variable 'j' [-Wunused-variable] int i,nc,index,j; ^ ../../../src/kernel/do_gct.c:62:20: warning: unused variable 'index' [-Wunused-variable] int i,nc,index,j; ^~~~~ ../../../src/kernel/do_gct.c:62:17: warning: unused variable 'nc' [-Wunused-variable] int i,nc,index,j; ^~ ../../../src/kernel/do_gct.c:62:15: warning: unused variable 'i' [-Wunused-variable] int i,nc,index,j; ^ ../../../src/kernel/do_gct.c: In function 'gprod': ../../../src/kernel/do_gct.c:343:8: warning: unused variable 'i' [-Wunused-variable] int i; ^ ../../../src/kernel/do_gct.c: In function 'do_coupling': ../../../src/kernel/do_gct.c:489:15: warning: unused variable 'bTest' [-Wunused-variable] bool bTest,bPrint; ^~~~~ ../../../src/kernel/do_gct.c:487:59: warning: unused variable 'xi12' [-Wunused-variable] real Epol,Eintern,Virial,muabs,xiH=-1,xiS=-1,xi6,xi12; ^~~~ ../../../src/kernel/do_gct.c:487:55: warning: unused variable 'xi6' [-Wunused-variable] real Epol,Eintern,Virial,muabs,xiH=-1,xiS=-1,xi6,xi12; ^~~ ../../../src/kernel/do_gct.c:486:32: warning: unused variable 'ffc' [-Wunused-variable] real ff6,ff12,ffa,ffb,ffc,ffq,factor,dt,mu_ind; ^~~ ../../../src/kernel/do_gct.c:486:28: warning: unused variable 'ffb' [-Wunused-variable] real ff6,ff12,ffa,ffb,ffc,ffq,factor,dt,mu_ind; ^~~ ../../../src/kernel/do_gct.c:486:24: warning: unused variable 'ffa' [-Wunused-variable] real ff6,ff12,ffa,ffb,ffc,ffq,factor,dt,mu_ind; ^~~ ../../../src/kernel/do_gct.c:485:60: warning: unused variable 'rmsf' [-Wunused-variable] real deviation[eoObsNR],prdev[eoObsNR],epot0,dist,rmsf; ^~~~ At top level: ../../../src/kernel/do_gct.c:457:13: warning: 'dump_fm' defined but not used [-Wunused-function] static void dump_fm(FILE *fp,int n,real f[],char *s) ^~~~~~~ In file included from ../../../src/kernel/do_gct.c:50: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../include/pull.h:44, from ../../../include/mdrun.h:56, from ../../../src/kernel/do_gct.c:48: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../include/pull.h:44, from ../../../include/mdrun.h:56, from ../../../src/kernel/do_gct.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/xmdrun.h:50, from ../../../src/kernel/do_gct.c:41: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o repl_ex.o ../../../src/kernel/repl_ex.c ../../../src/kernel/repl_ex.c: In function 'init_replica_exchange': ../../../src/kernel/repl_ex.c:111:8: warning: unused variable 'temp' [-Wunused-variable] real temp,pres; ^~~~ ../../../src/kernel/repl_ex.c: In function 'replica_exchange': ../../../src/kernel/repl_ex.c:560:20: warning: unused variable 'shift' [-Wunused-variable] int exchange=-1,shift; ^~~~~ At top level: ../../../src/kernel/repl_ex.c:544:13: warning: 'write_debug_x' defined but not used [-Wunused-function] static void write_debug_x(t_state *state) ^~~~~~~~~~~~~ In file included from ../../../src/kernel/repl_ex.c:48: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/repl_ex.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/repl_ex.c:46: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o toppush.lo ../../../src/kernel/toppush.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/toppush.c -fPIC -DPIC -o .libs/toppush.o ../../../src/kernel/toppush.c: In function 'push_bt': ../../../src/kernel/toppush.c:573:37: warning: variable 'nrfpB' set but not used [-Wunused-but-set-variable] int i,ft,ftype,nn,nrfp,nrfpA,nrfpB; ^~~~~ ../../../src/kernel/toppush.c: In function 'push_dihedraltype': ../../../src/kernel/toppush.c:661:37: warning: variable 'nrfpB' set but not used [-Wunused-but-set-variable] int i,ft,ftype,nn,nrfp,nrfpA,nrfpB,nral; ^~~~~ ../../../src/kernel/toppush.c: In function 'push_nbt': ../../../src/kernel/toppush.c:778:17: warning: unused variable 'sig6' [-Wunused-variable] real cr[4],sig6; ^~~~ ../../../src/kernel/toppush.c:776:23: warning: unused variable 'atnr' [-Wunused-variable] int i,f,n,ftype,atnr,nrfp; ^~~~ ../../../src/kernel/toppush.c: In function 'push_atom_now': ../../../src/kernel/toppush.c:871:7: warning: unused variable 'j' [-Wunused-variable] int j,resnr_diff=-1; ^ ../../../src/kernel/toppush.c: In function 'push_bond': ../../../src/kernel/toppush.c:1234:18: warning: unused variable 'paramB' [-Wunused-variable] t_param param,paramB,*param_defA,*param_defB; ^~~~~~ In file included from ../../../src/kernel/toppush.c:51: At top level: ../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable] static const char *couple_lam[ecouplamNR+1] = { ^~~~~~~~~~ ../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable] static const char *constraints[eshNR+1] = { ^~~~~~~~~~~ In file included from ../../../src/kernel/readir.h:42, from ../../../src/kernel/toppush.c:51: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/kernel/toputil.h:40, from ../../../src/kernel/toppush.c:48: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ ../../../src/kernel/toppush.c: In function 'push_at': ../../../src/kernel/toppush.c:446:41: warning: '%s' directive writing up to 4095 bytes into a region of size 236 [-Wformat-overflow=] sprintf(errbuf,"Overriding atomtype %s",type); ^~ ~~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../src/kernel/toppush.c:43: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 21 and 4116 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xutils.o ../../../src/kernel/xutils.c ../../../src/kernel/xutils.c: In function 'calc_mu_aver': ../../../src/kernel/xutils.c:65:19: warning: variable 'end' set but not used [-Wunused-but-set-variable] int i,start,end; ^~~ ../../../src/kernel/xutils.c: In function 'update_forcefield': ../../../src/kernel/xutils.c:335:10: warning: unused variable 'bDone' [-Wunused-variable] bool bDone; ^~~~~ In file included from ../../../src/kernel/xutils.c:45: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/xutils.c:45: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/xmdrun.h:50, from ../../../src/kernel/xutils.c:44: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o luck.o ../../../src/kernel/luck.c In file included from ../../../include/statutil.h:51, from ../../../src/kernel/luck.c:43: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/kernel/luck.c:41: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o readir.lo ../../../src/kernel/readir.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/readir.c -fPIC -DPIC -o .libs/readir.o ../../../src/kernel/readir.c: In function 'do_index': ../../../src/kernel/readir.c:1427:38: warning: variable 'nbTS' set but not used [-Wunused-but-set-variable] nSAon,nSAoff,nSAsteps,nQMg,nbOPT,nbTS; ^~~~ ../../../src/kernel/readir.c:1427:32: warning: variable 'nbOPT' set but not used [-Wunused-but-set-variable] nSAon,nSAoff,nSAsteps,nQMg,nbOPT,nbTS; ^~~~~ ../../../src/kernel/readir.c:1427:18: warning: variable 'nSAsteps' set but not used [-Wunused-but-set-variable] nSAon,nSAoff,nSAsteps,nQMg,nbOPT,nbTS; ^~~~~~~~ ../../../src/kernel/readir.c:1427:11: warning: variable 'nSAoff' set but not used [-Wunused-but-set-variable] nSAon,nSAoff,nSAsteps,nQMg,nbOPT,nbTS; ^~~~~~ ../../../src/kernel/readir.c:1427:5: warning: variable 'nSAon' set but not used [-Wunused-but-set-variable] nSAon,nSAoff,nSAsteps,nQMg,nbOPT,nbTS; ^~~~~ ../../../src/kernel/readir.c:1426:61: warning: variable 'nCASelec' set but not used [-Wunused-but-set-variable] int nQMmethod,nQMbasis,nQMcharge,nQMmult,nbSH,nCASorb,nCASelec, ^~~~~~~~ ../../../src/kernel/readir.c:1426:53: warning: variable 'nCASorb' set but not used [-Wunused-but-set-variable] int nQMmethod,nQMbasis,nQMcharge,nQMmult,nbSH,nCASorb,nCASelec, ^~~~~~~ ../../../src/kernel/readir.c:1426:48: warning: variable 'nbSH' set but not used [-Wunused-but-set-variable] int nQMmethod,nQMbasis,nQMcharge,nQMmult,nbSH,nCASorb,nCASelec, ^~~~ ../../../src/kernel/readir.c:1426:40: warning: variable 'nQMmult' set but not used [-Wunused-but-set-variable] int nQMmethod,nQMbasis,nQMcharge,nQMmult,nbSH,nCASorb,nCASelec, ^~~~~~~ ../../../src/kernel/readir.c:1426:30: warning: variable 'nQMcharge' set but not used [-Wunused-but-set-variable] int nQMmethod,nQMbasis,nQMcharge,nQMmult,nbSH,nCASorb,nCASelec, ^~~~~~~~~ ../../../src/kernel/readir.c:1424:11: warning: unused variable 'SAtime' [-Wunused-variable] real SAtime; ^~~~~~ ../../../src/kernel/readir.c: In function 'triple_check': ../../../src/kernel/readir.c:1872:17: warning: unused variable 'npct' [-Wunused-variable] int i,m,nmol,npct; ^~~~ In file included from ../../../src/kernel/readir.c:58: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/readir.c:58: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/readir.h:43, from ../../../src/kernel/readir.c:54: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/readir.c:53: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o protonate.o ../../../src/kernel/protonate.c In file included from ../../../src/kernel/protonate.c:50: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/protonate.c:50: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/hackblock.h:42, from ../../../src/kernel/genhydro.h:41, from ../../../src/kernel/protonate.c:47: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/genhydro.h:40, from ../../../src/kernel/protonate.c:47: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/kernel/protonate.c:45: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/kernel/protonate.c:43: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o genalg.o ../../../src/kernel/genalg.c ../../../src/kernel/genalg.c: In function 'update_ga': ../../../src/kernel/genalg.c:197:12: warning: unused variable 'j' [-Wunused-variable] int i, j, L, n; /* counting variables */ ^ In file included from ../../../src/kernel/genalg.c:75: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/genalg.c:75: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o tpbconv.o ../../../src/kernel/tpbconv.c ../../../src/kernel/tpbconv.c: In function 'main': ../../../src/kernel/tpbconv.c:365:7: warning: unused variable 'nerror' [-Wunused-variable] int nerror = 0; ^~~~~~ ../../../src/kernel/tpbconv.c:325:17: warning: unused variable 'gopts' [-Wunused-variable] t_gromppopts *gopts; ^~~~~ ../../../src/kernel/tpbconv.c:324:21: warning: unused variable 'irnew' [-Wunused-variable] t_inputrec *ir,*irnew=NULL; ^~~~~ ../../../src/kernel/tpbconv.c:318:33: warning: unused variable 'nsteps_org' [-Wunused-variable] int i,frame,run_step,nsteps_org; ^~~~~~~~~~ In file included from ../../../src/kernel/tpbconv.c:56: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/tpbconv.c:56: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/tpbconv.c:54: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/kernel/tpbconv.c:52: ../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable] static const char *couple_lam[ecouplamNR+1] = { ^~~~~~~~~~ ../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable] static const char *constraints[eshNR+1] = { ^~~~~~~~~~~ In file included from ../../../src/kernel/readir.h:43, from ../../../src/kernel/tpbconv.c:52: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/readir.h:42, from ../../../src/kernel/tpbconv.c:52: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o vsite_parm.lo ../../../src/kernel/vsite_parm.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/vsite_parm.c -fPIC -DPIC -o .libs/vsite_parm.o ../../../src/kernel/vsite_parm.c: In function 'clean_vsite_bonds': ../../../src/kernel/vsite_parm.c:862:62: warning: unused variable 'vsitetype' [-Wunused-variable] int ftype,i,j,parnr,k,l,m,n,nvsite,nOut,kept_i,vsnral,vsitetype; ^~~~~~~~~ ../../../src/kernel/vsite_parm.c:862:30: warning: unused variable 'l' [-Wunused-variable] int ftype,i,j,parnr,k,l,m,n,nvsite,nOut,kept_i,vsnral,vsitetype; ^ ../../../src/kernel/vsite_parm.c:862:22: warning: unused variable 'parnr' [-Wunused-variable] int ftype,i,j,parnr,k,l,m,n,nvsite,nOut,kept_i,vsnral,vsitetype; ^~~~~ ../../../src/kernel/vsite_parm.c: In function 'clean_vsite_angles': ../../../src/kernel/vsite_parm.c:1035:51: warning: unused variable 'vsitetype' [-Wunused-variable] int i,j,parnr,k,l,m,n,nvsite,kept_i,vsnral,vsitetype; ^~~~~~~~~ ../../../src/kernel/vsite_parm.c:1035:24: warning: unused variable 'l' [-Wunused-variable] int i,j,parnr,k,l,m,n,nvsite,kept_i,vsnral,vsitetype; ^ ../../../src/kernel/vsite_parm.c:1035:16: warning: unused variable 'parnr' [-Wunused-variable] int i,j,parnr,k,l,m,n,nvsite,kept_i,vsnral,vsitetype; ^~~~~ ../../../src/kernel/vsite_parm.c: In function 'clean_vsite_dihs': ../../../src/kernel/vsite_parm.c:1130:28: warning: unused variable 'l' [-Wunused-variable] int ftype,i,parnr,k,l,m,n,nvsite,kept_i,vsnral; ^ ../../../src/kernel/vsite_parm.c:1130:20: warning: unused variable 'parnr' [-Wunused-variable] int ftype,i,parnr,k,l,m,n,nvsite,kept_i,vsnral; ^~~~~ ../../../src/kernel/vsite_parm.c:1130:12: warning: unused variable 'ftype' [-Wunused-variable] int ftype,i,parnr,k,l,m,n,nvsite,kept_i,vsnral; ^~~~~ In file included from ../../../src/kernel/vsite_parm.c:47: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/vsite_parm.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/hackblock.h:41, from ../../../src/kernel/resall.h:41, from ../../../src/kernel/vsite_parm.c:45: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/kernel/vsite_parm.h:41, from ../../../src/kernel/vsite_parm.c:43: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmxdump.o ../../../src/kernel/gmxdump.c ../../../src/kernel/gmxdump.c: In function 'list_tpx': ../../../src/kernel/gmxdump.c:146:16: warning: left-hand operand of comma expression has no effect [-Wunused-value] if (state,tpx.bF) { ^ ../../../src/kernel/gmxdump.c:99:20: warning: unused variable 'fp' [-Wunused-variable] int step,fp,indent,i,j,**gcount,atot; ^~ ../../../src/kernel/gmxdump.c: In function 'list_ene': ../../../src/kernel/gmxdump.c:314:17: warning: unused variable 'ndr' [-Wunused-variable] int in,ndr; ^~~ At top level: ../../../src/kernel/gmxdump.c:65:13: warning: 'dump_top' defined but not used [-Wunused-function] static void dump_top(FILE *fp,t_topology *top,char *tpr) ^~~~~~~~ In file included from ../../../src/kernel/gmxdump.c:47: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/kernel/gmxdump.c:46: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nm2type.o ../../../src/kernel/nm2type.c ../../../src/kernel/nm2type.c: In function 'rd_nm2type': ../../../src/kernel/nm2type.c:72:20: warning: unused variable 'blen' [-Wunused-variable] double qq,mm,*blen; ^~~~ ../../../src/kernel/nm2type.c: In function 'nm2type': ../../../src/kernel/nm2type.c:160:38: warning: unused variable 'quality' [-Wunused-variable] int *bbb,*n_mask,*m_mask,**match,**quality; ^~~~~~~ In file included from ../../../src/kernel/hackblock.h:41, from ../../../src/kernel/pdb2top.h:43, from ../../../src/kernel/nm2type.c:59: At top level: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/kernel/toputil.h:40, from ../../../src/kernel/toppush.h:41, from ../../../src/kernel/nm2type.c:58: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/nm2type.c:52: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/kernel/nm2type.c:51: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/kernel/nm2type.c:44: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/kernel/nm2type.c:42: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o x2top.o ../../../src/kernel/x2top.c ../../../src/kernel/x2top.c: In function 'set_cgnr': ../../../src/kernel/x2top.c:178:15: warning: unused variable 'mt' [-Wunused-variable] double qt=0,mt=0; ^~ ../../../src/kernel/x2top.c: In function 'set_force_const': ../../../src/kernel/x2top.c:255:7: warning: unused variable 'i' [-Wunused-variable] int i; ^ ../../../src/kernel/x2top.c: In function 'main': ../../../src/kernel/x2top.c:419:15: warning: unused variable 'scale' [-Wunused-variable] static real scale = 1.1, kb = 4e5,kt = 400,kp = 5; ^~~~~ ../../../src/kernel/x2top.c:411:14: warning: unused variable 'cutoff' [-Wunused-variable] real cutoff,qtot,mtot; ^~~~~~ ../../../src/kernel/x2top.c:408:24: warning: unused variable 'ndih' [-Wunused-variable] int i,j,k,l,m,ndih; ^~~~ ../../../src/kernel/x2top.c:408:22: warning: unused variable 'm' [-Wunused-variable] int i,j,k,l,m,ndih; ^ ../../../src/kernel/x2top.c:408:20: warning: unused variable 'l' [-Wunused-variable] int i,j,k,l,m,ndih; ^ ../../../src/kernel/x2top.c:408:18: warning: unused variable 'k' [-Wunused-variable] int i,j,k,l,m,ndih; ^ ../../../src/kernel/x2top.c:408:16: warning: unused variable 'j' [-Wunused-variable] int i,j,k,l,m,ndih; ^ ../../../src/kernel/x2top.c:408:14: warning: unused variable 'i' [-Wunused-variable] int i,j,k,l,m,ndih; ^ ../../../src/kernel/x2top.c:407:14: warning: unused variable 'nres' [-Wunused-variable] int nres; /* number of molecules? */ ^~~~ At top level: ../../../src/kernel/x2top.c:419:15: warning: 'scale' defined but not used [-Wunused-variable] static real scale = 1.1, kb = 4e5,kt = 400,kp = 5; ^~~~~ ../../../src/kernel/x2top.c:117:12: warning: 'get_atype' defined but not used [-Wunused-function] static int get_atype(char *nm) ^~~~~~~~~ ../../../src/kernel/x2top.c:80:13: warning: 'set_x_blen' defined but not used [-Wunused-function] static real set_x_blen(real scale) ^~~~~~~~~~ In file included from ../../../src/kernel/topio.h:41, from ../../../src/kernel/gen_ad.h:42, from ../../../src/kernel/x2top.c:60: ../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable] static const char *couple_lam[ecouplamNR+1] = { ^~~~~~~~~~ ../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable] static const char *constraints[eshNR+1] = { ^~~~~~~~~~~ In file included from ../../../src/kernel/hackblock.h:41, from ../../../src/kernel/pdb2top.h:43, from ../../../src/kernel/x2top.c:59: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/kernel/toputil.h:40, from ../../../src/kernel/toppush.h:41, from ../../../src/kernel/x2top.c:58: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/x2top.c:52: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/kernel/x2top.c:51: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/kernel/x2top.c:42: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/kernel/x2top.c:40: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmxcheck.o ../../../src/kernel/gmxcheck.c ../../../src/kernel/gmxcheck.c: In function 'tpx2system': ../../../src/kernel/gmxcheck.c:90:7: warning: unused variable 'i' [-Wunused-variable] int i,nmol,nvsite=0; ^ ../../../src/kernel/gmxcheck.c: In function 'tpx2methods': ../../../src/kernel/gmxcheck.c:140:15: warning: unused variable 'i' [-Wunused-variable] int i,step; ^ ../../../src/kernel/gmxcheck.c:136:15: warning: unused variable 'sh' [-Wunused-variable] t_tpxheader sh; ^~ ../../../src/kernel/gmxcheck.c: In function 'chk_bonds': ../../../src/kernel/gmxcheck.c:202:26: warning: variable 'devtot' set but not used [-Wunused-but-set-variable] real b0,blen,deviation,devtot; ^~~~~~ ../../../src/kernel/gmxcheck.c:201:14: warning: unused variable 'i' [-Wunused-variable] int ftype,i,k,ai,aj,type; ^ ../../../src/kernel/gmxcheck.c: In function 'chk_trj': ../../../src/kernel/gmxcheck.c:252:35: warning: unused variable 'bOK' [-Wunused-variable] bool bShowTimestep=TRUE,bOK,newline=FALSE; ^~~ ../../../src/kernel/gmxcheck.c:251:40: warning: unused variable 'prec' [-Wunused-variable] real rdum,t,tt,old_t1,old_t2,prec; ^~~~ ../../../src/kernel/gmxcheck.c:251:23: warning: unused variable 'tt' [-Wunused-variable] real rdum,t,tt,old_t1,old_t2,prec; ^~ ../../../src/kernel/gmxcheck.c:251:16: warning: unused variable 'rdum' [-Wunused-variable] real rdum,t,tt,old_t1,old_t2,prec; ^~~~ ../../../src/kernel/gmxcheck.c:250:16: warning: variable 'fpos' set but not used [-Wunused-but-set-variable] off_t fpos; ^~~~ ../../../src/kernel/gmxcheck.c: In function 'chk_ndx': ../../../src/kernel/gmxcheck.c:526:10: warning: unused variable 'j' [-Wunused-variable] int i,j; ^ ../../../src/kernel/gmxcheck.c: In function 'chk_enx': ../../../src/kernel/gmxcheck.c:550:25: warning: unused variable 'ndr' [-Wunused-variable] int in,nre,fnr,ndr; ^~~ In file included from ../../../src/kernel/gmxcheck.c:57: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/gmxcheck.c:57: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/gmxcheck.c:48: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/kernel/gmxcheck.c:47: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o libgmxpreprocess_d.la add_par.lo compute_io.lo convparm.lo gen_ad.lo gen_vsite.lo genhydro.lo gmxcpp.lo gpp_atomtype.lo gpp_bond_atomtype.lo h_db.lo hackblock.lo hizzie.lo pdb2top.lo pgutil.lo readir.lo readpull.lo resall.lo sorting.lo specbond.lo ter_db.lo tomorse.lo topdirs.lo topexcl.lo topio.lo toppush.lo topshake.lo toputil.lo tpbcmp.lo vsite_parm.lo xlate.lo -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath ar cru .libs/libgmxpreprocess_d.a .libs/add_par.o .libs/compute_io.o .libs/convparm.o .libs/gen_ad.o .libs/gen_vsite.o .libs/genhydro.o .libs/gmxcpp.o .libs/gpp_atomtype.o .libs/gpp_bond_atomtype.o .libs/h_db.o .libs/hackblock.o .libs/hizzie.o .libs/pdb2top.o .libs/pgutil.o .libs/readir.o .libs/readpull.o .libs/resall.o .libs/sorting.o .libs/specbond.o .libs/ter_db.o .libs/tomorse.o .libs/topdirs.o .libs/topexcl.o .libs/topio.o .libs/toppush.o .libs/topshake.o .libs/toputil.o .libs/tpbcmp.o .libs/vsite_parm.o .libs/xlate.o ranlib .libs/libgmxpreprocess_d.a creating libgmxpreprocess_d.la (cd .libs && rm -f libgmxpreprocess_d.la && ln -s ../libgmxpreprocess_d.la libgmxpreprocess_d.la) make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pdb2gmx.o ../../../src/kernel/pdb2gmx.c ../../../src/kernel/pdb2gmx.c:149:20: warning: 'get_cystp' defined but not used [-Wunused-function] static const char *get_cystp(int resnr) ^~~~~~~~~ In file included from ../../../src/kernel/toputil.h:40, from ../../../src/kernel/pdb2gmx.c:55: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/pdb2gmx.c:54: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/kernel/pdb2gmx.c:51: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/kernel/pdb2gmx.c:50: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/pdb2gmx.c:50: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/pdb2gmx.c:46: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ ../../../src/kernel/pdb2gmx.c: In function 'main': ../../../src/kernel/pdb2gmx.c:783:18: warning: '.rtp' directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(rtp,"%s.rtp",forcefield); ^~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../src/kernel/pdb2gmx.c:42: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 5 and 4100 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../src/kernel/pdb2gmx.c:1162:31: warning: '%s' directive writing up to 4095 bytes into a region of size 4089 [-Wformat-overflow=] sprintf(molname,"Protein%s",suffix); ^~ ~~~~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../src/kernel/pdb2gmx.c:42: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 8 and 4103 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../src/kernel/pdb2gmx.c:1176:22: warning: '_pr.itp' directive writing 7 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(posre_fn,"%s_pr.itp",buf_fn); ^~~~~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../src/kernel/pdb2gmx.c:42: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 8 and 4103 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o md.o ../../../src/kernel/md.c ../../../src/kernel/md.c: In function 'mdrunner': ../../../src/kernel/md.c:140:15: warning: unused variable 'gro' [-Wunused-variable] char *gro; ^~~ ../../../src/kernel/md.c:139:45: warning: unused variable 'nalloc' [-Wunused-variable] int i,m,nChargePerturbed=-1,status,nalloc; ^~~~~~ ../../../src/kernel/md.c:139:16: warning: unused variable 'm' [-Wunused-variable] int i,m,nChargePerturbed=-1,status,nalloc; ^ ../../../src/kernel/md.c:139:14: warning: unused variable 'i' [-Wunused-variable] int i,m,nChargePerturbed=-1,status,nalloc; ^ ../../../src/kernel/md.c:128:20: warning: unused variable 'tmpr2' [-Wunused-variable] real tmpr1,tmpr2; ^~~~~ ../../../src/kernel/md.c:128:14: warning: unused variable 'tmpr1' [-Wunused-variable] real tmpr1,tmpr2; ^~~~~ ../../../src/kernel/md.c: In function 'do_md': ../../../src/kernel/md.c:533:16: warning: unused variable 'grpname' [-Wunused-variable] char *grpname; ^~~~~~~ ../../../src/kernel/md.c:525:15: warning: unused variable 'timestep' [-Wunused-variable] real timestep=0; ^~~~~~~~ In file included from ../../../include/pppm.h:46, from ../../../src/kernel/md.c:69: At top level: ../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function] static t_complex cdiv(t_complex teller,t_complex noemer) ^~~~ ../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function] static t_complex csub(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function] static t_complex cadd(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function] static t_complex rcexp(real r) ^~~~~ ../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable] static t_complex cnul = { 0.0, 0.0 }; ^~~~ In file included from ../../../include/statutil.h:51, from ../../../src/kernel/md.c:46: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/kernel/md.c:45: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/md.c:45: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o gmxcheck gmxcheck.o libgmxpreprocess_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/gmxcheck gmxcheck.o ./.libs/libgmxpreprocess_d.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath creating gmxcheck make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o gmxdump gmxdump.o libgmxpreprocess_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/gmxdump gmxdump.o ./.libs/libgmxpreprocess_d.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath creating gmxdump make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o tpbconv tpbconv.o libgmxpreprocess_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/tpbconv tpbconv.o ./.libs/libgmxpreprocess_d.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath creating tpbconv make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o protonate protonate.o libgmxpreprocess_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/protonate protonate.o ./.libs/libgmxpreprocess_d.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath creating protonate make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o luck luck.o libgmxpreprocess_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/luck luck.o ./.libs/libgmxpreprocess_d.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath creating luck make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o grompp grompp.o libgmxpreprocess_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/grompp grompp.o ./.libs/libgmxpreprocess_d.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath creating grompp make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o x2top x2top.o nm2type.o libgmxpreprocess_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/x2top x2top.o nm2type.o ./.libs/libgmxpreprocess_d.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath creating x2top make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o mdrun glaasje.o gctio.o ionize.o do_gct.o repl_ex.o xutils.o md.o mdrun.o genalg.o libgmxpreprocess_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/mdrun glaasje.o gctio.o ionize.o do_gct.o repl_ex.o xutils.o md.o mdrun.o genalg.o ./.libs/libgmxpreprocess_d.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath creating mdrun make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o pdb2gmx pdb2gmx.o libgmxpreprocess_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/pdb2gmx pdb2gmx.o ./.libs/libgmxpreprocess_d.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath creating pdb2gmx make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' Making all in tools make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o polynomials.lo ../../../src/tools/polynomials.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/polynomials.c -fPIC -DPIC -o .libs/polynomials.o In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/tools/polynomials.c:44: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pp2shift.lo ../../../src/tools/pp2shift.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/pp2shift.c -fPIC -DPIC -o .libs/pp2shift.o In file included from ../../../src/tools/pp2shift.c:50: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/pp2shift.c:47: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o do_dssp.o ../../../src/tools/do_dssp.c ../../../src/tools/do_dssp.c: In function 'main': ../../../src/tools/do_dssp.c:347:16: warning: unused variable 'j' [-Wunused-variable] int i,j,natoms,nframe=0; ^ In file included from ../../../src/tools/do_dssp.c:49: At top level: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/tools/do_dssp.c:48: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/do_dssp.c:47: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlist.lo ../../../src/tools/dlist.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/dlist.c -fPIC -DPIC -o .libs/dlist.o In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/tools/dlist.c:44: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o eigio.lo ../../../src/tools/eigio.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/eigio.c -fPIC -DPIC -o .libs/eigio.o In file included from ../../../src/tools/eigio.c:41: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/eigio.c:41: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o expfit.lo ../../../src/tools/expfit.c mkdir .libs mkdir: cannot create directory '.libs': File exists x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/expfit.c -fPIC -DPIC -o .libs/expfit.o In file included from ../../../src/tools/expfit.c:49: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/expfit.c:49: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/tools/expfit.c:48: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o lsq.lo ../../../src/tools/lsq.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/lsq.c -fPIC -DPIC -o .libs/lsq.o In file included from ../../../src/tools/lsq.c:42: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/lsq.c:42: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/tools/lsq.c:41: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o levenmar.lo ../../../src/tools/levenmar.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/levenmar.c -fPIC -DPIC -o .libs/levenmar.o ../../../src/tools/levenmar.c:224:13: warning: 'free_convert_matrix' defined but not used [-Wunused-function] static void free_convert_matrix(real **b, int nrl) ^~~~~~~~~~~~~~~~~~~ ../../../src/tools/levenmar.c:208:15: warning: 'convert_matrix' defined but not used [-Wunused-function] static real **convert_matrix(real *a, int nrl, int nrh, int ncl, int nch) ^~~~~~~~~~~~~~ ../../../src/tools/levenmar.c:201:13: warning: 'free_submatrix' defined but not used [-Wunused-function] static void free_submatrix(real **b, int nrl) ^~~~~~~~~~~~~~ ../../../src/tools/levenmar.c:191:13: warning: 'free_imatrix' defined but not used [-Wunused-function] static void free_imatrix(int **m, int nrl, int nrh, int ncl) ^~~~~~~~~~~~ ../../../src/tools/levenmar.c:183:13: warning: 'free_dmatrix' defined but not used [-Wunused-function] static void free_dmatrix(double **m, int nrl, int nrh, int ncl) ^~~~~~~~~~~~ ../../../src/tools/levenmar.c:168:13: warning: 'free_dvector' defined but not used [-Wunused-function] static void free_dvector(int *v, int nl) ^~~~~~~~~~~~ ../../../src/tools/levenmar.c:141:15: warning: 'submatrix' defined but not used [-Wunused-function] static real **submatrix(real **a, int oldrl, int oldrh, int oldcl, ^~~~~~~~~ ../../../src/tools/levenmar.c:123:14: warning: 'imatrix1' defined but not used [-Wunused-function] static int **imatrix1(int nrl, int nrh, int ncl, int nch) ^~~~~~~~ ../../../src/tools/levenmar.c:106:17: warning: 'dmatrix' defined but not used [-Wunused-function] static double **dmatrix(int nrl, int nrh, int ncl, int nch) ^~~~~~~ ../../../src/tools/levenmar.c:78:16: warning: 'dvector' defined but not used [-Wunused-function] static double *dvector(int nl, int nh) ^~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o cmat.lo ../../../src/tools/cmat.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/cmat.c -fPIC -DPIC -o .libs/cmat.o make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o eigensolver.lo ../../../src/tools/eigensolver.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/eigensolver.c -fPIC -DPIC -o .libs/eigensolver.o ../../../src/tools/eigensolver.c: In function 'eigensolver': ../../../src/tools/eigensolver.c:65:16: warning: unused variable 'iu' [-Wunused-variable] int il,iu,m,iw0,info; ^~ ../../../src/tools/eigensolver.c:65:13: warning: unused variable 'il' [-Wunused-variable] int il,iu,m,iw0,info; ^~ ../../../src/tools/eigensolver.c: In function 'sparse_eigensolver': ../../../src/tools/eigensolver.c:296:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(i=0;i<11;i++) ^~~ ../../../src/tools/eigensolver.c:299:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' iparam[0] = 1; /* Don't use explicit shifts */ ^~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o anadih.lo ../../../src/tools/anadih.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/anadih.c -fPIC -DPIC -o .libs/anadih.o In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/tools/anadih.c:51: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/anadih.c:50: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/anadih.c:50: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o autocorr.lo ../../../src/tools/autocorr.c mkdir .libs x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/autocorr.c -fPIC -DPIC -o .libs/autocorr.o In file included from ../../../include/gmx_fft.h:41, from ../../../src/tools/correl.h:40, from ../../../src/tools/autocorr.c:53: ../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function] static t_complex cdiv(t_complex teller,t_complex noemer) ^~~~ ../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function] static t_complex csub(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function] static t_complex cadd(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function] static t_complex rcexp(real r) ^~~~~ ../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable] static t_complex cnul = { 0.0, 0.0 }; ^~~~ In file included from ../../../src/tools/autocorr.c:51: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/autocorr.c:51: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/tools/autocorr.c:48: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o fitahx.lo ../../../src/tools/fitahx.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/fitahx.c -fPIC -DPIC -o .libs/fitahx.o In file included from ../../../src/tools/fitahx.c:41: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/fitahx.c:41: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_bond.lo ../../../src/tools/gmx_bond.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_bond.c -fPIC -DPIC -o .libs/gmx_bond.o In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_bond.c:51: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_bond.c:48: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_bond.c:45: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_bond.c:45: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o hxprops.lo ../../../src/tools/hxprops.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/hxprops.c -fPIC -DPIC -o .libs/hxprops.o ../../../src/tools/hxprops.c: In function 'ellipticity': ../../../src/tools/hxprops.c:85:14: warning: unused variable 'Xi' [-Wunused-variable] const real Xi=1.0; ^~ In file included from ../../../src/tools/hxprops.c:46: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/hxprops.c:46: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_angle.lo ../../../src/tools/gmx_angle.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_angle.c -fPIC -DPIC -o .libs/gmx_angle.o ../../../src/tools/gmx_angle.c: In function 'gmx_angle': ../../../src/tools/gmx_angle.c:147:14: warning: unused variable 'buf' [-Wunused-variable] char buf[80]; ^~~ ../../../src/tools/gmx_angle.c:143:38: warning: unused variable 'fraction' [-Wunused-variable] real t,aa,aver,aver2,aversig,fraction; /* fraction trans dihedrals */ ^~~~~~~~ ../../../src/tools/gmx_angle.c:143:16: warning: unused variable 'aa' [-Wunused-variable] real t,aa,aver,aver2,aversig,fraction; /* fraction trans dihedrals */ ^~ ../../../src/tools/gmx_angle.c:143:14: warning: unused variable 't' [-Wunused-variable] real t,aa,aver,aver2,aversig,fraction; /* fraction trans dihedrals */ ^ ../../../src/tools/gmx_angle.c:138:55: warning: unused variable 'angind' [-Wunused-variable] int i,j,total,nangles,natoms,nat2,first,last,angind; ^~~~~~ ../../../src/tools/gmx_angle.c:138:39: warning: unused variable 'nat2' [-Wunused-variable] int i,j,total,nangles,natoms,nat2,first,last,angind; ^~~~ ../../../src/tools/gmx_angle.c:138:32: warning: unused variable 'natoms' [-Wunused-variable] int i,j,total,nangles,natoms,nat2,first,last,angind; ^~~~~~ ../../../src/tools/gmx_angle.c:138:18: warning: unused variable 'total' [-Wunused-variable] int i,j,total,nangles,natoms,nat2,first,last,angind; ^~~~~ ../../../src/tools/gmx_angle.c:135:21: warning: unused variable 'Jc' [-Wunused-variable] real maxang,Jc,S2,norm_fac,maxstat; ^~ ../../../src/tools/gmx_angle.c:132:14: warning: unused variable 'status' [-Wunused-variable] int status,isize; ^~~~~~ ../../../src/tools/gmx_angle.c:131:14: warning: unused variable 'tmp' [-Wunused-variable] real tmp,dt; ^~~ In file included from ../../../src/tools/gmx_angle.c:49: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_angle.c:49: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/tools/gmx_angle.c:48: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_angle.c:47: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_bundle.lo ../../../src/tools/gmx_bundle.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_bundle.c -fPIC -DPIC -o .libs/gmx_bundle.o ../../../src/tools/gmx_bundle.c: In function 'dump_axes': ../../../src/tools/gmx_bundle.c:141:17: warning: unused variable 'end' [-Wunused-variable] int i,end; ^~~ ../../../src/tools/gmx_bundle.c: In function 'gmx_bundle': ../../../src/tools/gmx_bundle.c:210:16: warning: unused variable 'j' [-Wunused-variable] int i,j,gnx[MAX_ENDS]; ^ ../../../src/tools/gmx_bundle.c:208:14: warning: unused variable 'natoms' [-Wunused-variable] int natoms; ^~~~~~ ../../../src/tools/gmx_bundle.c:198:15: warning: unused variable 'out' [-Wunused-variable] FILE *out,*flen,*fdist,*fz,*ftilt,*ftiltr,*ftiltl; ^~~ In file included from ../../../src/tools/gmx_bundle.c:48: At top level: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_bundle.c:47: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_bundle.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_bundle.c:42: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_analyze.lo ../../../src/tools/gmx_analyze.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_analyze.c -fPIC -DPIC -o .libs/gmx_analyze.o ../../../src/tools/gmx_analyze.c: In function 'luzar_correl': ../../../src/tools/gmx_analyze.c:514:8: warning: unused variable 'weight' [-Wunused-variable] real weight,d2; ^~~~~~ ../../../src/tools/gmx_analyze.c:512:14: warning: unused variable 'tol' [-Wunused-variable] const real tol = 1e-8; ^~~ ../../../src/tools/gmx_analyze.c: In function 'gmx_analyze': ../../../src/tools/gmx_analyze.c:744:63: warning: unused variable 'bLuzarError' [-Wunused-variable] static bool bIntegrate=FALSE,bRegression=FALSE,bLuzar=FALSE,bLuzarError=FALSE; ^~~~~~~~~~~ At top level: ../../../src/tools/gmx_analyze.c:744:63: warning: 'bLuzarError' defined but not used [-Wunused-variable] ../../../src/tools/gmx_analyze.c:273:13: warning: 'anal_ee' defined but not used [-Wunused-function] static real anal_ee(real *parm,real T,real t) ^~~~~~~ In file included from ../../../src/tools/gmx_analyze.c:48: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_analyze.c:47: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_analyze.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_analyze.c:41: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nsc.lo ../../../src/tools/nsc.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/nsc.c -fPIC -DPIC -o .libs/nsc.o ../../../src/tools/nsc.c: In function 'make_unsp': ../../../src/tools/nsc.c:446:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (xpunsp) free(xpunsp); if (ico_wk) free(ico_wk); ^~ ../../../src/tools/nsc.c:446:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (xpunsp) free(xpunsp); if (ico_wk) free(ico_wk); ^~ ../../../src/tools/nsc.c: In function 'nsc_dclm_pbc': ../../../src/tools/nsc.c:652:21: warning: unused variable 'm' [-Wunused-variable] int ix,iy,iz,m; ^ ../../../src/tools/nsc.c:551:16: warning: unused variable 'jat_xx' [-Wunused-variable] int iat_xx,jat_xx; ^~~~~~ In file included from ../../../src/tools/nsc.c:48: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/nsc.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_covar.lo ../../../src/tools/gmx_covar.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_covar.c -fPIC -DPIC -o .libs/gmx_covar.o ../../../src/tools/gmx_covar.c: In function 'gmx_covar': ../../../src/tools/gmx_covar.c:120:30: warning: unused variable 'count' [-Wunused-variable] int natoms,nat,ndim,count,nframes0,nframes,nlevels; ^~~~~ ../../../src/tools/gmx_covar.c:119:24: warning: unused variable 'step' [-Wunused-variable] int ntopatoms,step; ^~~~ ../../../src/tools/gmx_covar.c:119:14: warning: unused variable 'ntopatoms' [-Wunused-variable] int ntopatoms,step; ^~~~~~~~~ ../../../src/tools/gmx_covar.c:109:21: warning: unused variable 'trjout' [-Wunused-variable] int status,trjout; ^~~~~~ In file included from ../../../src/tools/gmx_covar.c:50: At top level: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_covar.c:48: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_covar.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_covar.c:43: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_confrms.lo ../../../src/tools/gmx_confrms.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_confrms.c -fPIC -DPIC -o .libs/gmx_confrms.o ../../../src/tools/gmx_confrms.c: In function 'find_matching_names': ../../../src/tools/gmx_confrms.c:252:35: warning: unused variable 'atnm2' [-Wunused-variable] char *resnm1, *resnm2, *atnm1, *atnm2; ^~~~~ ../../../src/tools/gmx_confrms.c:252:27: warning: unused variable 'atnm1' [-Wunused-variable] char *resnm1, *resnm2, *atnm1, *atnm2; ^~~~~ ../../../src/tools/gmx_confrms.c:252:18: warning: unused variable 'resnm2' [-Wunused-variable] char *resnm1, *resnm2, *atnm1, *atnm2; ^~~~~~ ../../../src/tools/gmx_confrms.c:252:9: warning: unused variable 'resnm1' [-Wunused-variable] char *resnm1, *resnm2, *atnm1, *atnm2; ^~~~~~ ../../../src/tools/gmx_confrms.c:249:7: warning: unused variable 'r' [-Wunused-variable] int r,rnr1, rnr2, prnr1, prnr2; ^ ../../../src/tools/gmx_confrms.c:247:7: warning: unused variable 'i' [-Wunused-variable] int i, i1, i2, ii1, ii2, m1, m2; ^ ../../../src/tools/gmx_confrms.c: In function 'gmx_confrms': ../../../src/tools/gmx_confrms.c:407:17: warning: unused variable 'tmas2' [-Wunused-variable] real tmas1,tmas2; ^~~~~ ../../../src/tools/gmx_confrms.c:407:11: warning: unused variable 'tmas1' [-Wunused-variable] real tmas1,tmas2; ^~~~~ ../../../src/tools/gmx_confrms.c:404:13: warning: unused variable 'j' [-Wunused-variable] int i,j,m; ^ In file included from ../../../src/tools/gmx_confrms.c:56: At top level: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/tools/gmx_confrms.c:50: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_confrms.c:50: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_confrms.c:47: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_confrms.c:46: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_anaeig.lo ../../../src/tools/gmx_anaeig.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_anaeig.c -fPIC -DPIC -o .libs/gmx_anaeig.o ../../../src/tools/gmx_anaeig.c: In function 'calc_entropy_schlitter': ../../../src/tools/gmx_anaeig.c:98:10: warning: unused variable 'buf' [-Wunused-variable] char buf[256]; ^~~ ../../../src/tools/gmx_anaeig.c:97:16: warning: unused variable 'm' [-Wunused-variable] int i,j,k,m; ^ ../../../src/tools/gmx_anaeig.c:97:14: warning: unused variable 'k' [-Wunused-variable] int i,j,k,m; ^ ../../../src/tools/gmx_anaeig.c:97:12: warning: unused variable 'j' [-Wunused-variable] int i,j,k,m; ^ ../../../src/tools/gmx_anaeig.c:96:11: warning: unused variable 'indx' [-Wunused-variable] int *indx; ^~~~ ../../../src/tools/gmx_anaeig.c: In function 'compare': ../../../src/tools/gmx_anaeig.c:224:12: warning: unused variable 'nrow' [-Wunused-variable] int n,nrow; ^~~~ ../../../src/tools/gmx_anaeig.c: In function 'rmsf': ../../../src/tools/gmx_anaeig.c:692:9: warning: unused variable 'nrow' [-Wunused-variable] int nrow,g,v,i; ^~~~ ../../../src/tools/gmx_anaeig.c: In function 'gmx_anaeig': ../../../src/tools/gmx_anaeig.c:1015:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (i!=natoms) ^~ ../../../src/tools/gmx_anaeig.c:1017:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' printf("\n"); ^~~~~~ ../../../src/tools/gmx_anaeig.c:835:21: warning: unused variable 'step' [-Wunused-variable] int natoms,step; ^~~~ ../../../src/tools/gmx_anaeig.c:834:42: warning: unused variable 'lambda' [-Wunused-variable] real xid,totmass,*sqrtm,*w_rls,t,lambda; ^~~~~~ ../../../src/tools/gmx_anaeig.c:834:14: warning: unused variable 'xid' [-Wunused-variable] real xid,totmass,*sqrtm,*w_rls,t,lambda; ^~~ ../../../src/tools/gmx_anaeig.c:832:18: warning: unused variable 'xread' [-Wunused-variable] rvec *x,*xread,*xav1,*xav2,**eigvec1=NULL,**eigvec2=NULL; ^~~~~ ../../../src/tools/gmx_anaeig.c:832:15: warning: unused variable 'x' [-Wunused-variable] rvec *x,*xread,*xav1,*xav2,**eigvec1=NULL,**eigvec2=NULL; ^ ../../../src/tools/gmx_anaeig.c:825:21: warning: unused variable 'trjout' [-Wunused-variable] int status,trjout; ^~~~~~ ../../../src/tools/gmx_anaeig.c:825:14: warning: unused variable 'status' [-Wunused-variable] int status,trjout; ^~~~~~ ../../../src/tools/gmx_anaeig.c:824:15: warning: unused variable 'out' [-Wunused-variable] FILE *out; ^~~ In file included from ../../../src/tools/gmx_anaeig.c:53: At top level: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ In file included from ../../../src/tools/gmx_anaeig.c:49: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_anaeig.c:47: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_anaeig.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_anaeig.c:41: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_density.lo ../../../src/tools/gmx_density.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_density.c -fPIC -DPIC -o .libs/gmx_density.o ../../../src/tools/gmx_density.c: In function 'calc_density': ../../../src/tools/gmx_density.c:261:9: warning: unused variable 'buf' [-Wunused-variable] char *buf; /* for tmp. keeping atomname */ ^~~ ../../../src/tools/gmx_density.c:254:9: warning: unused variable 'j' [-Wunused-variable] i,j,n, /* loop indices */ ^ ../../../src/tools/gmx_density.c:253:9: warning: unused variable 'slCount' [-Wunused-variable] **slCount, /* nr. of atoms in one slice for a group */ ^~~~~~~ In file included from ../../../src/tools/gmx_density.c:52: At top level: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_density.c:49: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_density.c:49: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/tools/gmx_density.c:48: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_current.lo ../../../src/tools/gmx_current.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_current.c -fPIC -DPIC -o .libs/gmx_current.o ../../../src/tools/gmx_current.c: In function 'calc_mjdsp': ../../../src/tools/gmx_current.c:266:7: warning: unused variable 'rfr' [-Wunused-variable] real rfr; ^~~ ../../../src/tools/gmx_current.c:265:8: warning: unused variable 'rtmp' [-Wunused-variable] real rtmp; ^~~~ ../../../src/tools/gmx_current.c: In function 'dielectric': ../../../src/tools/gmx_current.c:338:8: warning: variable 'rest' set but not used [-Wunused-but-set-variable] real rest=0.0; ^~~~ ../../../src/tools/gmx_current.c:326:8: warning: unused variable 'qtmp' [-Wunused-variable] real qtmp; ^~~~ ../../../src/tools/gmx_current.c:308:13: warning: unused variable 'dm_d' [-Wunused-variable] real dm_s,dm_d; ^~~~ ../../../src/tools/gmx_current.c:308:8: warning: unused variable 'dm_s' [-Wunused-variable] real dm_s,dm_d; ^~~~ ../../../src/tools/gmx_current.c:298:8: warning: unused variable 'rfr' [-Wunused-variable] real rfr=0.0; ^~~ ../../../src/tools/gmx_current.c:293:33: warning: variable 'itrust' set but not used [-Wunused-but-set-variable] int valloc,nalloc,nfr,nvfr,m,itrust=0; ^~~~~~ ../../../src/tools/gmx_current.c:293:31: warning: unused variable 'm' [-Wunused-variable] int valloc,nalloc,nfr,nvfr,m,itrust=0; ^ ../../../src/tools/gmx_current.c:292:17: warning: unused variable 'f' [-Wunused-variable] int i,j,k,l,f; ^ ../../../src/tools/gmx_current.c:292:15: warning: unused variable 'l' [-Wunused-variable] int i,j,k,l,f; ^ ../../../src/tools/gmx_current.c:292:13: warning: unused variable 'k' [-Wunused-variable] int i,j,k,l,f; ^ ../../../src/tools/gmx_current.c: In function 'gmx_current': ../../../src/tools/gmx_current.c:720:15: warning: unused variable 'tfile' [-Wunused-variable] FILE *tfile=NULL; ^~~~~ ../../../src/tools/gmx_current.c:719:15: warning: unused variable 'outi' [-Wunused-variable] FILE *outi=NULL; ^~~~ ../../../src/tools/gmx_current.c:716:14: warning: unused variable 'lambda' [-Wunused-variable] real lambda; ^~~~~~ ../../../src/tools/gmx_current.c:715:13: warning: unused variable 't' [-Wunused-variable] real t; ^ ../../../src/tools/gmx_current.c:714:14: warning: unused variable 'step' [-Wunused-variable] int step; ^~~~ ../../../src/tools/gmx_current.c:713:21: warning: unused variable 'l' [-Wunused-variable] int i,j,k=0,l; ^ ../../../src/tools/gmx_current.c:713:17: warning: unused variable 'k' [-Wunused-variable] int i,j,k=0,l; ^ ../../../src/tools/gmx_current.c:713:15: warning: unused variable 'j' [-Wunused-variable] int i,j,k=0,l; ^ ../../../src/tools/gmx_current.c:711:12: warning: unused variable 'natoms' [-Wunused-variable] int natoms; ^~~~~~ ../../../src/tools/gmx_current.c:707:10: warning: variable 'bNEU' set but not used [-Wunused-but-set-variable] bool bNEU; ^~~~ ../../../src/tools/gmx_current.c:706:13: warning: variable 'bTop' set but not used [-Wunused-but-set-variable] bool bTop; ^~~~ In file included from ../../../src/tools/gmx_current.c:44: At top level: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_current.c:43: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_current.c:43: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_current.c:40: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_chi.lo ../../../src/tools/gmx_chi.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_chi.c -fPIC -DPIC -o .libs/gmx_chi.o ../../../src/tools/gmx_chi.c: In function 'histogramming': ../../../src/tools/gmx_chi.c:418:23: warning: unused variable 'his_aa1' [-Wunused-variable] int ***his_aa,**his_aa1,*histmp; ^~~~~~~ ../../../src/tools/gmx_chi.c: In function 'print_transitions': ../../../src/tools/gmx_chi.c:834:8: warning: variable 'nh' set but not used [-Wunused-but-set-variable] int nh[edMax]; ^~ ../../../src/tools/gmx_chi.c: In function 'gmx_chi': ../../../src/tools/gmx_chi.c:1098:16: warning: unused variable 'j' [-Wunused-variable] int i,j,**chi_lookup,*xity; ^ In file included from ../../../src/tools/gmx_chi.c:59: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../src/tools/gmx_chi.c:49: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/tools/gmx_chi.c:47: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_chi.c:44: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_chi.c:43: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../src/tools/gmx_chi.c: In function 'histogramming.isra.1': ../../../src/tools/gmx_chi.c:657:30: warning: '.xvg' directive writing 4 bytes into a region of size between 0 and 255 [-Wformat-overflow=] sprintf(sshisfile,"%s-%s.xvg",hisfile,sss[k]); ^~~~ In file included from /usr/include/stdio.h:862, from ../../../src/tools/gmx_chi.c:39: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 6 or more bytes (assuming 261) into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_densmap.lo ../../../src/tools/gmx_densmap.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_densmap.c -fPIC -DPIC -o .libs/gmx_densmap.o In file included from ../../../src/tools/gmx_densmap.c:50: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_densmap.c:48: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_densmap.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_densmap.c:43: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_dih.lo ../../../src/tools/gmx_dih.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_dih.c -fPIC -DPIC -o .libs/gmx_dih.o ../../../src/tools/gmx_dih.c:55:13: warning: 'dump_dih' defined but not used [-Wunused-function] static void dump_dih(int nframes,char *title,real time[],real dih[]) ^~~~~~~~ In file included from ../../../src/tools/gmx_dih.c:51: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_dih.c:51: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_dih.c:46: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_dih.c:43: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ ../../../src/tools/gmx_dih.c: In function 'gmx_dih': ../../../src/tools/gmx_dih.c:265:22: warning: '%d' directive writing between 1 and 10 bytes into a region of size 6 [-Wformat-overflow=] sprintf(buf,"dih-%d",i); ^~ ../../../src/tools/gmx_dih.c:265:17: note: directive argument in the range [0, 2147483647] sprintf(buf,"dih-%d",i); ^~~~~~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../src/tools/gmx_dih.c:41: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 6 and 15 bytes into a destination of size 10 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_dielectric.lo ../../../src/tools/gmx_dielectric.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_dielectric.c -fPIC -DPIC -o .libs/gmx_dielectric.o ../../../src/tools/gmx_dielectric.c: In function 'calc_nbegin': ../../../src/tools/gmx_dielectric.c:60:11: warning: unused variable 'dtt' [-Wunused-variable] real dt,dtt; ^~~ ../../../src/tools/gmx_dielectric.c:60:8: warning: unused variable 'dt' [-Wunused-variable] real dt,dtt; ^~ In file included from ../../../src/tools/gmx_dielectric.c:53: At top level: ../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function] static t_complex csub(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function] static t_complex cadd(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function] static t_complex rcexp(real r) ^~~~~ ../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable] static t_complex cnul = { 0.0, 0.0 }; ^~~~ In file included from ../../../src/tools/gmx_dielectric.c:51: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/tools/gmx_dielectric.c:47: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_dielectric.c:44: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_spatial.lo ../../../src/tools/gmx_spatial.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_spatial.c -fPIC -DPIC -o .libs/gmx_spatial.o ../../../src/tools/gmx_spatial.c: In function 'gmx_spatial': ../../../src/tools/gmx_spatial.c:131:21: warning: unused variable 'shx' [-Wunused-variable] rvec *xtop,*shx[26]; ^~~ ../../../src/tools/gmx_spatial.c:103:15: warning: unused variable 'bSHIFT' [-Wunused-variable] static bool bSHIFT=FALSE; ^~~~~~ At top level: ../../../src/tools/gmx_spatial.c:103:15: warning: 'bSHIFT' defined but not used [-Wunused-variable] In file included from ../../../src/tools/gmx_spatial.c:44: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_spatial.c:43: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_spatial.c:43: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_spatial.c:40: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ ../../../src/tools/gmx_spatial.c:38:14: warning: 'SRCID_template_c' defined but not used [-Wunused-variable] static char *SRCID_template_c = "$Id$"; ^~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_dist.lo ../../../src/tools/gmx_dist.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_dist.c -fPIC -DPIC -o .libs/gmx_dist.o ../../../src/tools/gmx_dist.c: In function 'gmx_dist': ../../../src/tools/gmx_dist.c:101:21: warning: unused variable 'fplt' [-Wunused-variable] FILE *fp=NULL,*fplt=NULL; ^~~~ ../../../src/tools/gmx_dist.c:93:11: warning: unused variable 'aid' [-Wunused-variable] atom_id aid; ^~~ ../../../src/tools/gmx_dist.c:87:17: warning: unused variable 'v' [-Wunused-variable] rvec *x=NULL,*v=NULL,dx; ^ In file included from ../../../src/tools/gmx_dist.c:48: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_dist.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_dist.c:46: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_dist.c:45: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_cluster.lo ../../../src/tools/gmx_cluster.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_cluster.c -fPIC -DPIC -o .libs/gmx_cluster.o ../../../src/tools/gmx_cluster.c: In function 'mark_clusters': ../../../src/tools/gmx_cluster.c:638:11: warning: unused variable 'v' [-Wunused-variable] int i,j,v; ^ ../../../src/tools/gmx_cluster.c: In function 'gmx_cluster': ../../../src/tools/gmx_cluster.c:1341:7: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(i=0; (ipdbinfo[ii0].pdbresnr,"%d",r0+1); ^~ ../../../src/tools/gmx_sas.c:152:44: note: directive argument in the range [-2147483647, 2147483647] sprintf(atoms->pdbinfo[ii0].pdbresnr,"%d",r0+1); ^~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../src/tools/gmx_sas.c:42: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 2 and 12 bytes into a destination of size 6 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_rmsdist.lo ../../../src/tools/gmx_rmsdist.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_rmsdist.c -fPIC -DPIC -o .libs/gmx_rmsdist.o ../../../src/tools/gmx_rmsdist.c: In function 'analyze_noe_equivalent': ../../../src/tools/gmx_rmsdist.c:249:11: warning: unused variable 'fp' [-Wunused-variable] FILE *fp; ^~ ../../../src/tools/gmx_rmsdist.c: In function 'gmx_rmsdist': ../../../src/tools/gmx_rmsdist.c:534:36: warning: unused variable 'gj' [-Wunused-variable] int natom,i,j,teller,gi,gj; ^~ ../../../src/tools/gmx_rmsdist.c:534:33: warning: unused variable 'gi' [-Wunused-variable] int natom,i,j,teller,gi,gj; ^~ ../../../src/tools/gmx_rmsdist.c:534:24: warning: unused variable 'j' [-Wunused-variable] int natom,i,j,teller,gi,gj; ^ In file included from ../../../src/tools/gmx_rmsdist.c:52: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_rmsdist.c:52: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_rmsdist.c:48: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_rmsdist.c:47: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_rdf.lo ../../../src/tools/gmx_rdf.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_rdf.c -fPIC -DPIC -o .libs/gmx_rdf.o ../../../src/tools/gmx_rdf.c: In function 'do_rdf': ../../../src/tools/gmx_rdf.c:168:23: warning: unused variable 'index_cm' [-Wunused-variable] atom_id **index,*index_cm=NULL; ^~~~~~~~ ../../../src/tools/gmx_rdf.c:167:21: warning: unused variable 'isize_cm' [-Wunused-variable] int *isize,isize_cm=0,nrdf=0,max_i,isize0,isize_g; ^~~~~~~~ ../../../src/tools/gmx_rdf.c:164:40: warning: unused variable 'n' [-Wunused-variable] int g,natoms,i,j,k,nbin,j0,j1,n,nframes; ^ ../../../src/tools/gmx_rdf.c:164:37: warning: unused variable 'j1' [-Wunused-variable] int g,natoms,i,j,k,nbin,j0,j1,n,nframes; ^~ ../../../src/tools/gmx_rdf.c:164:34: warning: unused variable 'j0' [-Wunused-variable] int g,natoms,i,j,k,nbin,j0,j1,n,nframes; ^~ ../../../src/tools/gmx_rdf.c:162:28: warning: unused variable 'outf2' [-Wunused-variable] char outf1[STRLEN],outf2[STRLEN]; ^~~~~ ../../../src/tools/gmx_rdf.c:162:14: warning: unused variable 'outf1' [-Wunused-variable] char outf1[STRLEN],outf2[STRLEN]; ^~~~~ In file included from ../../../include/fftgrid.h:46, from ../../../src/tools/gmx_rdf.c:57: At top level: ../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function] static t_complex cdiv(t_complex teller,t_complex noemer) ^~~~ ../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function] static t_complex csub(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function] static t_complex cadd(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function] static t_complex rcexp(real r) ^~~~~ ../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable] static t_complex cnul = { 0.0, 0.0 }; ^~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_rdf.c:52: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_rdf.c:50: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_rdf.c:47: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_rdf.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_sgangle.lo ../../../src/tools/gmx_sgangle.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_sgangle.c -fPIC -DPIC -o .libs/gmx_sgangle.o In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_sgangle.c:52: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_sgangle.c:50: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_sgangle.c:47: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_sgangle.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_rms.lo ../../../src/tools/gmx_rms.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_rms.c -fPIC -DPIC -o .libs/gmx_rms.o In file included from ../../../src/tools/gmx_rms.c:49: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_rms.c:49: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_rms.c:47: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_rms.c:46: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_sorient.lo ../../../src/tools/gmx_sorient.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_sorient.c -fPIC -DPIC -o .libs/gmx_sorient.o ../../../src/tools/gmx_sorient.c: In function 'gmx_sorient': ../../../src/tools/gmx_sorient.c:114:72: warning: unused variable 'mtot' [-Wunused-variable] real inp,outp,two_pi,nav,normfac,rmin2,rmax2,rcut,rcut2,r2,r,mass,mtot; ^~~~ ../../../src/tools/gmx_sorient.c:114:67: warning: unused variable 'mass' [-Wunused-variable] real inp,outp,two_pi,nav,normfac,rmin2,rmax2,rcut,rcut2,r2,r,mass,mtot; ^~~~ ../../../src/tools/gmx_sorient.c:114:20: warning: variable 'two_pi' set but not used [-Wunused-but-set-variable] real inp,outp,two_pi,nav,normfac,rmin2,rmax2,rcut,rcut2,r2,r,mass,mtot; ^~~~~~ ../../../src/tools/gmx_sorient.c:108:13: warning: unused variable 'j' [-Wunused-variable] int i,j,p,sa0,sa1,sa2,n,ntot,nf,m,*hist1,*hist2,*histn,nbin1,nbin2,nrbin; ^ In file included from ../../../src/tools/gmx_sorient.c:45: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_sorient.c:45: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/tools/gmx_sorient.c:43: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_sorient.c:41: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_sdf.lo ../../../src/tools/gmx_sdf.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_sdf.c -fPIC -DPIC -o .libs/gmx_sdf.o ../../../src/tools/gmx_sdf.c: In function 'do_sdf': ../../../src/tools/gmx_sdf.c:101:25: warning: unused variable 'bRefDone' [-Wunused-variable] bool bTop=FALSE,bRefDone=FALSE,bInGroup=FALSE; ^~~~~~~~ ../../../src/tools/gmx_sdf.c:97:17: warning: unused variable 'jx' [-Wunused-variable] atom_id ix,jx; ^~ ../../../src/tools/gmx_sdf.c:97:14: warning: unused variable 'ix' [-Wunused-variable] atom_id ix,jx; ^~ ../../../src/tools/gmx_sdf.c:92:17: warning: unused variable 'xcog' [-Wunused-variable] rvec *x,xcog,dx,*x_i1,xi,*x_refmol; ^~~~ ../../../src/tools/gmx_sdf.c:89:23: warning: variable 'hbox' set but not used [-Wunused-but-set-variable] real t,boxmin,hbox,normfac; ^~~~ ../../../src/tools/gmx_sdf.c:88:15: warning: unused variable 'index_ref' [-Wunused-variable] atom_id *index_ref=NULL; ^~~~~~~~~ ../../../src/tools/gmx_sdf.c:87:15: warning: unused variable 'index_cg' [-Wunused-variable] atom_id *index_cg=NULL; ^~~~~~~~ ../../../src/tools/gmx_sdf.c:85:24: warning: unused variable 'refc' [-Wunused-variable] int nrefmol=0,refc=0; ^~~~ ../../../src/tools/gmx_sdf.c:83:14: warning: unused variable 'isize_ref' [-Wunused-variable] int isize_ref=3; ^~~~~~~~~ ../../../src/tools/gmx_sdf.c:82:14: warning: unused variable 'isize_cg' [-Wunused-variable] int isize_cg=0; ^~~~~~~~ ../../../src/tools/gmx_sdf.c:75:41: warning: unused variable 'dest' [-Wunused-variable] int ng,natoms,i,j,k,l,X,Y,Z,lc,dest; ^~~~ ../../../src/tools/gmx_sdf.c:75:38: warning: unused variable 'lc' [-Wunused-variable] int ng,natoms,i,j,k,l,X,Y,Z,lc,dest; ^~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_sdf.c:33: At top level: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_sdf.c:31: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_sdf.c:28: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_sdf.c:28: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ ../../../src/tools/gmx_sdf.c:20:14: warning: 'SRCID_template_c' defined but not used [-Wunused-variable] static char *SRCID_template_c = "$Id$"; ^~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_spol.lo ../../../src/tools/gmx_spol.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_spol.c -fPIC -DPIC -o .libs/gmx_spol.o ../../../src/tools/gmx_spol.c: In function 'gmx_spol': ../../../src/tools/gmx_spol.c:165:28: warning: unused variable 'bPBC' [-Wunused-variable] static bool bCom = FALSE,bPBC = FALSE; ^~~~ ../../../src/tools/gmx_spol.c:131:13: warning: unused variable 'xtop' [-Wunused-variable] rvec *xtop,*x,xref,try,dx,dip,dir; ^~~~ ../../../src/tools/gmx_spol.c:127:12: warning: unused variable 'title' [-Wunused-variable] char title[STRLEN]; ^~~~~ At top level: ../../../src/tools/gmx_spol.c:165:28: warning: 'bPBC' defined but not used [-Wunused-variable] static bool bCom = FALSE,bPBC = FALSE; ^~~~ In file included from ../../../src/tools/gmx_spol.c:45: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_spol.c:45: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/tools/gmx_spol.c:43: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_spol.c:41: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_hbond.lo ../../../src/tools/gmx_hbond.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_hbond.c -fPIC -DPIC -o .libs/gmx_hbond.o ../../../src/tools/gmx_hbond.c: In function 'mk_hbmap': ../../../src/tools/gmx_hbond.c:182:10: warning: unused variable 'j' [-Wunused-variable] int i,j; ^ ../../../src/tools/gmx_hbond.c: In function 'add_frames': ../../../src/tools/gmx_hbond.c:194:14: warning: unused variable 'l' [-Wunused-variable] int i,j,k,l; ^ ../../../src/tools/gmx_hbond.c:194:12: warning: unused variable 'k' [-Wunused-variable] int i,j,k,l; ^ ../../../src/tools/gmx_hbond.c:194:10: warning: unused variable 'j' [-Wunused-variable] int i,j,k,l; ^ ../../../src/tools/gmx_hbond.c:194:8: warning: unused variable 'i' [-Wunused-variable] int i,j,k,l; ^ ../../../src/tools/gmx_hbond.c: In function 'search_donors': ../../../src/tools/gmx_hbond.c:543:14: warning: unused variable 'stop' [-Wunused-variable] bool stop; ^~~~ ../../../src/tools/gmx_hbond.c:539:22: warning: unused variable 'n' [-Wunused-variable] int i,j,nra,n; ^ ../../../src/tools/gmx_hbond.c:539:18: warning: unused variable 'nra' [-Wunused-variable] int i,j,nra,n; ^~~ ../../../src/tools/gmx_hbond.c: In function 'is_hbond': ../../../src/tools/gmx_hbond.c:900:19: warning: unused variable 'ihb' [-Wunused-variable] int h,hh,id,ja,ihb; ^~~ ../../../src/tools/gmx_hbond.c: In function 'merge_hb': ../../../src/tools/gmx_hbond.c:1021:44: warning: unused variable 'ogrp' [-Wunused-variable] int i,inrnew,indnew,j,ii,jj,m,id,ia,grp,ogrp,ntmp; ^~~~ ../../../src/tools/gmx_hbond.c:1021:40: warning: unused variable 'grp' [-Wunused-variable] int i,inrnew,indnew,j,ii,jj,m,id,ia,grp,ogrp,ntmp; ^~~ ../../../src/tools/gmx_hbond.c:1021:32: warning: unused variable 'm' [-Wunused-variable] int i,inrnew,indnew,j,ii,jj,m,id,ia,grp,ogrp,ntmp; ^ ../../../src/tools/gmx_hbond.c: In function 'do_nhb_dist': ../../../src/tools/gmx_hbond.c:1077:8: warning: unused variable 'nhb' [-Wunused-variable] h_id nhb; ^~~ ../../../src/tools/gmx_hbond.c: In function 'smooth_tail': ../../../src/tools/gmx_hbond.c:1439:9: warning: unused variable 'fp' [-Wunused-variable] FILE *fp; ^~ ../../../src/tools/gmx_hbond.c: In function 'analyse_corr': ../../../src/tools/gmx_hbond.c:1461:56: warning: unused variable 'dt' [-Wunused-variable] real Q=0,chi22,chi2,dg,dgp,tau_hb,dtau,tau_rlx,e_1,dt,sigma_k,sigma_kp,ddg; ^~ ../../../src/tools/gmx_hbond.c:1461:28: warning: unused variable 'dgp' [-Wunused-variable] real Q=0,chi22,chi2,dg,dgp,tau_hb,dtau,tau_rlx,e_1,dt,sigma_k,sigma_kp,ddg; ^~~ ../../../src/tools/gmx_hbond.c:1461:25: warning: unused variable 'dg' [-Wunused-variable] real Q=0,chi22,chi2,dg,dgp,tau_hb,dtau,tau_rlx,e_1,dt,sigma_k,sigma_kp,ddg; ^~ ../../../src/tools/gmx_hbond.c:1461:14: warning: variable 'chi22' set but not used [-Wunused-but-set-variable] real Q=0,chi22,chi2,dg,dgp,tau_hb,dtau,tau_rlx,e_1,dt,sigma_k,sigma_kp,ddg; ^~~~~ ../../../src/tools/gmx_hbond.c: In function 'do_hbac': ../../../src/tools/gmx_hbond.c:1585:27: warning: variable 'ngh' set but not used [-Wunused-but-set-variable] int nh,nhbonds,nhydro,ngh; ^~~ ../../../src/tools/gmx_hbond.c:1577:18: warning: unused variable 'nd' [-Wunused-variable] int i,j,k,m,n,nd,ihb,idist,n2,nn; ^~ ../../../src/tools/gmx_hbond.c:1577:16: warning: unused variable 'n' [-Wunused-variable] int i,j,k,m,n,nd,ihb,idist,n2,nn; ^ ../../../src/tools/gmx_hbond.c: In function 'gmx_hbond': ../../../src/tools/gmx_hbond.c:2051:30: warning: unused variable 'bin' [-Wunused-variable] int grp,nabin,nrbin,bin,resdist,ihb; ^~~ ../../../src/tools/gmx_hbond.c:2049:43: warning: unused variable 'was' [-Wunused-variable] bool bSelected,bHBmap,bStop,bTwo,new,was,bBox,bTric; ^~~ ../../../src/tools/gmx_hbond.c:2049:39: warning: unused variable 'new' [-Wunused-variable] bool bSelected,bHBmap,bStop,bTwo,new,was,bBox,bTric; ^~~ ../../../src/tools/gmx_hbond.c:2045:34: warning: unused variable 'ja' [-Wunused-variable] int h,i,j,k,l,start,end,id,ja,ogrp,nsel; ^~ ../../../src/tools/gmx_hbond.c:2045:31: warning: unused variable 'id' [-Wunused-variable] int h,i,j,k,l,start,end,id,ja,ogrp,nsel; ^~ ../../../src/tools/gmx_hbond.c:2045:27: warning: unused variable 'end' [-Wunused-variable] int h,i,j,k,l,start,end,id,ja,ogrp,nsel; ^~~ ../../../src/tools/gmx_hbond.c:2045:21: warning: unused variable 'start' [-Wunused-variable] int h,i,j,k,l,start,end,id,ja,ogrp,nsel; ^~~~~ ../../../src/tools/gmx_hbond.c:2045:19: warning: unused variable 'l' [-Wunused-variable] int h,i,j,k,l,start,end,id,ja,ogrp,nsel; ^ At top level: ../../../src/tools/gmx_hbond.c:372:13: warning: 'in_list' defined but not used [-Wunused-function] static bool in_list(atom_id selection,int isize,atom_id *index) ^~~~~~~ In file included from ../../../include/gmx_fft.h:41, from ../../../src/tools/correl.h:40, from ../../../src/tools/gmx_hbond.c:59: ../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function] static t_complex cdiv(t_complex teller,t_complex noemer) ^~~~ ../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function] static t_complex csub(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function] static t_complex cadd(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function] static t_complex rcexp(real r) ^~~~~ ../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable] static t_complex cnul = { 0.0, 0.0 }; ^~~~ In file included from ../../../src/tools/gmx_hbond.c:53: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_hbond.c:53: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/tools/gmx_hbond.c:43: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_hbond.c:42: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_tcaf.lo ../../../src/tools/gmx_tcaf.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_tcaf.c -fPIC -DPIC -o .libs/gmx_tcaf.o ../../../src/tools/gmx_tcaf.c: In function 'gmx_tcaf': ../../../src/tools/gmx_tcaf.c:274:16: warning: unused variable 'c1' [-Wunused-variable] real **c1,**tc; ^~ ../../../src/tools/gmx_tcaf.c:265:14: warning: unused variable 'bTPS' [-Wunused-variable] bool bTPS,bTop; /* ,bCubic; */ ^~~~ In file included from ../../../src/tools/gmx_tcaf.c:57: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../src/tools/gmx_tcaf.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/tools/gmx_tcaf.c:46: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_tcaf.c:43: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_velacc.lo ../../../src/tools/gmx_velacc.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_velacc.c -fPIC -DPIC -o .libs/gmx_velacc.o In file included from ../../../src/tools/gmx_velacc.c:57: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../src/tools/gmx_velacc.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/tools/gmx_velacc.c:46: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_velacc.c:43: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o correl.lo ../../../src/tools/correl.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/correl.c -fPIC -DPIC -o .libs/correl.o ../../../src/tools/correl.c: In function 'complex_mult': ../../../src/tools/correl.c:189:10: warning: unused variable 'no2' [-Wunused-variable] int i,no2,n_2,k; ^~~ In file included from ../../../include/gmx_fft.h:41, from ../../../src/tools/correl.c:43: At top level: ../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function] static t_complex cdiv(t_complex teller,t_complex noemer) ^~~~ ../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function] static t_complex csub(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function] static t_complex cadd(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function] static t_complex rcexp(real r) ^~~~~ ../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable] static t_complex cnul = { 0.0, 0.0 }; ^~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_mdmat.lo ../../../src/tools/gmx_mdmat.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_mdmat.c -fPIC -DPIC -o .libs/gmx_mdmat.o ../../../src/tools/gmx_mdmat.c: In function 'gmx_mdmat': ../../../src/tools/gmx_mdmat.c:193:14: warning: unused variable 'nr0' [-Wunused-variable] int nr0; ^~~ ../../../src/tools/gmx_mdmat.c:192:45: warning: unused variable 'it' [-Wunused-variable] int i,j,status,nres,natoms,nframes,it,trxnat; ^~ ../../../src/tools/gmx_mdmat.c:165:15: warning: unused variable 'bAtom' [-Wunused-variable] static bool bAtom=FALSE; ^~~~~ At top level: ../../../src/tools/gmx_mdmat.c:165:15: warning: 'bAtom' defined but not used [-Wunused-variable] In file included from ../../../src/tools/gmx_mdmat.c:49: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_mdmat.c:48: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_mdmat.c:44: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_mdmat.c:44: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_clustsize.lo ../../../src/tools/gmx_clustsize.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_clustsize.c -fPIC -DPIC -o .libs/gmx_clustsize.o ../../../src/tools/gmx_clustsize.c: In function 'clust_size': ../../../src/tools/gmx_clustsize.c:94:50: warning: unused variable 'n_y' [-Wunused-variable] int i,j,k,ai,aj,ak,ci,cj,nframe,nclust,n_x,n_y,max_size=0; ^~~ ../../../src/tools/gmx_clustsize.c:94:23: warning: unused variable 'ak' [-Wunused-variable] int i,j,k,ai,aj,ak,ci,cj,nframe,nclust,n_x,n_y,max_size=0; ^~ ../../../src/tools/gmx_clustsize.c:89:40: warning: unused variable 'nsame' [-Wunused-variable] int version,generation,sss,ii,jj,nsame; ^~~~~ ../../../src/tools/gmx_clustsize.c: In function 'gmx_clustsize': ../../../src/tools/gmx_clustsize.c:396:18: warning: unused variable 'bRDF' [-Wunused-variable] bool bSQ,bRDF; ^~~~ ../../../src/tools/gmx_clustsize.c:396:14: warning: unused variable 'bSQ' [-Wunused-variable] bool bSQ,bRDF; ^~~ In file included from ../../../include/pme.h:46, from ../../../src/tools/gmx_clustsize.c:62: At top level: ../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function] static t_complex cdiv(t_complex teller,t_complex noemer) ^~~~ ../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function] static t_complex csub(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function] static t_complex cadd(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function] static t_complex rcexp(real r) ^~~~~ ../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable] static t_complex cnul = { 0.0, 0.0 }; ^~~~ In file included from ../../../src/tools/gmx_clustsize.c:52: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_clustsize.c:50: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_clustsize.c:47: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_clustsize.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_helixorient.lo ../../../src/tools/gmx_helixorient.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_helixorient.c -fPIC -DPIC -o .libs/gmx_helixorient.o ../../../src/tools/gmx_helixorient.c: In function 'gmx_helixorient': ../../../src/tools/gmx_helixorient.c:125:14: warning: unused variable 'rotangle' [-Wunused-variable] real tmp,rotangle; ^~~~~~~~ ../../../src/tools/gmx_helixorient.c:107:10: warning: unused variable 'axes' [-Wunused-variable] rvec axes[3]; ^~~~ ../../../src/tools/gmx_helixorient.c:106:10: warning: unused variable 'axes_t0' [-Wunused-variable] rvec axes_t0[3]; ^~~~~~~ ../../../src/tools/gmx_helixorient.c:93:27: warning: unused variable 'vproj' [-Wunused-variable] rvec v1,v2,p1,p2,vtmp,vproj; ^~~~~ ../../../src/tools/gmx_helixorient.c:93:22: warning: unused variable 'vtmp' [-Wunused-variable] rvec v1,v2,p1,p2,vtmp,vproj; ^~~~ ../../../src/tools/gmx_helixorient.c:93:19: warning: unused variable 'p2' [-Wunused-variable] rvec v1,v2,p1,p2,vtmp,vproj; ^~ ../../../src/tools/gmx_helixorient.c:93:16: warning: unused variable 'p1' [-Wunused-variable] rvec v1,v2,p1,p2,vtmp,vproj; ^~ ../../../src/tools/gmx_helixorient.c:92:10: warning: unused variable 'averageaxis' [-Wunused-variable] rvec averageaxis; ^~~~~~~~~~~ ../../../src/tools/gmx_helixorient.c:86:9: warning: unused variable 'd' [-Wunused-variable] int d,i,j,teller=0; ^ ../../../src/tools/gmx_helixorient.c:80:18: warning: unused variable 'dx' [-Wunused-variable] rvec *x=NULL,dx; ^~ In file included from ../../../src/tools/gmx_helixorient.c:48: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_helixorient.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_helixorient.c:46: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_helixorient.c:45: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_traj.lo ../../../src/tools/gmx_traj.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_traj.c -fPIC -DPIC -o .libs/gmx_traj.o ../../../src/tools/gmx_traj.c: In function 'write_pdb_bfac': ../../../src/tools/gmx_traj.c:337:11: warning: unused variable 'bOne' [-Wunused-variable] bool bOne; ^~~~ ../../../src/tools/gmx_traj.c: In function 'gmx_traj': ../../../src/tools/gmx_traj.c:525:18: warning: unused variable 'n' [-Wunused-variable] int i,j,n; ^ In file included from ../../../src/tools/gmx_traj.c:49: At top level: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_traj.c:47: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_traj.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_traj.c:42: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_nmtraj.lo ../../../src/tools/gmx_nmtraj.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_nmtraj.c -fPIC -DPIC -o .libs/gmx_nmtraj.o ../../../src/tools/gmx_nmtraj.c: In function 'gmx_nmtraj': ../../../src/tools/gmx_nmtraj.c:129:14: warning: variable 'dum' set but not used [-Wunused-but-set-variable] real dum; ^~~ ../../../src/tools/gmx_nmtraj.c:124:14: warning: unused variable 'found' [-Wunused-variable] bool found; ^~~~~ ../../../src/tools/gmx_nmtraj.c:123:25: warning: unused variable 'sum' [-Wunused-variable] real omega,Ekin,sum,m,vel; ^~~ ../../../src/tools/gmx_nmtraj.c:121:15: warning: unused variable 'out_eigval' [-Wunused-variable] real *out_eigval; ^~~~~~~~~~ ../../../src/tools/gmx_nmtraj.c:115:14: warning: unused variable 'neigval' [-Wunused-variable] int neigval; ^~~~~~~ ../../../src/tools/gmx_nmtraj.c:113:14: warning: unused variable 'grpname' [-Wunused-variable] char * grpname; ^~~~~~~ ../../../src/tools/gmx_nmtraj.c:111:14: warning: unused variable 'indexfile' [-Wunused-variable] char * indexfile; ^~~~~~~~~ ../../../src/tools/gmx_nmtraj.c:109:30: warning: unused variable 'v' [-Wunused-variable] int i,j,k,kmode,d,s,v; ^ ../../../src/tools/gmx_nmtraj.c:109:28: warning: unused variable 's' [-Wunused-variable] int i,j,k,kmode,d,s,v; ^ ../../../src/tools/gmx_nmtraj.c:105:15: warning: unused variable 'eigvalnr' [-Wunused-variable] int *eigvalnr; ^~~~~~~~ In file included from ../../../src/tools/gmx_nmtraj.c:54: At top level: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/tools/gmx_nmtraj.c:50: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_nmtraj.c:49: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_nmtraj.c:49: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_nmtraj.c:43: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_trjorder.lo ../../../src/tools/gmx_trjorder.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_trjorder.c -fPIC -DPIC -o .libs/gmx_trjorder.o In file included from ../../../src/tools/gmx_trjorder.c:49: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_trjorder.c:47: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_trjorder.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_trjorder.c:42: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_trjcat.lo ../../../src/tools/gmx_trjcat.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_trjcat.c -fPIC -DPIC -o .libs/gmx_trjcat.o ../../../src/tools/gmx_trjcat.c: In function 'scan_trj_files': ../../../src/tools/gmx_trjcat.c:78:8: warning: unused variable 't' [-Wunused-variable] real t; ^ ../../../src/tools/gmx_trjcat.c: In function 'gmx_trjcat': ../../../src/tools/gmx_trjcat.c:392:58: warning: unused variable 'last_ok_step' [-Wunused-variable] int earliersteps,nfile_in,nfile_out,*cont_type,last_ok_step; ^~~~~~~~~~~~ ../../../src/tools/gmx_trjcat.c:388:34: warning: unused variable 'in_file' [-Wunused-variable] char **fnms,**fnms_out,*in_file,*out_file; ^~~~~~~ ../../../src/tools/gmx_trjcat.c:385:19: warning: unused variable 'v' [-Wunused-variable] rvec *x,*v; ^ ../../../src/tools/gmx_trjcat.c:385:16: warning: unused variable 'x' [-Wunused-variable] rvec *x,*v; ^ ../../../src/tools/gmx_trjcat.c:384:53: warning: unused variable 'trjout' [-Wunused-variable] int status,ftpin,i,frame,frame_out,step=0,trjout=0; ^~~~~~ ../../../src/tools/gmx_trjcat.c:384:22: warning: unused variable 'ftpin' [-Wunused-variable] int status,ftpin,i,frame,frame_out,step=0,trjout=0; ^~~~~ In file included from ../../../src/tools/gmx_trjcat.c:56: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_trjcat.c:56: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/tools/gmx_trjcat.c:52: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_trjcat.c:50: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_trjcat.c:46: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_sham.lo ../../../src/tools/gmx_sham.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_sham.c -fPIC -DPIC -o .libs/gmx_sham.o ../../../src/tools/gmx_sham.c: In function 'do_sham': ../../../src/tools/gmx_sham.c:286:32: warning: unused variable 'd' [-Wunused-variable] int i,j,k,imin,len,index,d,*nbin,*bindex,bi; ^ ../../../src/tools/gmx_sham.c: In function 'gmx_sham': ../../../src/tools/gmx_sham.c:778:41: warning: unused variable 'db' [-Wunused-variable] double *av,*sig,cum1,cum2,cum3,cum4,db; ^~ ../../../src/tools/gmx_sham.c:778:36: warning: unused variable 'cum4' [-Wunused-variable] double *av,*sig,cum1,cum2,cum3,cum4,db; ^~~~ ../../../src/tools/gmx_sham.c:778:31: warning: unused variable 'cum3' [-Wunused-variable] double *av,*sig,cum1,cum2,cum3,cum4,db; ^~~~ ../../../src/tools/gmx_sham.c:778:26: warning: unused variable 'cum2' [-Wunused-variable] double *av,*sig,cum1,cum2,cum3,cum4,db; ^~~~ ../../../src/tools/gmx_sham.c:778:21: warning: unused variable 'cum1' [-Wunused-variable] double *av,*sig,cum1,cum2,cum3,cum4,db; ^~~~ ../../../src/tools/gmx_sham.c:778:17: warning: unused variable 'sig' [-Wunused-variable] double *av,*sig,cum1,cum2,cum3,cum4,db; ^~~ ../../../src/tools/gmx_sham.c:778:13: warning: unused variable 'av' [-Wunused-variable] double *av,*sig,cum1,cum2,cum3,cum4,db; ^~ ../../../src/tools/gmx_sham.c:776:66: warning: unused variable 'error' [-Wunused-variable] real **val,**et_val,**dt_val,*t,*e_t,e_dt,d_dt,*d_t,dt,tot,error; ^~~~~ ../../../src/tools/gmx_sham.c:776:62: warning: unused variable 'tot' [-Wunused-variable] real **val,**et_val,**dt_val,*t,*e_t,e_dt,d_dt,*d_t,dt,tot,error; ^~~ ../../../src/tools/gmx_sham.c:775:51: warning: unused variable 'j' [-Wunused-variable] int n,e_n,d_n,nlast,s,nset,e_nset,d_nset,i,j=0,*idim,*ibox; ^ ../../../src/tools/gmx_sham.c:775:28: warning: unused variable 's' [-Wunused-variable] int n,e_n,d_n,nlast,s,nset,e_nset,d_nset,i,j=0,*idim,*ibox; ^ ../../../src/tools/gmx_sham.c:775:22: warning: unused variable 'nlast' [-Wunused-variable] int n,e_n,d_n,nlast,s,nset,e_nset,d_nset,i,j=0,*idim,*ibox; ^~~~~ ../../../src/tools/gmx_sham.c:774:13: warning: unused variable 'out' [-Wunused-variable] FILE *out; ^~~ ../../../src/tools/gmx_sham.c:728:35: warning: unused variable 'resol' [-Wunused-variable] static int nsets_in=1,nb_min=4,resol=10,nlevels=25; ^~~~~ ../../../src/tools/gmx_sham.c:728:26: warning: unused variable 'nb_min' [-Wunused-variable] static int nsets_in=1,nb_min=4,resol=10,nlevels=25; ^~~~~~ ../../../src/tools/gmx_sham.c:723:15: warning: unused variable 'bShamEner' [-Wunused-variable] static bool bShamEner=TRUE,bSham=TRUE; ^~~~~~~~~ ../../../src/tools/gmx_sham.c:722:56: warning: unused variable 'bPower' [-Wunused-variable] static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE; ^~~~~~ ../../../src/tools/gmx_sham.c:722:41: warning: unused variable 'bEeFitAc' [-Wunused-variable] static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE; ^~~~~~~~ ../../../src/tools/gmx_sham.c:722:28: warning: unused variable 'bEENLC' [-Wunused-variable] static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE; ^~~~~~ ../../../src/tools/gmx_sham.c:722:15: warning: unused variable 'bEESEF' [-Wunused-variable] static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE; ^~~~~~ ../../../src/tools/gmx_sham.c:721:66: warning: unused variable 'bXYdy' [-Wunused-variable] static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE; ^~~~~ ../../../src/tools/gmx_sham.c:721:50: warning: unused variable 'bAverCorr' [-Wunused-variable] static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE; ^~~~~~~~~ ../../../src/tools/gmx_sham.c:721:38: warning: unused variable 'bSubAv' [-Wunused-variable] static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE; ^~~~~~ ../../../src/tools/gmx_sham.c:720:36: warning: unused variable 'filtlen' [-Wunused-variable] static real tb=-1,te=-1,frac=0.5,filtlen=0,binwidth=0.1; ^~~~~~~ ../../../src/tools/gmx_sham.c:720:27: warning: unused variable 'frac' [-Wunused-variable] static real tb=-1,te=-1,frac=0.5,filtlen=0,binwidth=0.1; ^~~~ At top level: ../../../src/tools/gmx_sham.c:720:27: warning: 'frac' defined but not used [-Wunused-variable] ../../../src/tools/gmx_sham.c:720:36: warning: 'filtlen' defined but not used [-Wunused-variable] static real tb=-1,te=-1,frac=0.5,filtlen=0,binwidth=0.1; ^~~~~~~ ../../../src/tools/gmx_sham.c:721:38: warning: 'bSubAv' defined but not used [-Wunused-variable] static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE; ^~~~~~ ../../../src/tools/gmx_sham.c:721:50: warning: 'bAverCorr' defined but not used [-Wunused-variable] static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE; ^~~~~~~~~ ../../../src/tools/gmx_sham.c:721:66: warning: 'bXYdy' defined but not used [-Wunused-variable] static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE; ^~~~~ ../../../src/tools/gmx_sham.c:722:15: warning: 'bEESEF' defined but not used [-Wunused-variable] static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE; ^~~~~~ ../../../src/tools/gmx_sham.c:722:28: warning: 'bEENLC' defined but not used [-Wunused-variable] static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE; ^~~~~~ ../../../src/tools/gmx_sham.c:722:41: warning: 'bEeFitAc' defined but not used [-Wunused-variable] static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE; ^~~~~~~~ ../../../src/tools/gmx_sham.c:722:56: warning: 'bPower' defined but not used [-Wunused-variable] static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE; ^~~~~~ ../../../src/tools/gmx_sham.c:723:15: warning: 'bShamEner' defined but not used [-Wunused-variable] static bool bShamEner=TRUE,bSham=TRUE; ^~~~~~~~~ ../../../src/tools/gmx_sham.c:728:26: warning: 'nb_min' defined but not used [-Wunused-variable] static int nsets_in=1,nb_min=4,resol=10,nlevels=25; ^~~~~~ ../../../src/tools/gmx_sham.c:728:35: warning: 'resol' defined but not used [-Wunused-variable] static int nsets_in=1,nb_min=4,resol=10,nlevels=25; ^~~~~ In file included from ../../../src/tools/gmx_sham.c:56: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/tools/gmx_sham.c:48: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_sham.c:47: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_sham.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_sham.c:41: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_genbox.lo ../../../src/tools/gmx_genbox.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_genbox.c -fPIC -DPIC -o .libs/gmx_genbox.o ../../../src/tools/gmx_genbox.c: In function 'gmx_genbox': ../../../src/tools/gmx_genbox.c:665:11: warning: unused variable 'pbc' [-Wunused-variable] t_pbc pbc; ^~~ In file included from ../../../src/tools/gmx_genbox.c:61: At top level: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_genbox.c:57: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_genbox.c:55: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_genbox.c:55: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/tools/gmx_genbox.c:47: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ ../../../src/tools/gmx_genbox.c: In function 'update_top.constprop': ../../../src/tools/gmx_genbox.c:538:19: warning: ' in water ' directive writing 10 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(buf,"%s in water\n",buf2); ^~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../src/tools/gmx_genbox.c:41: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 11 and 4106 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_wham.lo ../../../src/tools/gmx_wham.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_wham.c -fPIC -DPIC -o .libs/gmx_wham.o In file included from ../../../src/tools/gmx_wham.c:48: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_wham.c:47: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_wham.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_wham.c:44: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ ../../../src/tools/gmx_wham.c: In function 'open_pdo_pipe': ../../../src/tools/gmx_wham.c:1201:27: warning: ' -c < ' directive writing 6 bytes into a region of size between 1 and 1024 [-Wformat-overflow=] sprintf(Buffer,"%s -c < %s",gunzip,fn); ^~~~~~ In file included from /usr/include/stdio.h:862, from ../../../src/tools/gmx_wham.c:37: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 7 or more bytes (assuming 1030) into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_genion.lo ../../../src/tools/gmx_genion.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_genion.c -fPIC -DPIC -o .libs/gmx_genion.o ../../../src/tools/gmx_genion.c: In function 'insert_ion': ../../../src/tools/gmx_genion.c:72:8: warning: unused variable 'xei' [-Wunused-variable] rvec xei,dx; ^~~ ../../../src/tools/gmx_genion.c:70:29: warning: unused variable 'm' [-Wunused-variable] int i,ii,ei,owater,wlast,m,nw; ^ ../../../src/tools/gmx_genion.c:70:23: warning: unused variable 'wlast' [-Wunused-variable] int i,ii,ei,owater,wlast,m,nw; ^~~~~ ../../../src/tools/gmx_genion.c:70:16: warning: unused variable 'owater' [-Wunused-variable] int i,ii,ei,owater,wlast,m,nw; ^~~~~~ In file included from ../../../src/tools/gmx_genion.c:54: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../src/tools/gmx_genion.c:51: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/tools/gmx_genion.c:48: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_genion.c:46: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_genion.c:41: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_genconf.lo ../../../src/tools/gmx_genconf.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_genconf.c -fPIC -DPIC -o .libs/gmx_genconf.o ../../../src/tools/gmx_genconf.c:93:13: warning: 'move_x' defined but not used [-Wunused-function] static void move_x(int natoms,rvec x[],matrix box) ^~~~~~ In file included from ../../../src/tools/gmx_genconf.c:48: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_genconf.c:47: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_genconf.c:42: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_genconf.c:40: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_genpr.lo ../../../src/tools/gmx_genpr.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_genpr.c -fPIC -DPIC -o .libs/gmx_genpr.o In file included from ../../../src/tools/gmx_genpr.c:50: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_genpr.c:50: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/tools/gmx_genpr.c:44: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_genpr.c:42: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_editconf.lo ../../../src/tools/gmx_editconf.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_editconf.c -fPIC -DPIC -o .libs/gmx_editconf.o ../../../src/tools/gmx_editconf.c: In function 'calc_geom': ../../../src/tools/gmx_editconf.c:103:12: warning: unused variable 'grpnames' [-Wunused-variable] char *grpnames; ^~~~~~~~ ../../../src/tools/gmx_editconf.c: In function 'set_pdb_conf_bfac': ../../../src/tools/gmx_editconf.c:195:9: warning: unused variable 'out' [-Wunused-variable] FILE *out; ^~~ ../../../src/tools/gmx_editconf.c: In function 'gmx_editconf': ../../../src/tools/gmx_editconf.c:518:35: warning: unused variable 'zcent' [-Wunused-variable] real xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw; ^~~~~ ../../../src/tools/gmx_editconf.c:518:29: warning: unused variable 'ycent' [-Wunused-variable] real xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw; ^~~~~ ../../../src/tools/gmx_editconf.c:518:23: warning: unused variable 'xcent' [-Wunused-variable] real xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw; ^~~~~ ../../../src/tools/gmx_editconf.c:518:20: warning: unused variable 'zs' [-Wunused-variable] real xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw; ^~ ../../../src/tools/gmx_editconf.c:518:17: warning: unused variable 'ys' [-Wunused-variable] real xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw; ^~ ../../../src/tools/gmx_editconf.c:518:14: warning: unused variable 'xs' [-Wunused-variable] real xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw; ^~ ../../../src/tools/gmx_editconf.c:516:38: warning: unused variable 'bCubic' [-Wunused-variable] bool bIndex,bSetSize,bSetAng,bCubic,bDist,bSetCenter; ^~~~~~ ../../../src/tools/gmx_editconf.c:512:30: warning: unused variable 'tindex' [-Wunused-variable] atom_id *index,*sindex,*tindex; ^~~~~~ ../../../src/tools/gmx_editconf.c:511:26: warning: unused variable 'tsize' [-Wunused-variable] int isize,ssize,tsize; ^~~~~ ../../../src/tools/gmx_editconf.c:456:33: warning: unused variable 'to_diam' [-Wunused-variable] static real dist=0.0,rbox=0.0,to_diam=0.0; ^~~~~~~ ../../../src/tools/gmx_editconf.c:456:24: warning: unused variable 'rbox' [-Wunused-variable] static real dist=0.0,rbox=0.0,to_diam=0.0; ^~~~ At top level: ../../../src/tools/gmx_editconf.c:456:24: warning: 'rbox' defined but not used [-Wunused-variable] ../../../src/tools/gmx_editconf.c:456:33: warning: 'to_diam' defined but not used [-Wunused-variable] static real dist=0.0,rbox=0.0,to_diam=0.0; ^~~~~~~ ../../../src/tools/gmx_editconf.c:79:14: warning: 'pdbtp' defined but not used [-Wunused-variable] static char *pdbtp[epdbNR]={"ATOM ","HETATM"}; ^~~~~ In file included from ../../../src/tools/gmx_editconf.c:53: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_editconf.c:53: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_editconf.c:49: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_editconf.c:48: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_editconf.c:43: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_xpm2ps.lo ../../../src/tools/gmx_xpm2ps.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_xpm2ps.c -fPIC -DPIC -o .libs/gmx_xpm2ps.o ../../../src/tools/gmx_xpm2ps.c: In function 'xpm_mat': ../../../src/tools/gmx_xpm2ps.c:559:14: warning: unused variable 'k' [-Wunused-variable] int i,j,k,x,y,col; ^ ../../../src/tools/gmx_xpm2ps.c:559:12: warning: unused variable 'j' [-Wunused-variable] int i,j,k,x,y,col; ^ ../../../src/tools/gmx_xpm2ps.c:558:10: warning: unused variable 'buf' [-Wunused-variable] char buf[100]; ^~~ ../../../src/tools/gmx_xpm2ps.c: In function 'tick_spacing': ../../../src/tools/gmx_xpm2ps.c:599:18: warning: unused variable 'bFive' [-Wunused-variable] bool bTryAgain,bFive; ^~~~~ ../../../src/tools/gmx_xpm2ps.c: In function 'ps_mat': ../../../src/tools/gmx_xpm2ps.c:644:12: warning: unused variable 'j' [-Wunused-variable] int i,j,x,y,col,leg=0; ^ ../../../src/tools/gmx_xpm2ps.c: In function 'write_combined_matrix': ../../../src/tools/gmx_xpm2ps.c:919:14: warning: unused variable 'map' [-Wunused-variable] t_mapping *map=NULL; ^~~ ../../../src/tools/gmx_xpm2ps.c: In function 'gmx_xpm2ps': ../../../src/tools/gmx_xpm2ps.c:1127:56: warning: unused variable 'bAdd' [-Wunused-variable] static bool bFrame=TRUE,bZeroLine=FALSE,bYonce=FALSE,bAdd=FALSE; ^~~~ At top level: ../../../src/tools/gmx_xpm2ps.c:1127:56: warning: 'bAdd' defined but not used [-Wunused-variable] In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_xpm2ps.c:45: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_xpm2ps.c:42: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ ../../../src/tools/gmx_xpm2ps.c: In function 'ps_mat': ../../../src/tools/gmx_xpm2ps.c:346:22: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(buf,"%g",mat[i].axis_x[j]); ^ In file included from /usr/include/stdio.h:862, from ../../../include/string2.h:56, from ../../../src/tools/gmx_xpm2ps.c:41: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 2 and 14 bytes into a destination of size 12 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../src/tools/gmx_xpm2ps.c:374:22: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(buf,"%g",mat[i].axis_y[j]); ^ In file included from /usr/include/stdio.h:862, from ../../../include/string2.h:56, from ../../../src/tools/gmx_xpm2ps.c:41: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 2 and 14 bytes into a destination of size 12 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o editconf.o ../../../src/tools/editconf.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o eneconv.o ../../../src/tools/eneconv.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o genbox.o ../../../src/tools/genbox.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o genconf.o ../../../src/tools/genconf.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_wheel.lo ../../../src/tools/gmx_wheel.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_wheel.c -fPIC -DPIC -o .libs/gmx_wheel.o In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_wheel.c:55: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_wheel.c:52: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_wheel.c:49: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_wheel.c:49: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_trjconv.lo ../../../src/tools/gmx_trjconv.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_trjconv.c -fPIC -DPIC -o .libs/gmx_trjconv.o ../../../src/tools/gmx_trjconv.c: In function 'calc_pbc_cluster': ../../../src/tools/gmx_trjconv.c:89:34: warning: unused variable 'is' [-Wunused-variable] int m,i,j,j0,j1,jj,ai,iter,is; ^~ ../../../src/tools/gmx_trjconv.c: In function 'put_molecule_com_in_box': ../../../src/tools/gmx_trjconv.c:252:29: warning: unused variable 'dx' [-Wunused-variable] rvec com,new_com,shift,dx,box_center; ^~ ../../../src/tools/gmx_trjconv.c: In function 'put_residue_com_in_box': ../../../src/tools/gmx_trjconv.c:303:37: warning: variable 'res_nat' set but not used [-Wunused-but-set-variable] atom_id i, j, res_start, res_end, res_nat; ^~~~~~~ ../../../src/tools/gmx_trjconv.c: In function 'gmx_trjconv': ../../../src/tools/gmx_trjconv.c:726:16: warning: unused variable 'xdr' [-Wunused-variable] int xdr=0; ^~~ ../../../src/tools/gmx_trjconv.c:725:42: warning: unused variable 'command' [-Wunused-variable] char top_title[256],title[256],command[256],filemode[5]; ^~~~~~~ ../../../src/tools/gmx_trjconv.c:715:21: warning: variable 'bFitXY' set but not used [-Wunused-but-set-variable] bool bFit,bFitXY,bPFit,bReset; ^~~~~~ ../../../src/tools/gmx_trjconv.c:707:25: warning: unused variable 'gn_rms' [-Wunused-variable] char *gn_fit,*gn_rms; ^~~~~~ ../../../src/tools/gmx_trjconv.c:706:26: warning: unused variable 'ind_rms' [-Wunused-variable] atom_id *ind_fit,*ind_rms; ^~~~~~~ ../../../src/tools/gmx_trjconv.c:705:21: warning: unused variable 'irms' [-Wunused-variable] int ifit,irms,my_clust=-1; ^~~~ ../../../src/tools/gmx_trjconv.c:695:55: warning: unused variable 'nre' [-Wunused-variable] int m,i,d,frame,outframe,natoms,nout,ncent,nre,newstep=0,model_nr; ^~~ ../../../src/tools/gmx_trjconv.c:694:23: warning: unused variable 'lambda' [-Wunused-variable] real xtcpr, lambda,*w_rls=NULL; ^~~~~~ ../../../src/tools/gmx_trjconv.c:694:16: warning: unused variable 'xtcpr' [-Wunused-variable] real xtcpr, lambda,*w_rls=NULL; ^~~~~ ../../../src/tools/gmx_trjconv.c:693:49: warning: unused variable 'dx' [-Wunused-variable] rvec *xp=NULL,x_shift,hbox,box_center,dx; ^~ ../../../src/tools/gmx_trjconv.c:693:38: warning: unused variable 'box_center' [-Wunused-variable] rvec *xp=NULL,x_shift,hbox,box_center,dx; ^~~~~~~~~~ In file included from ../../../src/tools/gmx_trjconv.c:57: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_trjconv.c:57: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/tools/gmx_trjconv.c:53: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_trjconv.c:51: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_trjconv.c:47: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ ../../../src/tools/gmx_trjconv.c: In function 'gmx_trjconv': ../../../src/tools/gmx_trjconv.c:1325:46: warning: '%s' directive writing up to 255 bytes into a region of size 233 [-Wformat-overflow=] sprintf(title,"Generated by trjconv : %s t= %9.5f", ^~ top_title,fr.time); ~~~~~~~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../include/typedefs.h:52, from ../../../include/macros.h:49, from ../../../src/tools/gmx_trjconv.c:42: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 37 and 599 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../src/tools/gmx_trjconv.c:1336:20: warning: ' t= ' directive writing 4 bytes into a region of size between 1 and 256 [-Wformat-overflow=] sprintf(title,"%s t= %9.5f",top_title,frout.time); ^~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../include/typedefs.h:52, from ../../../include/macros.h:49, from ../../../src/tools/gmx_trjconv.c:42: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 14 and 576 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o genrestr.o ../../../src/tools/genrestr.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_nmtraj.o ../../../src/tools/g_nmtraj.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o edittop.lo ../../../src/tools/edittop.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/edittop.c -fPIC -DPIC -o .libs/edittop.o ../../../src/tools/edittop.c: In function 'delete_from_block': ../../../src/tools/edittop.c:104:17: warning: unused variable 'k' [-Wunused-variable] int i,i1,j1,j,k; ^ ../../../src/tools/edittop.c:104:12: warning: unused variable 'j1' [-Wunused-variable] int i,i1,j1,j,k; ^~ ../../../src/tools/edittop.c: In function 'delete_atom': ../../../src/tools/edittop.c:161:7: warning: unused variable 'k' [-Wunused-variable] int k; ^ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_eneconv.lo ../../../src/tools/gmx_eneconv.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_eneconv.c -fPIC -DPIC -o .libs/gmx_eneconv.o ../../../src/tools/gmx_eneconv.c: In function 'gmx_eneconv': ../../../src/tools/gmx_eneconv.c:427:14: warning: unused variable 'ok' [-Wunused-variable] bool ok; ^~ ../../../src/tools/gmx_eneconv.c:426:35: warning: unused variable 'chptr' [-Wunused-variable] char inputstring[STRLEN],*chptr; ^~~~~ ../../../src/tools/gmx_eneconv.c:426:14: warning: unused variable 'inputstring' [-Wunused-variable] char inputstring[STRLEN],*chptr; ^~~~~~~~~~~ ../../../src/tools/gmx_eneconv.c:425:42: warning: unused variable 't1' [-Wunused-variable] real *readtime,*settime,timestep,t1,tadjust; ^~ ../../../src/tools/gmx_eneconv.c:421:42: warning: unused variable 'j' [-Wunused-variable] int nre,nremax,this_nre,nfile,i,j,kkk,nset,*set=NULL; ^ At top level: ../../../src/tools/gmx_eneconv.c:101:13: warning: 'same_time' defined but not used [-Wunused-function] static bool same_time(real t1,real t2) ^~~~~~~~~ In file included from ../../../src/tools/gmx_eneconv.c:48: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_eneconv.c:45: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o calcpot.lo ../../../src/tools/calcpot.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/calcpot.c -fPIC -DPIC -o .libs/calcpot.o ../../../src/tools/calcpot.c: In function 'c_tabpot': ../../../src/tools/calcpot.c:79:8: warning: unused variable 'qqO' [-Wunused-variable] real qqO,qj; ^~~ ../../../src/tools/calcpot.c:78:43: warning: unused variable 'rinv2O' [-Wunused-variable] real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O; ^~~~~~ ../../../src/tools/calcpot.c:78:24: warning: unused variable 'fsO' [-Wunused-variable] real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O; ^~~ ../../../src/tools/calcpot.c:78:20: warning: unused variable 'vcO' [-Wunused-variable] real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O; ^~~ ../../../src/tools/calcpot.c:78:16: warning: unused variable 'tzO' [-Wunused-variable] real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O; ^~~ ../../../src/tools/calcpot.c:78:12: warning: unused variable 'tyO' [-Wunused-variable] real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O; ^~~ ../../../src/tools/calcpot.c:78:8: warning: unused variable 'txO' [-Wunused-variable] real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O; ^~~ ../../../src/tools/calcpot.c:76:28: warning: unused variable 'fzO' [-Wunused-variable] real fxJ,fyJ,fzJ,fxO,fyO,fzO; ^~~ ../../../src/tools/calcpot.c:76:24: warning: unused variable 'fyO' [-Wunused-variable] real fxJ,fyJ,fzJ,fxO,fyO,fzO; ^~~ ../../../src/tools/calcpot.c:76:20: warning: unused variable 'fxO' [-Wunused-variable] real fxJ,fyJ,fzJ,fxO,fyO,fzO; ^~~ ../../../src/tools/calcpot.c:76:16: warning: unused variable 'fzJ' [-Wunused-variable] real fxJ,fyJ,fzJ,fxO,fyO,fzO; ^~~ ../../../src/tools/calcpot.c:76:12: warning: unused variable 'fyJ' [-Wunused-variable] real fxJ,fyJ,fzJ,fxO,fyO,fzO; ^~~ ../../../src/tools/calcpot.c:76:8: warning: unused variable 'fxJ' [-Wunused-variable] real fxJ,fyJ,fzJ,fxO,fyO,fzO; ^~~ ../../../src/tools/calcpot.c:75:38: warning: unused variable 'ggid' [-Wunused-variable] int ii,k,n,jnr,ii3,nj0,nj1,is3,j3,ggid; ^~~~ ../../../src/tools/calcpot.c:71:50: warning: unused variable 'FF' [-Wunused-variable] real r1,r1t,fijC,eps,eps2,Y,F,Fp,Geps,Heps2,VV,FF; ^~ ../../../src/tools/calcpot.c:71:15: warning: unused variable 'fijC' [-Wunused-variable] real r1,r1t,fijC,eps,eps2,Y,F,Fp,Geps,Heps2,VV,FF; ^~~~ ../../../src/tools/calcpot.c:70:14: warning: unused variable 'two' [-Wunused-variable] const real two = 2.000000; ^~~ ../../../src/tools/calcpot.c: In function 'calc_pot': ../../../src/tools/calcpot.c:176:15: warning: variable 'box_size' set but not used [-Wunused-but-set-variable] rvec box_size; ^~~~~~~~ ../../../src/tools/calcpot.c: In function 'init_calcpot': ../../../src/tools/calcpot.c:238:12: warning: variable 'box_size' set but not used [-Wunused-but-set-variable] rvec box_size; ^~~~~~~~ In file included from ../../../src/tools/calcpot.c:46: At top level: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../src/tools/calcpot.c:40: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/calcpot.c:40: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o trjcat.o ../../../src/tools/trjcat.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o trjconv.o ../../../src/tools/trjconv.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o trjorder.o ../../../src/tools/trjorder.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o wheel.o ../../../src/tools/wheel.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xpm2ps.o ../../../src/tools/xpm2ps.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o genion.o ../../../src/tools/genion.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_analyze.o ../../../src/tools/g_analyze.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_anaeig.o ../../../src/tools/g_anaeig.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_angle.o ../../../src/tools/g_angle.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_bond.o ../../../src/tools/g_bond.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_bundle.o ../../../src/tools/g_bundle.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_chi.o ../../../src/tools/g_chi.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_vanhove.lo ../../../src/tools/gmx_vanhove.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_vanhove.c -fPIC -DPIC -o .libs/gmx_vanhove.o In file included from ../../../src/tools/gmx_vanhove.c:56: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../src/tools/gmx_vanhove.c:51: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_vanhove.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_vanhove.c:47: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_cluster.o ../../../src/tools/g_cluster.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_confrms.o ../../../src/tools/g_confrms.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_covar.o ../../../src/tools/g_covar.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_density.o ../../../src/tools/g_density.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_current.o ../../../src/tools/g_current.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o mk_angndx.o ../../../src/tools/mk_angndx.c In file included from ../../../include/statutil.h:51, from ../../../src/tools/mk_angndx.c:43: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/mk_angndx.c:42: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_densmap.o ../../../src/tools/g_densmap.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_dih.o ../../../src/tools/g_dih.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o addconf.lo ../../../src/tools/addconf.c x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/addconf.c -fPIC -DPIC -o .libs/addconf.o ../../../src/tools/addconf.c: In function 'do_nsgrid': ../../../src/tools/addconf.c:205:14: warning: variable 'box_size' set but not used [-Wunused-but-set-variable] rvec box_size; ^~~~~~~~ ../../../src/tools/addconf.c: In function 'add_conf': ../../../src/tools/addconf.c:328:23: warning: unused variable 'xpp' [-Wunused-variable] rvec dx,xi,xj,xpp,*x_all,*v_all; ^~~ ../../../src/tools/addconf.c:326:34: warning: unused variable 'dz1' [-Wunused-variable] int dx0,dx1,dy0,dy1,dz0,dz1; ^~~ ../../../src/tools/addconf.c:326:30: warning: unused variable 'dz0' [-Wunused-variable] int dx0,dx1,dy0,dy1,dz0,dz1; ^~~ ../../../src/tools/addconf.c:326:26: warning: unused variable 'dy1' [-Wunused-variable] int dx0,dx1,dy0,dy1,dz0,dz1; ^~~ ../../../src/tools/addconf.c:326:22: warning: unused variable 'dy0' [-Wunused-variable] int dx0,dx1,dy0,dy1,dz0,dz1; ^~~ ../../../src/tools/addconf.c:326:18: warning: unused variable 'dx1' [-Wunused-variable] int dx0,dx1,dy0,dy1,dz0,dz1; ^~~ ../../../src/tools/addconf.c:326:14: warning: unused variable 'dx0' [-Wunused-variable] int dx0,dx1,dy0,dy1,dz0,dz1; ^~~ ../../../src/tools/addconf.c:325:44: warning: unused variable 'maxincell' [-Wunused-variable] int prev,resnr,nresadd,d,k,ncells,maxincell; ^~~~~~~~~ ../../../src/tools/addconf.c:325:37: warning: unused variable 'ncells' [-Wunused-variable] int prev,resnr,nresadd,d,k,ncells,maxincell; ^~~~~~ ../../../src/tools/addconf.c:325:35: warning: unused variable 'k' [-Wunused-variable] int prev,resnr,nresadd,d,k,ncells,maxincell; ^ ../../../src/tools/addconf.c:325:33: warning: unused variable 'd' [-Wunused-variable] int prev,resnr,nresadd,d,k,ncells,maxincell; ^ ../../../src/tools/addconf.c:325:19: warning: unused variable 'resnr' [-Wunused-variable] int prev,resnr,nresadd,d,k,ncells,maxincell; ^~~~~ ../../../src/tools/addconf.c:324:47: warning: unused variable 'iprot' [-Wunused-variable] int i,j,jj,m,j0,j1,jjj,jnres,jnr,inr,iprot,is1,is2; ^~~~~ ../../../src/tools/addconf.c:324:21: warning: unused variable 'm' [-Wunused-variable] int i,j,jj,m,j0,j1,jjj,jnres,jnr,inr,iprot,is1,is2; ^ ../../../src/tools/addconf.c:324:18: warning: unused variable 'jj' [-Wunused-variable] int i,j,jj,m,j0,j1,jjj,jnres,jnr,inr,iprot,is1,is2; ^~ ../../../src/tools/addconf.c:322:47: warning: unused variable 'ib2' [-Wunused-variable] real max_vdw,*r_prot,*r_all,n2,r2,ib1,ib2; ^~~ ../../../src/tools/addconf.c:322:43: warning: unused variable 'ib1' [-Wunused-variable] real max_vdw,*r_prot,*r_all,n2,r2,ib1,ib2; ^~~ At top level: ../../../src/tools/addconf.c:70:13: warning: 'set_margin' defined but not used [-Wunused-function] static void set_margin(t_atoms *atoms, rvec *x, real *r) ^~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/tools/addconf.c:47: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/addconf.c:46: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../src/tools/addconf.c:42: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/addconf.c:42: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_dielectric.o ../../../src/tools/g_dielectric.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_helixorient.o ../../../src/tools/g_helixorient.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_principal.o ../../../src/tools/g_principal.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_dipoles.o ../../../src/tools/g_dipoles.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_disre.o ../../../src/tools/g_disre.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_dist.o ../../../src/tools/g_dist.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_dyndom.o ../../../src/tools/g_dyndom.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_enemat.o ../../../src/tools/g_enemat.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_energy.o ../../../src/tools/g_energy.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_filter.o ../../../src/tools/g_filter.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_lie.o ../../../src/tools/g_lie.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_gyrate.o ../../../src/tools/g_gyrate.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_h2order.o ../../../src/tools/g_h2order.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_hbond.o ../../../src/tools/g_hbond.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_helix.o ../../../src/tools/g_helix.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_mindist.o ../../../src/tools/g_mindist.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o anadock.o ../../../src/tools/anadock.c ../../../src/tools/anadock.c: In function 'rmsd_dist': ../../../src/tools/anadock.c:197:13: warning: variable 'dist' set but not used [-Wunused-but-set-variable] real rmsd,dist; ^~~~ In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/tools/anadock.c:47: At top level: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/anadock.c:46: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/anadock.c:46: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/tools/anadock.c:41: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ ../../../src/tools/anadock.c: In function 'main': ../../../src/tools/anadock.c:110:22: warning: '%d' directive writing between 1 and 10 bytes into a region of size between 0 and 255 [-Wformat-overflow=] sprintf(name,"%s_%d.pdb",buf,i+1); ^~ ../../../src/tools/anadock.c:110:18: note: directive argument in the range [1, 2147483647] sprintf(name,"%s_%d.pdb",buf,i+1); ^~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../include/typedefs.h:52, from ../../../include/confio.h:44, from ../../../src/tools/anadock.c:40: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 7 and 271 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_msd.o ../../../src/tools/g_msd.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_nmens.o ../../../src/tools/g_nmens.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_morph.o ../../../src/tools/g_morph.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_nmeig.o ../../../src/tools/g_nmeig.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_polystat.o ../../../src/tools/g_polystat.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_order.o ../../../src/tools/g_order.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_rama.o ../../../src/tools/g_rama.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_potential.o ../../../src/tools/g_potential.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_rdf.o ../../../src/tools/g_rdf.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_rms.o ../../../src/tools/g_rms.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_rmsdist.o ../../../src/tools/g_rmsdist.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_rmsf.o ../../../src/tools/g_rmsf.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_rotacf.o ../../../src/tools/g_rotacf.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_saltbr.o ../../../src/tools/g_saltbr.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_sas.o ../../../src/tools/g_sas.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_sham.o ../../../src/tools/g_sham.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_sgangle.o ../../../src/tools/g_sgangle.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_spol.o ../../../src/tools/g_spol.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_sorient.o ../../../src/tools/g_sorient.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_sdf.o ../../../src/tools/g_sdf.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_spatial.o ../../../src/tools/g_spatial.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_tcaf.o ../../../src/tools/g_tcaf.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_vanhove.o ../../../src/tools/g_vanhove.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_traj.o ../../../src/tools/g_traj.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_clustsize.o ../../../src/tools/g_clustsize.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_velacc.o ../../../src/tools/g_velacc.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_mdmat.o ../../../src/tools/g_mdmat.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_wham.o ../../../src/tools/g_wham.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_kinetics.o ../../../src/tools/g_kinetics.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o make_edi.o ../../../src/tools/make_edi.c ../../../src/tools/make_edi.c: In function 'sscan_list': ../../../src/tools/make_edi.c:185:14: warning: this 'else' clause does not guard... [-Wmisleading-indentation] else status=sError; break; ^~~~ ../../../src/tools/make_edi.c:185:34: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' else status=sError; break; ^~~~~ ../../../src/tools/make_edi.c: In function 'main': ../../../src/tools/make_edi.c:640:10: warning: variable 'bTop' set but not used [-Wunused-but-set-variable] bool bTop, bFit1; ^~~~ In file included from ../../../src/tools/make_edi.c:56: At top level: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/tools/make_edi.c:52: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/make_edi.c:50: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/make_edi.c:50: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/tools/make_edi.c:43: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sigeps.o ../../../src/tools/sigeps.c ../../../src/tools/sigeps.c: In function 'main': ../../../src/tools/sigeps.c:106:42: warning: unused variable 'pp' [-Wunused-variable] real qq,x,oldx,minimum,mval,dp[2],pp[2]; ^~ In file included from ../../../src/tools/sigeps.c:50: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/sigeps.c:50: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/tools/sigeps.c:47: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/tools/sigeps.c:44: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/sigeps.c:43: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o make_ndx.o ../../../src/tools/make_ndx.c In file included from ../../../src/tools/make_ndx.c:52: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/make_ndx.c:52: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/tools/make_ndx.c:48: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/make_ndx.c:46: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ ../../../src/tools/make_ndx.c: In function 'main': ../../../src/tools/make_ndx.c:994:20: warning: '_&_' directive writing 3 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(gname,"%s_&_%s",gname1,gname2); ^~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../src/tools/make_ndx.c:41: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 4 and 8194 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../src/tools/make_ndx.c:990:21: warning: '%s' directive writing up to 4095 bytes into a region of size between 0 and 4095 [-Wformat-overflow=] sprintf(gname,"%s_%s",gname1,gname2); ^~ ~~~~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../src/tools/make_ndx.c:41: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 2 and 8192 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -version-info 5:0:0 -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o libgmxana_d.la -rpath /usr/lib64 autocorr.lo expfit.lo polynomials.lo levenmar.lo anadih.lo pp2shift.lo dlist.lo eigio.lo lsq.lo cmat.lo eigensolver.lo nsc.lo hxprops.lo fitahx.lo gmx_analyze.lo gmx_anaeig.lo gmx_angle.lo gmx_bond.lo gmx_bundle.lo gmx_chi.lo gmx_cluster.lo gmx_confrms.lo gmx_covar.lo gmx_current.lo gmx_density.lo gmx_densmap.lo gmx_dih.lo gmx_dielectric.lo gmx_kinetics.lo gmx_spatial.lo gmx_dipoles.lo gmx_disre.lo gmx_dist.lo gmx_dyndom.lo gmx_enemat.lo gmx_energy.lo gmx_lie.lo gmx_filter.lo gmx_gyrate.lo gmx_h2order.lo gmx_hbond.lo gmx_helix.lo gmx_mindist.lo gmx_msd.lo gmx_morph.lo gmx_nmeig.lo gmx_nmens.lo gmx_order.lo gmx_principal.lo gmx_polystat.lo gmx_potential.lo gmx_rama.lo gmx_rdf.lo gmx_rms.lo gmx_rmsdist.lo gmx_rmsf.lo gmx_rotacf.lo gmx_saltbr.lo gmx_sas.lo gmx_sdf.lo gmx_sgangle.lo gmx_sorient.lo gmx_spol.lo gmx_tcaf.lo gmx_traj.lo gmx_velacc.lo gmx_helixorient.lo gmx_clustsize.lo gmx_mdmat.lo gmx_wham.lo correl.lo gmx_sham.lo gmx_nmtraj.lo gmx_trjconv.lo gmx_trjcat.lo gmx_trjorder.lo gmx_xpm2ps.lo gmx_editconf.lo gmx_genbox.lo gmx_genion.lo gmx_genconf.lo gmx_genpr.lo gmx_eneconv.lo gmx_vanhove.lo gmx_wheel.lo addconf.lo calcpot.lo edittop.lo ../gmxlib/libgmx_d.la ../mdlib/libmd_d.la -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte x86_64-alt-linux-gcc -shared .libs/autocorr.o .libs/expfit.o .libs/polynomials.o .libs/levenmar.o .libs/anadih.o .libs/pp2shift.o .libs/dlist.o .libs/eigio.o .libs/lsq.o .libs/cmat.o .libs/eigensolver.o .libs/nsc.o .libs/hxprops.o .libs/fitahx.o .libs/gmx_analyze.o .libs/gmx_anaeig.o .libs/gmx_angle.o .libs/gmx_bond.o .libs/gmx_bundle.o .libs/gmx_chi.o .libs/gmx_cluster.o .libs/gmx_confrms.o .libs/gmx_covar.o .libs/gmx_current.o .libs/gmx_density.o .libs/gmx_densmap.o .libs/gmx_dih.o .libs/gmx_dielectric.o .libs/gmx_kinetics.o .libs/gmx_spatial.o .libs/gmx_dipoles.o .libs/gmx_disre.o .libs/gmx_dist.o .libs/gmx_dyndom.o .libs/gmx_enemat.o .libs/gmx_energy.o .libs/gmx_lie.o .libs/gmx_filter.o .libs/gmx_gyrate.o .libs/gmx_h2order.o .libs/gmx_hbond.o .libs/gmx_helix.o .libs/gmx_mindist.o .libs/gmx_msd.o .libs/gmx_morph.o .libs/gmx_nmeig.o .libs/gmx_nmens.o .libs/gmx_order.o .libs/gmx_principal.o .libs/gmx_polystat.o .libs/gmx_potential.o .libs/gmx_rama.o .libs/gmx_rdf.o .libs/gmx_rms.o .libs/gmx_rmsdist.o .libs/gmx_rmsf.o .libs/gmx_rotacf.o .libs/gmx_saltbr.o .libs/gmx_sas.o .libs/gmx_sdf.o .libs/gmx_sgangle.o .libs/gmx_sorient.o .libs/gmx_spol.o .libs/gmx_tcaf.o .libs/gmx_traj.o .libs/gmx_velacc.o .libs/gmx_helixorient.o .libs/gmx_clustsize.o .libs/gmx_mdmat.o .libs/gmx_wham.o .libs/correl.o .libs/gmx_sham.o .libs/gmx_nmtraj.o .libs/gmx_trjconv.o .libs/gmx_trjcat.o .libs/gmx_trjorder.o .libs/gmx_xpm2ps.o .libs/gmx_editconf.o .libs/gmx_genbox.o .libs/gmx_genion.o .libs/gmx_genconf.o .libs/gmx_genpr.o .libs/gmx_eneconv.o .libs/gmx_vanhove.o .libs/gmx_wheel.o .libs/addconf.o .libs/calcpot.o .libs/edittop.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/lib64/openmpi/lib ../gmxlib/.libs/libgmx_d.so ../mdlib/.libs/libmd_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wl,-Rpath:/usr/lib64/openmpi/lib -Wl,-soname -Wl,libgmxana_d.so.5 -o .libs/libgmxana_d.so.5.0.0 (cd .libs && rm -f libgmxana_d.so.5 && ln -s libgmxana_d.so.5.0.0 libgmxana_d.so.5) (cd .libs && rm -f libgmxana_d.so && ln -s libgmxana_d.so.5.0.0 libgmxana_d.so) creating libgmxana_d.la (cd .libs && rm -f libgmxana_d.la && ln -s ../libgmxana_d.la libgmxana_d.la) make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o eneconv eneconv.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_eneconv.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/eneconv eneconv.o .libs/gmx_eneconv.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating eneconv make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o do_dssp do_dssp.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/do_dssp do_dssp.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating do_dssp make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o genconf genconf.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_genconf.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/genconf genconf.o .libs/gmx_genconf.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating genconf make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_nmtraj g_nmtraj.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/eigio.o .libs/gmx_nmtraj.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_nmtraj g_nmtraj.o .libs/eigio.o .libs/gmx_nmtraj.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_nmtraj make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o make_ndx make_ndx.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/make_ndx make_ndx.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating make_ndx make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o editconf editconf.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_editconf.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/editconf editconf.o .libs/gmx_editconf.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating editconf make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o genrestr genrestr.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_genpr.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/genrestr genrestr.o .libs/gmx_genpr.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating genrestr make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o genbox genbox.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/addconf.o .libs/gmx_genbox.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/genbox genbox.o .libs/addconf.o .libs/gmx_genbox.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating genbox make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o mk_angndx mk_angndx.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/mk_angndx mk_angndx.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating mk_angndx make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o trjcat trjcat.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_trjcat.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/trjcat trjcat.o .libs/gmx_trjcat.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating trjcat make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o trjorder trjorder.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_trjorder.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/trjorder trjorder.o .libs/gmx_trjorder.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating trjorder make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o trjconv trjconv.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_trjconv.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/trjconv trjconv.o .libs/gmx_trjconv.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating trjconv make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o wheel wheel.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_wheel.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/wheel wheel.o .libs/gmx_wheel.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating wheel make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o xpm2ps xpm2ps.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_xpm2ps.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/xpm2ps xpm2ps.o .libs/gmx_xpm2ps.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating xpm2ps make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o genion genion.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/calcpot.o .libs/gmx_genion.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/genion genion.o .libs/calcpot.o .libs/gmx_genion.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating genion make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o anadock anadock.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/lsq.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/anadock anadock.o .libs/lsq.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating anadock make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o make_edi make_edi.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/eigio.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/make_edi make_edi.o .libs/eigio.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating make_edi make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_bond g_bond.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/lsq.o .libs/gmx_bond.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_bond g_bond.o .libs/lsq.o .libs/gmx_bond.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_bond make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_anaeig g_anaeig.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/eigio.o .libs/gmx_anaeig.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_anaeig g_anaeig.o .libs/eigio.o .libs/gmx_anaeig.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_anaeig make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_angle g_angle.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/dlist.o .libs/anadih.o .libs/gmx_angle.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_angle g_angle.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/dlist.o .libs/anadih.o .libs/gmx_angle.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_angle make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_chi g_chi.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/pp2shift.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/dlist.o .libs/anadih.o .libs/gmx_chi.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_chi g_chi.o .libs/pp2shift.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/dlist.o .libs/anadih.o .libs/gmx_chi.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_chi make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_analyze g_analyze.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_hbond.o .libs/gmx_analyze.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_analyze g_analyze.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_hbond.o .libs/gmx_analyze.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_analyze make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_bundle g_bundle.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_bundle.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_bundle g_bundle.o .libs/gmx_bundle.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_bundle make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_cluster g_cluster.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/eigensolver.o .libs/cmat.o .libs/gmx_cluster.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_cluster g_cluster.o .libs/eigensolver.o .libs/cmat.o .libs/gmx_cluster.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_cluster make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_confrms g_confrms.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_confrms.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_confrms g_confrms.o .libs/gmx_confrms.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_confrms make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_covar g_covar.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/eigensolver.o .libs/eigio.o .libs/gmx_covar.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_covar g_covar.o .libs/eigensolver.o .libs/eigio.o .libs/gmx_covar.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_covar make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_density g_density.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_density.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_density g_density.o .libs/gmx_density.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_density make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_densmap g_densmap.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_densmap.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_densmap g_densmap.o .libs/gmx_densmap.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_densmap make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_dih g_dih.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_dih.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_dih g_dih.o .libs/gmx_dih.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_dih make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_current g_current.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_current.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_current g_current.o .libs/gmx_current.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_current make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_dielectric g_dielectric.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_dielectric.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_dielectric g_dielectric.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_dielectric.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_dielectric make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_helixorient g_helixorient.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_helixorient.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_helixorient g_helixorient.o .libs/gmx_helixorient.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_helixorient make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_principal g_principal.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_principal.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_principal g_principal.o .libs/gmx_principal.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_principal make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_dipoles g_dipoles.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/lsq.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_dipoles.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_dipoles g_dipoles.o .libs/lsq.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_dipoles.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_dipoles make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_dist g_dist.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_dist.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_dist g_dist.o .libs/gmx_dist.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_dist make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_disre g_disre.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_disre.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_disre g_disre.o .libs/gmx_disre.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_disre make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_enemat g_enemat.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_enemat.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_enemat g_enemat.o .libs/gmx_enemat.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_enemat make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_dyndom g_dyndom.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_dyndom.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_dyndom g_dyndom.o .libs/gmx_dyndom.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_dyndom make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_energy g_energy.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_energy.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_energy g_energy.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_energy.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_energy make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_lie g_lie.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_lie.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_lie g_lie.o .libs/gmx_lie.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_lie make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_filter g_filter.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_filter.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_filter g_filter.o .libs/gmx_filter.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_filter make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_gyrate g_gyrate.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_gyrate.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_gyrate g_gyrate.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_gyrate.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_gyrate make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_h2order g_h2order.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_h2order.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_h2order g_h2order.o .libs/gmx_h2order.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_h2order make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_mindist g_mindist.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_mindist.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_mindist g_mindist.o .libs/gmx_mindist.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_mindist make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_helix g_helix.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/hxprops.o .libs/fitahx.o .libs/gmx_helix.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_helix g_helix.o .libs/hxprops.o .libs/fitahx.o .libs/gmx_helix.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_helix make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_msd g_msd.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/lsq.o .libs/gmx_msd.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_msd g_msd.o .libs/lsq.o .libs/gmx_msd.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_msd make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_hbond g_hbond.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_hbond.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_hbond g_hbond.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_hbond.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_hbond make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_morph g_morph.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_morph.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_morph g_morph.o .libs/gmx_morph.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_morph make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_nmeig g_nmeig.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/eigensolver.o .libs/eigio.o .libs/gmx_nmeig.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_nmeig g_nmeig.o .libs/eigensolver.o .libs/eigio.o .libs/gmx_nmeig.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_nmeig make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_order g_order.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_order.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_order g_order.o .libs/gmx_order.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_order make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_nmens g_nmens.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/eigensolver.o .libs/eigio.o .libs/gmx_nmens.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_nmens g_nmens.o .libs/eigensolver.o .libs/eigio.o .libs/gmx_nmens.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_nmens make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_polystat g_polystat.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_polystat.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_polystat g_polystat.o .libs/gmx_polystat.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_polystat make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_potential g_potential.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_potential.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_potential g_potential.o .libs/gmx_potential.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_potential make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_rama g_rama.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_rama.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_rama g_rama.o .libs/gmx_rama.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_rama make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_rdf g_rdf.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_rdf.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_rdf g_rdf.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_rdf.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_rdf make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_rms g_rms.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/cmat.o .libs/gmx_rms.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_rms g_rms.o .libs/cmat.o .libs/gmx_rms.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_rms make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_rmsdist g_rmsdist.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_rmsdist.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_rmsdist g_rmsdist.o .libs/gmx_rmsdist.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_rmsdist make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_rmsf g_rmsf.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/eigensolver.o .libs/gmx_rmsf.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_rmsf g_rmsf.o .libs/eigensolver.o .libs/gmx_rmsf.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_rmsf make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_saltbr g_saltbr.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_saltbr.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_saltbr g_saltbr.o .libs/gmx_saltbr.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_saltbr make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_rotacf g_rotacf.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_rotacf.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_rotacf g_rotacf.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_rotacf.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_rotacf make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_sas g_sas.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/nsc.o .libs/gmx_sas.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_sas g_sas.o .libs/nsc.o .libs/gmx_sas.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_sas make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_sgangle g_sgangle.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_sgangle.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_sgangle g_sgangle.o .libs/gmx_sgangle.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_sgangle make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_sham g_sham.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_sham.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_sham g_sham.o .libs/gmx_sham.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_sham make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_sorient g_sorient.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_sorient.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_sorient g_sorient.o .libs/gmx_sorient.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_sorient make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_spol g_spol.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_spol.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_spol g_spol.o .libs/gmx_spol.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_spol make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_sdf g_sdf.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_sdf.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_sdf g_sdf.o .libs/gmx_sdf.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_sdf make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_spatial g_spatial.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_spatial.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_spatial g_spatial.o .libs/gmx_spatial.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_spatial make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_vanhove g_vanhove.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_vanhove.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_vanhove g_vanhove.o .libs/gmx_vanhove.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_vanhove make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_tcaf g_tcaf.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_tcaf.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_tcaf g_tcaf.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_tcaf.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_tcaf make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_traj g_traj.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_traj.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_traj g_traj.o .libs/gmx_traj.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_traj make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_velacc g_velacc.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_velacc.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_velacc g_velacc.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_velacc.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_velacc make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_clustsize g_clustsize.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_clustsize.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_clustsize g_clustsize.o .libs/gmx_clustsize.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_clustsize make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_mdmat g_mdmat.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_mdmat.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_mdmat g_mdmat.o .libs/gmx_mdmat.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_mdmat make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_wham g_wham.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_wham.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_wham g_wham.o .libs/gmx_wham.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_wham make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o sigeps sigeps.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/sigeps sigeps.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating sigeps make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_kinetics g_kinetics.o libgmxana_d.la ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la .libs/gmx_kinetics.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_kinetics g_kinetics.o .libs/gmx_kinetics.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_d.so ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_kinetics make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' Making all in ngmx make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xmb.o ../../../src/ngmx/xmb.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ngmx.o ../../../src/ngmx/ngmx.c ../../../src/ngmx/ngmx.c: In function 'dump_xw': ../../../src/ngmx/ngmx.c:68:8: warning: variable 'rc' set but not used [-Wunused-but-set-variable] int rc; ^~ ../../../src/ngmx/ngmx.c: In function 'init_gmx': ../../../src/ngmx/ngmx.c:354:35: warning: unused variable 'nre' [-Wunused-variable] int step,natom,nre,natom_trx; ^~~ At top level: ../../../src/ngmx/ngmx.c:65:13: warning: 'dump_xw' defined but not used [-Wunused-function] static void dump_xw(char *dispname,Window w,char *fn) ^~~~~~~ In file included from ../../../src/ngmx/ngmx.c:52: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/ngmx/ngmx.c:49: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xutil.o ../../../src/ngmx/xutil.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o popup.o ../../../src/ngmx/popup.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o x11.o ../../../src/ngmx/x11.c ../../../src/ngmx/x11.c:265:13: warning: 'Xrm' defined but not used [-Wunused-function] static void Xrm(int *argc, char *argv[]) ^~~ ../../../src/ngmx/x11.c:132:13: warning: 'TestEvent' defined but not used [-Wunused-function] static Bool TestEvent(Display *disp,XEvent *event,char *arg) ^~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o fgrid.o ../../../src/ngmx/fgrid.c ../../../src/ngmx/fgrid.c: In function 'GetBuf': ../../../src/ngmx/fgrid.c:101:7: warning: variable 'rc' set but not used [-Wunused-but-set-variable] int rc; ^~ ../../../src/ngmx/fgrid.c: In function 'FGridFromFile': ../../../src/ngmx/fgrid.c:346:8: warning: unused variable 'newinfile' [-Wunused-variable] char newinfile[STRLEN]; ^~~~~~~~~ ../../../src/ngmx/fgrid.c:345:9: warning: unused variable 'gmxlib' [-Wunused-variable] char *gmxlib; ^~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xdlghi.o ../../../src/ngmx/xdlghi.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pulldown.o ../../../src/ngmx/pulldown.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xdlgitem.o ../../../src/ngmx/xdlgitem.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o buttons.o ../../../src/ngmx/buttons.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nleg.o ../../../src/ngmx/nleg.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o logo.o ../../../src/ngmx/logo.c In file included from ../../../src/ngmx/logo.c:45: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dialogs.o ../../../src/ngmx/dialogs.c ../../../src/ngmx/dialogs.c:373:13: warning: 'in_set' defined but not used [-Wunused-function] static bool in_set(int i,int n,int set[]) ^~~~~~ ../../../src/ngmx/dialogs.c:240:13: warning: 'Extract' defined but not used [-Wunused-function] static void Extract(t_dlg *dlg,int ID,char *buf) ^~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o filter.o ../../../src/ngmx/filter.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o manager.o ../../../src/ngmx/manager.c ../../../src/ngmx/manager.c: In function 'set_file': ../../../src/ngmx/manager.c:182:18: warning: unused variable 'idum' [-Wunused-variable] int i,idum; ^~~~ ../../../src/ngmx/manager.c: In function 'step_man': ../../../src/ngmx/manager.c:312:15: warning: unused variable 'dum' [-Wunused-variable] int dum; ^~~ ../../../src/ngmx/manager.c:311:15: warning: unused variable 'rdum' [-Wunused-variable] real rdum; ^~~~ In file included from ../../../src/ngmx/manager.c:57: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/ngmx/manager.c:56: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/ngmx/manager.c:55: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/ngmx/manager.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ ../../../src/ngmx/manager.c: In function 'set_file': ../../../src/ngmx/manager.c:213:20: warning: '%s' directive writing up to 255 bytes into a region of size 254 [-Wformat-overflow=] sprintf(buf,"%s: %s",*man->top.name,quote); ^~ ~~~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../src/ngmx/manager.c:40: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 3 or more bytes (assuming 258) into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xdlg.o ../../../src/ngmx/xdlg.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o molps.o ../../../src/ngmx/molps.c ../../../src/ngmx/molps.c: In function 'ps_draw_mol': ../../../src/ngmx/molps.c:204:15: warning: unused variable 'ntime' [-Wunused-variable] static int ntime=0; ^~~~~ ../../../src/ngmx/molps.c:203:15: warning: unused variable 'tstr' [-Wunused-variable] static char tstr[2][20]; ^~~~ At top level: ../../../src/ngmx/molps.c:203:15: warning: 'tstr' defined but not used [-Wunused-variable] ../../../src/ngmx/molps.c:204:15: warning: 'ntime' defined but not used [-Wunused-variable] static int ntime=0; ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nmol.o ../../../src/ngmx/nmol.c ../../../src/ngmx/nmol.c: In function 'draw_box': ../../../src/ngmx/nmol.c:422:23: warning: unused variable 'tv2' [-Wunused-variable] iv2 vec2[NCUCEDGE],tv2; ^~~ In file included from ../../../src/ngmx/nmol.c:51: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/ngmx/nmol.c:51: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xrama.o ../../../src/ngmx/xrama.c ../../../src/ngmx/xrama.c: In function 'main': ../../../src/ngmx/xrama.c:319:15: warning: variable 'ramatop' set but not used [-Wunused-but-set-variable] t_topology *ramatop; ^~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/ngmx/xrama.c:50: At top level: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/ngmx/xrama.c:44: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o highway.o ../../../src/ngmx/highway.c In file included from ../../../include/statutil.h:51, from ../../../src/ngmx/highway.c:47: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/ngmx/highway.c:46: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o ngmx ngmx.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath mkdir .libs DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/ngmx ngmx.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o -lgslcblas ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath creating ngmx make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o xrama xrama.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/xrama xrama.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o -lgslcblas ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath creating xrama make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx' /bin/sh ../../libtool --tag=CC --mode=link x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o highway highway.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o ../mdlib/libmd_d.la ../gmxlib/libgmx_d.la -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/highway highway.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o -lgslcblas ../mdlib/.libs/libmd_d.so ../gmxlib/.libs/libgmx_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath creating highway make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx' Making all in contrib make[3]: Nothing to be done for 'all'. Making all in admin make[1]: Nothing to be done for 'all'. Making all in scripts make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/scripts' cat ../../scripts/GMXRC.in | sed 's,@bindir\@,/usr/bin,' > GMXRC make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/scripts' make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/scripts' cat ../../scripts/GMXRC.bash.in | sed 's,@libdir\@,/usr/lib64,' | \ sed 's,@bindir\@,/usr/bin,' | \ sed 's,@datadir\@,/usr/share,' | \ sed 's,@mandir\@,/usr/share/man,' > GMXRC.bash make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/scripts' make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/scripts' cat ../../scripts/GMXRC.csh.in | sed 's,@libdir\@,/usr/lib64,' | \ sed 's,@bindir\@,/usr/bin,' | \ sed 's,@datadir\@,/usr/share,' | \ sed 's,@mandir\@,/usr/share/man,' > GMXRC.csh make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/scripts' make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/scripts' cat ../../scripts/GMXRC.zsh.in | sed 's,@libdir\@,/usr/lib64,' | \ sed 's,@bindir\@,/usr/bin,' | \ sed 's,@datadir\@,/usr/share,' | \ sed 's,@mandir\@,/usr/share/man,' > GMXRC.zsh make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/scripts' Making all in share Making all in top make[2]: Nothing to be done for 'all'. Making all in tutor Making all in nmr1 make[3]: Nothing to be done for 'all'. Making all in nmr2 make[3]: Nothing to be done for 'all'. Making all in speptide make[3]: Nothing to be done for 'all'. Making all in water make[3]: Nothing to be done for 'all'. Making all in gmxdemo make[3]: Nothing to be done for 'all'. Making all in methanol make[3]: Nothing to be done for 'all'. Making all in mixed make[3]: Nothing to be done for 'all'. make[3]: Nothing to be done for 'all-am'. Making all in template make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/template' cat ../../../share/template/Template.mak | \ sed 's,@LDFLAGS\@,-L/usr/lib64 -lgslcblas ,' | \ sed 's,@LIBS\@,-lmd_d -lgmx_d -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath ,' | \ sed 's,@CFLAGS\@,-g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -I/usr/include -I/usr/include/gromacs -DGMX_DOUBLE,' | \ sed 's,@CC\@,x86_64-alt-linux-gcc,' | \ sed 's,@host\@,x86_64-alt-linux-gnu,' >Makefile.x86_64-alt-linux-gnu_double sed: -e expression #1, char 36: unknown option to `s' make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/template' Making all in html Making all in . make[3]: Nothing to be done for 'all-am'. Making all in images make[3]: Nothing to be done for 'all'. Making all in online make[3]: Nothing to be done for 'all'. make[2]: Nothing to be done for 'all-am'. Making all in man Making all in man1 make[2]: Nothing to be done for 'all'. make[2]: Nothing to be done for 'all-am'. make[1]: Nothing to be done for 'all-am'. + popd ~/RPM/BUILD/gromacs-4.0.7 + mkdir mpi-single + pushd mpi-single ~/RPM/BUILD/gromacs-4.0.7/mpi-single ~/RPM/BUILD/gromacs-4.0.7 + buildThis float enable _mpi + ln -s ../configure . + CFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2' + export CFLAGS + CXXFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2' + export CXXFLAGS + FFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2' + export FFLAGS + FCFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2' + export FCFLAGS + '[' -n '' ']' ++ printf %s '-pipe -frecord-gcc-switches -Wall -g -O2' ++ sed -r 's/(^|[[:space:]]+)-[^m][^[:space:]]*//g' + ASFLAGS= + export ASFLAGS + export lt_cv_prog_cc_static_works=no + lt_cv_prog_cc_static_works=no + export lt_cv_deplibs_check_method=pass_all + lt_cv_deplibs_check_method=pass_all + readlink -e -- ./configure + xargs -ri dirname -- '{}' + sort -u + xargs -rn1 install -pm755 -- /usr/share/gnu-config/config.sub /usr/share/gnu-config/config.guess + xargs -ri find '{}' -type f '(' -name config.sub -or -name config.guess ')' -printf '%h/\n' + ./configure --build=x86_64-alt-linux --host=x86_64-alt-linux --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/lib --localstatedir=/var/lib --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --disable-dependency-tracking --disable-silent-rules --without-included-gettext --disable-rpath --enable-static=no --enable-shared --enable-float --enable-mpi --enable-prefetch-forces --enable-fortran --with-gnu-ld --with-fft=fftw3 --with-x --with-gsl --enable-mpi --program-suffix=_mpi --with-external-blas=-lopenblas configure: WARNING: unrecognized options: --without-included-gettext, --disable-rpath, --enable-prefetch-forces checking build system type... x86_64-alt-linux-gnu checking host system type... x86_64-alt-linux-gnu checking for a BSD-compatible install... /bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether UID '619' is supported by ustar format... yes checking whether GID '619' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar checking for x86_64-alt-linux-cc... no checking for x86_64-alt-linux-icc... no checking for x86_64-alt-linux-xlc... no checking for x86_64-alt-linux-gcc... x86_64-alt-linux-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether x86_64-alt-linux-gcc accepts -g... yes checking for x86_64-alt-linux-gcc option to accept ISO C89... none needed checking whether x86_64-alt-linux-gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of x86_64-alt-linux-gcc... none checking for x86_64-alt-linux-f77... no checking for x86_64-alt-linux-ifort... no checking for x86_64-alt-linux-xlf... no checking for x86_64-alt-linux-xlf77... no checking for x86_64-alt-linux-cf77... no checking for x86_64-alt-linux-fl32... no checking for x86_64-alt-linux-g77... no checking for x86_64-alt-linux-fort77... no checking for x86_64-alt-linux-f90... no checking for x86_64-alt-linux-xlf90... no checking for x86_64-alt-linux-pgf77... no checking for x86_64-alt-linux-cf77... no checking for x86_64-alt-linux-fort... no checking for x86_64-alt-linux-fort77... no checking for x86_64-alt-linux-pgf90... no checking for f77... f77 checking whether we are using the GNU Fortran 77 compiler... yes checking whether f77 accepts -g... yes checking dependency style of x86_64-alt-linux-gcc... none checking for mpxlc... no checking for mpicc... mpicc checking whether the MPI cc command works... yes checking for catamount... no checking how to get verbose linking output from f77... -v checking for Fortran 77 libraries of f77... -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath checking for dummy main to link with Fortran 77 libraries... none checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore checking how to run the C preprocessor... mpicc -E checking whether mpicc accepts -O3... yes checking whether mpicc accepts -funroll-all-loops... yes ****************************************** * Using CFLAGS from environment variable * ****************************************** ****************************************** * Using FFLAGS from environment variable * ****************************************** checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking whether byte ordering is bigendian... no checking size of int... 4 checking size of long int... 8 checking size of long long int... 8 checking size of off_t... 8 checking that size_t can hold pointers... yes checking floating-point format... IEEE754 (little-endian byte and word order) checking whether ln -s works... yes checking whether make sets $(MAKE)... (cached) yes checking for a sed that does not truncate output... /bin/sed checking for ld used by mpicc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for /usr/bin/ld option to reload object files... -r checking for BSD-compatible nm... /usr/bin/nm -B checking how to recognise dependent libraries... (cached) pass_all checking dlfcn.h usability... yes checking dlfcn.h presence... yes checking for dlfcn.h... yes checking for x86_64-alt-linux-g++... x86_64-alt-linux-g++ checking whether we are using the GNU C++ compiler... yes checking whether x86_64-alt-linux-g++ accepts -g... yes checking dependency style of x86_64-alt-linux-g++... none checking how to run the C++ preprocessor... x86_64-alt-linux-g++ -E checking the maximum length of command line arguments... 32768 checking command to parse /usr/bin/nm -B output from mpicc object... ok checking for objdir... .libs checking for x86_64-alt-linux-ar... no checking for ar... ar checking for x86_64-alt-linux-ranlib... no checking for ranlib... ranlib checking for x86_64-alt-linux-strip... no checking for strip... strip checking if mpicc supports -fno-rtti -fno-exceptions... no checking for mpicc option to produce PIC... -fPIC checking if mpicc PIC flag -fPIC works... yes checking if mpicc static flag -static works... no checking if mpicc supports -c -o file.o... yes checking whether the mpicc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... cat: '/etc/ld.so.conf.d/*.conf': No such file or directory GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no configure: creating libtool appending configuration tag "CXX" to libtool checking for ld used by x86_64-alt-linux-g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the x86_64-alt-linux-g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for x86_64-alt-linux-g++ option to produce PIC... -fPIC checking if x86_64-alt-linux-g++ PIC flag -fPIC works... yes checking if x86_64-alt-linux-g++ static flag -static works... no checking if x86_64-alt-linux-g++ supports -c -o file.o... yes checking whether the x86_64-alt-linux-g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... cat: '/etc/ld.so.conf.d/*.conf': No such file or directory GNU/Linux ld.so checking how to hardcode library paths into programs... immediate appending configuration tag "F77" to libtool checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for f77 option to produce PIC... -fPIC checking if f77 PIC flag -fPIC works... yes checking if f77 static flag -static works... no checking if f77 supports -c -o file.o... yes checking whether the f77 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... cat: '/etc/ld.so.conf.d/*.conf': No such file or directory GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for _LARGEFILE_SOURCE value needed for large files... no checking for sqrt in -lm... yes checking for fftw3.h... yes checking for main in -lfftw3f... yes checking rpc/rpc.h usability... yes checking rpc/rpc.h presence... yes checking for rpc/rpc.h... yes checking for rpc/xdr.h... yes checking for xdr_float in -lnsl... no checking for working memcmp... yes checking return type of signal handlers... void checking for off_t... yes checking for vprintf... yes checking for _doprnt... no checking if malloc debugging is wanted... no checking for strcasecmp... yes checking for strdup... yes checking for bool... no checking size of int... (cached) 4 checking size of long int... (cached) 8 checking size of long long int... (cached) 8 checking size of off_t... (cached) 8 checking size of void*... 8 checking for X... libraries , headers checking for gethostbyname... yes checking for connect... yes checking for remove... yes checking for shmat... yes checking for IceConnectionNumber in -lICE... yes checking gsl/gsl_version.h usability... yes checking gsl/gsl_version.h presence... yes checking for gsl/gsl_version.h... yes checking for main in -lgslcblas... yes checking for main in -lgsl... yes checking libxml/parser.h usability... no checking libxml/parser.h presence... no checking for libxml/parser.h... no checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking for strings.h... (cached) yes checking for unistd.h... (cached) yes checking for unistd.h... (cached) yes checking for an ANSI C-conforming const... yes checking for size_t... yes checking whether struct tm is in sys/time.h or time.h... time.h checking for uid_t in sys/types.h... yes checking for inline... inline checking whether your compiler can handle assembly files (*.s)... yes checking whether as fully supports X86_64 SSE instructions... yes checking whether byte ordering is bigendian... (cached) no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating src/gmxlib/Makefile config.status: creating src/gmxlib/gmx_blas/Makefile config.status: creating src/gmxlib/gmx_lapack/Makefile config.status: creating src/gmxlib/nonbonded/Makefile config.status: creating src/gmxlib/nonbonded/nb_kernel/Makefile config.status: creating src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/Makefile config.status: creating src/gmxlib/nonbonded/nb_kernel_ia32_sse/Makefile config.status: creating src/gmxlib/nonbonded/nb_kernel_ia32_sse2/Makefile config.status: creating src/gmxlib/nonbonded/nb_kernel_x86_64_sse/Makefile config.status: creating src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/Makefile config.status: creating src/gmxlib/nonbonded/nb_kernel_ppc_altivec/Makefile config.status: creating src/gmxlib/nonbonded/nb_kernel_ia64_single/Makefile config.status: creating src/gmxlib/nonbonded/nb_kernel_ia64_double/Makefile config.status: creating src/gmxlib/nonbonded/nb_kernel_bluegene/Makefile config.status: creating include/Makefile config.status: creating include/types/Makefile config.status: creating src/mdlib/Makefile config.status: creating src/kernel/Makefile config.status: creating src/tools/Makefile config.status: creating src/ngmx/Makefile config.status: creating src/contrib/Makefile config.status: creating scripts/Makefile config.status: creating admin/Makefile config.status: creating share/Makefile config.status: creating share/tutor/Makefile config.status: creating share/tutor/gmxdemo/Makefile config.status: creating share/tutor/nmr1/Makefile config.status: creating share/tutor/nmr2/Makefile config.status: creating share/tutor/water/Makefile config.status: creating share/tutor/mixed/Makefile config.status: creating share/tutor/methanol/Makefile config.status: creating share/tutor/speptide/Makefile config.status: creating share/template/Makefile config.status: creating share/top/Makefile config.status: creating share/html/Makefile config.status: creating share/html/images/Makefile config.status: creating share/html/online/Makefile config.status: creating man/Makefile config.status: creating man/man1/Makefile config.status: creating src/config.h config.status: executing depfiles commands configure: WARNING: unrecognized options: --without-included-gettext, --disable-rpath, --enable-prefetch-forces + sed -i 's|^hardcode_libdir_flag_spec=.*|hardcode_libdir_flag_spec=""|g' libtool + sed -i 's|^runpath_var=LD_RUN_PATH|runpath_var=DIE_RPATH_DIE|g' libtool + make -j8 Making all in include Making all in . make[2]: Nothing to be done for 'all-am'. Making all in types make[2]: Nothing to be done for 'all'. Making all in src make all-recursive Making all in gmxlib Making all in nonbonded Making all in nb_kernel_x86_64_sse make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel100_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel100_x86_64_sse.s mkdir .libs mkdir: cannot create directory '.libs': File exists mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel100_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel100_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel010_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel010_x86_64_sse.s mkdir .libs mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel010_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel010_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel030_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel030_x86_64_sse.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel030_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel030_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel110_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel110_x86_64_sse.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel110_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel110_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel101_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel101_x86_64_sse.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel101_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel101_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel102_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel102_x86_64_sse.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel102_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel102_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel103_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel103_x86_64_sse.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel103_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel103_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel104_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel104_x86_64_sse.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel104_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel104_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel111_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel111_x86_64_sse.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel111_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel111_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel114_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel114_x86_64_sse.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel114_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel114_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel132_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel132_x86_64_sse.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel132_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel132_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel113_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel113_x86_64_sse.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel113_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel113_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel131_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel131_x86_64_sse.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel131_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel131_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel112_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel112_x86_64_sse.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel112_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel112_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel133_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel133_x86_64_sse.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel133_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel133_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel130_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel130_x86_64_sse.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel130_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel130_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel210_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel210_x86_64_sse.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel210_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel210_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel200_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel200_x86_64_sse.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel200_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel200_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel204_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel204_x86_64_sse.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel204_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel204_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel202_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel202_x86_64_sse.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel202_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel202_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel211_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel211_x86_64_sse.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel211_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel211_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel201_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel201_x86_64_sse.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel201_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel201_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel203_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel203_x86_64_sse.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel203_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel203_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel134_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel134_x86_64_sse.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel134_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel134_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel212_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel212_x86_64_sse.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel212_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel212_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel213_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel213_x86_64_sse.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel213_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel213_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel214_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel214_x86_64_sse.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel214_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel214_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel232_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel232_x86_64_sse.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel232_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel232_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel231_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel231_x86_64_sse.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel231_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel231_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel230_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel230_x86_64_sse.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel230_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel230_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel233_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel233_x86_64_sse.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel233_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel233_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel234_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel234_x86_64_sse.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel234_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel234_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel300_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel300_x86_64_sse.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel300_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel300_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel301_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel301_x86_64_sse.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel301_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel301_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel302_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel302_x86_64_sse.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel302_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel302_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel303_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel303_x86_64_sse.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel303_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel303_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel311_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel311_x86_64_sse.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel311_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel311_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel310_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel310_x86_64_sse.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel310_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel310_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel304_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel304_x86_64_sse.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel304_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel304_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel312_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel312_x86_64_sse.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel312_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel312_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel313_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel313_x86_64_sse.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel313_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel313_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel314_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel314_x86_64_sse.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel314_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel314_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel330_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel330_x86_64_sse.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel330_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel330_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel331_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel331_x86_64_sse.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel331_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel331_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel333_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel333_x86_64_sse.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel333_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel333_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel332_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel332_x86_64_sse.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel332_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel332_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel334_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel334_x86_64_sse.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel334_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel334_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel400_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel400_x86_64_sse.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel400_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel400_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel410_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel410_x86_64_sse.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel410_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel410_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel430_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel430_x86_64_sse.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel430_x86_64_sse.s -fPIC -DPIC -o .libs/nb_kernel430_x86_64_sse.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel_x86_64_sse_test_asm.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel_x86_64_sse_test_asm.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel_x86_64_sse_test_asm.s -fPIC -DPIC -o .libs/nb_kernel_x86_64_sse_test_asm.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse -I../../../../src -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel_x86_64_sse.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel_x86_64_sse.c mpicc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse -I../../../../src -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel_x86_64_sse.c -fPIC -DPIC -o .libs/nb_kernel_x86_64_sse.o ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel_x86_64_sse.c: In function 'nb_kernel_x86_64_sse_test': ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel_x86_64_sse.c:209:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if(log) ^~ ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse/nb_kernel_x86_64_sse.c:212:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' nb_kernel_x86_64_sse_present = TRUE; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' /bin/sh ../../../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o libnb_kernel_x86_64_sse.la nb_kernel010_x86_64_sse.lo nb_kernel030_x86_64_sse.lo nb_kernel100_x86_64_sse.lo nb_kernel101_x86_64_sse.lo nb_kernel102_x86_64_sse.lo nb_kernel103_x86_64_sse.lo nb_kernel104_x86_64_sse.lo nb_kernel110_x86_64_sse.lo nb_kernel111_x86_64_sse.lo nb_kernel112_x86_64_sse.lo nb_kernel113_x86_64_sse.lo nb_kernel114_x86_64_sse.lo nb_kernel130_x86_64_sse.lo nb_kernel131_x86_64_sse.lo nb_kernel132_x86_64_sse.lo nb_kernel133_x86_64_sse.lo nb_kernel134_x86_64_sse.lo nb_kernel200_x86_64_sse.lo nb_kernel201_x86_64_sse.lo nb_kernel202_x86_64_sse.lo nb_kernel203_x86_64_sse.lo nb_kernel204_x86_64_sse.lo nb_kernel210_x86_64_sse.lo nb_kernel211_x86_64_sse.lo nb_kernel212_x86_64_sse.lo nb_kernel213_x86_64_sse.lo nb_kernel214_x86_64_sse.lo nb_kernel230_x86_64_sse.lo nb_kernel231_x86_64_sse.lo nb_kernel232_x86_64_sse.lo nb_kernel233_x86_64_sse.lo nb_kernel234_x86_64_sse.lo nb_kernel300_x86_64_sse.lo nb_kernel301_x86_64_sse.lo nb_kernel302_x86_64_sse.lo nb_kernel303_x86_64_sse.lo nb_kernel304_x86_64_sse.lo nb_kernel310_x86_64_sse.lo nb_kernel311_x86_64_sse.lo nb_kernel312_x86_64_sse.lo nb_kernel313_x86_64_sse.lo nb_kernel314_x86_64_sse.lo nb_kernel330_x86_64_sse.lo nb_kernel331_x86_64_sse.lo nb_kernel332_x86_64_sse.lo nb_kernel333_x86_64_sse.lo nb_kernel334_x86_64_sse.lo nb_kernel400_x86_64_sse.lo nb_kernel410_x86_64_sse.lo nb_kernel430_x86_64_sse.lo nb_kernel_x86_64_sse_test_asm.lo nb_kernel_x86_64_sse.lo -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath ar cru .libs/libnb_kernel_x86_64_sse.a .libs/nb_kernel010_x86_64_sse.o .libs/nb_kernel030_x86_64_sse.o .libs/nb_kernel100_x86_64_sse.o .libs/nb_kernel101_x86_64_sse.o .libs/nb_kernel102_x86_64_sse.o .libs/nb_kernel103_x86_64_sse.o .libs/nb_kernel104_x86_64_sse.o .libs/nb_kernel110_x86_64_sse.o .libs/nb_kernel111_x86_64_sse.o .libs/nb_kernel112_x86_64_sse.o .libs/nb_kernel113_x86_64_sse.o .libs/nb_kernel114_x86_64_sse.o .libs/nb_kernel130_x86_64_sse.o .libs/nb_kernel131_x86_64_sse.o .libs/nb_kernel132_x86_64_sse.o .libs/nb_kernel133_x86_64_sse.o .libs/nb_kernel134_x86_64_sse.o .libs/nb_kernel200_x86_64_sse.o .libs/nb_kernel201_x86_64_sse.o .libs/nb_kernel202_x86_64_sse.o .libs/nb_kernel203_x86_64_sse.o .libs/nb_kernel204_x86_64_sse.o .libs/nb_kernel210_x86_64_sse.o .libs/nb_kernel211_x86_64_sse.o .libs/nb_kernel212_x86_64_sse.o .libs/nb_kernel213_x86_64_sse.o .libs/nb_kernel214_x86_64_sse.o .libs/nb_kernel230_x86_64_sse.o .libs/nb_kernel231_x86_64_sse.o .libs/nb_kernel232_x86_64_sse.o .libs/nb_kernel233_x86_64_sse.o .libs/nb_kernel234_x86_64_sse.o .libs/nb_kernel300_x86_64_sse.o .libs/nb_kernel301_x86_64_sse.o .libs/nb_kernel302_x86_64_sse.o .libs/nb_kernel303_x86_64_sse.o .libs/nb_kernel304_x86_64_sse.o .libs/nb_kernel310_x86_64_sse.o .libs/nb_kernel311_x86_64_sse.o .libs/nb_kernel312_x86_64_sse.o .libs/nb_kernel313_x86_64_sse.o .libs/nb_kernel314_x86_64_sse.o .libs/nb_kernel330_x86_64_sse.o .libs/nb_kernel331_x86_64_sse.o .libs/nb_kernel332_x86_64_sse.o .libs/nb_kernel333_x86_64_sse.o .libs/nb_kernel334_x86_64_sse.o .libs/nb_kernel400_x86_64_sse.o .libs/nb_kernel410_x86_64_sse.o .libs/nb_kernel430_x86_64_sse.o .libs/nb_kernel_x86_64_sse_test_asm.o .libs/nb_kernel_x86_64_sse.o ranlib .libs/libnb_kernel_x86_64_sse.a creating libnb_kernel_x86_64_sse.la (cd .libs && rm -f libnb_kernel_x86_64_sse.la && ln -s ../libnb_kernel_x86_64_sse.la libnb_kernel_x86_64_sse.la) make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' Making all in nb_kernel make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_common.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_common.c make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_outerloop.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_outerloop.c make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb.c make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_innerloop.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_innerloop.c make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_declarations.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_declarations.c make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_metacode.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_metacode.c make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_interactions.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_interactions.c make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -o mknb mknb.o mknb_metacode.o mknb_common.o mknb_declarations.o mknb_outerloop.o mknb_innerloop.o mknb_interactions.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' rm -f kernel-stamp ./mknb -software_invsqrt -fortran >>> Gromacs nonbonded kernel generator (-h for help) >>> Generating single precision functions in Fortran77. >>> Using Gromacs software version of 1/sqrt(x). Progress: 1% Progress: 2% Progress: 4% Progress: 5% Progress: 7% Progress: 8% Progress: 10% Progress: 11% Progress: 13% Progress: 14% Progress: 16% Progress: 17% Progress: 19% Progress: 20% Progress: 22% Progress: 23% Progress: 25% Progress: 26% Progress: 28% Progress: 29% Progress: 31% Progress: 32% Progress: 34% Progress: 35% Progress: 37% Progress: 38% Progress: 40% Progress: 41% Progress: 43% Progress: 44% Progress: 46% Progress: 47% Progress: 49% Progress: 50% Progress: 52% Progress: 53% Progress: 55% Progress: 56% Progress: 58% Progress: 59% Progress: 61% Progress: 62% Progress: 64% Progress: 65% Progress: 67% Progress: 68% Progress: 70% Progress: 71% Progress: 73% Progress: 74% Progress: 76% Progress: 77% Progress: 79% Progress: 80% Progress: 82% Progress: 83% Progress: 85% Progress: 86% Progress: 88% Progress: 89% Progress: 91% Progress: 92% Progress: 94% Progress: 95% Progress: 97% Progress: 98% Progress: 100% make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make all-am make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel.lo ../../../../../src/gmxlib/nonbonded/nb_kernel/nb_kernel.c mpicc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel/nb_kernel.c -fPIC -DPIC -o .libs/nb_kernel.o make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel010_f.lo nb_kernel010_f.f mkdir .libs f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel010_f.f -fPIC -o .libs/nb_kernel010_f.o nb_kernel010_f.f:36:38: & charge, 1 Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:37:37: & facel, 1 Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:40:34: & Vc, 1 Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:169:38: & charge, 1 Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:185:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:172:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:181:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:170:37: & facel, 1 Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:168:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:165:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:183:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:182:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:180:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:171:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:186:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:184:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:178:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:173:34: & Vc, 1 Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:179:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:189:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel100_f.lo nb_kernel100_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel100_f.f -fPIC -o .libs/nb_kernel100_f.o nb_kernel100_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:202:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:189:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:198:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:185:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:182:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:200:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:199:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:197:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:188:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:203:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:201:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:192:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:195:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:191:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:193:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:196:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:194:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:206:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel020_f.lo nb_kernel020_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel020_f.f -fPIC -o .libs/nb_kernel020_f.o nb_kernel020_f.f:36:38: & charge, 1 Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:37:37: & facel, 1 Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:40:34: & Vc, 1 Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:196:38: & charge, 1 Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:212:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:199:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:208:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:197:37: & facel, 1 Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:195:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:192:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:210:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:209:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:207:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:198:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:213:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:211:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:205:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:200:34: & Vc, 1 Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:206:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:216:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel030_f.lo nb_kernel030_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel030_f.f -fPIC -o .libs/nb_kernel030_f.o nb_kernel030_f.f:144:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel030_f.f:320:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel030_f.f:36:38: & charge, 1 Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:37:37: & facel, 1 Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:40:34: & Vc, 1 Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:218:38: & charge, 1 Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:234:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:221:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:230:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:219:37: & facel, 1 Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:217:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:214:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:232:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:231:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:229:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:220:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:235:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:233:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:222:34: & Vc, 1 Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:238:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel101_f.lo nb_kernel101_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel101_f.f -fPIC -o .libs/nb_kernel101_f.o nb_kernel101_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:278:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:265:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:274:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:261:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:258:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:276:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:275:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:273:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:264:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:279:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:277:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:268:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:271:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:267:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:269:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:272:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:270:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:282:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel103_f.lo nb_kernel103_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel103_f.f -fPIC -o .libs/nb_kernel103_f.o nb_kernel103_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:278:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:265:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:274:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:261:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:258:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:276:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:275:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:273:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:264:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:279:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:277:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:268:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:271:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:267:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:269:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:272:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:270:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:282:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel102_f.lo nb_kernel102_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel102_f.f -fPIC -o .libs/nb_kernel102_f.o nb_kernel102_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:444:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:431:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:440:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:427:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:424:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:442:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:441:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:439:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:430:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:445:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:443:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:434:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:437:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:433:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:435:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:438:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:436:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:448:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel110_f.lo nb_kernel110_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel110_f.f -fPIC -o .libs/nb_kernel110_f.o nb_kernel110_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:218:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:205:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:214:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:201:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:198:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:216:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:215:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:213:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:204:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:219:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:217:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:211:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:212:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:222:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel120_f.lo nb_kernel120_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel120_f.f -fPIC -o .libs/nb_kernel120_f.o nb_kernel120_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:220:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:207:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:216:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:203:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:200:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:218:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:217:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:215:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:206:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:221:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:219:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:213:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:214:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:224:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel111_f.lo nb_kernel111_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel111_f.f -fPIC -o .libs/nb_kernel111_f.o nb_kernel111_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:294:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:281:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:290:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:277:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:274:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:292:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:291:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:289:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:280:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:295:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:293:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:287:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:288:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:298:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel113_f.lo nb_kernel113_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel113_f.f -fPIC -o .libs/nb_kernel113_f.o nb_kernel113_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:320:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:307:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:316:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:303:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:300:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:318:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:317:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:315:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:306:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:321:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:319:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:313:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:314:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:324:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel104_f.lo nb_kernel104_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel104_f.f -fPIC -o .libs/nb_kernel104_f.o nb_kernel104_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:444:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:431:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:440:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:427:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:424:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:442:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:441:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:439:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:430:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:445:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:443:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:434:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:437:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:433:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:435:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:438:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:436:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:448:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel112_f.lo nb_kernel112_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel112_f.f -fPIC -o .libs/nb_kernel112_f.o nb_kernel112_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:458:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:445:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:454:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:441:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:438:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:456:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:455:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:453:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:444:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:459:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:457:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:451:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:452:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:462:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel121_f.lo nb_kernel121_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel121_f.f -fPIC -o .libs/nb_kernel121_f.o nb_kernel121_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:296:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:283:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:292:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:279:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:276:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:294:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:293:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:291:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:282:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:297:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:295:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:289:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:290:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:300:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel114_f.lo nb_kernel114_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel114_f.f -fPIC -o .libs/nb_kernel114_f.o nb_kernel114_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:488:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:475:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:484:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:471:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:468:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:486:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:485:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:483:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:474:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:489:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:487:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:481:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:482:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:492:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel130_f.lo nb_kernel130_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel130_f.f -fPIC -o .libs/nb_kernel130_f.o nb_kernel130_f.f:153:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel130_f.f:338:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel130_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:245:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:232:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:241:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:228:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:225:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:243:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:242:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:240:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:231:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:246:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:244:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:249:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel123_f.lo nb_kernel123_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel123_f.f -fPIC -o .libs/nb_kernel123_f.o nb_kernel123_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:329:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:316:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:325:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:312:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:309:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:327:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:326:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:324:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:315:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:330:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:328:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:322:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:323:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:333:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel122_f.lo nb_kernel122_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel122_f.f -fPIC -o .libs/nb_kernel122_f.o nb_kernel122_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:460:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:447:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:456:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:443:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:440:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:458:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:457:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:455:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:446:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:461:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:459:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:453:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:454:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:464:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel131_f.lo nb_kernel131_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel131_f.f -fPIC -o .libs/nb_kernel131_f.o nb_kernel131_f.f:196:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel131_f.f:451:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel131_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:321:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:308:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:317:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:304:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:301:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:319:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:318:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:316:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:307:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:322:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:320:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:325:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel124_f.lo nb_kernel124_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel124_f.f -fPIC -o .libs/nb_kernel124_f.o nb_kernel124_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:497:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:484:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:493:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:480:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:477:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:495:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:494:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:492:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:483:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:498:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:496:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:490:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:491:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:501:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel200_f.lo nb_kernel200_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel200_f.f -fPIC -o .libs/nb_kernel200_f.o nb_kernel200_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:204:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:200:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:187:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:184:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:202:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:201:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:199:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:205:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:203:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:194:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:197:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:193:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:195:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:198:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:196:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:208:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel133_f.lo nb_kernel133_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel133_f.f -fPIC -o .libs/nb_kernel133_f.o nb_kernel133_f.f:210:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel133_f.f:494:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel133_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:352:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:339:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:348:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:335:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:332:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:350:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:349:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:347:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:338:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:353:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:351:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:356:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel132_f.lo nb_kernel132_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel132_f.f -fPIC -o .libs/nb_kernel132_f.o nb_kernel132_f.f:275:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel132_f.f:694:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel132_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:485:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:472:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:481:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:468:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:465:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:483:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:482:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:480:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:471:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:486:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:484:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:489:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel201_f.lo nb_kernel201_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel201_f.f -fPIC -o .libs/nb_kernel201_f.o nb_kernel201_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:282:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:278:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:265:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:262:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:280:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:279:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:277:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:283:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:281:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:272:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:275:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:271:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:273:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:276:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:274:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:286:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel203_f.lo nb_kernel203_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel203_f.f -fPIC -o .libs/nb_kernel203_f.o nb_kernel203_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:282:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:278:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:265:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:262:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:280:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:279:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:277:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:283:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:281:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:272:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:275:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:271:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:273:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:276:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:274:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:286:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel134_f.lo nb_kernel134_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel134_f.f -fPIC -o .libs/nb_kernel134_f.o nb_kernel134_f.f:294:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel134_f.f:746:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel134_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:520:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:507:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:516:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:503:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:500:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:518:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:517:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:515:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:506:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:521:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:519:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:524:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel210_f.lo nb_kernel210_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel210_f.f -fPIC -o .libs/nb_kernel210_f.o nb_kernel210_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:221:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:217:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:204:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:201:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:219:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:218:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:216:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:222:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:220:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:214:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:215:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:225:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel202_f.lo nb_kernel202_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel202_f.f -fPIC -o .libs/nb_kernel202_f.o nb_kernel202_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:454:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:450:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:437:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:434:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:452:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:451:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:449:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:455:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:453:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:444:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:447:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:443:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:445:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:448:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:446:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:458:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel211_f.lo nb_kernel211_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel211_f.f -fPIC -o .libs/nb_kernel211_f.o nb_kernel211_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:299:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:295:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:282:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:279:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:297:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:296:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:294:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:300:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:298:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:292:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:293:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:303:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel204_f.lo nb_kernel204_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel204_f.f -fPIC -o .libs/nb_kernel204_f.o nb_kernel204_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:454:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:450:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:437:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:434:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:452:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:451:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:449:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:455:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:453:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:444:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:447:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:443:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:445:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:448:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:446:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:458:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel213_f.lo nb_kernel213_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel213_f.f -fPIC -o .libs/nb_kernel213_f.o nb_kernel213_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:324:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:320:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:307:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:304:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:322:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:321:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:319:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:325:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:323:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:317:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:318:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:328:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel220_f.lo nb_kernel220_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel220_f.f -fPIC -o .libs/nb_kernel220_f.o nb_kernel220_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:223:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:219:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:206:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:203:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:221:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:220:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:218:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:224:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:222:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:216:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:217:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:227:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel221_f.lo nb_kernel221_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel221_f.f -fPIC -o .libs/nb_kernel221_f.o nb_kernel221_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:301:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:297:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:284:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:281:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:299:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:298:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:296:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:302:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:300:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:294:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:295:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:305:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel212_f.lo nb_kernel212_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel212_f.f -fPIC -o .libs/nb_kernel212_f.o nb_kernel212_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:469:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:465:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:452:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:449:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:467:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:466:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:464:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:470:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:468:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:462:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:463:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:473:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel214_f.lo nb_kernel214_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel214_f.f -fPIC -o .libs/nb_kernel214_f.o nb_kernel214_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:498:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:494:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:481:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:478:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:496:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:495:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:493:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:499:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:497:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:491:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:492:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:502:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel223_f.lo nb_kernel223_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel223_f.f -fPIC -o .libs/nb_kernel223_f.o nb_kernel223_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:333:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:329:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:316:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:313:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:331:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:330:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:328:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:334:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:332:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:326:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:327:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:337:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel230_f.lo nb_kernel230_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel230_f.f -fPIC -o .libs/nb_kernel230_f.o nb_kernel230_f.f:155:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel230_f.f:342:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel230_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:247:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:243:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:230:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:227:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:245:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:244:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:242:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:248:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:246:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:251:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel222_f.lo nb_kernel222_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel222_f.f -fPIC -o .libs/nb_kernel222_f.o nb_kernel222_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:471:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:467:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:454:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:451:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:469:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:468:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:466:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:472:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:470:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:464:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:465:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:475:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel231_f.lo nb_kernel231_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel231_f.f -fPIC -o .libs/nb_kernel231_f.o nb_kernel231_f.f:198:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel231_f.f:457:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel231_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:325:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:321:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:308:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:305:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:323:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:322:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:320:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:326:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:324:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:329:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel300_f.lo nb_kernel300_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel300_f.f -fPIC -o .libs/nb_kernel300_f.o nb_kernel300_f.f:139:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel300_f.f:300:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel300_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:219:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:206:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:215:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:202:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:199:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:217:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:216:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:214:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:205:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:220:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:218:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:209:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:208:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:210:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:211:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:223:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel233_f.lo nb_kernel233_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel233_f.f -fPIC -o .libs/nb_kernel233_f.o nb_kernel233_f.f:211:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel233_f.f:499:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel233_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:356:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:352:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:339:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:336:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:354:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:353:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:351:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:357:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:355:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:360:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel224_f.lo nb_kernel224_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel224_f.f -fPIC -o .libs/nb_kernel224_f.o nb_kernel224_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:507:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:503:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:490:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:487:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:505:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:504:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:502:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:508:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:506:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:500:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:501:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:511:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel301_f.lo nb_kernel301_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel301_f.f -fPIC -o .libs/nb_kernel301_f.o nb_kernel301_f.f:182:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel301_f.f:209:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel301_f.f:235:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel301_f.f:439:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel301_f.f:454:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel301_f.f:468:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel301_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:321:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:308:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:317:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:304:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:301:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:319:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:318:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:316:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:307:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:322:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:320:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:311:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:310:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:312:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:313:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:325:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel232_f.lo nb_kernel232_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel232_f.f -fPIC -o .libs/nb_kernel232_f.o nb_kernel232_f.f:277:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel232_f.f:706:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel232_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:495:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:491:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:478:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:475:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:493:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:492:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:490:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:496:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:494:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:499:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel303_f.lo nb_kernel303_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel303_f.f -fPIC -o .libs/nb_kernel303_f.o nb_kernel303_f.f:182:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel303_f.f:208:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel303_f.f:235:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel303_f.f:439:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel303_f.f:453:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel303_f.f:468:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel303_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:321:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:308:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:317:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:304:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:301:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:319:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:318:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:316:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:307:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:322:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:320:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:311:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:310:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:312:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:313:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:325:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel310_f.lo nb_kernel310_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel310_f.f -fPIC -o .libs/nb_kernel310_f.o nb_kernel310_f.f:152:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel310_f.f:332:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel310_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:238:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:225:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:234:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:221:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:218:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:236:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:235:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:233:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:224:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:239:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:237:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:242:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel234_f.lo nb_kernel234_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel234_f.f -fPIC -o .libs/nb_kernel234_f.o nb_kernel234_f.f:295:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel234_f.f:757:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel234_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:530:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:526:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:513:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:510:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:528:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:527:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:525:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:531:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:529:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:534:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel311_f.lo nb_kernel311_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel311_f.f -fPIC -o .libs/nb_kernel311_f.o nb_kernel311_f.f:195:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel311_f.f:227:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel311_f.f:253:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel311_f.f:471:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel311_f.f:490:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel311_f.f:504:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel311_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:340:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:327:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:336:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:323:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:320:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:338:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:337:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:335:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:326:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:341:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:339:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:344:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel302_f.lo nb_kernel302_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel302_f.f -fPIC -o .libs/nb_kernel302_f.o nb_kernel302_f.f:263:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:290:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:317:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:344:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:371:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:398:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:425:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:452:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:479:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:764:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:779:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:794:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:809:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:824:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:839:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:854:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:869:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:884:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:565:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:552:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:561:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:548:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:545:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:563:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:562:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:560:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:551:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:566:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:564:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:555:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:554:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:556:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:557:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:569:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel320_f.lo nb_kernel320_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel320_f.f -fPIC -o .libs/nb_kernel320_f.o nb_kernel320_f.f:153:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel320_f.f:335:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel320_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:240:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:227:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:236:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:223:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:220:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:238:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:237:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:235:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:226:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:241:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:239:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:244:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel313_f.lo nb_kernel313_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel313_f.f -fPIC -o .libs/nb_kernel313_f.o nb_kernel313_f.f:221:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel313_f.f:247:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel313_f.f:274:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel313_f.f:508:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel313_f.f:522:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel313_f.f:537:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel313_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:364:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:351:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:360:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:347:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:344:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:362:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:361:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:359:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:350:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:365:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:363:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:368:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel304_f.lo nb_kernel304_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel304_f.f -fPIC -o .libs/nb_kernel304_f.o nb_kernel304_f.f:263:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:290:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:317:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:344:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:371:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:398:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:425:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:452:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:479:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:764:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:779:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:794:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:809:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:824:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:839:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:854:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:869:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:884:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:565:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:552:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:561:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:548:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:545:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:563:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:562:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:560:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:551:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:566:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:564:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:555:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:554:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:556:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:557:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:569:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel321_f.lo nb_kernel321_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel321_f.f -fPIC -o .libs/nb_kernel321_f.o nb_kernel321_f.f:196:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel321_f.f:229:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel321_f.f:255:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel321_f.f:474:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel321_f.f:494:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel321_f.f:508:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel321_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:342:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:329:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:338:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:325:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:322:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:340:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:339:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:337:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:328:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:343:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:341:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:346:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel312_f.lo nb_kernel312_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel312_f.f -fPIC -o .libs/nb_kernel312_f.o nb_kernel312_f.f:274:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:306:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:333:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:360:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:387:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:414:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:441:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:468:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:495:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:792:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:811:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:826:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:841:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:856:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:871:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:886:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:901:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:916:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:582:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:569:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:578:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:565:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:562:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:580:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:579:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:577:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:568:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:583:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:581:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:586:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel323_f.lo nb_kernel323_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel323_f.f -fPIC -o .libs/nb_kernel323_f.o nb_kernel323_f.f:230:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel323_f.f:256:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel323_f.f:283:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel323_f.f:526:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel323_f.f:540:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel323_f.f:555:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel323_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:373:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:360:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:369:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:356:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:353:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:371:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:370:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:368:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:359:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:374:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:372:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:377:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel330_f.lo nb_kernel330_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel330_f.f -fPIC -o .libs/nb_kernel330_f.o nb_kernel330_f.f:150:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel330_f.f:343:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel330_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:252:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:239:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:248:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:235:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:232:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:250:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:249:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:247:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:238:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:253:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:251:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:256:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel314_f.lo nb_kernel314_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel314_f.f -fPIC -o .libs/nb_kernel314_f.o nb_kernel314_f.f:304:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:331:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:358:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:385:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:412:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:439:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:466:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:493:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:520:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:837:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:852:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:867:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:882:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:897:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:912:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:927:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:942:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:957:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:610:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:597:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:606:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:593:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:590:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:608:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:607:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:605:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:596:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:611:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:609:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:614:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel331_f.lo nb_kernel331_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel331_f.f -fPIC -o .libs/nb_kernel331_f.o nb_kernel331_f.f:193:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel331_f.f:241:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel331_f.f:267:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel331_f.f:482:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel331_f.f:514:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel331_f.f:528:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel331_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:354:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:341:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:350:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:337:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:334:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:352:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:351:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:349:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:340:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:355:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:353:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:358:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel322_f.lo nb_kernel322_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel322_f.f -fPIC -o .libs/nb_kernel322_f.o nb_kernel322_f.f:275:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:308:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:335:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:362:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:389:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:416:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:443:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:470:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:497:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:795:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:815:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:830:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:845:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:860:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:875:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:890:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:905:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:920:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:584:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:571:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:580:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:567:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:564:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:582:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:581:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:579:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:570:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:585:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:583:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:588:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel400_f.lo nb_kernel400_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel400_f.f -fPIC -o .libs/nb_kernel400_f.o nb_kernel400_f.f:147:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel400_f.f:317:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel400_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:231:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:218:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:227:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:214:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:211:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:217:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:232:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:230:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:221:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:224:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:220:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:222:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:225:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:223:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:235:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel410_f.lo nb_kernel410_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel410_f.f -fPIC -o .libs/nb_kernel410_f.o nb_kernel410_f.f:160:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel410_f.f:349:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel410_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:250:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:237:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:246:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:233:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:230:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:236:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:251:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:249:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:243:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:244:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:254:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel333_f.lo nb_kernel333_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel333_f.f -fPIC -o .libs/nb_kernel333_f.o nb_kernel333_f.f:210:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel333_f.f:249:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel333_f.f:275:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel333_f.f:302:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel333_f.f:534:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel333_f.f:559:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel333_f.f:573:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel333_f.f:588:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel333_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:392:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:379:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:388:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:375:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:372:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:390:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:389:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:387:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:378:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:393:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:391:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:396:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel324_f.lo nb_kernel324_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel324_f.f -fPIC -o .libs/nb_kernel324_f.o nb_kernel324_f.f:313:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:340:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:367:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:394:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:421:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:448:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:475:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:502:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:529:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:855:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:870:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:885:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:900:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:915:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:930:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:945:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:960:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:975:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:619:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:606:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:615:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:602:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:599:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:617:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:616:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:614:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:605:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:620:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:618:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:623:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel420_f.lo nb_kernel420_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel420_f.f -fPIC -o .libs/nb_kernel420_f.o nb_kernel420_f.f:161:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel420_f.f:352:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel420_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:252:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:239:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:248:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:235:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:232:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:238:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:253:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:251:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:245:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:246:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:256:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel_f77sync.lo ../../../../../src/gmxlib/nonbonded/nb_kernel/nb_kernel_f77sync.c mpicc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel/nb_kernel_f77sync.c -fPIC -DPIC -o .libs/nb_kernel_f77sync.o make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel430_f.lo nb_kernel430_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel430_f.f -fPIC -o .libs/nb_kernel430_f.o nb_kernel430_f.f:158:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel430_f.f:177:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel430_f.f:365:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel430_f.f:379:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel430_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel430_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel430_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel430_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel430_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel430_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel430_f.f:269:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel430_f.f:256:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel430_f.f:265:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel430_f.f:252:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel430_f.f:249:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel430_f.f:255:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel430_f.f:270:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel430_f.f:268:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel430_f.f:273:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel332_f.lo nb_kernel332_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel332_f.f -fPIC -o .libs/nb_kernel332_f.o nb_kernel332_f.f:272:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:320:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:347:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:374:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:401:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:428:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:455:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:482:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:509:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:803:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:835:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:850:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:865:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:880:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:895:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:910:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:925:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:940:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:596:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:583:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:592:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:579:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:576:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:594:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:593:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:591:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:582:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:597:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:595:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:600:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel334_f.lo nb_kernel334_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel334_f.f -fPIC -o .libs/nb_kernel334_f.o nb_kernel334_f.f:294:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:332:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:359:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:386:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:413:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:440:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:467:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:494:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:521:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:548:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:864:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:888:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:903:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:918:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:933:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:948:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:963:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:978:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:993:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:1008:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:638:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:625:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:634:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:621:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:618:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:636:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:635:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:633:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:624:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:639:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:637:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:642:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o libnb_kernel.la nb_kernel.lo nb_kernel010_f.lo nb_kernel020_f.lo nb_kernel030_f.lo nb_kernel100_f.lo nb_kernel101_f.lo nb_kernel102_f.lo nb_kernel103_f.lo nb_kernel104_f.lo nb_kernel110_f.lo nb_kernel111_f.lo nb_kernel112_f.lo nb_kernel113_f.lo nb_kernel114_f.lo nb_kernel120_f.lo nb_kernel121_f.lo nb_kernel122_f.lo nb_kernel123_f.lo nb_kernel124_f.lo nb_kernel130_f.lo nb_kernel131_f.lo nb_kernel132_f.lo nb_kernel133_f.lo nb_kernel134_f.lo nb_kernel200_f.lo nb_kernel201_f.lo nb_kernel202_f.lo nb_kernel203_f.lo nb_kernel204_f.lo nb_kernel210_f.lo nb_kernel211_f.lo nb_kernel212_f.lo nb_kernel213_f.lo nb_kernel214_f.lo nb_kernel220_f.lo nb_kernel221_f.lo nb_kernel222_f.lo nb_kernel223_f.lo nb_kernel224_f.lo nb_kernel230_f.lo nb_kernel231_f.lo nb_kernel232_f.lo nb_kernel233_f.lo nb_kernel234_f.lo nb_kernel300_f.lo nb_kernel301_f.lo nb_kernel302_f.lo nb_kernel303_f.lo nb_kernel304_f.lo nb_kernel310_f.lo nb_kernel311_f.lo nb_kernel312_f.lo nb_kernel313_f.lo nb_kernel314_f.lo nb_kernel320_f.lo nb_kernel321_f.lo nb_kernel322_f.lo nb_kernel323_f.lo nb_kernel324_f.lo nb_kernel330_f.lo nb_kernel331_f.lo nb_kernel332_f.lo nb_kernel333_f.lo nb_kernel334_f.lo nb_kernel400_f.lo nb_kernel410_f.lo nb_kernel420_f.lo nb_kernel430_f.lo nb_kernel_f77sync.lo -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath ar cru .libs/libnb_kernel.a .libs/nb_kernel.o .libs/nb_kernel010_f.o .libs/nb_kernel020_f.o .libs/nb_kernel030_f.o .libs/nb_kernel100_f.o .libs/nb_kernel101_f.o .libs/nb_kernel102_f.o .libs/nb_kernel103_f.o .libs/nb_kernel104_f.o .libs/nb_kernel110_f.o .libs/nb_kernel111_f.o .libs/nb_kernel112_f.o .libs/nb_kernel113_f.o .libs/nb_kernel114_f.o .libs/nb_kernel120_f.o .libs/nb_kernel121_f.o .libs/nb_kernel122_f.o .libs/nb_kernel123_f.o .libs/nb_kernel124_f.o .libs/nb_kernel130_f.o .libs/nb_kernel131_f.o .libs/nb_kernel132_f.o .libs/nb_kernel133_f.o .libs/nb_kernel134_f.o .libs/nb_kernel200_f.o .libs/nb_kernel201_f.o .libs/nb_kernel202_f.o .libs/nb_kernel203_f.o .libs/nb_kernel204_f.o .libs/nb_kernel210_f.o .libs/nb_kernel211_f.o .libs/nb_kernel212_f.o .libs/nb_kernel213_f.o .libs/nb_kernel214_f.o .libs/nb_kernel220_f.o .libs/nb_kernel221_f.o .libs/nb_kernel222_f.o .libs/nb_kernel223_f.o .libs/nb_kernel224_f.o .libs/nb_kernel230_f.o .libs/nb_kernel231_f.o .libs/nb_kernel232_f.o .libs/nb_kernel233_f.o .libs/nb_kernel234_f.o .libs/nb_kernel300_f.o .libs/nb_kernel301_f.o .libs/nb_kernel302_f.o .libs/nb_kernel303_f.o .libs/nb_kernel304_f.o .libs/nb_kernel310_f.o .libs/nb_kernel311_f.o .libs/nb_kernel312_f.o .libs/nb_kernel313_f.o .libs/nb_kernel314_f.o .libs/nb_kernel320_f.o .libs/nb_kernel321_f.o .libs/nb_kernel322_f.o .libs/nb_kernel323_f.o .libs/nb_kernel324_f.o .libs/nb_kernel330_f.o .libs/nb_kernel331_f.o .libs/nb_kernel332_f.o .libs/nb_kernel333_f.o .libs/nb_kernel334_f.o .libs/nb_kernel400_f.o .libs/nb_kernel410_f.o .libs/nb_kernel420_f.o .libs/nb_kernel430_f.o .libs/nb_kernel_f77sync.o ranlib .libs/libnb_kernel.a creating libnb_kernel.la (cd .libs && rm -f libnb_kernel.la && ln -s ../libnb_kernel.la libnb_kernel.la) make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_generic.lo ../../../../src/gmxlib/nonbonded/nb_generic.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/nonbonded/nb_generic.c -fPIC -DPIC -o .libs/nb_generic.o ../../../../src/gmxlib/nonbonded/nb_generic.c: In function 'gmx_nb_generic_kernel': ../../../../src/gmxlib/nonbonded/nb_generic.c:82:16: warning: unused variable 'shift' [-Wunused-variable] int * shift; ^~~~~ ../../../../src/gmxlib/nonbonded/nb_generic.c:62:25: warning: unused variable 'gbtabscale' [-Wunused-variable] real facel,gbtabscale; ^~~~~~~~~~ ../../../../src/gmxlib/nonbonded/nb_generic.c:61:19: warning: unused variable 'nri' [-Wunused-variable] int nri,ntype,table_nelements,icoul,ivdw; ^~~ In file included from ../../../../src/gmxlib/nonbonded/nb_generic.c:43: At top level: ../../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../../include/vec.h:121, from ../../../../src/gmxlib/nonbonded/nb_generic.c:43: ../../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_free_energy.lo ../../../../src/gmxlib/nonbonded/nb_free_energy.c mkdir .libs mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/nonbonded/nb_free_energy.c -fPIC -DPIC -o .libs/nb_free_energy.o ../../../../src/gmxlib/nonbonded/nb_free_energy.c: In function 'gmx_nb_free_energy_kernel': ../../../../src/gmxlib/nonbonded/nb_free_energy.c:100:25: warning: unused variable 'H' [-Wunused-variable] real Y,F,G,H,Fp,Geps,Heps2,eps,eps2,VV,FF; ^ ../../../../src/gmxlib/nonbonded/nb_free_energy.c:100:23: warning: unused variable 'G' [-Wunused-variable] real Y,F,G,H,Fp,Geps,Heps2,eps,eps2,VV,FF; ^ ../../../../src/gmxlib/nonbonded/nb_free_energy.c:89:19: warning: unused variable 'rinvsix' [-Wunused-variable] real rinvsix; ^~~~~~~ ../../../../src/gmxlib/nonbonded/nb_free_energy.c:86:27: warning: unused variable 'vcoul' [-Wunused-variable] real qqA,qqB,vcoul,vctot,krsq; ^~~~~ In file included from ../../../../src/gmxlib/nonbonded/nb_free_energy.c:42: At top level: ../../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../../include/vec.h:121, from ../../../../src/gmxlib/nonbonded/nb_free_energy.c:42: ../../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nonbonded.lo ../../../../src/gmxlib/nonbonded/nonbonded.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/nonbonded/nonbonded.c -fPIC -DPIC -o .libs/nonbonded.o ../../../../src/gmxlib/nonbonded/nonbonded.c: In function 'do_nonbonded': ../../../../src/gmxlib/nonbonded/nonbonded.c:283:18: warning: unused variable 'fp' [-Wunused-variable] FILE * fp; ^~ ../../../../src/gmxlib/nonbonded/nonbonded.c:281:18: warning: unused variable 'bWater' [-Wunused-variable] bool bWater; ^~~~~~ ../../../../src/gmxlib/nonbonded/nonbonded.c:279:43: warning: unused variable 'sz' [-Wunused-variable] int n,n0,n1,i,i0,i1,nrnb_ind,sz; ^~ ../../../../src/gmxlib/nonbonded/nonbonded.c: In function 'do_listed_vdw_q': ../../../../src/gmxlib/nonbonded/nonbonded.c:547:15: warning: unused variable 'tmplist' [-Wunused-variable] t_nblist tmplist; ^~~~~~~ ../../../../src/gmxlib/nonbonded/nonbonded.c:538:25: warning: unused variable 'i2' [-Wunused-variable] int i0=0,i1=1,i2=2; ^~ In file included from ../../../../src/gmxlib/nonbonded/nonbonded.c:53: At top level: ../../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../../src/gmxlib/nonbonded/nonbonded.c:50: ../../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../../include/vec.h:121, from ../../../../src/gmxlib/nonbonded/nonbonded.c:50: ../../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded' /bin/sh ../../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o libnonbonded.la nonbonded.lo nb_free_energy.lo nb_generic.lo nb_kernel_x86_64_sse/libnb_kernel_x86_64_sse.la nb_kernel/libnb_kernel.la -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath rm -fr .libs/libnonbonded.lax mkdir .libs/libnonbonded.lax rm -fr .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a mkdir .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a (cd .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a && ar x /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse/.libs/libnb_kernel_x86_64_sse.a) rm -fr .libs/libnonbonded.lax/libnb_kernel.a mkdir .libs/libnonbonded.lax/libnb_kernel.a (cd .libs/libnonbonded.lax/libnb_kernel.a && ar x /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel/.libs/libnb_kernel.a) ar cru .libs/libnonbonded.a .libs/nonbonded.o .libs/nb_free_energy.o .libs/nb_generic.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel_x86_64_sse_test_asm.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel430_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel410_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel400_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel334_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel333_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel332_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel331_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel330_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel314_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel313_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel312_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel311_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel310_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel304_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel303_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel302_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel301_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel300_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel234_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel233_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel232_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel231_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel230_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel214_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel213_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel212_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel211_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel210_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel204_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel203_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel202_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel201_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel200_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel134_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel133_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel132_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel131_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel130_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel114_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel113_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel112_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel111_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel110_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel104_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel103_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel102_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel101_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel100_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel030_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse.a/nb_kernel010_x86_64_sse.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel_f77sync.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel430_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel420_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel410_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel400_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel334_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel333_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel332_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel331_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel330_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel324_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel323_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel322_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel321_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel320_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel314_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel313_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel312_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel311_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel310_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel304_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel303_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel302_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel301_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel300_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel234_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel233_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel232_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel231_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel230_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel224_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel223_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel222_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel221_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel220_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel214_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel213_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel212_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel211_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel210_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel204_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel203_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel202_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel201_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel200_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel134_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel133_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel132_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel131_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel130_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel124_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel123_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel122_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel121_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel120_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel114_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel113_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel112_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel111_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel110_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel104_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel103_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel102_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel101_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel100_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel030_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel020_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel010_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel.o ranlib .libs/libnonbonded.a rm -fr .libs/libnonbonded.lax creating libnonbonded.la (cd .libs && rm -f libnonbonded.la && ln -s ../libnonbonded.la libnonbonded.la) make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded' Making all in gmx_blas make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dasum.lo ../../../../src/gmxlib/gmx_blas/dasum.c mkdir .libs mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dasum.c -fPIC -DPIC -o .libs/dasum.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dcopy.lo ../../../../src/gmxlib/gmx_blas/dcopy.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dcopy.c -fPIC -DPIC -o .libs/dcopy.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o drot.lo ../../../../src/gmxlib/gmx_blas/drot.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/drot.c -fPIC -DPIC -o .libs/drot.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dswap.lo ../../../../src/gmxlib/gmx_blas/dswap.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dswap.c -fPIC -DPIC -o .libs/dswap.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dger.lo ../../../../src/gmxlib/gmx_blas/dger.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dger.c -fPIC -DPIC -o .libs/dger.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dsyr2.lo ../../../../src/gmxlib/gmx_blas/dsyr2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dsyr2.c -fPIC -DPIC -o .libs/dsyr2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dgemm.lo ../../../../src/gmxlib/gmx_blas/dgemm.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dgemm.c -fPIC -DPIC -o .libs/dgemm.o ../../../../src/gmxlib/gmx_blas/dgemm.c: In function 'dgemm_': ../../../../src/gmxlib/gmx_blas/dgemm.c:27:19: warning: variable 'nrowb' set but not used [-Wunused-but-set-variable] int nrowa,ncola,nrowb; ^~~~~ ../../../../src/gmxlib/gmx_blas/dgemm.c:27:13: warning: variable 'ncola' set but not used [-Wunused-but-set-variable] int nrowa,ncola,nrowb; ^~~~~ ../../../../src/gmxlib/gmx_blas/dgemm.c:27:7: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable] int nrowa,ncola,nrowb; ^~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o daxpy.lo ../../../../src/gmxlib/gmx_blas/daxpy.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/daxpy.c -fPIC -DPIC -o .libs/daxpy.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dtrmm.lo ../../../../src/gmxlib/gmx_blas/dtrmm.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dtrmm.c -fPIC -DPIC -o .libs/dtrmm.o ../../../../src/gmxlib/gmx_blas/dtrmm.c: In function 'dtrmm_': ../../../../src/gmxlib/gmx_blas/dtrmm.c:32:9: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable] int nrowa; ^~~~~ ../../../../src/gmxlib/gmx_blas/dtrmm.c:29:20: warning: variable 'info' set but not used [-Wunused-but-set-variable] int i__, j, k, info; ^~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ddot.lo ../../../../src/gmxlib/gmx_blas/ddot.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/ddot.c -fPIC -DPIC -o .libs/ddot.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dnrm2.lo ../../../../src/gmxlib/gmx_blas/dnrm2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dnrm2.c -fPIC -DPIC -o .libs/dnrm2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dgemv.lo ../../../../src/gmxlib/gmx_blas/dgemv.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dgemv.c -fPIC -DPIC -o .libs/dgemv.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dscal.lo ../../../../src/gmxlib/gmx_blas/dscal.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dscal.c -fPIC -DPIC -o .libs/dscal.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dsymv.lo ../../../../src/gmxlib/gmx_blas/dsymv.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dsymv.c -fPIC -DPIC -o .libs/dsymv.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o idamax.lo ../../../../src/gmxlib/gmx_blas/idamax.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/idamax.c -fPIC -DPIC -o .libs/idamax.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sasum.lo ../../../../src/gmxlib/gmx_blas/sasum.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/sasum.c -fPIC -DPIC -o .libs/sasum.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dtrsm.lo ../../../../src/gmxlib/gmx_blas/dtrsm.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dtrsm.c -fPIC -DPIC -o .libs/dtrsm.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o scopy.lo ../../../../src/gmxlib/gmx_blas/scopy.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/scopy.c -fPIC -DPIC -o .libs/scopy.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dtrmv.lo ../../../../src/gmxlib/gmx_blas/dtrmv.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dtrmv.c -fPIC -DPIC -o .libs/dtrmv.o ../../../../src/gmxlib/gmx_blas/dtrmv.c: In function 'dtrmv_': ../../../../src/gmxlib/gmx_blas/dtrmv.c:18:29: warning: variable 'info' set but not used [-Wunused-but-set-variable] int i__, j, ix, jx, kx, info; ^~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dsyr2k.lo ../../../../src/gmxlib/gmx_blas/dsyr2k.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dsyr2k.c -fPIC -DPIC -o .libs/dsyr2k.o ../../../../src/gmxlib/gmx_blas/dsyr2k.c: In function 'dsyr2k_': ../../../../src/gmxlib/gmx_blas/dsyr2k.c:23:7: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable] int nrowa; ^~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sgemm.lo ../../../../src/gmxlib/gmx_blas/sgemm.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/sgemm.c -fPIC -DPIC -o .libs/sgemm.o ../../../../src/gmxlib/gmx_blas/sgemm.c: In function 'sgemm_': ../../../../src/gmxlib/gmx_blas/sgemm.c:26:19: warning: variable 'nrowb' set but not used [-Wunused-but-set-variable] int nrowa,ncola,nrowb; ^~~~~ ../../../../src/gmxlib/gmx_blas/sgemm.c:26:13: warning: variable 'ncola' set but not used [-Wunused-but-set-variable] int nrowa,ncola,nrowb; ^~~~~ ../../../../src/gmxlib/gmx_blas/sgemm.c:26:7: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable] int nrowa,ncola,nrowb; ^~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o srot.lo ../../../../src/gmxlib/gmx_blas/srot.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/srot.c -fPIC -DPIC -o .libs/srot.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sger.lo ../../../../src/gmxlib/gmx_blas/sger.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/sger.c -fPIC -DPIC -o .libs/sger.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sswap.lo ../../../../src/gmxlib/gmx_blas/sswap.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/sswap.c -fPIC -DPIC -o .libs/sswap.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ssyr2.lo ../../../../src/gmxlib/gmx_blas/ssyr2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/ssyr2.c -fPIC -DPIC -o .libs/ssyr2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o saxpy.lo ../../../../src/gmxlib/gmx_blas/saxpy.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/saxpy.c -fPIC -DPIC -o .libs/saxpy.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sdot.lo ../../../../src/gmxlib/gmx_blas/sdot.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/sdot.c -fPIC -DPIC -o .libs/sdot.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o snrm2.lo ../../../../src/gmxlib/gmx_blas/snrm2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/snrm2.c -fPIC -DPIC -o .libs/snrm2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sscal.lo ../../../../src/gmxlib/gmx_blas/sscal.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/sscal.c -fPIC -DPIC -o .libs/sscal.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sgemv.lo ../../../../src/gmxlib/gmx_blas/sgemv.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/sgemv.c -fPIC -DPIC -o .libs/sgemv.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o strmm.lo ../../../../src/gmxlib/gmx_blas/strmm.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/strmm.c -fPIC -DPIC -o .libs/strmm.o ../../../../src/gmxlib/gmx_blas/strmm.c: In function 'strmm_': ../../../../src/gmxlib/gmx_blas/strmm.c:31:9: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable] int nrowa; ^~~~~ ../../../../src/gmxlib/gmx_blas/strmm.c:28:20: warning: variable 'info' set but not used [-Wunused-but-set-variable] int i__, j, k, info; ^~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o strsm.lo ../../../../src/gmxlib/gmx_blas/strsm.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/strsm.c -fPIC -DPIC -o .libs/strsm.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o isamax.lo ../../../../src/gmxlib/gmx_blas/isamax.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/isamax.c -fPIC -DPIC -o .libs/isamax.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ssymv.lo ../../../../src/gmxlib/gmx_blas/ssymv.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/ssymv.c -fPIC -DPIC -o .libs/ssymv.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ssyr2k.lo ../../../../src/gmxlib/gmx_blas/ssyr2k.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/ssyr2k.c -fPIC -DPIC -o .libs/ssyr2k.o ../../../../src/gmxlib/gmx_blas/ssyr2k.c: In function 'ssyr2k_': ../../../../src/gmxlib/gmx_blas/ssyr2k.c:22:7: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable] int nrowa; ^~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o strmv.lo ../../../../src/gmxlib/gmx_blas/strmv.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/strmv.c -fPIC -DPIC -o .libs/strmv.o ../../../../src/gmxlib/gmx_blas/strmv.c: In function 'strmv_': ../../../../src/gmxlib/gmx_blas/strmv.c:18:29: warning: variable 'info' set but not used [-Wunused-but-set-variable] int i__, j, ix, jx, kx, info; ^~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o libblas.la dasum.lo dcopy.lo dgemm.lo dger.lo drot.lo dswap.lo dsyr2.lo dtrmm.lo dtrsm.lo daxpy.lo ddot.lo dgemv.lo dnrm2.lo dscal.lo dsymv.lo dsyr2k.lo dtrmv.lo idamax.lo sasum.lo scopy.lo sgemm.lo sger.lo srot.lo sswap.lo ssyr2.lo strmm.lo strsm.lo saxpy.lo sdot.lo sgemv.lo snrm2.lo sscal.lo ssymv.lo ssyr2k.lo strmv.lo isamax.lo -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath ar cru .libs/libblas.a .libs/dasum.o .libs/dcopy.o .libs/dgemm.o .libs/dger.o .libs/drot.o .libs/dswap.o .libs/dsyr2.o .libs/dtrmm.o .libs/dtrsm.o .libs/daxpy.o .libs/ddot.o .libs/dgemv.o .libs/dnrm2.o .libs/dscal.o .libs/dsymv.o .libs/dsyr2k.o .libs/dtrmv.o .libs/idamax.o .libs/sasum.o .libs/scopy.o .libs/sgemm.o .libs/sger.o .libs/srot.o .libs/sswap.o .libs/ssyr2.o .libs/strmm.o .libs/strsm.o .libs/saxpy.o .libs/sdot.o .libs/sgemv.o .libs/snrm2.o .libs/sscal.o .libs/ssymv.o .libs/ssyr2k.o .libs/strmv.o .libs/isamax.o ranlib .libs/libblas.a creating libblas.la (cd .libs && rm -f libblas.la && ln -s ../libblas.la libblas.la) make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' Making all in gmx_lapack make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dgetf2.lo ../../../../src/gmxlib/gmx_lapack/dgetf2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgetf2.c -fPIC -DPIC -o .libs/dgetf2.o ../../../../src/gmxlib/gmx_lapack/dgetf2.c: In function 'dgetf2_': ../../../../src/gmxlib/gmx_lapack/dgetf2.c:17:10: warning: variable 'one' set but not used [-Wunused-but-set-variable] double one,minusone; ^~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlarnv.lo ../../../../src/gmxlib/gmx_lapack/dlarnv.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlarnv.c -fPIC -DPIC -o .libs/dlarnv.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlamrg.lo ../../../../src/gmxlib/gmx_lapack/dlamrg.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlamrg.c -fPIC -DPIC -o .libs/dlamrg.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dorgl2.lo ../../../../src/gmxlib/gmx_lapack/dorgl2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dorgl2.c -fPIC -DPIC -o .libs/dorgl2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasq6.lo ../../../../src/gmxlib/gmx_lapack/dlasq6.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasq6.c -fPIC -DPIC -o .libs/dlasq6.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasd0.lo ../../../../src/gmxlib/gmx_lapack/dlasd0.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasd0.c -fPIC -DPIC -o .libs/dlasd0.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasda.lo ../../../../src/gmxlib/gmx_lapack/dlasda.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasda.c -fPIC -DPIC -o .libs/dlasda.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dbdsdc.lo ../../../../src/gmxlib/gmx_lapack/dbdsdc.c mkdir .libs mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dbdsdc.c -fPIC -DPIC -o .libs/dbdsdc.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dormqr.lo ../../../../src/gmxlib/gmx_lapack/dormqr.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dormqr.c -fPIC -DPIC -o .libs/dormqr.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dgetrf.lo ../../../../src/gmxlib/gmx_lapack/dgetrf.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgetrf.c -fPIC -DPIC -o .libs/dgetrf.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlange.lo ../../../../src/gmxlib/gmx_lapack/dlange.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlange.c -fPIC -DPIC -o .libs/dlange.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasd1.lo ../../../../src/gmxlib/gmx_lapack/dlasd1.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasd1.c -fPIC -DPIC -o .libs/dlasd1.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dtrtri.lo ../../../../src/gmxlib/gmx_lapack/dtrtri.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dtrtri.c -fPIC -DPIC -o .libs/dtrtri.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasdq.lo ../../../../src/gmxlib/gmx_lapack/dlasdq.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasdq.c -fPIC -DPIC -o .libs/dlasdq.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dormtr.lo ../../../../src/gmxlib/gmx_lapack/dormtr.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dormtr.c -fPIC -DPIC -o .libs/dormtr.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dgebd2.lo ../../../../src/gmxlib/gmx_lapack/dgebd2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgebd2.c -fPIC -DPIC -o .libs/dgebd2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dorglq.lo ../../../../src/gmxlib/gmx_lapack/dorglq.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dorglq.c -fPIC -DPIC -o .libs/dorglq.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlanst.lo ../../../../src/gmxlib/gmx_lapack/dlanst.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlanst.c -fPIC -DPIC -o .libs/dlanst.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasr.lo ../../../../src/gmxlib/gmx_lapack/dlasr.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasr.c -fPIC -DPIC -o .libs/dlasr.o ../../../../src/gmxlib/gmx_lapack/dlasr.c: In function 'dlasr_': ../../../../src/gmxlib/gmx_lapack/dlasr.c:21:17: warning: variable 'info' set but not used [-Wunused-but-set-variable] int i__, j, info; ^~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasdt.lo ../../../../src/gmxlib/gmx_lapack/dlasdt.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasdt.c -fPIC -DPIC -o .libs/dlasdt.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlabrd.lo ../../../../src/gmxlib/gmx_lapack/dlabrd.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlabrd.c -fPIC -DPIC -o .libs/dlabrd.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dbdsqr.lo ../../../../src/gmxlib/gmx_lapack/dbdsqr.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dbdsqr.c -fPIC -DPIC -o .libs/dbdsqr.o ../../../../src/gmxlib/gmx_lapack/dbdsqr.c: In function 'dbdsqr_': ../../../../src/gmxlib/gmx_lapack/dbdsqr.c:61:12: warning: unused variable 'ftmp' [-Wunused-variable] double ftmp; ^~~~ ../../../../src/gmxlib/gmx_lapack/dbdsqr.c:59:12: warning: variable 'sminlo' set but not used [-Wunused-but-set-variable] double sminlo, tolmul; ^~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasrt.lo ../../../../src/gmxlib/gmx_lapack/dlasrt.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasrt.c -fPIC -DPIC -o .libs/dlasrt.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dorgqr.lo ../../../../src/gmxlib/gmx_lapack/dorgqr.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dorgqr.c -fPIC -DPIC -o .libs/dorgqr.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dgebrd.lo ../../../../src/gmxlib/gmx_lapack/dgebrd.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgebrd.c -fPIC -DPIC -o .libs/dgebrd.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasd2.lo ../../../../src/gmxlib/gmx_lapack/dlasd2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasd2.c -fPIC -DPIC -o .libs/dlasd2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlapy2.lo ../../../../src/gmxlib/gmx_lapack/dlapy2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlapy2.c -fPIC -DPIC -o .libs/dlapy2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlacpy.lo ../../../../src/gmxlib/gmx_lapack/dlacpy.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlacpy.c -fPIC -DPIC -o .libs/dlacpy.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dsytrd.lo ../../../../src/gmxlib/gmx_lapack/dsytrd.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dsytrd.c -fPIC -DPIC -o .libs/dsytrd.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlaset.lo ../../../../src/gmxlib/gmx_lapack/dlaset.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlaset.c -fPIC -DPIC -o .libs/dlaset.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlassq.lo ../../../../src/gmxlib/gmx_lapack/dlassq.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlassq.c -fPIC -DPIC -o .libs/dlassq.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dstebz.lo ../../../../src/gmxlib/gmx_lapack/dstebz.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dstebz.c -fPIC -DPIC -o .libs/dstebz.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dorm2l.lo ../../../../src/gmxlib/gmx_lapack/dorm2l.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dorm2l.c -fPIC -DPIC -o .libs/dorm2l.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dgetrs.lo ../../../../src/gmxlib/gmx_lapack/dgetrs.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgetrs.c -fPIC -DPIC -o .libs/dgetrs.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dgelq2.lo ../../../../src/gmxlib/gmx_lapack/dgelq2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgelq2.c -fPIC -DPIC -o .libs/dgelq2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasd3.lo ../../../../src/gmxlib/gmx_lapack/dlasd3.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasd3.c -fPIC -DPIC -o .libs/dlasd3.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlae2.lo ../../../../src/gmxlib/gmx_lapack/dlae2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlae2.c -fPIC -DPIC -o .libs/dlae2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dstegr.lo ../../../../src/gmxlib/gmx_lapack/dstegr.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dstegr.c -fPIC -DPIC -o .libs/dstegr.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasq1.lo ../../../../src/gmxlib/gmx_lapack/dlasq1.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasq1.c -fPIC -DPIC -o .libs/dlasq1.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dtrti2.lo ../../../../src/gmxlib/gmx_lapack/dtrti2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dtrti2.c -fPIC -DPIC -o .libs/dtrti2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dgetri.lo ../../../../src/gmxlib/gmx_lapack/dgetri.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgetri.c -fPIC -DPIC -o .libs/dgetri.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dorm2r.lo ../../../../src/gmxlib/gmx_lapack/dorm2r.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dorm2r.c -fPIC -DPIC -o .libs/dorm2r.o ../../../../src/gmxlib/gmx_lapack/dorm2r.c: In function 'dorm2r_': ../../../../src/gmxlib/gmx_lapack/dorm2r.c:19:42: warning: variable 'nq' set but not used [-Wunused-but-set-variable] int i__, i1, i2, i3, ic, jc, mi, ni, nq; ^~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasv2.lo ../../../../src/gmxlib/gmx_lapack/dlasv2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasv2.c -fPIC -DPIC -o .libs/dlasv2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dgelqf.lo ../../../../src/gmxlib/gmx_lapack/dgelqf.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgelqf.c -fPIC -DPIC -o .libs/dgelqf.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlarf.lo ../../../../src/gmxlib/gmx_lapack/dlarf.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlarf.c -fPIC -DPIC -o .libs/dlarf.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dstein.lo ../../../../src/gmxlib/gmx_lapack/dstein.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dstein.c -fPIC -DPIC -o .libs/dstein.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlartg.lo ../../../../src/gmxlib/gmx_lapack/dlartg.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlartg.c -fPIC -DPIC -o .libs/dlartg.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasd5.lo ../../../../src/gmxlib/gmx_lapack/dlasd5.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasd5.c -fPIC -DPIC -o .libs/dlasd5.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlaebz.lo ../../../../src/gmxlib/gmx_lapack/dlaebz.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlaebz.c -fPIC -DPIC -o .libs/dlaebz.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlaswp.lo ../../../../src/gmxlib/gmx_lapack/dlaswp.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g 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'/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasd4.lo ../../../../src/gmxlib/gmx_lapack/dlasd4.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasd4.c -fPIC -DPIC -o .libs/dlasd4.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dgeqr2.lo ../../../../src/gmxlib/gmx_lapack/dgeqr2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgeqr2.c -fPIC -DPIC -o .libs/dgeqr2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasq2.lo ../../../../src/gmxlib/gmx_lapack/dlasq2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasq2.c -fPIC -DPIC -o .libs/dlasq2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlaruv.lo ../../../../src/gmxlib/gmx_lapack/dlaruv.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlaruv.c -fPIC -DPIC -o .libs/dlaruv.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dsterf.lo ../../../../src/gmxlib/gmx_lapack/dsterf.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dsterf.c -fPIC -DPIC -o .libs/dsterf.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasd6.lo ../../../../src/gmxlib/gmx_lapack/dlasd6.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasd6.c -fPIC -DPIC -o .libs/dlasd6.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlaed6.lo ../../../../src/gmxlib/gmx_lapack/dlaed6.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlaed6.c -fPIC -DPIC -o .libs/dlaed6.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlatrd.lo ../../../../src/gmxlib/gmx_lapack/dlatrd.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlatrd.c -fPIC -DPIC -o .libs/dlatrd.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasq3.lo ../../../../src/gmxlib/gmx_lapack/dlasq3.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasq3.c -fPIC -DPIC -o .libs/dlasq3.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dstevr.lo ../../../../src/gmxlib/gmx_lapack/dstevr.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dstevr.c -fPIC -DPIC -o .libs/dstevr.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dorml2.lo ../../../../src/gmxlib/gmx_lapack/dorml2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dorml2.c -fPIC -DPIC -o .libs/dorml2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlarfb.lo ../../../../src/gmxlib/gmx_lapack/dlarfb.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlarfb.c -fPIC -DPIC -o .libs/dlarfb.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlarfg.lo ../../../../src/gmxlib/gmx_lapack/dlarfg.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlarfg.c -fPIC -DPIC -o .libs/dlarfg.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dgeqrf.lo ../../../../src/gmxlib/gmx_lapack/dgeqrf.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgeqrf.c -fPIC -DPIC -o .libs/dgeqrf.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlagtf.lo ../../../../src/gmxlib/gmx_lapack/dlagtf.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlagtf.c -fPIC -DPIC -o .libs/dlagtf.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlas2.lo ../../../../src/gmxlib/gmx_lapack/dlas2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlas2.c -fPIC -DPIC -o .libs/dlas2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dorg2r.lo ../../../../src/gmxlib/gmx_lapack/dorg2r.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dorg2r.c -fPIC -DPIC -o .libs/dorg2r.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dormlq.lo ../../../../src/gmxlib/gmx_lapack/dormlq.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dormlq.c -fPIC -DPIC -o .libs/dormlq.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dsytd2.lo ../../../../src/gmxlib/gmx_lapack/dsytd2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dsytd2.c -fPIC -DPIC -o .libs/dsytd2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasq4.lo ../../../../src/gmxlib/gmx_lapack/dlasq4.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasq4.c -fPIC -DPIC -o .libs/dlasq4.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasd7.lo ../../../../src/gmxlib/gmx_lapack/dlasd7.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasd7.c -fPIC -DPIC -o .libs/dlasd7.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlagts.lo ../../../../src/gmxlib/gmx_lapack/dlagts.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlagts.c -fPIC -DPIC -o .libs/dlagts.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dgesdd.lo ../../../../src/gmxlib/gmx_lapack/dgesdd.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgesdd.c -fPIC -DPIC -o .libs/dgesdd.o ../../../../src/gmxlib/gmx_lapack/dgesdd.c: In function 'dgesdd_': ../../../../src/gmxlib/gmx_lapack/dgesdd.c:40:9: warning: variable 'wntqas' set but not used [-Wunused-but-set-variable] int wntqas, lquery; ^~~~~~ ../../../../src/gmxlib/gmx_lapack/dgesdd.c:38:9: warning: variable 'minwrk' set but not used [-Wunused-but-set-variable] int minwrk, ldwrku, maxwrk, ldwkvt; ^~~~~~ ../../../../src/gmxlib/gmx_lapack/dgesdd.c:35:16: warning: variable 'wntqo' set but not used [-Wunused-but-set-variable] int wntqn, wntqo, wntqs; ^~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlarft.lo ../../../../src/gmxlib/gmx_lapack/dlarft.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlarft.c -fPIC -DPIC -o .libs/dlarft.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlascl.lo ../../../../src/gmxlib/gmx_lapack/dlascl.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlascl.c -fPIC -DPIC -o .libs/dlascl.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dormql.lo ../../../../src/gmxlib/gmx_lapack/dormql.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dormql.c -fPIC -DPIC -o .libs/dormql.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasd8.lo ../../../../src/gmxlib/gmx_lapack/dlasd8.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasd8.c -fPIC -DPIC -o .libs/dlasd8.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dorgbr.lo ../../../../src/gmxlib/gmx_lapack/dorgbr.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dorgbr.c -fPIC -DPIC -o .libs/dorgbr.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlaev2.lo ../../../../src/gmxlib/gmx_lapack/dlaev2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlaev2.c -fPIC -DPIC -o .libs/dlaev2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasq5.lo ../../../../src/gmxlib/gmx_lapack/dlasq5.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasq5.c -fPIC -DPIC -o .libs/dlasq5.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasrt2.lo ../../../../src/gmxlib/gmx_lapack/dlasrt2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasrt2.c -fPIC -DPIC -o .libs/dlasrt2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dsyevr.lo ../../../../src/gmxlib/gmx_lapack/dsyevr.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dsyevr.c -fPIC -DPIC -o .libs/dsyevr.o ../../../../src/gmxlib/gmx_lapack/dsyevr.c: In function 'dsyevr_': ../../../../src/gmxlib/gmx_lapack/dsyevr.c:36:12: warning: variable 'abstll' set but not used [-Wunused-but-set-variable] double abstll, bignum; ^~~~~~ ../../../../src/gmxlib/gmx_lapack/dsyevr.c:33:17: warning: variable 'ieeeok' set but not used [-Wunused-but-set-variable] int iscale, ieeeok, indibl, indifl; ^~~~~~ ../../../../src/gmxlib/gmx_lapack/dsyevr.c:21:22: warning: variable 'vuu' set but not used [-Wunused-but-set-variable] double eps, vll, vuu, tmp1; ^~~ ../../../../src/gmxlib/gmx_lapack/dsyevr.c:21:17: warning: variable 'vll' set but not used [-Wunused-but-set-variable] double eps, vll, vuu, tmp1; ^~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlansy.lo ../../../../src/gmxlib/gmx_lapack/dlansy.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlansy.c -fPIC -DPIC -o .libs/dlansy.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlarrfx.lo ../../../../src/gmxlib/gmx_lapack/dlarrfx.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlarrfx.c -fPIC -DPIC -o .libs/dlarrfx.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dsteqr.lo ../../../../src/gmxlib/gmx_lapack/dsteqr.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dsteqr.c -fPIC -DPIC -o .libs/dsteqr.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlar1vx.lo ../../../../src/gmxlib/gmx_lapack/dlar1vx.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlar1vx.c -fPIC -DPIC -o .libs/dlar1vx.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlarrbx.lo ../../../../src/gmxlib/gmx_lapack/dlarrbx.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlarrbx.c -fPIC -DPIC -o .libs/dlarrbx.o ../../../../src/gmxlib/gmx_lapack/dlarrbx.c: In function 'dlarrbx_': ../../../../src/gmxlib/gmx_lapack/dlarrbx.c:36:33: warning: variable 'error' set but not used [-Wunused-but-set-variable] double right, width, dplus, error; ^~~~~ ../../../../src/gmxlib/gmx_lapack/dlarrbx.c:34:12: warning: variable 'eps' set but not used [-Wunused-but-set-variable] double eps, tmp, left; ^~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slamrg.lo ../../../../src/gmxlib/gmx_lapack/slamrg.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slamrg.c -fPIC -DPIC -o .libs/slamrg.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sgetf2.lo ../../../../src/gmxlib/gmx_lapack/sgetf2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgetf2.c -fPIC -DPIC -o .libs/sgetf2.o ../../../../src/gmxlib/gmx_lapack/sgetf2.c: In function 'sgetf2_': ../../../../src/gmxlib/gmx_lapack/sgetf2.c:17:9: warning: variable 'one' set but not used [-Wunused-but-set-variable] float one,minusone; ^~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slarnv.lo ../../../../src/gmxlib/gmx_lapack/slarnv.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarnv.c -fPIC -DPIC -o .libs/slarnv.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sbdsdc.lo ../../../../src/gmxlib/gmx_lapack/sbdsdc.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sbdsdc.c -fPIC -DPIC -o .libs/sbdsdc.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlarrex.lo ../../../../src/gmxlib/gmx_lapack/dlarrex.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlarrex.c -fPIC -DPIC -o .libs/dlarrex.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasd0.lo ../../../../src/gmxlib/gmx_lapack/slasd0.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasd0.c -fPIC -DPIC -o .libs/slasd0.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlarrvx.lo ../../../../src/gmxlib/gmx_lapack/dlarrvx.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlarrvx.c -fPIC -DPIC -o .libs/dlarrvx.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasq6.lo ../../../../src/gmxlib/gmx_lapack/slasq6.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasq6.c -fPIC -DPIC -o .libs/slasq6.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasda.lo ../../../../src/gmxlib/gmx_lapack/slasda.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasda.c -fPIC -DPIC -o .libs/slasda.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sorgl2.lo ../../../../src/gmxlib/gmx_lapack/sorgl2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sorgl2.c -fPIC -DPIC -o .libs/sorgl2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sormqr.lo ../../../../src/gmxlib/gmx_lapack/sormqr.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sormqr.c -fPIC -DPIC -o .libs/sormqr.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sgetrf.lo ../../../../src/gmxlib/gmx_lapack/sgetrf.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgetrf.c -fPIC -DPIC -o .libs/sgetrf.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slange.lo ../../../../src/gmxlib/gmx_lapack/slange.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slange.c -fPIC -DPIC -o .libs/slange.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasd1.lo ../../../../src/gmxlib/gmx_lapack/slasd1.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasd1.c -fPIC -DPIC -o .libs/slasd1.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ssytrd.lo ../../../../src/gmxlib/gmx_lapack/ssytrd.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/ssytrd.c -fPIC -DPIC -o .libs/ssytrd.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasdq.lo ../../../../src/gmxlib/gmx_lapack/slasdq.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasdq.c -fPIC -DPIC -o .libs/slasdq.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sormtr.lo ../../../../src/gmxlib/gmx_lapack/sormtr.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sormtr.c -fPIC -DPIC -o .libs/sormtr.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sorglq.lo ../../../../src/gmxlib/gmx_lapack/sorglq.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sorglq.c -fPIC -DPIC -o .libs/sorglq.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sgebd2.lo ../../../../src/gmxlib/gmx_lapack/sgebd2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgebd2.c -fPIC -DPIC -o .libs/sgebd2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasr.lo ../../../../src/gmxlib/gmx_lapack/slasr.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasr.c -fPIC -DPIC -o .libs/slasr.o ../../../../src/gmxlib/gmx_lapack/slasr.c: In function 'slasr_': ../../../../src/gmxlib/gmx_lapack/slasr.c:21:17: warning: variable 'info' set but not used [-Wunused-but-set-variable] int i__, j, info; ^~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slanst.lo ../../../../src/gmxlib/gmx_lapack/slanst.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slanst.c -fPIC -DPIC -o .libs/slanst.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasdt.lo ../../../../src/gmxlib/gmx_lapack/slasdt.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasdt.c -fPIC -DPIC -o .libs/slasdt.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sbdsqr.lo ../../../../src/gmxlib/gmx_lapack/sbdsqr.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sbdsqr.c -fPIC -DPIC -o .libs/sbdsqr.o ../../../../src/gmxlib/gmx_lapack/sbdsqr.c: In function 'sbdsqr_': ../../../../src/gmxlib/gmx_lapack/sbdsqr.c:61:11: warning: unused variable 'ftmp' [-Wunused-variable] float ftmp; ^~~~ ../../../../src/gmxlib/gmx_lapack/sbdsqr.c:59:11: warning: variable 'sminlo' set but not used [-Wunused-but-set-variable] float sminlo, tolmul; ^~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasrt.lo ../../../../src/gmxlib/gmx_lapack/slasrt.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasrt.c -fPIC -DPIC -o .libs/slasrt.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slabrd.lo ../../../../src/gmxlib/gmx_lapack/slabrd.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slabrd.c -fPIC -DPIC -o .libs/slabrd.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sorgqr.lo ../../../../src/gmxlib/gmx_lapack/sorgqr.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sorgqr.c -fPIC -DPIC -o .libs/sorgqr.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sgebrd.lo ../../../../src/gmxlib/gmx_lapack/sgebrd.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgebrd.c -fPIC -DPIC -o .libs/sgebrd.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasd2.lo ../../../../src/gmxlib/gmx_lapack/slasd2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasd2.c -fPIC -DPIC -o .libs/slasd2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sgetrs.lo ../../../../src/gmxlib/gmx_lapack/sgetrs.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgetrs.c -fPIC -DPIC -o .libs/sgetrs.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slacpy.lo ../../../../src/gmxlib/gmx_lapack/slacpy.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slacpy.c -fPIC -DPIC -o .libs/slacpy.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slapy2.lo ../../../../src/gmxlib/gmx_lapack/slapy2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slapy2.c -fPIC -DPIC -o .libs/slapy2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slaset.lo ../../../../src/gmxlib/gmx_lapack/slaset.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slaset.c -fPIC -DPIC -o .libs/slaset.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sstebz.lo ../../../../src/gmxlib/gmx_lapack/sstebz.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sstebz.c -fPIC -DPIC -o .libs/sstebz.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slassq.lo ../../../../src/gmxlib/gmx_lapack/slassq.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slassq.c -fPIC -DPIC -o .libs/slassq.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sorm2l.lo ../../../../src/gmxlib/gmx_lapack/sorm2l.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sorm2l.c -fPIC -DPIC -o .libs/sorm2l.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sgetri.lo ../../../../src/gmxlib/gmx_lapack/sgetri.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgetri.c -fPIC -DPIC -o .libs/sgetri.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sgelq2.lo ../../../../src/gmxlib/gmx_lapack/sgelq2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgelq2.c -fPIC -DPIC -o .libs/sgelq2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasd3.lo ../../../../src/gmxlib/gmx_lapack/slasd3.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasd3.c -fPIC -DPIC -o .libs/slasd3.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sstegr.lo ../../../../src/gmxlib/gmx_lapack/sstegr.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sstegr.c -fPIC -DPIC -o .libs/sstegr.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slae2.lo ../../../../src/gmxlib/gmx_lapack/slae2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slae2.c -fPIC -DPIC -o .libs/slae2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasq1.lo ../../../../src/gmxlib/gmx_lapack/slasq1.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c 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../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o strtri.lo ../../../../src/gmxlib/gmx_lapack/strtri.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/strtri.c -fPIC -DPIC -o .libs/strtri.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sorm2r.lo ../../../../src/gmxlib/gmx_lapack/sorm2r.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sorm2r.c -fPIC -DPIC -o .libs/sorm2r.o ../../../../src/gmxlib/gmx_lapack/sorm2r.c: In function 'sorm2r_': ../../../../src/gmxlib/gmx_lapack/sorm2r.c:19:42: warning: variable 'nq' set but not used [-Wunused-but-set-variable] int i__, i1, i2, i3, ic, jc, mi, ni, nq; ^~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasv2.lo ../../../../src/gmxlib/gmx_lapack/slasv2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasv2.c -fPIC -DPIC -o .libs/slasv2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sgelqf.lo ../../../../src/gmxlib/gmx_lapack/sgelqf.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgelqf.c -fPIC -DPIC -o .libs/sgelqf.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slarf.lo ../../../../src/gmxlib/gmx_lapack/slarf.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarf.c -fPIC -DPIC -o .libs/slarf.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sstein.lo ../../../../src/gmxlib/gmx_lapack/sstein.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sstein.c -fPIC -DPIC -o .libs/sstein.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slartg.lo ../../../../src/gmxlib/gmx_lapack/slartg.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g 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'/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slaswp.lo ../../../../src/gmxlib/gmx_lapack/slaswp.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slaswp.c -fPIC -DPIC -o .libs/slaswp.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slaebz.lo ../../../../src/gmxlib/gmx_lapack/slaebz.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slaebz.c -fPIC -DPIC -o .libs/slaebz.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sormbr.lo ../../../../src/gmxlib/gmx_lapack/sormbr.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sormbr.c -fPIC -DPIC -o .libs/sormbr.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sgeqr2.lo ../../../../src/gmxlib/gmx_lapack/sgeqr2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgeqr2.c -fPIC -DPIC -o .libs/sgeqr2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasd4.lo ../../../../src/gmxlib/gmx_lapack/slasd4.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasd4.c -fPIC -DPIC -o .libs/slasd4.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasq2.lo ../../../../src/gmxlib/gmx_lapack/slasq2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasq2.c -fPIC -DPIC -o .libs/slasq2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slaed6.lo ../../../../src/gmxlib/gmx_lapack/slaed6.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slaed6.c -fPIC -DPIC -o .libs/slaed6.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slaruv.lo ../../../../src/gmxlib/gmx_lapack/slaruv.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slaruv.c -fPIC -DPIC -o .libs/slaruv.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ssterf.lo ../../../../src/gmxlib/gmx_lapack/ssterf.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/ssterf.c -fPIC -DPIC -o .libs/ssterf.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasd6.lo ../../../../src/gmxlib/gmx_lapack/slasd6.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasd6.c -fPIC -DPIC -o .libs/slasd6.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sstevr.lo ../../../../src/gmxlib/gmx_lapack/sstevr.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sstevr.c -fPIC -DPIC -o .libs/sstevr.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sorml2.lo ../../../../src/gmxlib/gmx_lapack/sorml2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sorml2.c -fPIC -DPIC -o .libs/sorml2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slarfb.lo ../../../../src/gmxlib/gmx_lapack/slarfb.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarfb.c -fPIC -DPIC -o .libs/slarfb.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sgeqrf.lo ../../../../src/gmxlib/gmx_lapack/sgeqrf.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c 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../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slatrd.lo ../../../../src/gmxlib/gmx_lapack/slatrd.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slatrd.c -fPIC -DPIC -o .libs/slatrd.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slagtf.lo ../../../../src/gmxlib/gmx_lapack/slagtf.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slagtf.c -fPIC -DPIC -o .libs/slagtf.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slarfg.lo ../../../../src/gmxlib/gmx_lapack/slarfg.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarfg.c -fPIC -DPIC -o .libs/slarfg.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slas2.lo ../../../../src/gmxlib/gmx_lapack/slas2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slas2.c -fPIC -DPIC -o .libs/slas2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sorg2r.lo ../../../../src/gmxlib/gmx_lapack/sorg2r.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sorg2r.c -fPIC -DPIC -o .libs/sorg2r.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sormlq.lo ../../../../src/gmxlib/gmx_lapack/sormlq.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g 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'/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasd7.lo ../../../../src/gmxlib/gmx_lapack/slasd7.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasd7.c -fPIC -DPIC -o .libs/slasd7.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slagts.lo ../../../../src/gmxlib/gmx_lapack/slagts.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slagts.c -fPIC -DPIC -o .libs/slagts.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasq4.lo ../../../../src/gmxlib/gmx_lapack/slasq4.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasq4.c -fPIC -DPIC -o .libs/slasq4.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sgesdd.lo ../../../../src/gmxlib/gmx_lapack/sgesdd.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgesdd.c -fPIC -DPIC -o .libs/sgesdd.o ../../../../src/gmxlib/gmx_lapack/sgesdd.c: In function 'sgesdd_': ../../../../src/gmxlib/gmx_lapack/sgesdd.c:40:9: warning: variable 'wntqas' set but not used [-Wunused-but-set-variable] int wntqas, lquery; ^~~~~~ ../../../../src/gmxlib/gmx_lapack/sgesdd.c:38:9: warning: variable 'minwrk' set but not used [-Wunused-but-set-variable] int minwrk, ldwrku, maxwrk, ldwkvt; ^~~~~~ ../../../../src/gmxlib/gmx_lapack/sgesdd.c:35:16: warning: variable 'wntqo' set but not used [-Wunused-but-set-variable] int wntqn, wntqo, wntqs; ^~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slarft.lo ../../../../src/gmxlib/gmx_lapack/slarft.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarft.c -fPIC -DPIC -o .libs/slarft.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slascl.lo ../../../../src/gmxlib/gmx_lapack/slascl.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slascl.c -fPIC -DPIC -o .libs/slascl.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasd8.lo ../../../../src/gmxlib/gmx_lapack/slasd8.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasd8.c -fPIC -DPIC -o .libs/slasd8.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasq5.lo ../../../../src/gmxlib/gmx_lapack/slasq5.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasq5.c -fPIC -DPIC -o .libs/slasq5.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sormql.lo ../../../../src/gmxlib/gmx_lapack/sormql.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sormql.c -fPIC -DPIC -o .libs/sormql.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sorgbr.lo ../../../../src/gmxlib/gmx_lapack/sorgbr.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sorgbr.c -fPIC -DPIC -o .libs/sorgbr.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slaev2.lo ../../../../src/gmxlib/gmx_lapack/slaev2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slaev2.c -fPIC -DPIC -o .libs/slaev2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasrt2.lo ../../../../src/gmxlib/gmx_lapack/slasrt2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasrt2.c -fPIC -DPIC -o .libs/slasrt2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ssyevr.lo ../../../../src/gmxlib/gmx_lapack/ssyevr.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/ssyevr.c -fPIC -DPIC -o .libs/ssyevr.o ../../../../src/gmxlib/gmx_lapack/ssyevr.c: In function 'ssyevr_': ../../../../src/gmxlib/gmx_lapack/ssyevr.c:36:11: warning: variable 'abstll' set but not used [-Wunused-but-set-variable] float abstll, bignum; ^~~~~~ ../../../../src/gmxlib/gmx_lapack/ssyevr.c:33:17: warning: variable 'ieeeok' set but not used [-Wunused-but-set-variable] int iscale, ieeeok, indibl, indifl; ^~~~~~ ../../../../src/gmxlib/gmx_lapack/ssyevr.c:21:21: warning: variable 'vuu' set but not used [-Wunused-but-set-variable] float eps, vll, vuu, tmp1; ^~~ ../../../../src/gmxlib/gmx_lapack/ssyevr.c:21:16: warning: variable 'vll' set but not used [-Wunused-but-set-variable] float eps, vll, vuu, tmp1; ^~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slansy.lo ../../../../src/gmxlib/gmx_lapack/slansy.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slansy.c -fPIC -DPIC -o .libs/slansy.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slarrfx.lo ../../../../src/gmxlib/gmx_lapack/slarrfx.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarrfx.c -fPIC -DPIC -o .libs/slarrfx.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ssteqr.lo ../../../../src/gmxlib/gmx_lapack/ssteqr.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/ssteqr.c -fPIC -DPIC -o .libs/ssteqr.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slar1vx.lo ../../../../src/gmxlib/gmx_lapack/slar1vx.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slar1vx.c -fPIC -DPIC -o .libs/slar1vx.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slarrbx.lo ../../../../src/gmxlib/gmx_lapack/slarrbx.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarrbx.c -fPIC -DPIC -o .libs/slarrbx.o ../../../../src/gmxlib/gmx_lapack/slarrbx.c: In function 'slarrbx_': ../../../../src/gmxlib/gmx_lapack/slarrbx.c:36:32: warning: variable 'error' set but not used [-Wunused-but-set-variable] float right, width, dplus, error; ^~~~~ ../../../../src/gmxlib/gmx_lapack/slarrbx.c:34:11: warning: variable 'eps' set but not used [-Wunused-but-set-variable] float eps, tmp, left; ^~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ilasrt2.lo ../../../../src/gmxlib/gmx_lapack/ilasrt2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/ilasrt2.c -fPIC -DPIC -o .libs/ilasrt2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slarrex.lo ../../../../src/gmxlib/gmx_lapack/slarrex.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarrex.c -fPIC -DPIC -o .libs/slarrex.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slarrvx.lo ../../../../src/gmxlib/gmx_lapack/slarrvx.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarrvx.c -fPIC -DPIC -o .libs/slarrvx.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o liblapack.la dbdsdc.lo dgetf2.lo dlamrg.lo dlarnv.lo dlasd0.lo dlasda.lo dlasq6.lo dorgl2.lo dormqr.lo dbdsqr.lo dgetrf.lo dlange.lo dlasd1.lo dtrtri.lo dlasdq.lo dlasr.lo dorglq.lo dormtr.lo dgebd2.lo dlabrd.lo dlanst.lo dlasd2.lo dlasdt.lo dlasrt.lo dorgqr.lo dstebz.lo dgebrd.lo dsytrd.lo dlacpy.lo dlapy2.lo dlasd3.lo dlaset.lo dlassq.lo dorm2l.lo dgetrs.lo dstegr.lo dgelq2.lo dlae2.lo dlasd4.lo dlasq1.lo dtrti2.lo dgetri.lo dlasv2.lo dorm2r.lo dstein.lo dgelqf.lo dlaebz.lo dlarf.lo dlartg.lo dlasd5.lo dlasq2.lo dlaswp.lo dormbr.lo dsterf.lo dgeqr2.lo dlaed6.lo dlarfb.lo dlaruv.lo dlasd6.lo dlasq3.lo dlatrd.lo dorml2.lo dstevr.lo dgeqrf.lo dlagtf.lo dlarfg.lo dlas2.lo dlasd7.lo dlasq4.lo dorg2r.lo dormlq.lo dsytd2.lo dgesdd.lo dlagts.lo dlarft.lo dlascl.lo dlasd8.lo dlasq5.lo dorgbr.lo dormql.lo dlaev2.lo dsteqr.lo dsyevr.lo dlasrt2.lo dlansy.lo dlar1vx.lo dlarrbx.lo dlarrex.lo dlarrfx.lo dlarrvx.lo sbdsdc.lo sgetf2.lo slamrg.lo slarnv.lo slasd0.lo slasda.lo slasq6.lo sorgl2.lo sormqr.lo sbdsqr.lo sgetrf.lo slange.lo slasd1.lo ssytrd.lo slasdq.lo slasr.lo sorglq.lo sormtr.lo sgebd2.lo slabrd.lo slanst.lo slasd2.lo slasdt.lo slasrt.lo sorgqr.lo sstebz.lo sgebrd.lo sgetrs.lo slacpy.lo slapy2.lo slasd3.lo slaset.lo slassq.lo sorm2l.lo sgetri.lo sstegr.lo sgelq2.lo slae2.lo slasd4.lo slasq1.lo strti2.lo strtri.lo slasv2.lo sorm2r.lo sstein.lo sgelqf.lo slaebz.lo slarf.lo slartg.lo slasd5.lo slasq2.lo slaswp.lo sormbr.lo ssterf.lo sgeqr2.lo slaed6.lo slarfb.lo slaruv.lo slasd6.lo slasq3.lo slatrd.lo sorml2.lo sstevr.lo sgeqrf.lo slagtf.lo slarfg.lo slas2.lo slasd7.lo slasq4.lo sorg2r.lo sormlq.lo ssytd2.lo sgesdd.lo slagts.lo slarft.lo slascl.lo slasd8.lo slasq5.lo sorgbr.lo sormql.lo slaev2.lo ssteqr.lo ssyevr.lo slasrt2.lo slansy.lo slar1vx.lo slarrbx.lo slarrex.lo slarrfx.lo slarrvx.lo ilasrt2.lo -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath ar cru .libs/liblapack.a .libs/dbdsdc.o .libs/dgetf2.o .libs/dlamrg.o .libs/dlarnv.o .libs/dlasd0.o .libs/dlasda.o .libs/dlasq6.o .libs/dorgl2.o .libs/dormqr.o .libs/dbdsqr.o .libs/dgetrf.o .libs/dlange.o .libs/dlasd1.o .libs/dtrtri.o .libs/dlasdq.o .libs/dlasr.o .libs/dorglq.o .libs/dormtr.o .libs/dgebd2.o .libs/dlabrd.o .libs/dlanst.o .libs/dlasd2.o .libs/dlasdt.o .libs/dlasrt.o .libs/dorgqr.o .libs/dstebz.o .libs/dgebrd.o .libs/dsytrd.o .libs/dlacpy.o .libs/dlapy2.o .libs/dlasd3.o .libs/dlaset.o .libs/dlassq.o .libs/dorm2l.o .libs/dgetrs.o .libs/dstegr.o .libs/dgelq2.o .libs/dlae2.o .libs/dlasd4.o .libs/dlasq1.o .libs/dtrti2.o .libs/dgetri.o .libs/dlasv2.o .libs/dorm2r.o .libs/dstein.o .libs/dgelqf.o .libs/dlaebz.o .libs/dlarf.o .libs/dlartg.o .libs/dlasd5.o .libs/dlasq2.o .libs/dlaswp.o .libs/dormbr.o .libs/dsterf.o .libs/dgeqr2.o .libs/dlaed6.o .libs/dlarfb.o .libs/dlaruv.o .libs/dlasd6.o .libs/dlasq3.o .libs/dlatrd.o .libs/dorml2.o .libs/dstevr.o .libs/dgeqrf.o .libs/dlagtf.o .libs/dlarfg.o .libs/dlas2.o .libs/dlasd7.o .libs/dlasq4.o .libs/dorg2r.o .libs/dormlq.o .libs/dsytd2.o .libs/dgesdd.o .libs/dlagts.o .libs/dlarft.o .libs/dlascl.o .libs/dlasd8.o .libs/dlasq5.o .libs/dorgbr.o .libs/dormql.o .libs/dlaev2.o .libs/dsteqr.o .libs/dsyevr.o .libs/dlasrt2.o .libs/dlansy.o .libs/dlar1vx.o .libs/dlarrbx.o .libs/dlarrex.o .libs/dlarrfx.o .libs/dlarrvx.o .libs/sbdsdc.o .libs/sgetf2.o .libs/slamrg.o .libs/slarnv.o .libs/slasd0.o .libs/slasda.o .libs/slasq6.o .libs/sorgl2.o .libs/sormqr.o .libs/sbdsqr.o .libs/sgetrf.o .libs/slange.o .libs/slasd1.o .libs/ssytrd.o .libs/slasdq.o .libs/slasr.o .libs/sorglq.o .libs/sormtr.o .libs/sgebd2.o .libs/slabrd.o .libs/slanst.o .libs/slasd2.o .libs/slasdt.o .libs/slasrt.o .libs/sorgqr.o .libs/sstebz.o .libs/sgebrd.o .libs/sgetrs.o .libs/slacpy.o .libs/slapy2.o .libs/slasd3.o .libs/slaset.o .libs/slassq.o .libs/sorm2l.o .libs/sgetri.o .libs/sstegr.o .libs/sgelq2.o .libs/slae2.o .libs/slasd4.o .libs/slasq1.o .libs/strti2.o .libs/strtri.o .libs/slasv2.o .libs/sorm2r.o .libs/sstein.o .libs/sgelqf.o .libs/slaebz.o .libs/slarf.o .libs/slartg.o .libs/slasd5.o .libs/slasq2.o .libs/slaswp.o .libs/sormbr.o .libs/ssterf.o .libs/sgeqr2.o .libs/slaed6.o .libs/slarfb.o .libs/slaruv.o .libs/slasd6.o .libs/slasq3.o .libs/slatrd.o .libs/sorml2.o .libs/sstevr.o .libs/sgeqrf.o .libs/slagtf.o .libs/slarfg.o .libs/slas2.o .libs/slasd7.o .libs/slasq4.o .libs/sorg2r.o .libs/sormlq.o .libs/ssytd2.o .libs/sgesdd.o .libs/slagts.o .libs/slarft.o .libs/slascl.o .libs/slasd8.o .libs/slasq5.o .libs/sorgbr.o .libs/sormql.o .libs/slaev2.o .libs/ssteqr.o .libs/ssyevr.o .libs/slasrt2.o .libs/slansy.o .libs/slar1vx.o .libs/slarrbx.o .libs/slarrex.o .libs/slarrfx.o .libs/slarrvx.o .libs/ilasrt2.o ranlib .libs/liblapack.a creating liblapack.la (cd .libs && rm -f liblapack.la && ln -s ../liblapack.la liblapack.la) make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o calcgrid.lo ../../../src/gmxlib/calcgrid.c mkdir .libs mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/calcgrid.c -fPIC -DPIC -o .libs/calcgrid.o ../../../src/gmxlib/calcgrid.c: In function 'calc_grid': ../../../src/gmxlib/calcgrid.c:89:8: warning: unused variable 'tmp' [-Wunused-variable] real tmp[3]; ^~~ ../../../src/gmxlib/calcgrid.c:86:10: warning: unused variable 'j' [-Wunused-variable] int i,j,nmin[DIM]; ^ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o copyrite.lo ../../../src/gmxlib/copyrite.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/copyrite.c -fPIC -DPIC -o .libs/copyrite.o ../../../src/gmxlib/copyrite.c: In function 'cool_quote': ../../../src/gmxlib/copyrite.c:181:9: warning: unused variable 's' [-Wunused-variable] char *s,*ptr; ^ ../../../src/gmxlib/copyrite.c: In function 'please_cite': ../../../src/gmxlib/copyrite.c:469:8: warning: unused variable 'j' [-Wunused-variable] int j,index; ^ In file included from ../../../include/statutil.h:51, from ../../../src/gmxlib/copyrite.c:53: At top level: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o calch.lo ../../../src/gmxlib/calch.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/calch.c -fPIC -DPIC -o .libs/calch.o ../../../src/gmxlib/calch.c: In function 'gen_waterhydrogen': ../../../src/gmxlib/calch.c:81:14: warning: unused variable 'kkk' [-Wunused-variable] rvec kkk; ^~~ In file included from ../../../src/gmxlib/calch.c:43: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../src/gmxlib/calch.c:42: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o atomprop.lo ../../../src/gmxlib/atomprop.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/atomprop.c -fPIC -DPIC -o .libs/atomprop.o In file included from ../../../src/gmxlib/atomprop.c:52: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/gmxlib/atomprop.c:45: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o 3dview.lo ../../../src/gmxlib/3dview.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/3dview.c -fPIC -DPIC -o .libs/3dview.o ../../../src/gmxlib/3dview.c: In function 'reset_view': ../../../src/gmxlib/3dview.c:282:8: warning: unused variable 'i' [-Wunused-variable] int i; ^ In file included from ../../../src/gmxlib/3dview.c:47: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/gmxlib/3dview.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o do_fit.lo ../../../src/gmxlib/do_fit.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/do_fit.c -fPIC -DPIC -o .libs/do_fit.o ../../../src/gmxlib/do_fit.c: In function 'calc_fit_R': ../../../src/gmxlib/do_fit.c:103:18: warning: unused variable 'm' [-Wunused-variable] int c,r,n,j,m,i,irot,s; ^ ../../../src/gmxlib/do_fit.c: In function 'do_fit_ndim': ../../../src/gmxlib/do_fit.c:214:10: warning: unused variable 'i' [-Wunused-variable] int i,j,m,r,c; ^ In file included from ../../../src/gmxlib/do_fit.c:44: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../src/gmxlib/do_fit.c:40: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o disre.lo ../../../src/gmxlib/disre.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/disre.c -fPIC -DPIC -o .libs/disre.o ../../../src/gmxlib/disre.c: In function 'init_disres': ../../../src/gmxlib/disre.c:62:19: warning: variable 'ip' set but not used [-Wunused-but-set-variable] t_iparams *ip; ^~ ../../../src/gmxlib/disre.c:61:26: warning: unused variable 'i' [-Wunused-variable] int fa,nmol,i,npair,np; ^ ../../../src/gmxlib/disre.c: In function 'calc_disres_R_6': ../../../src/gmxlib/disre.c:217:23: warning: unused variable 'dt' [-Wunused-variable] ivec it,jt,dt; ^~ ../../../src/gmxlib/disre.c:217:20: warning: unused variable 'jt' [-Wunused-variable] ivec it,jt,dt; ^~ ../../../src/gmxlib/disre.c:217:17: warning: unused variable 'it' [-Wunused-variable] ivec it,jt,dt; ^~ ../../../src/gmxlib/disre.c:212:37: warning: unused variable 'm' [-Wunused-variable] int fa,res,i,pair,ki,kj,m; ^ ../../../src/gmxlib/disre.c:212:34: warning: unused variable 'kj' [-Wunused-variable] int fa,res,i,pair,ki,kj,m; ^~ ../../../src/gmxlib/disre.c:212:31: warning: unused variable 'ki' [-Wunused-variable] int fa,res,i,pair,ki,kj,m; ^~ ../../../src/gmxlib/disre.c:212:24: warning: unused variable 'i' [-Wunused-variable] int fa,res,i,pair,ki,kj,m; ^ ../../../src/gmxlib/disre.c: In function 'ta_disres': ../../../src/gmxlib/disre.c:338:20: warning: unused variable 'jt' [-Wunused-variable] ivec it,jt,dt; ^~ ../../../src/gmxlib/disre.c:338:17: warning: unused variable 'it' [-Wunused-variable] ivec it,jt,dt; ^~ In file included from ../../../src/gmxlib/disre.c:52: At top level: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/gmxlib/disre.c:47: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/gmxlib/disre.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o checkpoint.lo ../../../src/gmxlib/checkpoint.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/checkpoint.c -fPIC -DPIC -o .libs/checkpoint.o ../../../src/gmxlib/checkpoint.c: In function 'do_cpte_ints': ../../../src/gmxlib/checkpoint.c:305:16: warning: unused variable 'i' [-Wunused-variable] int nf,dt,i; ^ ../../../src/gmxlib/checkpoint.c: In function 'do_cpte_doubles': ../../../src/gmxlib/checkpoint.c:371:16: warning: unused variable 'i' [-Wunused-variable] int nf,dt,i; ^ ../../../src/gmxlib/checkpoint.c: In function 'do_cpt_header': ../../../src/gmxlib/checkpoint.c:534:10: warning: unused variable 'i' [-Wunused-variable] int i; ^ ../../../src/gmxlib/checkpoint.c: In function 'write_checkpoint': ../../../src/gmxlib/checkpoint.c:837:30: warning: unused variable 'i' [-Wunused-variable] int flags_eks,flags_enh,i; ^ ../../../src/gmxlib/checkpoint.c:833:29: warning: unused variable 'flag_64bit' [-Wunused-variable] int nppnodes,npmenodes,flag_64bit; ^~~~~~~~~~ ../../../src/gmxlib/checkpoint.c: In function 'read_checkpoint': ../../../src/gmxlib/checkpoint.c:1254:40: warning: left-hand operand of comma expression has no effect [-Wunused-value] if (outputfiles[i].filename,outputfiles[i].offset < 0) ^ ../../../src/gmxlib/checkpoint.c:1036:7: warning: unused variable 'filename' [-Wunused-variable] char filename[STRLEN]; ^~~~~~~~ ../../../src/gmxlib/checkpoint.c:1033:15: warning: unused variable 'j' [-Wunused-variable] int fp,i,j; ^ ../../../src/gmxlib/checkpoint.c: In function 'list_checkpoint': ../../../src/gmxlib/checkpoint.c:1421:12: warning: unused variable 'j' [-Wunused-variable] int i,j; ^ ../../../src/gmxlib/checkpoint.c:1421:10: warning: unused variable 'i' [-Wunused-variable] int i,j; ^ ../../../src/gmxlib/checkpoint.c:1420:10: warning: unused variable 'indent' [-Wunused-variable] int indent; ^~~~~~ In file included from ../../../src/gmxlib/checkpoint.c:34: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/gmxlib/checkpoint.c:34: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/gmxlib/checkpoint.c:32: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_fatal.lo ../../../src/gmxlib/gmx_fatal.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/gmx_fatal.c -fPIC -DPIC -o .libs/gmx_fatal.o ../../../src/gmxlib/gmx_fatal.c:226:13: warning: 'fatal_error' defined but not used [-Wunused-function] static void fatal_error(int f_errno,const char *fmt,...) ^~~~~~~~~~~ ../../../src/gmxlib/gmx_fatal.c:115:13: warning: 'bputi' defined but not used [-Wunused-function] static void bputi(char *msg,int *len,int val,int radix,int fld,bool bNeg) ^~~~~ In file included from ../../../src/gmxlib/gmx_fatal.c:50: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/gmxlib/gmx_fatal.c:46: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o enxio.lo ../../../src/gmxlib/enxio.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/enxio.c -fPIC -DPIC -o .libs/enxio.o ../../../src/gmxlib/enxio.c: In function 'empty_file': ../../../src/gmxlib/enxio.c:220:8: warning: variable 'ret' set but not used [-Wunused-but-set-variable] int ret; ^~~ ../../../src/gmxlib/enxio.c: In function 'get_enx_state': ../../../src/gmxlib/enxio.c:443:16: warning: unused variable 'pcouplmu_nm' [-Wunused-variable] static char *pcouplmu_nm[] = { ^~~~~~~~~~~ At top level: ../../../src/gmxlib/enxio.c:443:16: warning: 'pcouplmu_nm' defined but not used [-Wunused-variable] In file included from ../../../src/gmxlib/enxio.c:46: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/gmxlib/enxio.c:46: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ewald_util.lo ../../../src/gmxlib/ewald_util.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/ewald_util.c -fPIC -DPIC -o .libs/ewald_util.o In file included from ../../../src/gmxlib/ewald_util.c:43: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/gmxlib/ewald_util.c:43: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o confio.lo ../../../src/gmxlib/confio.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/confio.c -fPIC -DPIC -o .libs/confio.o ../../../src/gmxlib/confio.c: In function 'read_espresso_conf': ../../../src/gmxlib/confio.c:448:21: warning: unused variable 'npar' [-Wunused-variable] int natoms,level,npar,r,nprop,p,i,m; ^~~~ ../../../src/gmxlib/confio.c:448:8: warning: unused variable 'natoms' [-Wunused-variable] int natoms,level,npar,r,nprop,p,i,m; ^~~~~~ ../../../src/gmxlib/confio.c: In function 'read_stx_conf': ../../../src/gmxlib/confio.c:1298:14: warning: unused variable 'd' [-Wunused-variable] real d,r1,r2; ^ ../../../src/gmxlib/confio.c:1293:14: warning: unused variable 'buf' [-Wunused-variable] char buf[256]; ^~~ At top level: ../../../src/gmxlib/confio.c:864:13: warning: 'get_conf' defined but not used [-Wunused-function] static void get_conf(FILE *in, char *title, int *natoms, ^~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/gmxlib/confio.c:59: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/gmxlib/confio.c:57: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/gmxlib/confio.c:54: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/gmxlib/confio.c:49: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/gmxlib/confio.c:49: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ ../../../src/gmxlib/confio.c: In function 'write_hconf_box': ../../../src/gmxlib/confio.c:983:20: warning: '%d' directive writing between 2 and 10 bytes into a region of size between 7 and 75 [-Wformat-overflow=] sprintf(format,"%%%d.%df%%%d.%df%%%d.%df" ^~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../src/gmxlib/confio.c:984:17: note: format string is defined here "%%%d.%df%%%d.%df%%%d.%df%%%d.%df%%%d.%df%%%d.%df\n", ^~ ../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [10, 2147483647] sprintf(format,"%%%d.%df%%%d.%df%%%d.%df" ^~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [5, 2147483647] ../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [10, 2147483647] ../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [5, 2147483647] ../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [10, 2147483647] ../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [5, 2147483647] ../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [10, 2147483647] ../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [5, 2147483647] ../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [10, 2147483647] ../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [5, 2147483647] In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../src/gmxlib/confio.c:41: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 56 and 209 bytes into a destination of size 100 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ffscanf.lo ../../../src/gmxlib/ffscanf.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/ffscanf.c -fPIC -DPIC -o .libs/ffscanf.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o cinvsqrtdata.lo ../../../src/gmxlib/cinvsqrtdata.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/cinvsqrtdata.c -fPIC -DPIC -o .libs/cinvsqrtdata.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ifunc.lo ../../../src/gmxlib/ifunc.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/ifunc.c -fPIC -DPIC -o .libs/ifunc.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o futil.lo ../../../src/gmxlib/futil.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/futil.c -fPIC -DPIC -o .libs/futil.o ../../../src/gmxlib/futil.c: In function 'ffopen': ../../../src/gmxlib/futil.c:287:18: warning: unused variable 'bf' [-Wunused-variable] char buf[256],*bf,*bufsize=0,*ptr; ^~ ../../../src/gmxlib/futil.c: In function 'get_libdir': ../../../src/gmxlib/futil.c:397:22: warning: variable 'pdum' set but not used [-Wunused-but-set-variable] char *dir,*ptr,*s,*pdum; ^~~~ ../../../src/gmxlib/futil.c:395:8: warning: unused variable 'test_file' [-Wunused-variable] char test_file[MAX_PATHBUF]; ^~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/gmxlib/futil.c:53: At top level: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ ../../../src/gmxlib/futil.c: In function 'ffopen': ../../../src/gmxlib/futil.c:187:28: warning: '%s' directive writing up to 255 bytes into a region of size 244 [-Wformat-overflow=] sprintf(buf,"gunzip -c < %s",fn); ^~ ../../../src/gmxlib/futil.c:329:12: ff=gunzip(buf,mode); ~~~ In file included from /usr/include/stdio.h:862, from ../../../src/gmxlib/futil.c:41: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 13 and 268 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../src/gmxlib/futil.c:173:32: warning: '%s' directive writing up to 255 bytes into a region of size 240 [-Wformat-overflow=] sprintf(buf,"uncompress -c < %s",fn); ^~ ../../../src/gmxlib/futil.c:324:21: ff=uncompress(buf,mode); ~~~ In file included from /usr/include/stdio.h:862, from ../../../src/gmxlib/futil.c:41: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 17 and 272 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gbutil.lo ../../../src/gmxlib/gbutil.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/gbutil.c -fPIC -DPIC -o .libs/gbutil.o In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/gmxlib/gbutil.c:45: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/gmxlib/gbutil.c:43: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/gmxlib/gbutil.c:43: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o macros.lo ../../../src/gmxlib/macros.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/macros.c -fPIC -DPIC -o .libs/macros.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o filenm.lo ../../../src/gmxlib/filenm.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/filenm.c -fPIC -DPIC -o .libs/filenm.o ../../../src/gmxlib/filenm.c: In function 'add_suffix_to_output_names': ../../../src/gmxlib/filenm.c:811:12: warning: unused variable 'pos' [-Wunused-variable] int i,j,pos; ^~~ In file included from ../../../include/wman.h:44, from ../../../src/gmxlib/filenm.c:48: At top level: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ ../../../src/gmxlib/filenm.c: In function 'add_suffix_to_output_names': ../../../src/gmxlib/filenm.c:825:27: warning: '.' directive writing 1 byte into a region of size between 0 and 4095 [-Wformat-overflow=] sprintf(newname,"%s.%s.%s",buf,suffix,extpos+1); ^ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../src/gmxlib/filenm.c:41: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 3 or more bytes (assuming 4098) into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o invblock.lo ../../../src/gmxlib/invblock.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/invblock.c -fPIC -DPIC -o .libs/invblock.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sparsematrix.lo ../../../src/gmxlib/sparsematrix.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/sparsematrix.c -fPIC -DPIC -o .libs/sparsematrix.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmxfio.lo ../../../src/gmxlib/gmxfio.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/gmxfio.c -fPIC -DPIC -o .libs/gmxfio.o ../../../src/gmxlib/gmxfio.c: In function 'gmx_fio_fopen': ../../../src/gmxlib/gmxfio.c:803:8: warning: unused variable 'fp' [-Wunused-variable] FILE *fp; ^~ ../../../src/gmxlib/gmxfio.c: In function 'gmx_fio_get_output_file_positions': ../../../src/gmxlib/gmxfio.c:885:27: warning: unused variable 'pos' [-Wunused-variable] long pos; ^~~ ../../../src/gmxlib/gmxfio.c:884:34: warning: unused variable 'pos_lo' [-Wunused-variable] int pos_hi,pos_lo; ^~~~~~ ../../../src/gmxlib/gmxfio.c:884:27: warning: unused variable 'pos_hi' [-Wunused-variable] int pos_hi,pos_lo; ^~~~~~ ../../../src/gmxlib/gmxfio.c:883:36: warning: unused variable 'rc' [-Wunused-variable] int i,nfiles,rc,nalloc; ^~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o maths.lo ../../../src/gmxlib/maths.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/maths.c -fPIC -DPIC -o .libs/maths.o In file included from ../../../src/gmxlib/maths.c:43: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o main.lo ../../../src/gmxlib/main.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/main.c -fPIC -DPIC -o .libs/main.o ../../../src/gmxlib/main.c: In function 'par_fn': ../../../src/gmxlib/main.c:68:7: warning: unused variable 'n' [-Wunused-variable] int n; ^ ../../../src/gmxlib/main.c: In function 'gmx_log_open': ../../../src/gmxlib/main.c:124:12: warning: unused variable 'testlen' [-Wunused-variable] int len,testlen,pid; ^~~~~~~ ../../../src/gmxlib/main.c: In function 'init_par': ../../../src/gmxlib/main.c:309:13: warning: unused variable 'i' [-Wunused-variable] int i; ^ In file included from ../../../include/pull.h:44, from ../../../include/mdrun.h:56, from ../../../src/gmxlib/main.c:52: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../include/pull.h:44, from ../../../include/mdrun.h:56, from ../../../src/gmxlib/main.c:52: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/mdrun.h:50, from ../../../src/gmxlib/main.c:52: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o index.lo ../../../src/gmxlib/index.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/index.c -fPIC -DPIC -o .libs/index.o ../../../src/gmxlib/index.c: In function 'analyse_prot': ../../../src/gmxlib/index.c:298:15: warning: unused variable 'nnpres' [-Wunused-variable] int nra,nnpres,npres; ^~~~~~ ../../../src/gmxlib/index.c: In function 'init_index': ../../../src/gmxlib/index.c:532:19: warning: variable 'nread' set but not used [-Wunused-but-set-variable] int i,j,ng,nread; ^~~~~ In file included from ../../../src/gmxlib/index.c:51: At top level: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/gmxlib/index.c:48: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o bondfree.lo ../../../src/gmxlib/bondfree.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/bondfree.c -fPIC -DPIC -o .libs/bondfree.o ../../../src/gmxlib/bondfree.c: In function 'FENE_bonds': ../../../src/gmxlib/bondfree.c:220:9: warning: unused variable 'dr' [-Wunused-variable] real dr,dr2,bm2,omdr2obm2,fbond,vbond,fij,vtot; ^~ ../../../src/gmxlib/bondfree.c: In function 'do_1_thole': ../../../src/gmxlib/bondfree.c:534:20: warning: unused variable 'r12n' [-Wunused-variable] real r12sq,r12_1,r12n,r12bar,v0,v1,fscal,ebar,fff; ^~~~ ../../../src/gmxlib/bondfree.c: In function 'posres': ../../../src/gmxlib/bondfree.c:1136:19: warning: unused variable 'fc' [-Wunused-variable] real v,vtot,fm,*fc; ^~ ../../../src/gmxlib/bondfree.c:1134:22: warning: unused variable 'ki' [-Wunused-variable] int i,ai,m,d,type,ki,npbcdim=0; ^~ ../../../src/gmxlib/bondfree.c: In function 'cross_bond_angle': ../../../src/gmxlib/bondfree.c:1687:32: warning: variable 't3' set but not used [-Wunused-but-set-variable] int i,ai,aj,ak,type,m,t1,t2,t3; ^~ ../../../src/gmxlib/bondfree.c: In function 'bonded_tab': ../../../src/gmxlib/bondfree.c:1762:10: warning: unused variable 'f' [-Wunused-variable] real v,f,dvdl; ^ ../../../src/gmxlib/bondfree.c:1762:8: warning: unused variable 'v' [-Wunused-variable] real v,f,dvdl; ^ ../../../src/gmxlib/bondfree.c: In function 'tab_angles': ../../../src/gmxlib/bondfree.c:1887:12: warning: unused variable 'snt' [-Wunused-variable] real snt,st,sth; ^~~ In file included from ../../../src/gmxlib/bondfree.c:56: At top level: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../src/gmxlib/bondfree.c:42: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/gmxlib/bondfree.c:42: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o names.lo ../../../src/gmxlib/names.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/names.c -fPIC -DPIC -o .libs/names.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o orires.lo ../../../src/gmxlib/orires.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/orires.c -fPIC -DPIC -o .libs/orires.o ../../../src/gmxlib/orires.c: In function 'init_orires': ../../../src/gmxlib/orires.c:59:26: warning: unused variable 'nr' [-Wunused-variable] int i,j,d,ex,nmol,nr,*nr_ex; ^~ In file included from ../../../src/gmxlib/orires.c:49: At top level: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/gmxlib/orires.c:43: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/gmxlib/orires.c:43: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o mtxio.lo ../../../src/gmxlib/mtxio.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/mtxio.c -fPIC -DPIC -o .libs/mtxio.o ../../../src/gmxlib/mtxio.c: In function 'gmx_mtxio_write': ../../../src/gmxlib/mtxio.c:90:13: warning: variable 'xd' set but not used [-Wunused-but-set-variable] XDR * xd; ^~ ../../../src/gmxlib/mtxio.c: In function 'gmx_mtxio_read': ../../../src/gmxlib/mtxio.c:164:13: warning: variable 'xd' set but not used [-Wunused-but-set-variable] XDR * xd; ^~ In file included from ../../../src/gmxlib/mtxio.c:48: At top level: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o network.lo ../../../src/gmxlib/network.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/network.c -fPIC -DPIC -o .libs/network.o ../../../src/gmxlib/network.c: In function 'gmx_setup': ../../../src/gmxlib/network.c:75:12: warning: unused variable 'flag' [-Wunused-variable] int i,flag; ^~~~ ../../../src/gmxlib/network.c:75:10: warning: unused variable 'i' [-Wunused-variable] int i,flag; ^ ../../../src/gmxlib/network.c:73:10: warning: unused variable 'buf' [-Wunused-variable] char buf[256]; ^~~ In file included from ../../../include/statutil.h:51, from ../../../src/gmxlib/network.c:46: At top level: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/gmxlib/network.c:45: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o mtop_util.lo ../../../src/gmxlib/mtop_util.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/mtop_util.c -fPIC -DPIC -o .libs/mtop_util.o ../../../src/gmxlib/mtop_util.c: In function 'gmx_mtop_atomnr_to_molblock_ind': ../../../src/gmxlib/mtop_util.c:105:14: warning: unused variable 'atoms' [-Wunused-variable] t_atoms *atoms; ^~~~~ ../../../src/gmxlib/mtop_util.c: In function 'gmx_mtop_atominfo_global': ../../../src/gmxlib/mtop_util.c:132:21: warning: unused variable 'molb' [-Wunused-variable] gmx_molblock_t *molb; ^~~~ ../../../src/gmxlib/mtop_util.c: In function 'gmx_mtop_ilistloop_all_next': ../../../src/gmxlib/mtop_util.c:384:21: warning: unused variable 'molb' [-Wunused-variable] gmx_molblock_t *molb; ^~~~ ../../../src/gmxlib/mtop_util.c: In function 'gmx_mtop_global_cgs': ../../../src/gmxlib/mtop_util.c:438:14: warning: unused variable 'atoms' [-Wunused-variable] t_atoms *atoms; ^~~~~ ../../../src/gmxlib/mtop_util.c: In function 'gen_local_top': ../../../src/gmxlib/mtop_util.c:669:31: warning: unused variable 'mt' [-Wunused-variable] int mb,srcnr,destnr,ftype,mt,natoms,nposre_old; ^~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o mshift.lo ../../../src/gmxlib/mshift.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/mshift.c -fPIC -DPIC -o .libs/mshift.o ../../../src/gmxlib/mshift.c: In function 'compact_graph': ../../../src/gmxlib/mshift.c:243:12: warning: unused variable 'e' [-Wunused-variable] atom_id *e; ^ ../../../src/gmxlib/mshift.c:242:9: warning: unused variable 'j' [-Wunused-variable] int i,j,n,max_nedge; ^ ../../../src/gmxlib/mshift.c: In function 'mk_graph_ilist': ../../../src/gmxlib/mshift.c:307:13: warning: variable 'nbtot' set but not used [-Wunused-but-set-variable] int i,nbtot; ^~~~~ In file included from ../../../src/gmxlib/mshift.c:46: At top level: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/gmxlib/mshift.c:44: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/gmxlib/mshift.c:44: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nrama.lo ../../../src/gmxlib/nrama.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/nrama.c -fPIC -DPIC -o .libs/nrama.o ../../../src/gmxlib/nrama.c: In function 'get_dih2': ../../../src/gmxlib/nrama.c:179:11: warning: unused variable 'found' [-Wunused-variable] int found,**ff,thisff[NPP]; ^~~~~ ../../../src/gmxlib/nrama.c: In function 'init_rama': ../../../src/gmxlib/nrama.c:307:10: warning: unused variable 'ePBC' [-Wunused-variable] int ePBC; ^~~~ At top level: ../../../src/gmxlib/nrama.c:176:13: warning: 'get_dih2' defined but not used [-Wunused-function] static void get_dih2(t_xrama *xr,t_functype functype[], ^~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../include/nrama.h:45, from ../../../src/gmxlib/nrama.c:49: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ ../../../src/gmxlib/nrama.c: In function 'init_rama': ../../../src/gmxlib/nrama.c:125:21: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(buf,"%s-%d",*atoms->resname[atoms->atom[ff[1]].resnr], ^ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../src/gmxlib/nrama.c:41: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 3 or more bytes (assuming 13) into a destination of size 12 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o matio.lo ../../../src/gmxlib/matio.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/matio.c -fPIC -DPIC -o .libs/matio.o ../../../src/gmxlib/matio.c: In function 'write_xpm_map_split': ../../../src/gmxlib/matio.c:636:16: warning: unused variable 'fac' [-Wunused-variable] real r,g,b,fac; ^~~ ../../../src/gmxlib/matio.c:636:14: warning: unused variable 'b' [-Wunused-variable] real r,g,b,fac; ^ ../../../src/gmxlib/matio.c:636:12: warning: unused variable 'g' [-Wunused-variable] real r,g,b,fac; ^ ../../../src/gmxlib/matio.c:636:10: warning: unused variable 'r' [-Wunused-variable] real r,g,b,fac; ^ ../../../src/gmxlib/matio.c:635:10: warning: unused variable 'i' [-Wunused-variable] int i,ntot; ^ In file included from ../../../src/gmxlib/matio.c:50: At top level: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/gmxlib/matio.c:48: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o mvdata.lo ../../../src/gmxlib/mvdata.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/mvdata.c -fPIC -DPIC -o .libs/mvdata.o ../../../src/gmxlib/mvdata.c: In function 'bc_atoms': ../../../src/gmxlib/mvdata.c:147:7: warning: unused variable 'dummy' [-Wunused-variable] int dummy; ^~~~~ ../../../src/gmxlib/mvdata.c: In function 'bc_groups': ../../../src/gmxlib/mvdata.c:162:7: warning: unused variable 'dummy' [-Wunused-variable] int dummy; ^~~~~ ../../../src/gmxlib/mvdata.c: In function 'bc_ffparams': ../../../src/gmxlib/mvdata.c:290:7: warning: unused variable 'i' [-Wunused-variable] int i; ^ ../../../src/gmxlib/mvdata.c: In function 'bc_molblock': ../../../src/gmxlib/mvdata.c:427:8: warning: unused variable 'bAlloc' [-Wunused-variable] bool bAlloc=TRUE; ^~~~~~ At top level: ../../../src/gmxlib/mvdata.c:275:13: warning: 'bc_idef' defined but not used [-Wunused-function] static void bc_idef(const t_commrec *cr,t_idef *idef) ^~~~~~~ In file included from ../../../src/gmxlib/mvdata.c:50: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/gmxlib/mvdata.c:50: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nrjac.lo ../../../src/gmxlib/nrjac.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/nrjac.c -fPIC -DPIC -o .libs/nrjac.o In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/gmxlib/nrjac.c:44: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nrnb.lo ../../../src/gmxlib/nrnb.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/nrnb.c -fPIC -DPIC -o .libs/nrnb.o ../../../src/gmxlib/nrnb.c: In function 'pr_load': ../../../src/gmxlib/nrnb.c:473:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(j=0; (j 0)?"d":"",'X'+m); ^ In file included from /usr/include/stdio.h:862, from ../../../src/mdlib/pull.c:42: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 4 and 14 bytes into a destination of size 10 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pme.lo ../../../src/mdlib/pme.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/pme.c -fPIC -DPIC -o .libs/pme.o ../../../src/mdlib/pme.c: In function 'init_atomcomm': ../../../src/mdlib/pme.c:1441:22: warning: unused variable 'pgc' [-Wunused-variable] pme_grid_comm_t *pgc; ^~~ ../../../src/mdlib/pme.c:1440:12: warning: unused variable 'nk' [-Wunused-variable] int nn,nk; ^~ ../../../src/mdlib/pme.c:1440:9: warning: unused variable 'nn' [-Wunused-variable] int nn,nk; ^~ ../../../src/mdlib/pme.c:1439:27: warning: unused variable 'i' [-Wunused-variable] int lbnd,rbnd,maxlr,b,i; ^ ../../../src/mdlib/pme.c:1439:25: warning: unused variable 'b' [-Wunused-variable] int lbnd,rbnd,maxlr,b,i; ^ ../../../src/mdlib/pme.c:1439:19: warning: unused variable 'maxlr' [-Wunused-variable] int lbnd,rbnd,maxlr,b,i; ^~~~~ ../../../src/mdlib/pme.c:1439:14: warning: unused variable 'rbnd' [-Wunused-variable] int lbnd,rbnd,maxlr,b,i; ^~~~ ../../../src/mdlib/pme.c:1439:9: warning: unused variable 'lbnd' [-Wunused-variable] int lbnd,rbnd,maxlr,b,i; ^~~~ ../../../src/mdlib/pme.c: In function 'gmx_pme_init': ../../../src/mdlib/pme.c:1541:25: warning: unused variable 'maxlr' [-Wunused-variable] int b,d,i,lbnd,rbnd,maxlr; ^~~~~ ../../../src/mdlib/pme.c:1541:20: warning: unused variable 'rbnd' [-Wunused-variable] int b,d,i,lbnd,rbnd,maxlr; ^~~~ ../../../src/mdlib/pme.c:1541:15: warning: unused variable 'lbnd' [-Wunused-variable] int b,d,i,lbnd,rbnd,maxlr; ^~~~ ../../../src/mdlib/pme.c:1541:11: warning: unused variable 'd' [-Wunused-variable] int b,d,i,lbnd,rbnd,maxlr; ^ ../../../src/mdlib/pme.c:1541:9: warning: unused variable 'b' [-Wunused-variable] int b,d,i,lbnd,rbnd,maxlr; ^ At top level: ../../../src/mdlib/pme.c:198:13: warning: 'pr_grid_dist' defined but not used [-Wunused-function] static void pr_grid_dist(FILE *fp,char *title,t_fftgrid *grid) ^~~~~~~~~~~~ In file included from ../../../src/mdlib/pme.c:81: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/mdlib/pme.c:71: ../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function] static t_complex cdiv(t_complex teller,t_complex noemer) ^~~~ ../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function] static t_complex csub(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function] static t_complex cadd(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function] static t_complex rcexp(real r) ^~~~~ ../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable] static t_complex cnul = { 0.0, 0.0 }; ^~~~ In file included from ../../../src/mdlib/pme.c:70: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/mdlib/pme.c:70: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o stat.lo ../../../src/mdlib/stat.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/stat.c -fPIC -DPIC -o .libs/stat.o In file included from ../../../include/statutil.h:51, from ../../../src/mdlib/stat.c:63: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/mdlib/stat.c:53: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../src/mdlib/stat.c:49: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/mdlib/stat.c:49: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o minimize.lo ../../../src/mdlib/minimize.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/minimize.c -fPIC -DPIC -o .libs/minimize.o ../../../src/mdlib/minimize.c: In function 'get_f_norm_max': ../../../src/mdlib/minimize.c:153:14: warning: unused variable 'fmax2_0' [-Wunused-variable] real fmax2,fmax2_0,fam; ^~~~~~~ ../../../src/mdlib/minimize.c: In function 'evaluate_energy': ../../../src/mdlib/minimize.c:573:12: warning: unused variable 'state' [-Wunused-variable] t_state *state; ^~~~~ ../../../src/mdlib/minimize.c: In function 'do_cg': ../../../src/mdlib/minimize.c:813:10: warning: unused variable 'terminate' [-Wunused-variable] real terminate=0; ^~~~~~~~~ ../../../src/mdlib/minimize.c:798:26: warning: unused variable 'sum' [-Wunused-variable] double gpa,gpb,gpc,tmp,sum[2],minstep; ^~~ ../../../src/mdlib/minimize.c:797:28: warning: unused variable 'sfm' [-Wunused-variable] rvec *f_global,*p,*sf,*sfm; ^~~ ../../../src/mdlib/minimize.c: In function 'do_lbfgs': ../../../src/mdlib/minimize.c:1329:10: warning: unused variable 'terminate' [-Wunused-variable] real terminate; ^~~~~~~~~ ../../../src/mdlib/minimize.c:1320:20: warning: variable 'first' set but not used [-Wunused-but-set-variable] bool converged,first; ^~~~~ ../../../src/mdlib/minimize.c: In function 'do_steep': ../../../src/mdlib/minimize.c:1957:10: warning: unused variable 'terminate' [-Wunused-variable] real terminate=0; ^~~~~~~~~ ../../../src/mdlib/minimize.c:1946:16: warning: unused variable 'dvdlambda' [-Wunused-variable] real ustep,dvdlambda,fnormn; ^~~~~~~~~ ../../../src/mdlib/minimize.c:1945:19: warning: unused variable 'constepsize' [-Wunused-variable] real stepsize,constepsize; ^~~~~~~~~~~ ../../../src/mdlib/minimize.c: In function 'do_nm': ../../../src/mdlib/minimize.c:2163:22: warning: unused variable 'fmax' [-Wunused-variable] real fnorm,fmax; ^~~~ ../../../src/mdlib/minimize.c:2163:16: warning: unused variable 'fnorm' [-Wunused-variable] real fnorm,fmax; ^~~~~ ../../../src/mdlib/minimize.c:2151:16: warning: unused variable 'nfmax' [-Wunused-variable] int nfmax,count; ^~~~~ ../../../src/mdlib/minimize.c:2149:16: warning: unused variable 'bNS' [-Wunused-variable] bool bNS; ^~~ ../../../src/mdlib/minimize.c:2148:18: warning: variable 'lambda' set but not used [-Wunused-but-set-variable] real t,lambda,t0,lam0; ^~~~~~ ../../../src/mdlib/minimize.c: In function 'do_tpi': ../../../src/mdlib/minimize.c:2419:18: warning: unused variable 'end' [-Wunused-variable] int i,start,end; ^~~ ../../../src/mdlib/minimize.c:2419:12: warning: unused variable 'start' [-Wunused-variable] int i,start,end; ^~~~~ ../../../src/mdlib/minimize.c:2404:15: warning: unused variable 'TPI' [-Wunused-variable] const char *TPI="Test Particle Insertion"; ^~~ At top level: ../../../src/mdlib/minimize.c:515:13: warning: 'do_x_sub' defined but not used [-Wunused-function] static void do_x_sub(t_commrec *cr,int n,rvec *x1,rvec *x2,real a,rvec *f) ^~~~~~~~ ../../../src/mdlib/minimize.c:493:13: warning: 'do_x_step' defined but not used [-Wunused-function] static void do_x_step(t_commrec *cr,int n,rvec *x1,real a,rvec *f,rvec *x2) ^~~~~~~~~ In file included from ../../../include/pme.h:46, from ../../../src/mdlib/minimize.c:83: ../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function] static t_complex cdiv(t_complex teller,t_complex noemer) ^~~~ ../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function] static t_complex csub(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function] static t_complex cadd(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function] static t_complex rcexp(real r) ^~~~~ ../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable] static t_complex cnul = { 0.0, 0.0 }; ^~~~ In file included from ../../../include/statutil.h:51, from ../../../src/mdlib/minimize.c:63: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../include/pull.h:44, from ../../../include/update.h:49, from ../../../src/mdlib/minimize.c:59: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../include/pull.h:44, from ../../../include/update.h:49, from ../../../src/mdlib/minimize.c:59: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/mdlib/minimize.c:47: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o tgroup.lo ../../../src/mdlib/tgroup.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/tgroup.c -fPIC -DPIC -o .libs/tgroup.o ../../../src/mdlib/tgroup.c: In function 'init_grptcstat': ../../../src/mdlib/tgroup.c:57:9: warning: unused variable 'j' [-Wunused-variable] int i,j; ^ At top level: ../../../src/mdlib/tgroup.c:141:13: warning: 'accumulate_ekin' defined but not used [-Wunused-function] static void accumulate_ekin(t_commrec *cr,t_grpopts *opts, ^~~~~~~~~~~~~~~ In file included from ../../../include/update.h:48, from ../../../src/mdlib/tgroup.c:51: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../src/mdlib/tgroup.c:48: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/mdlib/tgroup.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o tables.lo ../../../src/mdlib/tables.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/tables.c -fPIC -DPIC -o .libs/tables.o ../../../src/mdlib/tables.c: In function 'done_tabledata': ../../../src/mdlib/tables.c:470:7: warning: unused variable 'i' [-Wunused-variable] int i; ^ ../../../src/mdlib/tables.c: In function 'make_tables': ../../../src/mdlib/tables.c:835:17: warning: unused variable 'j' [-Wunused-variable] int i,j,k,nx,nx0,tabsel[etiNR]; ^ ../../../src/mdlib/tables.c: In function 'make_bonded_table': ../../../src/mdlib/tables.c:950:10: warning: variable 'start' set but not used [-Wunused-but-set-variable] double start; ^~~~~ At top level: ../../../src/mdlib/tables.c:155:13: warning: 'splint' defined but not used [-Wunused-function] static void splint(real xa[],real ya[],real y2a[], ^~~~~~ In file included from ../../../src/mdlib/tables.c:51: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../src/mdlib/tables.c:47: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/mdlib/tables.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o shellfc.lo ../../../src/mdlib/shellfc.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/shellfc.c -fPIC -DPIC -o .libs/shellfc.o ../../../src/mdlib/shellfc.c: In function 'predict_shells': ../../../src/mdlib/shellfc.c:115:18: warning: unused variable 'dt_3' [-Wunused-variable] real dt_1,dt_2,dt_3,fudge,tm,m1,m2,m3; ^~~~ ../../../src/mdlib/shellfc.c:115:13: warning: unused variable 'dt_2' [-Wunused-variable] real dt_1,dt_2,dt_3,fudge,tm,m1,m2,m3; ^~~~ ../../../src/mdlib/shellfc.c: In function 'init_shell_flexcon': ../../../src/mdlib/shellfc.c:197:32: warning: unused variable 'mt' [-Wunused-variable] int i,j,nmol,type,mb,mt,a_offset,cg,mol,ftype,nra; ^~ ../../../src/mdlib/shellfc.c:197:19: warning: unused variable 'nmol' [-Wunused-variable] int i,j,nmol,type,mb,mt,a_offset,cg,mol,ftype,nra; ^~~~ ../../../src/mdlib/shellfc.c: In function 'init_adir': ../../../src/mdlib/shellfc.c:694:12: warning: unused variable 'dx' [-Wunused-variable] rvec p,dx; ^~ ../../../src/mdlib/shellfc.c:694:10: warning: unused variable 'p' [-Wunused-variable] rvec p,dx; ^ ../../../src/mdlib/shellfc.c:691:13: warning: unused variable 'scale' [-Wunused-variable] real dt,scale; ^~~~~ ../../../src/mdlib/shellfc.c:690:16: warning: unused variable 'gt' [-Wunused-variable] int gf,ga,gt; ^~ ../../../src/mdlib/shellfc.c:690:13: warning: unused variable 'ga' [-Wunused-variable] int gf,ga,gt; ^~ ../../../src/mdlib/shellfc.c:690:10: warning: unused variable 'gf' [-Wunused-variable] int gf,ga,gt; ^~ ../../../src/mdlib/shellfc.c: In function 'relax_shell_flexcon': ../../../src/mdlib/shellfc.c:776:19: warning: unused variable 'g' [-Wunused-variable] int nflexcon,g,number_steps,d,Min=0,count=0; ^ ../../../src/mdlib/shellfc.c:772:10: warning: unused variable 'cbuf' [-Wunused-variable] char cbuf[56]; ^~~~ ../../../src/mdlib/shellfc.c:771:19: warning: unused variable 'xiS' [-Wunused-variable] real ftol,xiH,xiS,dum=0; ^~~ ../../../src/mdlib/shellfc.c:771:15: warning: unused variable 'xiH' [-Wunused-variable] real ftol,xiH,xiS,dum=0; ^~~ ../../../src/mdlib/shellfc.c:769:10: warning: unused variable 'dx' [-Wunused-variable] rvec dx; ^~ In file included from ../../../src/mdlib/shellfc.c:55: At top level: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/mdrun.h:50, from ../../../src/mdlib/shellfc.c:45: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../src/mdlib/shellfc.c:43: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/mdlib/shellfc.c:43: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o vcm.lo ../../../src/mdlib/vcm.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/vcm.c -fPIC -DPIC -o .libs/vcm.o ../../../src/mdlib/vcm.c: In function 'calc_vcm_grp': ../../../src/mdlib/vcm.c:122:28: warning: unused variable 'zz' [-Wunused-variable] real m0,xx,xy,xz,yy,yz,zz; ^~ ../../../src/mdlib/vcm.c:122:25: warning: unused variable 'yz' [-Wunused-variable] real m0,xx,xy,xz,yy,yz,zz; ^~ ../../../src/mdlib/vcm.c:122:22: warning: unused variable 'yy' [-Wunused-variable] real m0,xx,xy,xz,yy,yz,zz; ^~ ../../../src/mdlib/vcm.c:122:19: warning: unused variable 'xz' [-Wunused-variable] real m0,xx,xy,xz,yy,yz,zz; ^~ ../../../src/mdlib/vcm.c:122:16: warning: unused variable 'xy' [-Wunused-variable] real m0,xx,xy,xz,yy,yz,zz; ^~ ../../../src/mdlib/vcm.c:122:13: warning: unused variable 'xx' [-Wunused-variable] real m0,xx,xy,xz,yy,yz,zz; ^~ ../../../src/mdlib/vcm.c: In function 'do_stopcm_grp': ../../../src/mdlib/vcm.c:171:11: warning: unused variable 'tm_1' [-Wunused-variable] real tm,tm_1; ^~~~ ../../../src/mdlib/vcm.c:171:8: warning: unused variable 'tm' [-Wunused-variable] real tm,tm_1; ^~ ../../../src/mdlib/vcm.c:170:12: warning: unused variable 'm' [-Wunused-variable] int i,g,m; ^ ../../../src/mdlib/vcm.c: In function 'check_cm_grp': ../../../src/mdlib/vcm.c:250:14: warning: unused variable 'Tcm' [-Wunused-variable] tensor Icm,Tcm; ^~~ In file included from ../../../src/mdlib/vcm.c:43: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/mdlib/vcm.c:43: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sim_util.lo ../../../src/mdlib/sim_util.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/sim_util.c -fPIC -DPIC -o .libs/sim_util.o ../../../src/mdlib/sim_util.c: In function 'calc_virial': ../../../src/mdlib/sim_util.c:250:10: warning: unused variable 'virtest' [-Wunused-variable] tensor virtest; ^~~~~~~ ../../../src/mdlib/sim_util.c:249:9: warning: unused variable 'j' [-Wunused-variable] int i,j; ^ ../../../src/mdlib/sim_util.c: In function 'do_force': ../../../src/mdlib/sim_util.c:348:15: warning: unused variable 'box_size' [-Wunused-variable] static rvec box_size; ^~~~~~~~ ../../../src/mdlib/sim_util.c: In function 'calc_enervirdiff': ../../../src/mdlib/sim_util.c:823:13: warning: variable 'r1' set but not used [-Wunused-but-set-variable] double r0,r1,r,rc3,rc9,ea,eb,ec,pa,pb,pc,pd; ^~ ../../../src/mdlib/sim_util.c: In function 'finish_run': ../../../src/mdlib/sim_util.c:1134:14: warning: unused variable 'status' [-Wunused-variable] MPI_Status status; ^~~~~~ ../../../src/mdlib/sim_util.c:1133:10: warning: unused variable 'nrnb_buf' [-Wunused-variable] double nrnb_buf[4]; ^~~~~~~~ ../../../src/mdlib/sim_util.c:1132:10: warning: unused variable 'sender' [-Wunused-variable] int sender; ^~~~~~ ../../../src/mdlib/sim_util.c: In function 'init_md': ../../../src/mdlib/sim_util.c:1222:13: warning: unused variable 'mod' [-Wunused-variable] real tmpt,mod; ^~~ ../../../src/mdlib/sim_util.c:1222:8: warning: unused variable 'tmpt' [-Wunused-variable] real tmpt,mod; ^~~~ ../../../src/mdlib/sim_util.c:1221:12: warning: unused variable 'n' [-Wunused-variable] int i,j,n; ^ ../../../src/mdlib/sim_util.c:1221:10: warning: unused variable 'j' [-Wunused-variable] int i,j,n; ^ At top level: ../../../src/mdlib/sim_util.c:348:15: warning: 'box_size' defined but not used [-Wunused-variable] static rvec box_size; ^~~~~~~~ In file included from ../../../src/mdlib/sim_util.c:78: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/pme.h:46, from ../../../src/mdlib/sim_util.c:68: ../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function] static t_complex cdiv(t_complex teller,t_complex noemer) ^~~~ ../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function] static t_complex csub(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function] static t_complex cadd(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function] static t_complex rcexp(real r) ^~~~~ ../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable] static t_complex cnul = { 0.0, 0.0 }; ^~~~ In file included from ../../../src/mdlib/sim_util.c:57: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/mdlib/sim_util.c:57: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o wall.lo ../../../src/mdlib/wall.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/wall.c -fPIC -DPIC -o .libs/wall.o ../../../src/mdlib/wall.c: In function 'do_walls': ../../../src/mdlib/wall.c:107:47: warning: unused variable 'Heps' [-Wunused-variable] real tabscale,*VFtab,rt,eps,eps2,Yt,Ft,Geps,Heps,Heps2,Fp,VV,FF; ^~~~ ../../../src/mdlib/wall.c:103:50: warning: variable 'Fwall' set but not used [-Wunused-but-set-variable] real *nbfp,lamfac,fac_d[2],fac_r[2],Cd,Cr,Vtot,Fwall[2]; ^~~~~ In file included from ../../../src/mdlib/wall.c:48: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/mdlib/wall.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/mdlib/wall.c:45: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o wnblist.lo ../../../src/mdlib/wnblist.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/wnblist.c -fPIC -DPIC -o .libs/wnblist.o ../../../src/mdlib/wnblist.c: In function 'read_nblist': ../../../src/mdlib/wnblist.c:135:27: warning: unused variable 'icmp' [-Wunused-variable] int i,ii,j,nnbl,full,icmp,nri,isolv; ^~~~ ../../../src/mdlib/wnblist.c:135:22: warning: unused variable 'full' [-Wunused-variable] int i,ii,j,nnbl,full,icmp,nri,isolv; ^~~~ ../../../src/mdlib/wnblist.c:135:17: warning: unused variable 'nnbl' [-Wunused-variable] int i,ii,j,nnbl,full,icmp,nri,isolv; ^~~~ ../../../src/mdlib/wnblist.c:134:26: warning: unused variable 'b2' [-Wunused-variable] char buf[256],b1[32],b2[32],solv[256],il_code[256]; ^~ ../../../src/mdlib/wnblist.c:134:19: warning: unused variable 'b1' [-Wunused-variable] char buf[256],b1[32],b2[32],solv[256],il_code[256]; ^~ ../../../src/mdlib/wnblist.c:133:10: warning: unused variable 'bNL' [-Wunused-variable] bool bNL; ^~~ In file included from ../../../src/mdlib/wnblist.c:44: At top level: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_fft.lo ../../../src/mdlib/gmx_fft.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/gmx_fft.c -fPIC -DPIC -o .libs/gmx_fft.o In file included from ../../../src/mdlib/gmx_fft.c:30: ../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function] static t_complex cdiv(t_complex teller,t_complex noemer) ^~~~ ../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function] static t_complex csub(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function] static t_complex cadd(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function] static t_complex rcexp(real r) ^~~~~ ../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable] static t_complex cnul = { 0.0, 0.0 }; ^~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o update.lo ../../../src/mdlib/update.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/update.c -fPIC -DPIC -o .libs/update.o ../../../src/mdlib/update.c: In function 'update': ../../../src/mdlib/update.c:771:39: warning: unused variable 'g' [-Wunused-variable] int start,homenr,i,n,m,g; ^ ../../../src/mdlib/update.c:770:20: warning: variable 'dt_1' set but not used [-Wunused-but-set-variable] real dt_1; ^~~~ In file included from ../../../src/mdlib/update.c:62: At top level: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/update.h:48, from ../../../src/mdlib/update.c:53: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../src/mdlib/update.c:50: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/mdlib/update.c:50: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o csettle.lo ../../../src/mdlib/csettle.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/csettle.c -fPIC -DPIC -o .libs/csettle.o ../../../src/mdlib/csettle.c: In function 'xshake': ../../../src/mdlib/csettle.c:183:39: warning: unused variable 'conv' [-Wunused-variable] int i,ll,ii,jj,l3,ix,iy,iz,jx,jy,jz,conv; ^~~~ ../../../src/mdlib/csettle.c: In function 'csettle': ../../../src/mdlib/csettle.c:298:10: warning: unused variable 'shakeret' [-Wunused-variable] int i, shakeret, ow1, hw2, hw3; ^~~~~~~~ In file included from ../../../src/mdlib/csettle.c:42: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/mdlib/csettle.c:42: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_parallel_3dfft.lo ../../../src/mdlib/gmx_parallel_3dfft.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/gmx_parallel_3dfft.c -fPIC -DPIC -o .libs/gmx_parallel_3dfft.o ../../../src/mdlib/gmx_parallel_3dfft.c: In function 'gmx_parallel_3dfft': ../../../src/mdlib/gmx_parallel_3dfft.c:283:22: warning: unused variable 'k' [-Wunused-variable] int i,j,k; ^ ../../../src/mdlib/gmx_parallel_3dfft.c: In function 'gmx_parallel_3dfft_complex2real': ../../../src/mdlib/gmx_parallel_3dfft.c:484:18: warning: variable 'cdata' set but not used [-Wunused-but-set-variable] t_complex * cdata; ^~~~~ ../../../src/mdlib/gmx_parallel_3dfft.c:483:18: warning: variable 'work' set but not used [-Wunused-but-set-variable] t_complex * work; ^~~~ ../../../src/mdlib/gmx_parallel_3dfft.c:480:24: warning: variable 'nzc' set but not used [-Wunused-but-set-variable] int nx,ny,nzc; ^~~ ../../../src/mdlib/gmx_parallel_3dfft.c:480:21: warning: variable 'ny' set but not used [-Wunused-but-set-variable] int nx,ny,nzc; ^~ ../../../src/mdlib/gmx_parallel_3dfft.c:480:18: warning: variable 'nx' set but not used [-Wunused-but-set-variable] int nx,ny,nzc; ^~ ../../../src/mdlib/gmx_parallel_3dfft.c:479:22: warning: unused variable 'k' [-Wunused-variable] int i,j,k; ^ ../../../src/mdlib/gmx_parallel_3dfft.c:479:20: warning: unused variable 'j' [-Wunused-variable] int i,j,k; ^ ../../../src/mdlib/gmx_parallel_3dfft.c:479:18: warning: unused variable 'i' [-Wunused-variable] int i,j,k; ^ In file included from ../../../include/gmx_parallel_3dfft.h:30, from ../../../src/mdlib/gmx_parallel_3dfft.c:32: At top level: ../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function] static t_complex cdiv(t_complex teller,t_complex noemer) ^~~~ ../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function] static t_complex csub(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function] static t_complex cadd(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function] static t_complex rcexp(real r) ^~~~~ ../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable] static t_complex cnul = { 0.0, 0.0 }; ^~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_wallcycle.lo ../../../src/mdlib/gmx_wallcycle.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/gmx_wallcycle.c -fPIC -DPIC -o .libs/gmx_wallcycle.o make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o qmmm.lo ../../../src/mdlib/qmmm.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/qmmm.c -fPIC -DPIC -o .libs/qmmm.o ../../../src/mdlib/qmmm.c: In function 'update_QMMMrec': ../../../src/mdlib/qmmm.c:725:6: warning: unused variable 'MMatoms' [-Wunused-variable] *MMatoms; ^~~~~~~ ../../../src/mdlib/qmmm.c:721:17: warning: variable 'QMMMlist_lr' set but not used [-Wunused-but-set-variable] QMMMlist_sr,QMMMlist_lr; ^~~~~~~~~~~ At top level: ../../../src/mdlib/qmmm.c:131:12: warning: 'int_comp' defined but not used [-Wunused-function] static int int_comp(const void *a,const void *b){ ^~~~~~~~ In file included from ../../../src/mdlib/qmmm.c:60: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/mdlib/qmmm.c:49: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../src/mdlib/qmmm.c:48: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/mdlib/qmmm.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o domdec.lo ../../../src/mdlib/domdec.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/domdec.c -fPIC -DPIC -o .libs/domdec.o ../../../src/mdlib/domdec.c: In function 'dd_move_cellx': ../../../src/mdlib/domdec.c:785:41: warning: unused variable 'k' [-Wunused-variable] int d,d1,dim,dim1,pos,buf_size,i,j,k,p,npulse; ^ ../../../src/mdlib/domdec.c:785:19: warning: unused variable 'dim1' [-Wunused-variable] int d,d1,dim,dim1,pos,buf_size,i,j,k,p,npulse; ^~~~ ../../../src/mdlib/domdec.c: In function 'dd_collect_vec': ../../../src/mdlib/domdec.c:1212:11: warning: unused variable 'buf' [-Wunused-variable] rvec *buf=NULL; ^~~ ../../../src/mdlib/domdec.c:1211:18: warning: unused variable 'nalloc' [-Wunused-variable] int n,i,c,a,nalloc=0; ^~~~~~ ../../../src/mdlib/domdec.c:1211:16: warning: unused variable 'a' [-Wunused-variable] int n,i,c,a,nalloc=0; ^ ../../../src/mdlib/domdec.c:1211:14: warning: unused variable 'c' [-Wunused-variable] int n,i,c,a,nalloc=0; ^ ../../../src/mdlib/domdec.c:1211:12: warning: unused variable 'i' [-Wunused-variable] int n,i,c,a,nalloc=0; ^ ../../../src/mdlib/domdec.c:1211:10: warning: unused variable 'n' [-Wunused-variable] int n,i,c,a,nalloc=0; ^ ../../../src/mdlib/domdec.c:1210:26: warning: unused variable 'ma' [-Wunused-variable] gmx_domdec_master_t *ma; ^~ ../../../src/mdlib/domdec.c: In function 'dd_distribute_vec_scatterv': ../../../src/mdlib/domdec.c:1427:18: warning: unused variable 'nalloc' [-Wunused-variable] int n,i,c,a,nalloc=0; ^~~~~~ ../../../src/mdlib/domdec.c: In function 'gmx_ddcoord2pmeindex': ../../../src/mdlib/domdec.c:1805:28: warning: unused variable 'nc' [-Wunused-variable] ivec coords,coords_pme,nc; ^~ ../../../src/mdlib/domdec.c:1805:17: warning: unused variable 'coords_pme' [-Wunused-variable] ivec coords,coords_pme,nc; ^~~~~~~~~~ ../../../src/mdlib/domdec.c: In function 'make_dd_indices': ../../../src/mdlib/domdec.c:2107:11: warning: variable 'bLocalCG' set but not used [-Wunused-but-set-variable] char *bLocalCG; ^~~~~~~~ ../../../src/mdlib/domdec.c: In function 'check_bLocalCG': ../../../src/mdlib/domdec.c:2162:9: warning: unused variable 'ncg' [-Wunused-variable] int ncg,i,ngl,nerr; ^~~ ../../../src/mdlib/domdec.c: In function 'dd_redistribute_cg': ../../../src/mdlib/domdec.c:3706:49: warning: unused variable 'cell_d' [-Wunused-variable] int c,i,cg,k,k0,k1,d,dim,dim2,dir,d2,d3,d4,cell_d; ^~~~~~ ../../../src/mdlib/domdec.c:3706:46: warning: unused variable 'd4' [-Wunused-variable] int c,i,cg,k,k0,k1,d,dim,dim2,dir,d2,d3,d4,cell_d; ^~ ../../../src/mdlib/domdec.c: In function 'get_load_distribution': ../../../src/mdlib/domdec.c:4326:16: warning: unused variable 'cid' [-Wunused-variable] int d,dim,cid,i,pos; ^~~ ../../../src/mdlib/domdec.c: In function 'setup_dd_grid': ../../../src/mdlib/domdec.c:4781:10: warning: unused variable 'bZYX' [-Wunused-variable] bool bZYX; ^~~~ ../../../src/mdlib/domdec.c: In function 'check_dlb_support': ../../../src/mdlib/domdec.c:5598:9: warning: label 'edlbYES' defined but not used [-Wunused-label] edlbYES: ^~~~~~~ ../../../src/mdlib/domdec.c:5594:9: warning: label 'edlbAUTO' defined but not used [-Wunused-label] edlbAUTO: ^~~~~~~~ ../../../src/mdlib/domdec.c:5592:9: warning: label 'edlbNO' defined but not used [-Wunused-label] edlbNO: ^~~~~~ ../../../src/mdlib/domdec.c:5553:19: warning: unused variable 'dd' [-Wunused-variable] gmx_domdec_t *dd; ^~ ../../../src/mdlib/domdec.c: In function 'init_domain_decomposition': ../../../src/mdlib/domdec.c:5652:14: warning: unused variable 'j' [-Wunused-variable] int d,i,j; ^ ../../../src/mdlib/domdec.c:5652:12: warning: unused variable 'i' [-Wunused-variable] int d,i,j; ^ ../../../src/mdlib/domdec.c:5652:10: warning: unused variable 'd' [-Wunused-variable] int d,i,j; ^ ../../../src/mdlib/domdec.c: In function 'turn_on_dlb': ../../../src/mdlib/domdec.c:6010:10: warning: unused variable 'buf' [-Wunused-variable] char buf[STRLEN]; ^~~ ../../../src/mdlib/domdec.c: In function 'dd_init_bondeds': ../../../src/mdlib/domdec.c:6086:10: warning: unused variable 'd' [-Wunused-variable] int d; ^ ../../../src/mdlib/domdec.c:6085:10: warning: unused variable 'bBondComm' [-Wunused-variable] bool bBondComm; ^~~~~~~~~ ../../../src/mdlib/domdec.c: In function 'setup_dd_communication': ../../../src/mdlib/domdec.c:6486:64: warning: unused variable 'inv_ncg' [-Wunused-variable] real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh; ^~~~~~~ ../../../src/mdlib/domdec.c:6486:58: warning: unused variable 'r2inc' [-Wunused-variable] real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh; ^~~~~ ../../../src/mdlib/domdec.c:6486:47: warning: unused variable 'r_1' [-Wunused-variable] real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh; ^~~ ../../../src/mdlib/domdec.c:6486:43: warning: unused variable 'r_0' [-Wunused-variable] real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh; ^~~ ../../../src/mdlib/domdec.c:6486:23: warning: unused variable 'r_scomm2' [-Wunused-variable] real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh; ^~~~~~~~ ../../../src/mdlib/domdec.c:6486:10: warning: unused variable 'r_mb' [-Wunused-variable] real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh; ^~~~ ../../../src/mdlib/domdec.c: In function 'dd_partition_system': ../../../src/mdlib/domdec.c:7481:12: warning: unused variable 'j' [-Wunused-variable] int i,j,n,cg0=0,ncg_home_old=-1; ^ In file included from ../../../include/mdrun.h:50, from ../../../src/mdlib/domdec.c:44: At top level: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../include/pme.h:46, from ../../../src/mdlib/domdec.c:41: ../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function] static t_complex cdiv(t_complex teller,t_complex noemer) ^~~~ ../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function] static t_complex csub(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function] static t_complex cadd(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function] static t_complex rcexp(real r) ^~~~~ ../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable] static t_complex cnul = { 0.0, 0.0 }; ^~~~ In file included from ../../../src/mdlib/domdec.c:31: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/mdlib/domdec.c:31: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_fft_fftw3.lo ../../../src/mdlib/gmx_fft_fftw3.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/gmx_fft_fftw3.c -fPIC -DPIC -o .libs/gmx_fft_fftw3.o In file included from ../../../include/gmx_fft.h:41, from ../../../src/mdlib/gmx_fft_fftw3.c:27: ../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function] static t_complex cdiv(t_complex teller,t_complex noemer) ^~~~ ../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function] static t_complex csub(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function] static t_complex cadd(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function] static t_complex rcexp(real r) ^~~~~ ../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable] static t_complex cnul = { 0.0, 0.0 }; ^~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o qm_gaussian.lo ../../../src/mdlib/qm_gaussian.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/qm_gaussian.c -fPIC -DPIC -o .libs/qm_gaussian.o ../../../src/mdlib/qm_gaussian.c: In function 'init_gaussian': ../../../src/mdlib/qm_gaussian.c:73:6: warning: unused variable 'rffile' [-Wunused-variable] *rffile=NULL,*out=NULL; ^~~~~~ In file included from ../../../src/mdlib/qm_gaussian.c:60: At top level: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/mdlib/qm_gaussian.c:49: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../src/mdlib/qm_gaussian.c:48: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/mdlib/qm_gaussian.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o vsite.lo ../../../src/mdlib/vsite.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/vsite.c -fPIC -DPIC -o .libs/vsite.o ../../../src/mdlib/vsite.c: In function 'constr_vsiten': ../../../src/mdlib/vsite.c:437:8: warning: unused variable 'xs' [-Wunused-variable] rvec xs,x1,dx; ^~ ../../../src/mdlib/vsite.c: In function 'construct_vsites': ../../../src/mdlib/vsite.c:484:25: warning: unused variable 'rtmp' [-Wunused-variable] rvec reftmp,vtmp,rtmp; ^~~~ ../../../src/mdlib/vsite.c:484:20: warning: unused variable 'vtmp' [-Wunused-variable] rvec reftmp,vtmp,rtmp; ^~~~ ../../../src/mdlib/vsite.c:484:13: warning: unused variable 'reftmp' [-Wunused-variable] rvec reftmp,vtmp,rtmp; ^~~~~~ ../../../src/mdlib/vsite.c:478:19: warning: unused variable 'ii' [-Wunused-variable] int i,inc,ii,nra,nr,tp,ftype; ^~ ../../../src/mdlib/vsite.c: In function 'spread_vsite2': ../../../src/mdlib/vsite.c:655:11: warning: unused variable 'b' [-Wunused-variable] real b; ^ ../../../src/mdlib/vsite.c: In function 'spread_vsite3FD': ../../../src/mdlib/vsite.c:770:23: warning: unused variable 'd' [-Wunused-variable] int svi,sji,skj,d; ^ ../../../src/mdlib/vsite.c:767:14: warning: unused variable 'fz' [-Wunused-variable] real fx,fy,fz,c,invl,fproj,a1; ^~ ../../../src/mdlib/vsite.c:767:11: warning: unused variable 'fy' [-Wunused-variable] real fx,fy,fz,c,invl,fproj,a1; ^~ ../../../src/mdlib/vsite.c:767:8: warning: unused variable 'fx' [-Wunused-variable] real fx,fy,fz,c,invl,fproj,a1; ^~ ../../../src/mdlib/vsite.c: In function 'spread_vsite_f': ../../../src/mdlib/vsite.c:1255:19: warning: unused variable 'm' [-Wunused-variable] int i,inc,m,nra,nr,tp,ftype; ^ ../../../src/mdlib/vsite.c: In function 'count_intercg_vsite': ../../../src/mdlib/vsite.c:1409:11: warning: unused variable 'mt' [-Wunused-variable] int mb,mt,ftype,nral,i,cg,a; ^~ ../../../src/mdlib/vsite.c: In function 'get_vsite_pbc': ../../../src/mdlib/vsite.c:1448:38: warning: unused variable 'cg_c' [-Wunused-variable] int ftype,nral,i,j,vsi,vsite,cg_v,cg_c,a,nc3=0; ^~~~ ../../../src/mdlib/vsite.c: In function 'init_vsite': ../../../src/mdlib/vsite.c:1559:13: warning: unused variable 'cg' [-Wunused-variable] int *a2cg,cg; ^~ In file included from ../../../src/mdlib/vsite.c:46: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/mdlib/vsite.c:46: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o clincs.lo ../../../src/mdlib/clincs.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/clincs.c -fPIC -DPIC -o .libs/clincs.o ../../../src/mdlib/clincs.c: In function 'do_lincsp': ../../../src/mdlib/clincs.c:189:54: warning: unused variable 'lam' [-Wunused-variable] real tmp0,tmp1,tmp2,im1,im2,mvb,rlen,len,wfac,lam; ^~~ ../../../src/mdlib/clincs.c:189:49: warning: unused variable 'wfac' [-Wunused-variable] real tmp0,tmp1,tmp2,im1,im2,mvb,rlen,len,wfac,lam; ^~~~ ../../../src/mdlib/clincs.c:189:45: warning: unused variable 'len' [-Wunused-variable] real tmp0,tmp1,tmp2,im1,im2,mvb,rlen,len,wfac,lam; ^~~ ../../../src/mdlib/clincs.c:189:40: warning: unused variable 'rlen' [-Wunused-variable] real tmp0,tmp1,tmp2,im1,im2,mvb,rlen,len,wfac,lam; ^~~~ ../../../src/mdlib/clincs.c: In function 'set_lincs': ../../../src/mdlib/clincs.c:764:14: warning: variable 'bLocal' set but not used [-Wunused-but-set-variable] bool bLocal; ^~~~~~ ../../../src/mdlib/clincs.c: In function 'constrain_lincs': ../../../src/mdlib/clincs.c:1084:25: warning: unused variable 'error' [-Wunused-variable] int i,warn,p_imax,error; ^~~~~ At top level: ../../../src/mdlib/clincs.c:1034:13: warning: 'dump_conf' defined but not used [-Wunused-function] static void dump_conf(gmx_domdec_t *dd,struct gmx_lincsdata *li, ^~~~~~~~~ In file included from ../../../include/mdrun.h:50, from ../../../src/mdlib/clincs.c:50: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../src/mdlib/clincs.c:47: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/mdlib/clincs.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/mdlib/clincs.c:45: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -version-info 5:0:0 -lgslcblas -o libmd_mpi.la -rpath /usr/lib64 calcmu.lo calcvir.lo constr.lo coupling.lo domdec.lo domdec_con.lo domdec_network.lo domdec_setup.lo domdec_top.lo ebin.lo edsam.lo ewald.lo fftgrid.lo force.lo ghat.lo init.lo mdatom.lo mdebin.lo minimize.lo mvxvf.lo ns.lo nsgrid.lo perf_est.lo pme.lo pme_pp.lo pppm.lo partdec.lo pull.lo pullutil.lo rf_util.lo shakef.lo sim_util.lo shellfc.lo stat.lo tables.lo tgroup.lo update.lo vcm.lo vsite.lo wall.lo wnblist.lo csettle.lo clincs.lo qmmm.lo gmx_fft.lo gmx_parallel_3dfft.lo gmx_wallcycle.lo qm_gaussian.lo gmx_fft_fftw3.lo ../gmxlib/libgmx_mpi.la -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath mpicc -shared .libs/calcmu.o .libs/calcvir.o .libs/constr.o .libs/coupling.o .libs/domdec.o .libs/domdec_con.o .libs/domdec_network.o .libs/domdec_setup.o .libs/domdec_top.o .libs/ebin.o .libs/edsam.o .libs/ewald.o .libs/fftgrid.o .libs/force.o .libs/ghat.o .libs/init.o .libs/mdatom.o .libs/mdebin.o .libs/minimize.o .libs/mvxvf.o .libs/ns.o .libs/nsgrid.o .libs/perf_est.o .libs/pme.o .libs/pme_pp.o .libs/pppm.o .libs/partdec.o .libs/pull.o .libs/pullutil.o .libs/rf_util.o .libs/shakef.o .libs/sim_util.o .libs/shellfc.o .libs/stat.o .libs/tables.o .libs/tgroup.o .libs/update.o .libs/vcm.o .libs/vsite.o .libs/wall.o .libs/wnblist.o .libs/csettle.o .libs/clincs.o .libs/qmmm.o .libs/gmx_fft.o .libs/gmx_parallel_3dfft.o .libs/gmx_wallcycle.o .libs/qm_gaussian.o .libs/gmx_fft_fftw3.o -lgslcblas ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wl,-soname -Wl,libmd_mpi.so.5 -o .libs/libmd_mpi.so.5.0.0 (cd .libs && rm -f libmd_mpi.so.5 && ln -s libmd_mpi.so.5.0.0 libmd_mpi.so.5) (cd .libs && rm -f libmd_mpi.so && ln -s libmd_mpi.so.5.0.0 libmd_mpi.so) creating libmd_mpi.la (cd .libs && rm -f libmd_mpi.la && ln -s ../libmd_mpi.la libmd_mpi.la) make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib' Making all in kernel make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o compute_io.lo ../../../src/kernel/compute_io.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/compute_io.c -fPIC -DPIC -o .libs/compute_io.o ../../../src/kernel/compute_io.c: In function 'compute_io': ../../../src/kernel/compute_io.c:49:53: warning: unused variable 'nfep' [-Wunused-variable] int nstx=0,nstv=0,nstf=0,nste=0,nstlog=0,nstxtc=0,nfep=0; ^~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o add_par.lo ../../../src/kernel/add_par.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/add_par.c -fPIC -DPIC -o .libs/add_par.o In file included from ../../../src/kernel/hackblock.h:41, from ../../../src/kernel/add_par.c:46: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/kernel/add_par.c:44: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o convparm.lo ../../../src/kernel/convparm.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/convparm.c -fPIC -DPIC -o .libs/convparm.o ../../../src/kernel/convparm.c: In function 'new_interaction_list': ../../../src/kernel/convparm.c:404:7: warning: unused variable 'i' [-Wunused-variable] int i; ^ ../../../src/kernel/convparm.c: In function 'convert_params': ../../../src/kernel/convparm.c:414:12: warning: unused variable 'j' [-Wunused-variable] int i,j,maxtypes,mt; ^ At top level: ../../../src/kernel/convparm.c:402:13: warning: 'new_interaction_list' defined but not used [-Wunused-function] static void new_interaction_list(t_ilist *ilist) ^~~~~~~~~~~~~~~~~~~~ In file included from ../../../src/kernel/topio.h:41, from ../../../src/kernel/convparm.c:48: ../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable] static const char *couple_lam[ecouplamNR+1] = { ^~~~~~~~~~ ../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable] static const char *constraints[eshNR+1] = { ^~~~~~~~~~~ In file included from ../../../src/kernel/readir.h:43, from ../../../src/kernel/topio.h:41, from ../../../src/kernel/convparm.c:48: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/readir.h:42, from ../../../src/kernel/topio.h:41, from ../../../src/kernel/convparm.c:48: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/kernel/convparm.c:44: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/convparm.c:44: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmxcpp.lo ../../../src/kernel/gmxcpp.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/gmxcpp.c -fPIC -DPIC -o .libs/gmxcpp.o ../../../src/kernel/gmxcpp.c: In function 'cpp_close_file': ../../../src/kernel/gmxcpp.c:453:7: warning: unused variable 'i' [-Wunused-variable] int i; ^ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gpp_bond_atomtype.lo ../../../src/kernel/gpp_bond_atomtype.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/gpp_bond_atomtype.c -fPIC -DPIC -o .libs/gpp_bond_atomtype.o make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gpp_atomtype.lo ../../../src/kernel/gpp_atomtype.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/gpp_atomtype.c -fPIC -DPIC -o .libs/gpp_atomtype.o In file included from ../../../src/kernel/topdirs.h:40, from ../../../src/kernel/gpp_atomtype.c:45: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o genhydro.lo ../../../src/kernel/genhydro.c mkdir .libs mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/genhydro.c -fPIC -DPIC -o .libs/genhydro.o In file included from ../../../src/kernel/hackblock.h:42, from ../../../src/kernel/genhydro.h:41, from ../../../src/kernel/genhydro.c:56: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/genhydro.h:40, from ../../../src/kernel/genhydro.c:56: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/kernel/genhydro.c:51: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/kernel/genhydro.c:50: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/genhydro.c:50: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/genhydro.c:46: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o grompp.o ../../../src/kernel/grompp.c ../../../src/kernel/grompp.c: In function 'new_status': ../../../src/kernel/grompp.c:300:3: warning: statement with no effect [-Wunused-value] mbs; ^~~ ../../../src/kernel/grompp.c: In function 'read_posres': ../../../src/kernel/grompp.c:478:10: warning: unused variable 'bFirst' [-Wunused-variable] bool bFirst = TRUE; ^~~~~~ ../../../src/kernel/grompp.c: In function 'gen_posres': ../../../src/kernel/grompp.c:604:9: warning: unused variable 'j' [-Wunused-variable] int i,j; ^ ../../../src/kernel/grompp.c:604:7: warning: unused variable 'i' [-Wunused-variable] int i,j; ^ ../../../src/kernel/grompp.c: In function 'main': ../../../src/kernel/grompp.c:769:16: warning: unused variable 'natoms' [-Wunused-variable] int natoms,nvsite,comb,mt; ^~~~~~ In file included from ../../../src/kernel/hackblock.h:41, from ../../../src/kernel/pdb2top.h:43, from ../../../src/kernel/add_par.h:41, from ../../../src/kernel/grompp.c:74: At top level: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/kernel/grompp.c:60: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/grompp.c:60: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/grompp.c:54: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/kernel/grompp.c:50: ../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable] static const char *couple_lam[ecouplamNR+1] = { ^~~~~~~~~~ ../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable] static const char *constraints[eshNR+1] = { ^~~~~~~~~~~ In file included from ../../../src/kernel/readir.h:43, from ../../../src/kernel/grompp.c:50: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/readir.h:42, from ../../../src/kernel/grompp.c:50: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ ../../../src/kernel/grompp.c: In function 'main': ../../../src/kernel/grompp.c:380:19: warning: '%s' directive writing up to 4095 bytes into a region of size between 4045 and 4055 [-Wformat-overflow=] sprintf(buf,"%d non-matching atom name%s\n" ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../src/kernel/grompp.c:856:14: new_status(fn,opt2fn_null("-pp",NFILE,fnm),opt2fn("-c",NFILE,fnm), ~~ ../../../src/kernel/grompp.c:381:25: note: format string is defined here "atom names from %s will be used\n" ^~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../src/kernel/grompp.c:46: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 89 or more bytes (assuming 4194) into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o h_db.lo ../../../src/kernel/h_db.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/h_db.c -fPIC -DPIC -o .libs/h_db.o ../../../src/kernel/h_db.c: In function 'dump_h_db': ../../../src/kernel/h_db.c:113:10: warning: unused variable 'j' [-Wunused-variable] int i,j,k; ^ In file included from ../../../src/kernel/hackblock.h:42, from ../../../src/kernel/h_db.h:41, from ../../../src/kernel/h_db.c:47: At top level: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/hackblock.h:41, from ../../../src/kernel/h_db.h:41, from ../../../src/kernel/h_db.c:47: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gen_ad.lo ../../../src/kernel/gen_ad.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/gen_ad.c -fPIC -DPIC -o .libs/gen_ad.o ../../../src/kernel/gen_ad.c: In function 'get_impropers': ../../../src/kernel/gen_ad.c:437:25: warning: unused variable 'r' [-Wunused-variable] int nidih,i,j,k,r,start,ninc,nalloc; ^ ../../../src/kernel/gen_ad.c:436:15: warning: unused variable 'hbidih' [-Wunused-variable] t_rbonded *hbidih; ^~~~~~ ../../../src/kernel/gen_ad.c:434:14: warning: unused variable 'a0' [-Wunused-variable] char *a0; ^~ ../../../src/kernel/gen_ad.c: In function 'clean_excls': ../../../src/kernel/gen_ad.c:576:26: warning: unused variable 'n' [-Wunused-variable] int i,j,j1,k,k1,l,l1,m,n,e; ^ ../../../src/kernel/gen_ad.c:576:24: warning: unused variable 'm' [-Wunused-variable] int i,j,j1,k,k1,l,l1,m,n,e; ^ ../../../src/kernel/gen_ad.c: In function 'generate_excls': ../../../src/kernel/gen_ad.c:618:28: warning: unused variable 'e' [-Wunused-variable] int i,j,j1,k,k1,l,l1,m,n,e,N; ^ ../../../src/kernel/gen_ad.c:618:24: warning: unused variable 'm' [-Wunused-variable] int i,j,j1,k,k1,l,l1,m,n,e,N; ^ ../../../src/kernel/gen_ad.c:618:21: warning: unused variable 'l1' [-Wunused-variable] int i,j,j1,k,k1,l,l1,m,n,e,N; ^~ ../../../src/kernel/gen_ad.c:618:19: warning: unused variable 'l' [-Wunused-variable] int i,j,j1,k,k1,l,l1,m,n,e,N; ^ ../../../src/kernel/gen_ad.c:618:16: warning: unused variable 'k1' [-Wunused-variable] int i,j,j1,k,k1,l,l1,m,n,e,N; ^~ ../../../src/kernel/gen_ad.c:618:14: warning: unused variable 'k' [-Wunused-variable] int i,j,j1,k,k1,l,l1,m,n,e,N; ^ ../../../src/kernel/gen_ad.c:618:11: warning: unused variable 'j1' [-Wunused-variable] int i,j,j1,k,k1,l,l1,m,n,e,N; ^~ At top level: ../../../src/kernel/gen_ad.c:327:13: warning: 'dump_param' defined but not used [-Wunused-function] static void dump_param(FILE *fp,char *title,int n,t_param ps[]) ^~~~~~~~~~ ../../../src/kernel/gen_ad.c:289:13: warning: 'ideq' defined but not used [-Wunused-function] static bool ideq(t_param *p1, t_param *p2) ^~~~ ../../../src/kernel/gen_ad.c:114:13: warning: 'aeq' defined but not used [-Wunused-function] static bool aeq(t_param *p1, t_param *p2) ^~~ In file included from ../../../src/kernel/hackblock.h:41, from ../../../src/kernel/resall.h:41, from ../../../src/kernel/gen_ad.c:57: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/kernel/topio.h:41, from ../../../src/kernel/gen_ad.c:51: ../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable] static const char *couple_lam[ecouplamNR+1] = { ^~~~~~~~~~ ../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable] static const char *constraints[eshNR+1] = { ^~~~~~~~~~~ In file included from ../../../src/kernel/readir.h:42, from ../../../src/kernel/topio.h:41, from ../../../src/kernel/gen_ad.c:51: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/kernel/toputil.h:40, from ../../../src/kernel/gen_ad.c:50: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/gen_ad.c:48: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/gen_ad.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o hackblock.lo ../../../src/kernel/hackblock.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/hackblock.c -fPIC -DPIC -o .libs/hackblock.o In file included from ../../../src/kernel/hackblock.c:44: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/hackblock.c:44: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/hackblock.h:42, from ../../../src/kernel/hackblock.c:42: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/hackblock.h:41, from ../../../src/kernel/hackblock.c:42: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pgutil.lo ../../../src/kernel/pgutil.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/pgutil.c -fPIC -DPIC -o .libs/pgutil.o make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o hizzie.lo ../../../src/kernel/hizzie.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/hizzie.c -fPIC -DPIC -o .libs/hizzie.o ../../../src/kernel/hizzie.c: In function 'set_histp': ../../../src/kernel/hizzie.c:195:8: warning: unused variable 'd' [-Wunused-variable] real d; ^ ../../../src/kernel/hizzie.c:192:27: warning: unused variable 'his0' [-Wunused-variable] int i,j,nd,na,aj,hisnr,his0,type=-1; ^~~~ ../../../src/kernel/hizzie.c:192:18: warning: unused variable 'aj' [-Wunused-variable] int i,j,nd,na,aj,hisnr,his0,type=-1; ^~ ../../../src/kernel/hizzie.c:188:15: warning: unused variable 'bHaveH' [-Wunused-variable] bool *hbond,bHaveH=FALSE; ^~~~~~ In file included from ../../../src/kernel/toputil.h:40, from ../../../src/kernel/hizzie.c:48: At top level: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/hizzie.c:46: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/hizzie.c:46: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/hizzie.c:44: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sorting.lo ../../../src/kernel/sorting.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/sorting.c -fPIC -DPIC -o .libs/sorting.o make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o readpull.lo ../../../src/kernel/readpull.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/readpull.c -fPIC -DPIC -o .libs/readpull.o ../../../src/kernel/readpull.c: In function 'read_pullparams': ../../../src/kernel/readpull.c:102:22: warning: unused variable 'nchar' [-Wunused-variable] int ninp,nerror,i,nchar,ndim,nscan,m; ^~~~~ In file included from ../../../src/kernel/readpull.c:54: At top level: ../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable] static const char *couple_lam[ecouplamNR+1] = { ^~~~~~~~~~ ../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable] static const char *constraints[eshNR+1] = { ^~~~~~~~~~~ In file included from ../../../src/kernel/readir.h:43, from ../../../src/kernel/readpull.c:54: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/readpull.c:46: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/readpull.c:46: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/kernel/readpull.c:45: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o resall.lo ../../../src/kernel/resall.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/resall.c -fPIC -DPIC -o .libs/resall.o In file included from ../../../src/kernel/hackblock.h:42, from ../../../src/kernel/resall.h:41, from ../../../src/kernel/resall.c:49: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/hackblock.h:41, from ../../../src/kernel/resall.h:41, from ../../../src/kernel/resall.c:49: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o specbond.lo ../../../src/kernel/specbond.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/specbond.c -fPIC -DPIC -o .libs/specbond.o In file included from ../../../src/kernel/specbond.c:49: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/specbond.c:49: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/pdb2top.h:41, from ../../../src/kernel/specbond.h:40, from ../../../src/kernel/specbond.c:47: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/specbond.c:43: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ ../../../src/kernel/specbond.c: In function 'mk_specbonds': ../../../src/kernel/specbond.c:236:19: warning: '%d' directive writing between 1 and 11 bytes into a region of size 10 [-Wformat-overflow=] sprintf(buf,"%s%d",*pdba->resname[pdba->atom[sgp[i]].resnr], ^~ ../../../src/kernel/specbond.c:236:16: note: directive argument in the range [-2147483647, 2147483647] sprintf(buf,"%s%d",*pdba->resname[pdba->atom[sgp[i]].resnr], ^~~~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../include/typedefs.h:52, from ../../../src/kernel/specbond.c:42: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 12) into a destination of size 10 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../src/kernel/specbond.c:245:19: warning: '%d' directive writing between 1 and 11 bytes into a region of size 10 [-Wformat-overflow=] sprintf(buf,"%s%d",*pdba->atomname[sgp[i]], sgp[i]+1); ^~ ../../../src/kernel/specbond.c:245:16: note: directive argument in the range [-2147483647, 2147483647] sprintf(buf,"%s%d",*pdba->atomname[sgp[i]], sgp[i]+1); ^~~~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../include/typedefs.h:52, from ../../../src/kernel/specbond.c:42: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 12) into a destination of size 10 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../src/kernel/specbond.c:252:19: warning: '%d' directive writing between 1 and 11 bytes into a region of size 10 [-Wformat-overflow=] sprintf(buf,"%s%d",*pdba->resname[pdba->atom[sgp[i]].resnr], ^~ ../../../src/kernel/specbond.c:252:16: note: directive argument in the range [-2147483647, 2147483647] sprintf(buf,"%s%d",*pdba->resname[pdba->atom[sgp[i]].resnr], ^~~~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../include/typedefs.h:52, from ../../../src/kernel/specbond.c:42: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 12) into a destination of size 10 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../src/kernel/specbond.c:255:19: warning: '%d' directive writing between 1 and 11 bytes into a region of size 10 [-Wformat-overflow=] sprintf(buf,"%s%d", *pdba->atomname[sgp[i]], sgp[i]+1); ^~ ../../../src/kernel/specbond.c:255:16: note: directive argument in the range [-2147483647, 2147483647] sprintf(buf,"%s%d", *pdba->atomname[sgp[i]], sgp[i]+1); ^~~~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../include/typedefs.h:52, from ../../../src/kernel/specbond.c:42: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 12) into a destination of size 10 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ter_db.lo ../../../src/kernel/ter_db.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/ter_db.c -fPIC -DPIC -o .libs/ter_db.o ../../../src/kernel/ter_db.c: In function 'print_ter_db': ../../../src/kernel/ter_db.c:105:20: warning: unused variable 'nname' [-Wunused-variable] char buf[STRLEN],nname[STRLEN]; ^~~~~ ../../../src/kernel/ter_db.c: In function 'filter_ter': ../../../src/kernel/ter_db.c:301:12: warning: unused variable 's2' [-Wunused-variable] char *s,*s2,*c; ^~ ../../../src/kernel/ter_db.c:299:13: warning: unused variable 'len' [-Wunused-variable] int i,j,n,len,none_idx; ^~~ In file included from ../../../src/kernel/hackblock.h:42, from ../../../src/kernel/resall.h:41, from ../../../src/kernel/ter_db.c:45: At top level: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/hackblock.h:41, from ../../../src/kernel/resall.h:41, from ../../../src/kernel/ter_db.c:45: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o tomorse.lo ../../../src/kernel/tomorse.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/tomorse.c -fPIC -DPIC -o .libs/tomorse.o In file included from ../../../src/kernel/tomorse.c:46: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pdb2top.lo ../../../src/kernel/pdb2top.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/pdb2top.c -fPIC -DPIC -o .libs/pdb2top.o ../../../src/kernel/pdb2top.c: In function 'missing_atoms': ../../../src/kernel/pdb2top.c:75:16: warning: unused variable 'bRet' [-Wunused-variable] bool bFound, bRet; ^~~~ In file included from ../../../src/kernel/topio.h:41, from ../../../src/kernel/pdb2top.c:57: At top level: ../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable] static const char *couple_lam[ecouplamNR+1] = { ^~~~~~~~~~ ../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable] static const char *constraints[eshNR+1] = { ^~~~~~~~~~~ In file included from ../../../src/kernel/readir.h:42, from ../../../src/kernel/topio.h:41, from ../../../src/kernel/pdb2top.c:57: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/kernel/hackblock.h:41, from ../../../src/kernel/pdb2top.h:43, from ../../../src/kernel/pdb2top.c:50: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/kernel/pdb2top.h:41, from ../../../src/kernel/pdb2top.c:50: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/pdb2top.c:44: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/kernel/pdb2top.c:43: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/pdb2top.c:43: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o topdirs.lo ../../../src/kernel/topdirs.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/topdirs.c -fPIC -DPIC -o .libs/topdirs.o make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o topexcl.lo ../../../src/kernel/topexcl.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/topexcl.c -fPIC -DPIC -o .libs/topexcl.o In file included from ../../../include/gpp_nextnb.h:40, from ../../../src/kernel/topexcl.c:45: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gen_vsite.lo ../../../src/kernel/gen_vsite.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/gen_vsite.c -fPIC -DPIC -o .libs/gen_vsite.o ../../../src/kernel/gen_vsite.c: In function 'read_vsite_database': ../../../src/kernel/gen_vsite.c:150:34: warning: unused variable 'prevdir' [-Wunused-variable] int i,j,n,k,nvsite,ntop,curdir,prevdir; ^~~~~~~ ../../../src/kernel/gen_vsite.c:150:9: warning: unused variable 'j' [-Wunused-variable] int i,j,n,k,nvsite,ntop,curdir,prevdir; ^ ../../../src/kernel/gen_vsite.c: In function 'add_vsites': ../../../src/kernel/gen_vsite.c:477:33: warning: unused variable 'bb' [-Wunused-variable] int i,j,ftype,other,moreheavy,bb; ^~ ../../../src/kernel/gen_vsite.c: In function 'gen_vsites_6ring': ../../../src/kernel/gen_vsite.c:560:32: warning: variable 'yCE2' set but not used [-Wunused-but-set-variable] real xCG,yCG,xCE1,yCE1,xCE2,yCE2; ^~~~ ../../../src/kernel/gen_vsite.c:560:27: warning: variable 'xCE2' set but not used [-Wunused-but-set-variable] real xCG,yCG,xCE1,yCE1,xCE2,yCE2; ^~~~ ../../../src/kernel/gen_vsite.c:560:22: warning: variable 'yCE1' set but not used [-Wunused-but-set-variable] real xCG,yCG,xCE1,yCE1,xCE2,yCE2; ^~~~ ../../../src/kernel/gen_vsite.c:560:17: warning: variable 'xCE1' set but not used [-Wunused-but-set-variable] real xCG,yCG,xCE1,yCE1,xCE2,yCE2; ^~~~ ../../../src/kernel/gen_vsite.c:560:13: warning: variable 'yCG' set but not used [-Wunused-but-set-variable] real xCG,yCG,xCE1,yCE1,xCE2,yCE2; ^~~ ../../../src/kernel/gen_vsite.c: In function 'calc_vsite3_param': ../../../src/kernel/gen_vsite.c:693:13: warning: variable 'b_ik' set but not used [-Wunused-but-set-variable] real b_ij,b_ik; ^~~~ ../../../src/kernel/gen_vsite.c:693:8: warning: variable 'b_ij' set but not used [-Wunused-but-set-variable] real b_ij,b_ik; ^~~~ ../../../src/kernel/gen_vsite.c: In function 'gen_vsites_trp': ../../../src/kernel/gen_vsite.c:741:12: warning: unused variable 'c' [-Wunused-variable] real a,b,c[MAXFORCEPARAM]; ^ ../../../src/kernel/gen_vsite.c:740:14: warning: unused variable 'mtot' [-Wunused-variable] real mwtot,mtot,mM[NMASS],dCBM1,dCBM2,dM1M2; ^~~~ ../../../src/kernel/gen_vsite.c:740:8: warning: unused variable 'mwtot' [-Wunused-variable] real mwtot,mtot,mM[NMASS],dCBM1,dCBM2,dM1M2; ^~~~~ ../../../src/kernel/gen_vsite.c:738:8: warning: unused variable 'xM' [-Wunused-variable] real xM[NMASS]; ^~ ../../../src/kernel/gen_vsite.c:735:8: warning: variable 'a_CB_CG_CD1' set but not used [-Wunused-but-set-variable] real a_CB_CG_CD1,a_CD2_CG_CD1,a_CE2_CZ2_HZ2,a_CZ2_CH2_HH2; ^~~~~~~~~~~ ../../../src/kernel/gen_vsite.c:729:20: warning: unused variable 'dist' [-Wunused-variable] real lineA,lineB,dist; ^~~~ ../../../src/kernel/gen_vsite.c:729:14: warning: variable 'lineB' set but not used [-Wunused-but-set-variable] real lineA,lineB,dist; ^~~~~ ../../../src/kernel/gen_vsite.c:728:32: warning: unused variable 'I' [-Wunused-variable] real xcom[NMASS],ycom[NMASS],I,alpha; ^ ../../../src/kernel/gen_vsite.c: In function 'gen_vsites_tyr': ../../../src/kernel/gen_vsite.c:968:8: warning: unused variable 'vmass' [-Wunused-variable] real vmass,vdist,mM; ^~~~~ ../../../src/kernel/gen_vsite.c: In function 'do_vsites': ../../../src/kernel/gen_vsite.c:1332:29: warning: unused variable 'bb' [-Wunused-variable] int Hatoms[4],heavies[4],bb; ^~ In file included from ../../../src/kernel/gen_vsite.c:48: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/gen_vsite.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/hackblock.h:41, from ../../../src/kernel/gen_vsite.h:43, from ../../../src/kernel/gen_vsite.c:44: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/kernel/gen_vsite.h:41, from ../../../src/kernel/gen_vsite.c:44: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o topshake.lo ../../../src/kernel/topshake.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/topshake.c -fPIC -DPIC -o .libs/topshake.o ../../../src/kernel/topshake.c: In function 'make_shake': ../../../src/kernel/topshake.c:98:19: warning: unused variable 'b' [-Wunused-variable] int nb,b,i,j,ftype,ftype_a; ^ ../../../src/kernel/topshake.c:98:16: warning: unused variable 'nb' [-Wunused-variable] int nb,b,i,j,ftype,ftype_a; ^~ In file included from ../../../src/kernel/topshake.c:46: At top level: ../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable] static const char *couple_lam[ecouplamNR+1] = { ^~~~~~~~~~ ../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable] static const char *constraints[eshNR+1] = { ^~~~~~~~~~~ In file included from ../../../src/kernel/readir.h:43, from ../../../src/kernel/topshake.c:46: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/readir.h:42, from ../../../src/kernel/topshake.c:46: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xlate.lo ../../../src/kernel/xlate.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/xlate.c -fPIC -DPIC -o .libs/xlate.o make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o toputil.lo ../../../src/kernel/toputil.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/toputil.c -fPIC -DPIC -o .libs/toputil.o ../../../src/kernel/toputil.c:135:13: warning: 'print_nbt' defined but not used [-Wunused-function] static void print_nbt (FILE *out,char *title,t_atomtype at, ^~~~~~~~~ In file included from ../../../src/kernel/topdirs.h:40, from ../../../src/kernel/toputil.c:45: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o glaasje.o ../../../src/kernel/glaasje.c ../../../src/kernel/glaasje.c: In function 'do_glas': ../../../src/kernel/glaasje.c:55:40: warning: unused variable 'r3' [-Wunused-variable] real wd,wdd,zi,fz,dd,d10,d4,d9,d3,r9,r3,sign,cc6,cc12; ^~ ../../../src/kernel/glaasje.c:55:37: warning: unused variable 'r9' [-Wunused-variable] real wd,wdd,zi,fz,dd,d10,d4,d9,d3,r9,r3,sign,cc6,cc12; ^~ In file included from ../../../src/kernel/glaasje.c:44: At top level: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gctio.o ../../../src/kernel/gctio.c In file included from ../../../src/kernel/gctio.c:49: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/kernel/xmdrun.h:50, from ../../../src/kernel/gctio.c:41: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o tpbcmp.lo ../../../src/kernel/tpbcmp.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/tpbcmp.c -fPIC -DPIC -o .libs/tpbcmp.o ../../../src/kernel/tpbcmp.c: In function 'cmp_block': ../../../src/kernel/tpbcmp.c:242:11: warning: unused variable 'k' [-Wunused-variable] int i,j,k; ^ ../../../src/kernel/tpbcmp.c:242:9: warning: unused variable 'j' [-Wunused-variable] int i,j,k; ^ ../../../src/kernel/tpbcmp.c:242:7: warning: unused variable 'i' [-Wunused-variable] int i,j,k; ^ ../../../src/kernel/tpbcmp.c: In function 'cmp_blocka': ../../../src/kernel/tpbcmp.c:252:11: warning: unused variable 'k' [-Wunused-variable] int i,j,k; ^ ../../../src/kernel/tpbcmp.c:252:9: warning: unused variable 'j' [-Wunused-variable] int i,j,k; ^ ../../../src/kernel/tpbcmp.c:252:7: warning: unused variable 'i' [-Wunused-variable] int i,j,k; ^ ../../../src/kernel/tpbcmp.c: In function 'cmp_atom': ../../../src/kernel/tpbcmp.c:265:8: warning: unused variable 'buf' [-Wunused-variable] char buf[256]; ^~~ ../../../src/kernel/tpbcmp.c:264:8: warning: unused variable 'i' [-Wunused-variable] int i; ^ ../../../src/kernel/tpbcmp.c: In function 'cmp_top': ../../../src/kernel/tpbcmp.c:302:7: warning: unused variable 'i' [-Wunused-variable] int i; ^ ../../../src/kernel/tpbcmp.c: In function 'comp_tpx': ../../../src/kernel/tpbcmp.c:567:15: warning: unused variable 'sh' [-Wunused-variable] t_tpxheader sh[2]; ^~ ../../../src/kernel/tpbcmp.c: In function 'comp_enx': ../../../src/kernel/tpbcmp.c:723:38: warning: unused variable 'buf' [-Wunused-variable] char **enm1=NULL,**enm2=NULL,buf[256]; ^~~ ../../../src/kernel/tpbcmp.c:721:36: warning: unused variable 'block' [-Wunused-variable] int in1,in2,nre,nre1,nre2,block; ^~~~~ At top level: ../../../src/kernel/tpbcmp.c:77:13: warning: 'cmp_uc' defined but not used [-Wunused-function] static void cmp_uc(FILE *fp,char *s,int index,unsigned char i1,unsigned char i2) ^~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/kernel/tpbcmp.c:48: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o topio.lo ../../../src/kernel/topio.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/topio.c -fPIC -DPIC -o .libs/topio.o ../../../src/kernel/topio.c: In function 'read_topol': ../../../src/kernel/topio.c:474:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation] else ^~~~ ../../../src/kernel/topio.c:476:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' break; ^~~~~ ../../../src/kernel/topio.c:314:15: warning: unused variable 'block' [-Wunused-variable] t_topology *block=NULL; ^~~~~ In file included from ../../../src/kernel/topio.h:41, from ../../../src/kernel/topio.c:66: At top level: ../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable] static const char *couple_lam[ecouplamNR+1] = { ^~~~~~~~~~ ../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable] static const char *constraints[eshNR+1] = { ^~~~~~~~~~~ In file included from ../../../src/kernel/readir.h:42, from ../../../src/kernel/topio.h:41, from ../../../src/kernel/topio.c:66: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/kernel/vsite_parm.h:41, from ../../../src/kernel/topio.c:59: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ionize.o ../../../src/kernel/ionize.c ../../../src/kernel/ionize.c: In function 'ionize': ../../../src/kernel/ionize.c:735:2: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (bL) ^~ ../../../src/kernel/ionize.c:737:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (ephot == 2) E_lost += 0.5; /* Real energy should be 2.5 KeV*/ ^~ In file included from ../../../src/kernel/ionize.c:48: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/ionize.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o do_gct.o ../../../src/kernel/do_gct.c ../../../src/kernel/do_gct.c: In function 'init_coupling': ../../../src/kernel/do_gct.c:63:19: warning: unused variable 'atj' [-Wunused-variable] int ati,atj; ^~~ ../../../src/kernel/do_gct.c:63:15: warning: unused variable 'ati' [-Wunused-variable] int ati,atj; ^~~ ../../../src/kernel/do_gct.c:62:26: warning: unused variable 'j' [-Wunused-variable] int i,nc,index,j; ^ ../../../src/kernel/do_gct.c:62:20: warning: unused variable 'index' [-Wunused-variable] int i,nc,index,j; ^~~~~ ../../../src/kernel/do_gct.c:62:17: warning: unused variable 'nc' [-Wunused-variable] int i,nc,index,j; ^~ ../../../src/kernel/do_gct.c:62:15: warning: unused variable 'i' [-Wunused-variable] int i,nc,index,j; ^ ../../../src/kernel/do_gct.c: In function 'do_coupling': ../../../src/kernel/do_gct.c:489:15: warning: unused variable 'bTest' [-Wunused-variable] bool bTest,bPrint; ^~~~~ ../../../src/kernel/do_gct.c:487:59: warning: unused variable 'xi12' [-Wunused-variable] real Epol,Eintern,Virial,muabs,xiH=-1,xiS=-1,xi6,xi12; ^~~~ ../../../src/kernel/do_gct.c:487:55: warning: unused variable 'xi6' [-Wunused-variable] real Epol,Eintern,Virial,muabs,xiH=-1,xiS=-1,xi6,xi12; ^~~ ../../../src/kernel/do_gct.c:486:32: warning: unused variable 'ffc' [-Wunused-variable] real ff6,ff12,ffa,ffb,ffc,ffq,factor,dt,mu_ind; ^~~ ../../../src/kernel/do_gct.c:486:28: warning: unused variable 'ffb' [-Wunused-variable] real ff6,ff12,ffa,ffb,ffc,ffq,factor,dt,mu_ind; ^~~ ../../../src/kernel/do_gct.c:486:24: warning: unused variable 'ffa' [-Wunused-variable] real ff6,ff12,ffa,ffb,ffc,ffq,factor,dt,mu_ind; ^~~ ../../../src/kernel/do_gct.c:485:60: warning: unused variable 'rmsf' [-Wunused-variable] real deviation[eoObsNR],prdev[eoObsNR],epot0,dist,rmsf; ^~~~ At top level: ../../../src/kernel/do_gct.c:457:13: warning: 'dump_fm' defined but not used [-Wunused-function] static void dump_fm(FILE *fp,int n,real f[],char *s) ^~~~~~~ In file included from ../../../src/kernel/do_gct.c:50: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../include/pull.h:44, from ../../../include/mdrun.h:56, from ../../../src/kernel/do_gct.c:48: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../include/pull.h:44, from ../../../include/mdrun.h:56, from ../../../src/kernel/do_gct.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/xmdrun.h:50, from ../../../src/kernel/do_gct.c:41: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o mdrun.o ../../../src/kernel/mdrun.c ../../../src/kernel/mdrun.c: In function 'main': ../../../src/kernel/mdrun.c:387:20: warning: unused variable 'fptest' [-Wunused-variable] FILE *fplog,*fptest; ^~~~~~ ../../../src/kernel/mdrun.c:386:12: warning: unused variable 'HaveCheckpoint' [-Wunused-variable] bool HaveCheckpoint; ^~~~~~~~~~~~~~ ../../../src/kernel/mdrun.c:285:15: warning: unused variable 'bPPPME' [-Wunused-variable] static bool bPPPME = FALSE; ^~~~~~ ../../../src/kernel/mdrun.c:284:15: warning: unused variable 'bCart' [-Wunused-variable] static bool bCart = FALSE; ^~~~~ At top level: ../../../src/kernel/mdrun.c:284:15: warning: 'bCart' defined but not used [-Wunused-variable] ../../../src/kernel/mdrun.c:285:15: warning: 'bPPPME' defined but not used [-Wunused-variable] static bool bPPPME = FALSE; ^~~~~~ In file included from ../../../include/pull.h:44, from ../../../include/mdrun.h:56, from ../../../src/kernel/mdrun.c:49: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../include/pull.h:44, from ../../../include/mdrun.h:56, from ../../../src/kernel/mdrun.c:49: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/mdrun.h:50, from ../../../src/kernel/mdrun.c:49: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/kernel/mdrun.c:44: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/kernel/mdrun.c:42: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o repl_ex.o ../../../src/kernel/repl_ex.c ../../../src/kernel/repl_ex.c: In function 'init_replica_exchange': ../../../src/kernel/repl_ex.c:111:8: warning: unused variable 'temp' [-Wunused-variable] real temp,pres; ^~~~ ../../../src/kernel/repl_ex.c: In function 'replica_exchange': ../../../src/kernel/repl_ex.c:560:20: warning: unused variable 'shift' [-Wunused-variable] int exchange=-1,shift; ^~~~~ At top level: ../../../src/kernel/repl_ex.c:544:13: warning: 'write_debug_x' defined but not used [-Wunused-function] static void write_debug_x(t_state *state) ^~~~~~~~~~~~~ In file included from ../../../src/kernel/repl_ex.c:48: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/repl_ex.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/repl_ex.c:46: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xutils.o ../../../src/kernel/xutils.c ../../../src/kernel/xutils.c: In function 'calc_mu_aver': ../../../src/kernel/xutils.c:65:19: warning: variable 'end' set but not used [-Wunused-but-set-variable] int i,start,end; ^~~ ../../../src/kernel/xutils.c: In function 'update_forcefield': ../../../src/kernel/xutils.c:335:10: warning: unused variable 'bDone' [-Wunused-variable] bool bDone; ^~~~~ In file included from ../../../src/kernel/xutils.c:45: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/xutils.c:45: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/xmdrun.h:50, from ../../../src/kernel/xutils.c:44: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o toppush.lo ../../../src/kernel/toppush.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/toppush.c -fPIC -DPIC -o .libs/toppush.o ../../../src/kernel/toppush.c: In function 'push_bt': ../../../src/kernel/toppush.c:573:37: warning: variable 'nrfpB' set but not used [-Wunused-but-set-variable] int i,ft,ftype,nn,nrfp,nrfpA,nrfpB; ^~~~~ ../../../src/kernel/toppush.c: In function 'push_dihedraltype': ../../../src/kernel/toppush.c:661:37: warning: variable 'nrfpB' set but not used [-Wunused-but-set-variable] int i,ft,ftype,nn,nrfp,nrfpA,nrfpB,nral; ^~~~~ ../../../src/kernel/toppush.c: In function 'push_nbt': ../../../src/kernel/toppush.c:778:17: warning: unused variable 'sig6' [-Wunused-variable] real cr[4],sig6; ^~~~ ../../../src/kernel/toppush.c:776:23: warning: unused variable 'atnr' [-Wunused-variable] int i,f,n,ftype,atnr,nrfp; ^~~~ ../../../src/kernel/toppush.c: In function 'push_atom_now': ../../../src/kernel/toppush.c:871:7: warning: unused variable 'j' [-Wunused-variable] int j,resnr_diff=-1; ^ ../../../src/kernel/toppush.c: In function 'push_bond': ../../../src/kernel/toppush.c:1234:18: warning: unused variable 'paramB' [-Wunused-variable] t_param param,paramB,*param_defA,*param_defB; ^~~~~~ In file included from ../../../src/kernel/toppush.c:51: At top level: ../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable] static const char *couple_lam[ecouplamNR+1] = { ^~~~~~~~~~ ../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable] static const char *constraints[eshNR+1] = { ^~~~~~~~~~~ In file included from ../../../src/kernel/readir.h:42, from ../../../src/kernel/toppush.c:51: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/kernel/toputil.h:40, from ../../../src/kernel/toppush.c:48: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ ../../../src/kernel/toppush.c: In function 'push_at': ../../../src/kernel/toppush.c:446:41: warning: '%s' directive writing up to 4095 bytes into a region of size 236 [-Wformat-overflow=] sprintf(errbuf,"Overriding atomtype %s",type); ^~ ~~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../src/kernel/toppush.c:43: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 21 and 4116 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o readir.lo ../../../src/kernel/readir.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/readir.c -fPIC -DPIC -o .libs/readir.o ../../../src/kernel/readir.c: In function 'do_index': ../../../src/kernel/readir.c:1427:38: warning: variable 'nbTS' set but not used [-Wunused-but-set-variable] nSAon,nSAoff,nSAsteps,nQMg,nbOPT,nbTS; ^~~~ ../../../src/kernel/readir.c:1427:32: warning: variable 'nbOPT' set but not used [-Wunused-but-set-variable] nSAon,nSAoff,nSAsteps,nQMg,nbOPT,nbTS; ^~~~~ ../../../src/kernel/readir.c:1427:18: warning: variable 'nSAsteps' set but not used [-Wunused-but-set-variable] nSAon,nSAoff,nSAsteps,nQMg,nbOPT,nbTS; ^~~~~~~~ ../../../src/kernel/readir.c:1427:11: warning: variable 'nSAoff' set but not used [-Wunused-but-set-variable] nSAon,nSAoff,nSAsteps,nQMg,nbOPT,nbTS; ^~~~~~ ../../../src/kernel/readir.c:1427:5: warning: variable 'nSAon' set but not used [-Wunused-but-set-variable] nSAon,nSAoff,nSAsteps,nQMg,nbOPT,nbTS; ^~~~~ ../../../src/kernel/readir.c:1426:61: warning: variable 'nCASelec' set but not used [-Wunused-but-set-variable] int nQMmethod,nQMbasis,nQMcharge,nQMmult,nbSH,nCASorb,nCASelec, ^~~~~~~~ ../../../src/kernel/readir.c:1426:53: warning: variable 'nCASorb' set but not used [-Wunused-but-set-variable] int nQMmethod,nQMbasis,nQMcharge,nQMmult,nbSH,nCASorb,nCASelec, ^~~~~~~ ../../../src/kernel/readir.c:1426:48: warning: variable 'nbSH' set but not used [-Wunused-but-set-variable] int nQMmethod,nQMbasis,nQMcharge,nQMmult,nbSH,nCASorb,nCASelec, ^~~~ ../../../src/kernel/readir.c:1426:40: warning: variable 'nQMmult' set but not used [-Wunused-but-set-variable] int nQMmethod,nQMbasis,nQMcharge,nQMmult,nbSH,nCASorb,nCASelec, ^~~~~~~ ../../../src/kernel/readir.c:1426:30: warning: variable 'nQMcharge' set but not used [-Wunused-but-set-variable] int nQMmethod,nQMbasis,nQMcharge,nQMmult,nbSH,nCASorb,nCASelec, ^~~~~~~~~ ../../../src/kernel/readir.c:1424:11: warning: unused variable 'SAtime' [-Wunused-variable] real SAtime; ^~~~~~ ../../../src/kernel/readir.c: In function 'triple_check': ../../../src/kernel/readir.c:1872:17: warning: unused variable 'npct' [-Wunused-variable] int i,m,nmol,npct; ^~~~ In file included from ../../../src/kernel/readir.c:58: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/readir.c:58: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/readir.h:43, from ../../../src/kernel/readir.c:54: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/readir.c:53: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o luck.o ../../../src/kernel/luck.c In file included from ../../../include/statutil.h:51, from ../../../src/kernel/luck.c:43: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/kernel/luck.c:41: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o protonate.o ../../../src/kernel/protonate.c In file included from ../../../src/kernel/protonate.c:50: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/protonate.c:50: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/hackblock.h:42, from ../../../src/kernel/genhydro.h:41, from ../../../src/kernel/protonate.c:47: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/genhydro.h:40, from ../../../src/kernel/protonate.c:47: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/kernel/protonate.c:45: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/kernel/protonate.c:43: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o vsite_parm.lo ../../../src/kernel/vsite_parm.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/vsite_parm.c -fPIC -DPIC -o .libs/vsite_parm.o ../../../src/kernel/vsite_parm.c: In function 'clean_vsite_bonds': ../../../src/kernel/vsite_parm.c:862:62: warning: unused variable 'vsitetype' [-Wunused-variable] int ftype,i,j,parnr,k,l,m,n,nvsite,nOut,kept_i,vsnral,vsitetype; ^~~~~~~~~ ../../../src/kernel/vsite_parm.c:862:30: warning: unused variable 'l' [-Wunused-variable] int ftype,i,j,parnr,k,l,m,n,nvsite,nOut,kept_i,vsnral,vsitetype; ^ ../../../src/kernel/vsite_parm.c:862:22: warning: unused variable 'parnr' [-Wunused-variable] int ftype,i,j,parnr,k,l,m,n,nvsite,nOut,kept_i,vsnral,vsitetype; ^~~~~ ../../../src/kernel/vsite_parm.c: In function 'clean_vsite_angles': ../../../src/kernel/vsite_parm.c:1035:51: warning: unused variable 'vsitetype' [-Wunused-variable] int i,j,parnr,k,l,m,n,nvsite,kept_i,vsnral,vsitetype; ^~~~~~~~~ ../../../src/kernel/vsite_parm.c:1035:24: warning: unused variable 'l' [-Wunused-variable] int i,j,parnr,k,l,m,n,nvsite,kept_i,vsnral,vsitetype; ^ ../../../src/kernel/vsite_parm.c:1035:16: warning: unused variable 'parnr' [-Wunused-variable] int i,j,parnr,k,l,m,n,nvsite,kept_i,vsnral,vsitetype; ^~~~~ ../../../src/kernel/vsite_parm.c: In function 'clean_vsite_dihs': ../../../src/kernel/vsite_parm.c:1130:28: warning: unused variable 'l' [-Wunused-variable] int ftype,i,parnr,k,l,m,n,nvsite,kept_i,vsnral; ^ ../../../src/kernel/vsite_parm.c:1130:20: warning: unused variable 'parnr' [-Wunused-variable] int ftype,i,parnr,k,l,m,n,nvsite,kept_i,vsnral; ^~~~~ ../../../src/kernel/vsite_parm.c:1130:12: warning: unused variable 'ftype' [-Wunused-variable] int ftype,i,parnr,k,l,m,n,nvsite,kept_i,vsnral; ^~~~~ In file included from ../../../src/kernel/vsite_parm.c:47: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/vsite_parm.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/hackblock.h:41, from ../../../src/kernel/resall.h:41, from ../../../src/kernel/vsite_parm.c:45: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/kernel/vsite_parm.h:41, from ../../../src/kernel/vsite_parm.c:43: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o genalg.o ../../../src/kernel/genalg.c ../../../src/kernel/genalg.c: In function 'update_ga': ../../../src/kernel/genalg.c:197:12: warning: unused variable 'j' [-Wunused-variable] int i, j, L, n; /* counting variables */ ^ In file included from ../../../src/kernel/genalg.c:75: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/genalg.c:75: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o tpbconv.o ../../../src/kernel/tpbconv.c ../../../src/kernel/tpbconv.c: In function 'main': ../../../src/kernel/tpbconv.c:365:7: warning: unused variable 'nerror' [-Wunused-variable] int nerror = 0; ^~~~~~ ../../../src/kernel/tpbconv.c:325:17: warning: unused variable 'gopts' [-Wunused-variable] t_gromppopts *gopts; ^~~~~ ../../../src/kernel/tpbconv.c:324:21: warning: unused variable 'irnew' [-Wunused-variable] t_inputrec *ir,*irnew=NULL; ^~~~~ ../../../src/kernel/tpbconv.c:318:33: warning: unused variable 'nsteps_org' [-Wunused-variable] int i,frame,run_step,nsteps_org; ^~~~~~~~~~ In file included from ../../../src/kernel/tpbconv.c:56: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/tpbconv.c:56: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/tpbconv.c:54: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/kernel/tpbconv.c:52: ../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable] static const char *couple_lam[ecouplamNR+1] = { ^~~~~~~~~~ ../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable] static const char *constraints[eshNR+1] = { ^~~~~~~~~~~ In file included from ../../../src/kernel/readir.h:43, from ../../../src/kernel/tpbconv.c:52: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/readir.h:42, from ../../../src/kernel/tpbconv.c:52: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmxdump.o ../../../src/kernel/gmxdump.c ../../../src/kernel/gmxdump.c: In function 'list_tpx': ../../../src/kernel/gmxdump.c:146:16: warning: left-hand operand of comma expression has no effect [-Wunused-value] if (state,tpx.bF) { ^ ../../../src/kernel/gmxdump.c:99:20: warning: unused variable 'fp' [-Wunused-variable] int step,fp,indent,i,j,**gcount,atot; ^~ ../../../src/kernel/gmxdump.c: In function 'list_ene': ../../../src/kernel/gmxdump.c:314:17: warning: unused variable 'ndr' [-Wunused-variable] int in,ndr; ^~~ At top level: ../../../src/kernel/gmxdump.c:65:13: warning: 'dump_top' defined but not used [-Wunused-function] static void dump_top(FILE *fp,t_topology *top,char *tpr) ^~~~~~~~ In file included from ../../../src/kernel/gmxdump.c:47: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/kernel/gmxdump.c:46: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nm2type.o ../../../src/kernel/nm2type.c ../../../src/kernel/nm2type.c: In function 'rd_nm2type': ../../../src/kernel/nm2type.c:72:20: warning: unused variable 'blen' [-Wunused-variable] double qq,mm,*blen; ^~~~ ../../../src/kernel/nm2type.c: In function 'nm2type': ../../../src/kernel/nm2type.c:160:38: warning: unused variable 'quality' [-Wunused-variable] int *bbb,*n_mask,*m_mask,**match,**quality; ^~~~~~~ In file included from ../../../src/kernel/hackblock.h:41, from ../../../src/kernel/pdb2top.h:43, from ../../../src/kernel/nm2type.c:59: At top level: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/kernel/toputil.h:40, from ../../../src/kernel/toppush.h:41, from ../../../src/kernel/nm2type.c:58: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/nm2type.c:52: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/kernel/nm2type.c:51: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/kernel/nm2type.c:44: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/kernel/nm2type.c:42: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o x2top.o ../../../src/kernel/x2top.c ../../../src/kernel/x2top.c: In function 'set_cgnr': ../../../src/kernel/x2top.c:178:15: warning: unused variable 'mt' [-Wunused-variable] double qt=0,mt=0; ^~ ../../../src/kernel/x2top.c: In function 'set_force_const': ../../../src/kernel/x2top.c:255:7: warning: unused variable 'i' [-Wunused-variable] int i; ^ ../../../src/kernel/x2top.c: In function 'main': ../../../src/kernel/x2top.c:419:15: warning: unused variable 'scale' [-Wunused-variable] static real scale = 1.1, kb = 4e5,kt = 400,kp = 5; ^~~~~ ../../../src/kernel/x2top.c:411:14: warning: unused variable 'cutoff' [-Wunused-variable] real cutoff,qtot,mtot; ^~~~~~ ../../../src/kernel/x2top.c:408:24: warning: unused variable 'ndih' [-Wunused-variable] int i,j,k,l,m,ndih; ^~~~ ../../../src/kernel/x2top.c:408:22: warning: unused variable 'm' [-Wunused-variable] int i,j,k,l,m,ndih; ^ ../../../src/kernel/x2top.c:408:20: warning: unused variable 'l' [-Wunused-variable] int i,j,k,l,m,ndih; ^ ../../../src/kernel/x2top.c:408:18: warning: unused variable 'k' [-Wunused-variable] int i,j,k,l,m,ndih; ^ ../../../src/kernel/x2top.c:408:16: warning: unused variable 'j' [-Wunused-variable] int i,j,k,l,m,ndih; ^ ../../../src/kernel/x2top.c:408:14: warning: unused variable 'i' [-Wunused-variable] int i,j,k,l,m,ndih; ^ ../../../src/kernel/x2top.c:407:14: warning: unused variable 'nres' [-Wunused-variable] int nres; /* number of molecules? */ ^~~~ At top level: ../../../src/kernel/x2top.c:419:15: warning: 'scale' defined but not used [-Wunused-variable] static real scale = 1.1, kb = 4e5,kt = 400,kp = 5; ^~~~~ ../../../src/kernel/x2top.c:117:12: warning: 'get_atype' defined but not used [-Wunused-function] static int get_atype(char *nm) ^~~~~~~~~ ../../../src/kernel/x2top.c:80:13: warning: 'set_x_blen' defined but not used [-Wunused-function] static real set_x_blen(real scale) ^~~~~~~~~~ In file included from ../../../src/kernel/topio.h:41, from ../../../src/kernel/gen_ad.h:42, from ../../../src/kernel/x2top.c:60: ../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable] static const char *couple_lam[ecouplamNR+1] = { ^~~~~~~~~~ ../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable] static const char *constraints[eshNR+1] = { ^~~~~~~~~~~ In file included from ../../../src/kernel/hackblock.h:41, from ../../../src/kernel/pdb2top.h:43, from ../../../src/kernel/x2top.c:59: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/kernel/toputil.h:40, from ../../../src/kernel/toppush.h:41, from ../../../src/kernel/x2top.c:58: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/x2top.c:52: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/kernel/x2top.c:51: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/kernel/x2top.c:42: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/kernel/x2top.c:40: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmxcheck.o ../../../src/kernel/gmxcheck.c ../../../src/kernel/gmxcheck.c: In function 'tpx2system': ../../../src/kernel/gmxcheck.c:90:7: warning: unused variable 'i' [-Wunused-variable] int i,nmol,nvsite=0; ^ ../../../src/kernel/gmxcheck.c: In function 'tpx2methods': ../../../src/kernel/gmxcheck.c:140:15: warning: unused variable 'i' [-Wunused-variable] int i,step; ^ ../../../src/kernel/gmxcheck.c:136:15: warning: unused variable 'sh' [-Wunused-variable] t_tpxheader sh; ^~ ../../../src/kernel/gmxcheck.c: In function 'chk_bonds': ../../../src/kernel/gmxcheck.c:202:26: warning: variable 'devtot' set but not used [-Wunused-but-set-variable] real b0,blen,deviation,devtot; ^~~~~~ ../../../src/kernel/gmxcheck.c:201:14: warning: unused variable 'i' [-Wunused-variable] int ftype,i,k,ai,aj,type; ^ ../../../src/kernel/gmxcheck.c: In function 'chk_trj': ../../../src/kernel/gmxcheck.c:252:35: warning: unused variable 'bOK' [-Wunused-variable] bool bShowTimestep=TRUE,bOK,newline=FALSE; ^~~ ../../../src/kernel/gmxcheck.c:251:40: warning: unused variable 'prec' [-Wunused-variable] real rdum,t,tt,old_t1,old_t2,prec; ^~~~ ../../../src/kernel/gmxcheck.c:251:23: warning: unused variable 'tt' [-Wunused-variable] real rdum,t,tt,old_t1,old_t2,prec; ^~ ../../../src/kernel/gmxcheck.c:251:16: warning: unused variable 'rdum' [-Wunused-variable] real rdum,t,tt,old_t1,old_t2,prec; ^~~~ ../../../src/kernel/gmxcheck.c:250:16: warning: variable 'fpos' set but not used [-Wunused-but-set-variable] off_t fpos; ^~~~ ../../../src/kernel/gmxcheck.c: In function 'chk_ndx': ../../../src/kernel/gmxcheck.c:526:10: warning: unused variable 'j' [-Wunused-variable] int i,j; ^ ../../../src/kernel/gmxcheck.c: In function 'chk_enx': ../../../src/kernel/gmxcheck.c:550:25: warning: unused variable 'ndr' [-Wunused-variable] int in,nre,fnr,ndr; ^~~ In file included from ../../../src/kernel/gmxcheck.c:57: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/gmxcheck.c:57: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/gmxcheck.c:48: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/kernel/gmxcheck.c:47: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o libgmxpreprocess_mpi.la add_par.lo compute_io.lo convparm.lo gen_ad.lo gen_vsite.lo genhydro.lo gmxcpp.lo gpp_atomtype.lo gpp_bond_atomtype.lo h_db.lo hackblock.lo hizzie.lo pdb2top.lo pgutil.lo readir.lo readpull.lo resall.lo sorting.lo specbond.lo ter_db.lo tomorse.lo topdirs.lo topexcl.lo topio.lo toppush.lo topshake.lo toputil.lo tpbcmp.lo vsite_parm.lo xlate.lo -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath ar cru .libs/libgmxpreprocess_mpi.a .libs/add_par.o .libs/compute_io.o .libs/convparm.o .libs/gen_ad.o .libs/gen_vsite.o .libs/genhydro.o .libs/gmxcpp.o .libs/gpp_atomtype.o .libs/gpp_bond_atomtype.o .libs/h_db.o .libs/hackblock.o .libs/hizzie.o .libs/pdb2top.o .libs/pgutil.o .libs/readir.o .libs/readpull.o .libs/resall.o .libs/sorting.o .libs/specbond.o .libs/ter_db.o .libs/tomorse.o .libs/topdirs.o .libs/topexcl.o .libs/topio.o .libs/toppush.o .libs/topshake.o .libs/toputil.o .libs/tpbcmp.o .libs/vsite_parm.o .libs/xlate.o ranlib .libs/libgmxpreprocess_mpi.a creating libgmxpreprocess_mpi.la (cd .libs && rm -f libgmxpreprocess_mpi.la && ln -s ../libgmxpreprocess_mpi.la libgmxpreprocess_mpi.la) make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pdb2gmx.o ../../../src/kernel/pdb2gmx.c ../../../src/kernel/pdb2gmx.c:149:20: warning: 'get_cystp' defined but not used [-Wunused-function] static const char *get_cystp(int resnr) ^~~~~~~~~ In file included from ../../../src/kernel/toputil.h:40, from ../../../src/kernel/pdb2gmx.c:55: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/pdb2gmx.c:54: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/kernel/pdb2gmx.c:51: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/kernel/pdb2gmx.c:50: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/pdb2gmx.c:50: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/pdb2gmx.c:46: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ ../../../src/kernel/pdb2gmx.c: In function 'main': ../../../src/kernel/pdb2gmx.c:783:18: warning: '.rtp' directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(rtp,"%s.rtp",forcefield); ^~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../src/kernel/pdb2gmx.c:42: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 5 and 4100 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../src/kernel/pdb2gmx.c:1162:31: warning: '%s' directive writing up to 4095 bytes into a region of size 4089 [-Wformat-overflow=] sprintf(molname,"Protein%s",suffix); ^~ ~~~~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../src/kernel/pdb2gmx.c:42: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 8 and 4103 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../src/kernel/pdb2gmx.c:1176:22: warning: '_pr.itp' directive writing 7 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(posre_fn,"%s_pr.itp",buf_fn); ^~~~~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../src/kernel/pdb2gmx.c:42: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 8 and 4103 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o md.o ../../../src/kernel/md.c ../../../src/kernel/md.c: In function 'mdrunner': ../../../src/kernel/md.c:140:15: warning: unused variable 'gro' [-Wunused-variable] char *gro; ^~~ ../../../src/kernel/md.c:139:45: warning: unused variable 'nalloc' [-Wunused-variable] int i,m,nChargePerturbed=-1,status,nalloc; ^~~~~~ ../../../src/kernel/md.c:139:16: warning: unused variable 'm' [-Wunused-variable] int i,m,nChargePerturbed=-1,status,nalloc; ^ ../../../src/kernel/md.c:139:14: warning: unused variable 'i' [-Wunused-variable] int i,m,nChargePerturbed=-1,status,nalloc; ^ ../../../src/kernel/md.c:128:20: warning: unused variable 'tmpr2' [-Wunused-variable] real tmpr1,tmpr2; ^~~~~ ../../../src/kernel/md.c:128:14: warning: unused variable 'tmpr1' [-Wunused-variable] real tmpr1,tmpr2; ^~~~~ ../../../src/kernel/md.c: In function 'do_md': ../../../src/kernel/md.c:533:16: warning: unused variable 'grpname' [-Wunused-variable] char *grpname; ^~~~~~~ ../../../src/kernel/md.c:525:15: warning: unused variable 'timestep' [-Wunused-variable] real timestep=0; ^~~~~~~~ In file included from ../../../include/pppm.h:46, from ../../../src/kernel/md.c:69: At top level: ../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function] static t_complex cdiv(t_complex teller,t_complex noemer) ^~~~ ../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function] static t_complex csub(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function] static t_complex cadd(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function] static t_complex rcexp(real r) ^~~~~ ../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable] static t_complex cnul = { 0.0, 0.0 }; ^~~~ In file included from ../../../include/statutil.h:51, from ../../../src/kernel/md.c:46: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/kernel/md.c:45: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/md.c:45: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o gmxdump gmxdump.o libgmxpreprocess_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/gmxdump gmxdump.o ./.libs/libgmxpreprocess_mpi.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath creating gmxdump make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o gmxcheck gmxcheck.o libgmxpreprocess_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/gmxcheck gmxcheck.o ./.libs/libgmxpreprocess_mpi.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath creating gmxcheck make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o protonate protonate.o libgmxpreprocess_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/protonate protonate.o ./.libs/libgmxpreprocess_mpi.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath creating protonate make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o grompp grompp.o libgmxpreprocess_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/grompp grompp.o ./.libs/libgmxpreprocess_mpi.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath creating grompp make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o tpbconv tpbconv.o libgmxpreprocess_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/tpbconv tpbconv.o ./.libs/libgmxpreprocess_mpi.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath creating tpbconv make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o luck luck.o libgmxpreprocess_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/luck luck.o ./.libs/libgmxpreprocess_mpi.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath creating luck make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o x2top x2top.o nm2type.o libgmxpreprocess_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/x2top x2top.o nm2type.o ./.libs/libgmxpreprocess_mpi.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath creating x2top make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o mdrun glaasje.o gctio.o ionize.o do_gct.o repl_ex.o xutils.o md.o mdrun.o genalg.o libgmxpreprocess_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/mdrun glaasje.o gctio.o ionize.o do_gct.o repl_ex.o xutils.o md.o mdrun.o genalg.o ./.libs/libgmxpreprocess_mpi.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath creating mdrun make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o pdb2gmx pdb2gmx.o libgmxpreprocess_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/pdb2gmx pdb2gmx.o ./.libs/libgmxpreprocess_mpi.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath creating pdb2gmx make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' Making all in tools make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o polynomials.lo ../../../src/tools/polynomials.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/polynomials.c -fPIC -DPIC -o .libs/polynomials.o In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/tools/polynomials.c:44: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pp2shift.lo ../../../src/tools/pp2shift.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/pp2shift.c -fPIC -DPIC -o .libs/pp2shift.o In file included from ../../../src/tools/pp2shift.c:50: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/pp2shift.c:47: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o do_dssp.o ../../../src/tools/do_dssp.c ../../../src/tools/do_dssp.c: In function 'main': ../../../src/tools/do_dssp.c:347:16: warning: unused variable 'j' [-Wunused-variable] int i,j,natoms,nframe=0; ^ In file included from ../../../src/tools/do_dssp.c:49: At top level: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/tools/do_dssp.c:48: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/do_dssp.c:47: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlist.lo ../../../src/tools/dlist.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/dlist.c -fPIC -DPIC -o .libs/dlist.o In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/tools/dlist.c:44: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o eigio.lo ../../../src/tools/eigio.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/eigio.c -fPIC -DPIC -o .libs/eigio.o In file included from ../../../src/tools/eigio.c:41: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/eigio.c:41: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o expfit.lo ../../../src/tools/expfit.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/expfit.c -fPIC -DPIC -o .libs/expfit.o In file included from ../../../src/tools/expfit.c:49: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/expfit.c:49: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/tools/expfit.c:48: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o lsq.lo ../../../src/tools/lsq.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/lsq.c -fPIC -DPIC -o .libs/lsq.o In file included from ../../../src/tools/lsq.c:42: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/lsq.c:42: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/tools/lsq.c:41: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o levenmar.lo ../../../src/tools/levenmar.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/levenmar.c -fPIC -DPIC -o .libs/levenmar.o ../../../src/tools/levenmar.c:224:13: warning: 'free_convert_matrix' defined but not used [-Wunused-function] static void free_convert_matrix(real **b, int nrl) ^~~~~~~~~~~~~~~~~~~ ../../../src/tools/levenmar.c:208:15: warning: 'convert_matrix' defined but not used [-Wunused-function] static real **convert_matrix(real *a, int nrl, int nrh, int ncl, int nch) ^~~~~~~~~~~~~~ ../../../src/tools/levenmar.c:201:13: warning: 'free_submatrix' defined but not used [-Wunused-function] static void free_submatrix(real **b, int nrl) ^~~~~~~~~~~~~~ ../../../src/tools/levenmar.c:191:13: warning: 'free_imatrix' defined but not used [-Wunused-function] static void free_imatrix(int **m, int nrl, int nrh, int ncl) ^~~~~~~~~~~~ ../../../src/tools/levenmar.c:183:13: warning: 'free_dmatrix' defined but not used [-Wunused-function] static void free_dmatrix(double **m, int nrl, int nrh, int ncl) ^~~~~~~~~~~~ ../../../src/tools/levenmar.c:168:13: warning: 'free_dvector' defined but not used [-Wunused-function] static void free_dvector(int *v, int nl) ^~~~~~~~~~~~ ../../../src/tools/levenmar.c:141:15: warning: 'submatrix' defined but not used [-Wunused-function] static real **submatrix(real **a, int oldrl, int oldrh, int oldcl, ^~~~~~~~~ ../../../src/tools/levenmar.c:123:14: warning: 'imatrix1' defined but not used [-Wunused-function] static int **imatrix1(int nrl, int nrh, int ncl, int nch) ^~~~~~~~ ../../../src/tools/levenmar.c:106:17: warning: 'dmatrix' defined but not used [-Wunused-function] static double **dmatrix(int nrl, int nrh, int ncl, int nch) ^~~~~~~ ../../../src/tools/levenmar.c:78:16: warning: 'dvector' defined but not used [-Wunused-function] static double *dvector(int nl, int nh) ^~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o cmat.lo ../../../src/tools/cmat.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/cmat.c -fPIC -DPIC -o .libs/cmat.o make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o eigensolver.lo ../../../src/tools/eigensolver.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/eigensolver.c -fPIC -DPIC -o .libs/eigensolver.o ../../../src/tools/eigensolver.c: In function 'eigensolver': ../../../src/tools/eigensolver.c:65:16: warning: unused variable 'iu' [-Wunused-variable] int il,iu,m,iw0,info; ^~ ../../../src/tools/eigensolver.c:65:13: warning: unused variable 'il' [-Wunused-variable] int il,iu,m,iw0,info; ^~ ../../../src/tools/eigensolver.c: In function 'sparse_eigensolver': ../../../src/tools/eigensolver.c:296:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(i=0;i<11;i++) ^~~ ../../../src/tools/eigensolver.c:299:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' iparam[0] = 1; /* Don't use explicit shifts */ ^~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o anadih.lo ../../../src/tools/anadih.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/anadih.c -fPIC -DPIC -o .libs/anadih.o In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/tools/anadih.c:51: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/anadih.c:50: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/anadih.c:50: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o autocorr.lo ../../../src/tools/autocorr.c mkdir .libs mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/autocorr.c -fPIC -DPIC -o .libs/autocorr.o In file included from ../../../include/gmx_fft.h:41, from ../../../src/tools/correl.h:40, from ../../../src/tools/autocorr.c:53: ../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function] static t_complex cdiv(t_complex teller,t_complex noemer) ^~~~ ../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function] static t_complex csub(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function] static t_complex cadd(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function] static t_complex rcexp(real r) ^~~~~ ../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable] static t_complex cnul = { 0.0, 0.0 }; ^~~~ In file included from ../../../src/tools/autocorr.c:51: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/autocorr.c:51: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/tools/autocorr.c:48: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o fitahx.lo ../../../src/tools/fitahx.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/fitahx.c -fPIC -DPIC -o .libs/fitahx.o In file included from ../../../src/tools/fitahx.c:41: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/fitahx.c:41: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_bond.lo ../../../src/tools/gmx_bond.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_bond.c -fPIC -DPIC -o .libs/gmx_bond.o In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_bond.c:51: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_bond.c:48: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_bond.c:45: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_bond.c:45: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o hxprops.lo ../../../src/tools/hxprops.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/hxprops.c -fPIC -DPIC -o .libs/hxprops.o ../../../src/tools/hxprops.c: In function 'ellipticity': ../../../src/tools/hxprops.c:85:14: warning: unused variable 'Xi' [-Wunused-variable] const real Xi=1.0; ^~ In file included from ../../../src/tools/hxprops.c:46: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/hxprops.c:46: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_angle.lo ../../../src/tools/gmx_angle.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_angle.c -fPIC -DPIC -o .libs/gmx_angle.o ../../../src/tools/gmx_angle.c: In function 'gmx_angle': ../../../src/tools/gmx_angle.c:147:14: warning: unused variable 'buf' [-Wunused-variable] char buf[80]; ^~~ ../../../src/tools/gmx_angle.c:143:38: warning: unused variable 'fraction' [-Wunused-variable] real t,aa,aver,aver2,aversig,fraction; /* fraction trans dihedrals */ ^~~~~~~~ ../../../src/tools/gmx_angle.c:143:16: warning: unused variable 'aa' [-Wunused-variable] real t,aa,aver,aver2,aversig,fraction; /* fraction trans dihedrals */ ^~ ../../../src/tools/gmx_angle.c:143:14: warning: unused variable 't' [-Wunused-variable] real t,aa,aver,aver2,aversig,fraction; /* fraction trans dihedrals */ ^ ../../../src/tools/gmx_angle.c:138:55: warning: unused variable 'angind' [-Wunused-variable] int i,j,total,nangles,natoms,nat2,first,last,angind; ^~~~~~ ../../../src/tools/gmx_angle.c:138:39: warning: unused variable 'nat2' [-Wunused-variable] int i,j,total,nangles,natoms,nat2,first,last,angind; ^~~~ ../../../src/tools/gmx_angle.c:138:32: warning: unused variable 'natoms' [-Wunused-variable] int i,j,total,nangles,natoms,nat2,first,last,angind; ^~~~~~ ../../../src/tools/gmx_angle.c:138:18: warning: unused variable 'total' [-Wunused-variable] int i,j,total,nangles,natoms,nat2,first,last,angind; ^~~~~ ../../../src/tools/gmx_angle.c:135:21: warning: unused variable 'Jc' [-Wunused-variable] real maxang,Jc,S2,norm_fac,maxstat; ^~ ../../../src/tools/gmx_angle.c:132:14: warning: unused variable 'status' [-Wunused-variable] int status,isize; ^~~~~~ ../../../src/tools/gmx_angle.c:131:14: warning: unused variable 'tmp' [-Wunused-variable] real tmp,dt; ^~~ In file included from ../../../src/tools/gmx_angle.c:49: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_angle.c:49: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/tools/gmx_angle.c:48: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_angle.c:47: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_bundle.lo ../../../src/tools/gmx_bundle.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_bundle.c -fPIC -DPIC -o .libs/gmx_bundle.o ../../../src/tools/gmx_bundle.c: In function 'dump_axes': ../../../src/tools/gmx_bundle.c:141:17: warning: unused variable 'end' [-Wunused-variable] int i,end; ^~~ ../../../src/tools/gmx_bundle.c: In function 'gmx_bundle': ../../../src/tools/gmx_bundle.c:210:16: warning: unused variable 'j' [-Wunused-variable] int i,j,gnx[MAX_ENDS]; ^ ../../../src/tools/gmx_bundle.c:208:14: warning: unused variable 'natoms' [-Wunused-variable] int natoms; ^~~~~~ ../../../src/tools/gmx_bundle.c:198:15: warning: unused variable 'out' [-Wunused-variable] FILE *out,*flen,*fdist,*fz,*ftilt,*ftiltr,*ftiltl; ^~~ In file included from ../../../src/tools/gmx_bundle.c:48: At top level: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_bundle.c:47: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_bundle.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_bundle.c:42: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_analyze.lo ../../../src/tools/gmx_analyze.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_analyze.c -fPIC -DPIC -o .libs/gmx_analyze.o ../../../src/tools/gmx_analyze.c: In function 'luzar_correl': ../../../src/tools/gmx_analyze.c:514:8: warning: unused variable 'weight' [-Wunused-variable] real weight,d2; ^~~~~~ ../../../src/tools/gmx_analyze.c:512:14: warning: unused variable 'tol' [-Wunused-variable] const real tol = 1e-8; ^~~ ../../../src/tools/gmx_analyze.c: In function 'gmx_analyze': ../../../src/tools/gmx_analyze.c:744:63: warning: unused variable 'bLuzarError' [-Wunused-variable] static bool bIntegrate=FALSE,bRegression=FALSE,bLuzar=FALSE,bLuzarError=FALSE; ^~~~~~~~~~~ At top level: ../../../src/tools/gmx_analyze.c:744:63: warning: 'bLuzarError' defined but not used [-Wunused-variable] ../../../src/tools/gmx_analyze.c:273:13: warning: 'anal_ee' defined but not used [-Wunused-function] static real anal_ee(real *parm,real T,real t) ^~~~~~~ In file included from ../../../src/tools/gmx_analyze.c:48: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_analyze.c:47: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_analyze.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_analyze.c:41: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nsc.lo ../../../src/tools/nsc.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/nsc.c -fPIC -DPIC -o .libs/nsc.o ../../../src/tools/nsc.c: In function 'make_unsp': ../../../src/tools/nsc.c:446:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (xpunsp) free(xpunsp); if (ico_wk) free(ico_wk); ^~ ../../../src/tools/nsc.c:446:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (xpunsp) free(xpunsp); if (ico_wk) free(ico_wk); ^~ ../../../src/tools/nsc.c: In function 'nsc_dclm_pbc': ../../../src/tools/nsc.c:652:21: warning: unused variable 'm' [-Wunused-variable] int ix,iy,iz,m; ^ ../../../src/tools/nsc.c:551:16: warning: unused variable 'jat_xx' [-Wunused-variable] int iat_xx,jat_xx; ^~~~~~ In file included from ../../../src/tools/nsc.c:48: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/nsc.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_covar.lo ../../../src/tools/gmx_covar.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_covar.c -fPIC -DPIC -o .libs/gmx_covar.o ../../../src/tools/gmx_covar.c: In function 'gmx_covar': ../../../src/tools/gmx_covar.c:120:30: warning: unused variable 'count' [-Wunused-variable] int natoms,nat,ndim,count,nframes0,nframes,nlevels; ^~~~~ ../../../src/tools/gmx_covar.c:119:24: warning: unused variable 'step' [-Wunused-variable] int ntopatoms,step; ^~~~ ../../../src/tools/gmx_covar.c:119:14: warning: unused variable 'ntopatoms' [-Wunused-variable] int ntopatoms,step; ^~~~~~~~~ ../../../src/tools/gmx_covar.c:109:21: warning: unused variable 'trjout' [-Wunused-variable] int status,trjout; ^~~~~~ In file included from ../../../src/tools/gmx_covar.c:50: At top level: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_covar.c:48: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_covar.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_covar.c:43: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_confrms.lo ../../../src/tools/gmx_confrms.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_confrms.c -fPIC -DPIC -o .libs/gmx_confrms.o ../../../src/tools/gmx_confrms.c: In function 'find_matching_names': ../../../src/tools/gmx_confrms.c:252:35: warning: unused variable 'atnm2' [-Wunused-variable] char *resnm1, *resnm2, *atnm1, *atnm2; ^~~~~ ../../../src/tools/gmx_confrms.c:252:27: warning: unused variable 'atnm1' [-Wunused-variable] char *resnm1, *resnm2, *atnm1, *atnm2; ^~~~~ ../../../src/tools/gmx_confrms.c:252:18: warning: unused variable 'resnm2' [-Wunused-variable] char *resnm1, *resnm2, *atnm1, *atnm2; ^~~~~~ ../../../src/tools/gmx_confrms.c:252:9: warning: unused variable 'resnm1' [-Wunused-variable] char *resnm1, *resnm2, *atnm1, *atnm2; ^~~~~~ ../../../src/tools/gmx_confrms.c:249:7: warning: unused variable 'r' [-Wunused-variable] int r,rnr1, rnr2, prnr1, prnr2; ^ ../../../src/tools/gmx_confrms.c:247:7: warning: unused variable 'i' [-Wunused-variable] int i, i1, i2, ii1, ii2, m1, m2; ^ ../../../src/tools/gmx_confrms.c: In function 'gmx_confrms': ../../../src/tools/gmx_confrms.c:407:17: warning: unused variable 'tmas2' [-Wunused-variable] real tmas1,tmas2; ^~~~~ ../../../src/tools/gmx_confrms.c:407:11: warning: unused variable 'tmas1' [-Wunused-variable] real tmas1,tmas2; ^~~~~ ../../../src/tools/gmx_confrms.c:404:13: warning: unused variable 'j' [-Wunused-variable] int i,j,m; ^ In file included from ../../../src/tools/gmx_confrms.c:56: At top level: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/tools/gmx_confrms.c:50: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_confrms.c:50: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_confrms.c:47: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_confrms.c:46: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_anaeig.lo ../../../src/tools/gmx_anaeig.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_anaeig.c -fPIC -DPIC -o .libs/gmx_anaeig.o ../../../src/tools/gmx_anaeig.c: In function 'calc_entropy_schlitter': ../../../src/tools/gmx_anaeig.c:98:10: warning: unused variable 'buf' [-Wunused-variable] char buf[256]; ^~~ ../../../src/tools/gmx_anaeig.c:97:16: warning: unused variable 'm' [-Wunused-variable] int i,j,k,m; ^ ../../../src/tools/gmx_anaeig.c:97:14: warning: unused variable 'k' [-Wunused-variable] int i,j,k,m; ^ ../../../src/tools/gmx_anaeig.c:97:12: warning: unused variable 'j' [-Wunused-variable] int i,j,k,m; ^ ../../../src/tools/gmx_anaeig.c:96:11: warning: unused variable 'indx' [-Wunused-variable] int *indx; ^~~~ ../../../src/tools/gmx_anaeig.c: In function 'compare': ../../../src/tools/gmx_anaeig.c:224:12: warning: unused variable 'nrow' [-Wunused-variable] int n,nrow; ^~~~ ../../../src/tools/gmx_anaeig.c: In function 'rmsf': ../../../src/tools/gmx_anaeig.c:692:9: warning: unused variable 'nrow' [-Wunused-variable] int nrow,g,v,i; ^~~~ ../../../src/tools/gmx_anaeig.c: In function 'gmx_anaeig': ../../../src/tools/gmx_anaeig.c:1015:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (i!=natoms) ^~ ../../../src/tools/gmx_anaeig.c:1017:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' printf("\n"); ^~~~~~ ../../../src/tools/gmx_anaeig.c:835:21: warning: unused variable 'step' [-Wunused-variable] int natoms,step; ^~~~ ../../../src/tools/gmx_anaeig.c:834:42: warning: unused variable 'lambda' [-Wunused-variable] real xid,totmass,*sqrtm,*w_rls,t,lambda; ^~~~~~ ../../../src/tools/gmx_anaeig.c:834:14: warning: unused variable 'xid' [-Wunused-variable] real xid,totmass,*sqrtm,*w_rls,t,lambda; ^~~ ../../../src/tools/gmx_anaeig.c:832:18: warning: unused variable 'xread' [-Wunused-variable] rvec *x,*xread,*xav1,*xav2,**eigvec1=NULL,**eigvec2=NULL; ^~~~~ ../../../src/tools/gmx_anaeig.c:832:15: warning: unused variable 'x' [-Wunused-variable] rvec *x,*xread,*xav1,*xav2,**eigvec1=NULL,**eigvec2=NULL; ^ ../../../src/tools/gmx_anaeig.c:825:21: warning: unused variable 'trjout' [-Wunused-variable] int status,trjout; ^~~~~~ ../../../src/tools/gmx_anaeig.c:825:14: warning: unused variable 'status' [-Wunused-variable] int status,trjout; ^~~~~~ ../../../src/tools/gmx_anaeig.c:824:15: warning: unused variable 'out' [-Wunused-variable] FILE *out; ^~~ In file included from ../../../src/tools/gmx_anaeig.c:53: At top level: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ In file included from ../../../src/tools/gmx_anaeig.c:49: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_anaeig.c:47: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_anaeig.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_anaeig.c:41: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_density.lo ../../../src/tools/gmx_density.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_density.c -fPIC -DPIC -o .libs/gmx_density.o ../../../src/tools/gmx_density.c: In function 'calc_density': ../../../src/tools/gmx_density.c:261:9: warning: unused variable 'buf' [-Wunused-variable] char *buf; /* for tmp. keeping atomname */ ^~~ ../../../src/tools/gmx_density.c:254:9: warning: unused variable 'j' [-Wunused-variable] i,j,n, /* loop indices */ ^ ../../../src/tools/gmx_density.c:253:9: warning: unused variable 'slCount' [-Wunused-variable] **slCount, /* nr. of atoms in one slice for a group */ ^~~~~~~ In file included from ../../../src/tools/gmx_density.c:52: At top level: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_density.c:49: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_density.c:49: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/tools/gmx_density.c:48: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_current.lo ../../../src/tools/gmx_current.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_current.c -fPIC -DPIC -o .libs/gmx_current.o ../../../src/tools/gmx_current.c: In function 'calc_mjdsp': ../../../src/tools/gmx_current.c:266:7: warning: unused variable 'rfr' [-Wunused-variable] real rfr; ^~~ ../../../src/tools/gmx_current.c:265:8: warning: unused variable 'rtmp' [-Wunused-variable] real rtmp; ^~~~ ../../../src/tools/gmx_current.c: In function 'dielectric': ../../../src/tools/gmx_current.c:338:8: warning: variable 'rest' set but not used [-Wunused-but-set-variable] real rest=0.0; ^~~~ ../../../src/tools/gmx_current.c:326:8: warning: unused variable 'qtmp' [-Wunused-variable] real qtmp; ^~~~ ../../../src/tools/gmx_current.c:308:13: warning: unused variable 'dm_d' [-Wunused-variable] real dm_s,dm_d; ^~~~ ../../../src/tools/gmx_current.c:308:8: warning: unused variable 'dm_s' [-Wunused-variable] real dm_s,dm_d; ^~~~ ../../../src/tools/gmx_current.c:298:8: warning: unused variable 'rfr' [-Wunused-variable] real rfr=0.0; ^~~ ../../../src/tools/gmx_current.c:293:33: warning: variable 'itrust' set but not used [-Wunused-but-set-variable] int valloc,nalloc,nfr,nvfr,m,itrust=0; ^~~~~~ ../../../src/tools/gmx_current.c:293:31: warning: unused variable 'm' [-Wunused-variable] int valloc,nalloc,nfr,nvfr,m,itrust=0; ^ ../../../src/tools/gmx_current.c:292:17: warning: unused variable 'f' [-Wunused-variable] int i,j,k,l,f; ^ ../../../src/tools/gmx_current.c:292:15: warning: unused variable 'l' [-Wunused-variable] int i,j,k,l,f; ^ ../../../src/tools/gmx_current.c:292:13: warning: unused variable 'k' [-Wunused-variable] int i,j,k,l,f; ^ ../../../src/tools/gmx_current.c: In function 'gmx_current': ../../../src/tools/gmx_current.c:720:15: warning: unused variable 'tfile' [-Wunused-variable] FILE *tfile=NULL; ^~~~~ ../../../src/tools/gmx_current.c:719:15: warning: unused variable 'outi' [-Wunused-variable] FILE *outi=NULL; ^~~~ ../../../src/tools/gmx_current.c:716:14: warning: unused variable 'lambda' [-Wunused-variable] real lambda; ^~~~~~ ../../../src/tools/gmx_current.c:715:13: warning: unused variable 't' [-Wunused-variable] real t; ^ ../../../src/tools/gmx_current.c:714:14: warning: unused variable 'step' [-Wunused-variable] int step; ^~~~ ../../../src/tools/gmx_current.c:713:21: warning: unused variable 'l' [-Wunused-variable] int i,j,k=0,l; ^ ../../../src/tools/gmx_current.c:713:17: warning: unused variable 'k' [-Wunused-variable] int i,j,k=0,l; ^ ../../../src/tools/gmx_current.c:713:15: warning: unused variable 'j' [-Wunused-variable] int i,j,k=0,l; ^ ../../../src/tools/gmx_current.c:711:12: warning: unused variable 'natoms' [-Wunused-variable] int natoms; ^~~~~~ ../../../src/tools/gmx_current.c:707:10: warning: variable 'bNEU' set but not used [-Wunused-but-set-variable] bool bNEU; ^~~~ ../../../src/tools/gmx_current.c:706:13: warning: variable 'bTop' set but not used [-Wunused-but-set-variable] bool bTop; ^~~~ In file included from ../../../src/tools/gmx_current.c:44: At top level: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_current.c:43: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_current.c:43: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_current.c:40: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_chi.lo ../../../src/tools/gmx_chi.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_chi.c -fPIC -DPIC -o .libs/gmx_chi.o ../../../src/tools/gmx_chi.c: In function 'histogramming': ../../../src/tools/gmx_chi.c:418:23: warning: unused variable 'his_aa1' [-Wunused-variable] int ***his_aa,**his_aa1,*histmp; ^~~~~~~ ../../../src/tools/gmx_chi.c: In function 'print_transitions': ../../../src/tools/gmx_chi.c:834:8: warning: variable 'nh' set but not used [-Wunused-but-set-variable] int nh[edMax]; ^~ ../../../src/tools/gmx_chi.c: In function 'gmx_chi': ../../../src/tools/gmx_chi.c:1098:16: warning: unused variable 'j' [-Wunused-variable] int i,j,**chi_lookup,*xity; ^ In file included from ../../../src/tools/gmx_chi.c:59: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../src/tools/gmx_chi.c:49: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/tools/gmx_chi.c:47: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_chi.c:44: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_chi.c:43: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../src/tools/gmx_chi.c: In function 'histogramming.isra.1': ../../../src/tools/gmx_chi.c:657:30: warning: '.xvg' directive writing 4 bytes into a region of size between 0 and 255 [-Wformat-overflow=] sprintf(sshisfile,"%s-%s.xvg",hisfile,sss[k]); ^~~~ In file included from /usr/include/stdio.h:862, from ../../../src/tools/gmx_chi.c:39: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 6 or more bytes (assuming 261) into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_densmap.lo ../../../src/tools/gmx_densmap.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_densmap.c -fPIC -DPIC -o .libs/gmx_densmap.o In file included from ../../../src/tools/gmx_densmap.c:50: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_densmap.c:48: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_densmap.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_densmap.c:43: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_dih.lo ../../../src/tools/gmx_dih.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_dih.c -fPIC -DPIC -o .libs/gmx_dih.o ../../../src/tools/gmx_dih.c:55:13: warning: 'dump_dih' defined but not used [-Wunused-function] static void dump_dih(int nframes,char *title,real time[],real dih[]) ^~~~~~~~ In file included from ../../../src/tools/gmx_dih.c:51: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_dih.c:51: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_dih.c:46: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_dih.c:43: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ ../../../src/tools/gmx_dih.c: In function 'gmx_dih': ../../../src/tools/gmx_dih.c:265:22: warning: '%d' directive writing between 1 and 10 bytes into a region of size 6 [-Wformat-overflow=] sprintf(buf,"dih-%d",i); ^~ ../../../src/tools/gmx_dih.c:265:17: note: directive argument in the range [0, 2147483647] sprintf(buf,"dih-%d",i); ^~~~~~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../src/tools/gmx_dih.c:41: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 6 and 15 bytes into a destination of size 10 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_dielectric.lo ../../../src/tools/gmx_dielectric.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_dielectric.c -fPIC -DPIC -o .libs/gmx_dielectric.o ../../../src/tools/gmx_dielectric.c: In function 'calc_nbegin': ../../../src/tools/gmx_dielectric.c:60:11: warning: unused variable 'dtt' [-Wunused-variable] real dt,dtt; ^~~ ../../../src/tools/gmx_dielectric.c:60:8: warning: unused variable 'dt' [-Wunused-variable] real dt,dtt; ^~ In file included from ../../../src/tools/gmx_dielectric.c:53: At top level: ../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function] static t_complex csub(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function] static t_complex cadd(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function] static t_complex rcexp(real r) ^~~~~ ../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable] static t_complex cnul = { 0.0, 0.0 }; ^~~~ In file included from ../../../src/tools/gmx_dielectric.c:51: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/tools/gmx_dielectric.c:47: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_dielectric.c:44: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_spatial.lo ../../../src/tools/gmx_spatial.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_spatial.c -fPIC -DPIC -o .libs/gmx_spatial.o ../../../src/tools/gmx_spatial.c: In function 'gmx_spatial': ../../../src/tools/gmx_spatial.c:131:21: warning: unused variable 'shx' [-Wunused-variable] rvec *xtop,*shx[26]; ^~~ ../../../src/tools/gmx_spatial.c:103:15: warning: unused variable 'bSHIFT' [-Wunused-variable] static bool bSHIFT=FALSE; ^~~~~~ At top level: ../../../src/tools/gmx_spatial.c:103:15: warning: 'bSHIFT' defined but not used [-Wunused-variable] In file included from ../../../src/tools/gmx_spatial.c:44: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_spatial.c:43: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_spatial.c:43: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_spatial.c:40: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ ../../../src/tools/gmx_spatial.c:38:14: warning: 'SRCID_template_c' defined but not used [-Wunused-variable] static char *SRCID_template_c = "$Id$"; ^~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_cluster.lo ../../../src/tools/gmx_cluster.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_cluster.c -fPIC -DPIC -o .libs/gmx_cluster.o ../../../src/tools/gmx_cluster.c: In function 'mark_clusters': ../../../src/tools/gmx_cluster.c:638:11: warning: unused variable 'v' [-Wunused-variable] int i,j,v; ^ ../../../src/tools/gmx_cluster.c: In function 'gmx_cluster': ../../../src/tools/gmx_cluster.c:1341:7: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(i=0; (ipdbinfo[ii0].pdbresnr,"%d",r0+1); ^~ ../../../src/tools/gmx_sas.c:152:44: note: directive argument in the range [-2147483647, 2147483647] sprintf(atoms->pdbinfo[ii0].pdbresnr,"%d",r0+1); ^~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../src/tools/gmx_sas.c:42: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 2 and 12 bytes into a destination of size 6 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_rmsdist.lo ../../../src/tools/gmx_rmsdist.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_rmsdist.c -fPIC -DPIC -o .libs/gmx_rmsdist.o ../../../src/tools/gmx_rmsdist.c: In function 'analyze_noe_equivalent': ../../../src/tools/gmx_rmsdist.c:249:11: warning: unused variable 'fp' [-Wunused-variable] FILE *fp; ^~ ../../../src/tools/gmx_rmsdist.c: In function 'gmx_rmsdist': ../../../src/tools/gmx_rmsdist.c:534:36: warning: unused variable 'gj' [-Wunused-variable] int natom,i,j,teller,gi,gj; ^~ ../../../src/tools/gmx_rmsdist.c:534:33: warning: unused variable 'gi' [-Wunused-variable] int natom,i,j,teller,gi,gj; ^~ ../../../src/tools/gmx_rmsdist.c:534:24: warning: unused variable 'j' [-Wunused-variable] int natom,i,j,teller,gi,gj; ^ In file included from ../../../src/tools/gmx_rmsdist.c:52: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_rmsdist.c:52: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_rmsdist.c:48: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_rmsdist.c:47: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_rdf.lo ../../../src/tools/gmx_rdf.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_rdf.c -fPIC -DPIC -o .libs/gmx_rdf.o ../../../src/tools/gmx_rdf.c: In function 'do_rdf': ../../../src/tools/gmx_rdf.c:168:23: warning: unused variable 'index_cm' [-Wunused-variable] atom_id **index,*index_cm=NULL; ^~~~~~~~ ../../../src/tools/gmx_rdf.c:167:21: warning: unused variable 'isize_cm' [-Wunused-variable] int *isize,isize_cm=0,nrdf=0,max_i,isize0,isize_g; ^~~~~~~~ ../../../src/tools/gmx_rdf.c:164:40: warning: unused variable 'n' [-Wunused-variable] int g,natoms,i,j,k,nbin,j0,j1,n,nframes; ^ ../../../src/tools/gmx_rdf.c:164:37: warning: unused variable 'j1' [-Wunused-variable] int g,natoms,i,j,k,nbin,j0,j1,n,nframes; ^~ ../../../src/tools/gmx_rdf.c:164:34: warning: unused variable 'j0' [-Wunused-variable] int g,natoms,i,j,k,nbin,j0,j1,n,nframes; ^~ ../../../src/tools/gmx_rdf.c:162:28: warning: unused variable 'outf2' [-Wunused-variable] char outf1[STRLEN],outf2[STRLEN]; ^~~~~ ../../../src/tools/gmx_rdf.c:162:14: warning: unused variable 'outf1' [-Wunused-variable] char outf1[STRLEN],outf2[STRLEN]; ^~~~~ In file included from ../../../include/fftgrid.h:46, from ../../../src/tools/gmx_rdf.c:57: At top level: ../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function] static t_complex cdiv(t_complex teller,t_complex noemer) ^~~~ ../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function] static t_complex csub(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function] static t_complex cadd(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function] static t_complex rcexp(real r) ^~~~~ ../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable] static t_complex cnul = { 0.0, 0.0 }; ^~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_rdf.c:52: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_rdf.c:50: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_rdf.c:47: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_rdf.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_rms.lo ../../../src/tools/gmx_rms.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_rms.c -fPIC -DPIC -o .libs/gmx_rms.o In file included from ../../../src/tools/gmx_rms.c:49: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_rms.c:49: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_rms.c:47: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_rms.c:46: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_sgangle.lo ../../../src/tools/gmx_sgangle.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_sgangle.c -fPIC -DPIC -o .libs/gmx_sgangle.o In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_sgangle.c:52: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_sgangle.c:50: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_sgangle.c:47: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_sgangle.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_sorient.lo ../../../src/tools/gmx_sorient.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_sorient.c -fPIC -DPIC -o .libs/gmx_sorient.o ../../../src/tools/gmx_sorient.c: In function 'gmx_sorient': ../../../src/tools/gmx_sorient.c:114:72: warning: unused variable 'mtot' [-Wunused-variable] real inp,outp,two_pi,nav,normfac,rmin2,rmax2,rcut,rcut2,r2,r,mass,mtot; ^~~~ ../../../src/tools/gmx_sorient.c:114:67: warning: unused variable 'mass' [-Wunused-variable] real inp,outp,two_pi,nav,normfac,rmin2,rmax2,rcut,rcut2,r2,r,mass,mtot; ^~~~ ../../../src/tools/gmx_sorient.c:114:20: warning: variable 'two_pi' set but not used [-Wunused-but-set-variable] real inp,outp,two_pi,nav,normfac,rmin2,rmax2,rcut,rcut2,r2,r,mass,mtot; ^~~~~~ ../../../src/tools/gmx_sorient.c:108:13: warning: unused variable 'j' [-Wunused-variable] int i,j,p,sa0,sa1,sa2,n,ntot,nf,m,*hist1,*hist2,*histn,nbin1,nbin2,nrbin; ^ In file included from ../../../src/tools/gmx_sorient.c:45: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_sorient.c:45: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/tools/gmx_sorient.c:43: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_sorient.c:41: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_sdf.lo ../../../src/tools/gmx_sdf.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_sdf.c -fPIC -DPIC -o .libs/gmx_sdf.o ../../../src/tools/gmx_sdf.c: In function 'do_sdf': ../../../src/tools/gmx_sdf.c:101:25: warning: unused variable 'bRefDone' [-Wunused-variable] bool bTop=FALSE,bRefDone=FALSE,bInGroup=FALSE; ^~~~~~~~ ../../../src/tools/gmx_sdf.c:97:17: warning: unused variable 'jx' [-Wunused-variable] atom_id ix,jx; ^~ ../../../src/tools/gmx_sdf.c:97:14: warning: unused variable 'ix' [-Wunused-variable] atom_id ix,jx; ^~ ../../../src/tools/gmx_sdf.c:92:17: warning: unused variable 'xcog' [-Wunused-variable] rvec *x,xcog,dx,*x_i1,xi,*x_refmol; ^~~~ ../../../src/tools/gmx_sdf.c:89:23: warning: variable 'hbox' set but not used [-Wunused-but-set-variable] real t,boxmin,hbox,normfac; ^~~~ ../../../src/tools/gmx_sdf.c:88:15: warning: unused variable 'index_ref' [-Wunused-variable] atom_id *index_ref=NULL; ^~~~~~~~~ ../../../src/tools/gmx_sdf.c:87:15: warning: unused variable 'index_cg' [-Wunused-variable] atom_id *index_cg=NULL; ^~~~~~~~ ../../../src/tools/gmx_sdf.c:85:24: warning: unused variable 'refc' [-Wunused-variable] int nrefmol=0,refc=0; ^~~~ ../../../src/tools/gmx_sdf.c:83:14: warning: unused variable 'isize_ref' [-Wunused-variable] int isize_ref=3; ^~~~~~~~~ ../../../src/tools/gmx_sdf.c:82:14: warning: unused variable 'isize_cg' [-Wunused-variable] int isize_cg=0; ^~~~~~~~ ../../../src/tools/gmx_sdf.c:75:41: warning: unused variable 'dest' [-Wunused-variable] int ng,natoms,i,j,k,l,X,Y,Z,lc,dest; ^~~~ ../../../src/tools/gmx_sdf.c:75:38: warning: unused variable 'lc' [-Wunused-variable] int ng,natoms,i,j,k,l,X,Y,Z,lc,dest; ^~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_sdf.c:33: At top level: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_sdf.c:31: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_sdf.c:28: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_sdf.c:28: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ ../../../src/tools/gmx_sdf.c:20:14: warning: 'SRCID_template_c' defined but not used [-Wunused-variable] static char *SRCID_template_c = "$Id$"; ^~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_spol.lo ../../../src/tools/gmx_spol.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_spol.c -fPIC -DPIC -o .libs/gmx_spol.o ../../../src/tools/gmx_spol.c: In function 'gmx_spol': ../../../src/tools/gmx_spol.c:165:28: warning: unused variable 'bPBC' [-Wunused-variable] static bool bCom = FALSE,bPBC = FALSE; ^~~~ ../../../src/tools/gmx_spol.c:131:13: warning: unused variable 'xtop' [-Wunused-variable] rvec *xtop,*x,xref,try,dx,dip,dir; ^~~~ ../../../src/tools/gmx_spol.c:127:12: warning: unused variable 'title' [-Wunused-variable] char title[STRLEN]; ^~~~~ At top level: ../../../src/tools/gmx_spol.c:165:28: warning: 'bPBC' defined but not used [-Wunused-variable] static bool bCom = FALSE,bPBC = FALSE; ^~~~ In file included from ../../../src/tools/gmx_spol.c:45: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_spol.c:45: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/tools/gmx_spol.c:43: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_spol.c:41: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_hbond.lo ../../../src/tools/gmx_hbond.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_hbond.c -fPIC -DPIC -o .libs/gmx_hbond.o ../../../src/tools/gmx_hbond.c: In function 'mk_hbmap': ../../../src/tools/gmx_hbond.c:182:10: warning: unused variable 'j' [-Wunused-variable] int i,j; ^ ../../../src/tools/gmx_hbond.c: In function 'add_frames': ../../../src/tools/gmx_hbond.c:194:14: warning: unused variable 'l' [-Wunused-variable] int i,j,k,l; ^ ../../../src/tools/gmx_hbond.c:194:12: warning: unused variable 'k' [-Wunused-variable] int i,j,k,l; ^ ../../../src/tools/gmx_hbond.c:194:10: warning: unused variable 'j' [-Wunused-variable] int i,j,k,l; ^ ../../../src/tools/gmx_hbond.c:194:8: warning: unused variable 'i' [-Wunused-variable] int i,j,k,l; ^ ../../../src/tools/gmx_hbond.c: In function 'search_donors': ../../../src/tools/gmx_hbond.c:543:14: warning: unused variable 'stop' [-Wunused-variable] bool stop; ^~~~ ../../../src/tools/gmx_hbond.c:539:22: warning: unused variable 'n' [-Wunused-variable] int i,j,nra,n; ^ ../../../src/tools/gmx_hbond.c:539:18: warning: unused variable 'nra' [-Wunused-variable] int i,j,nra,n; ^~~ ../../../src/tools/gmx_hbond.c: In function 'is_hbond': ../../../src/tools/gmx_hbond.c:900:19: warning: unused variable 'ihb' [-Wunused-variable] int h,hh,id,ja,ihb; ^~~ ../../../src/tools/gmx_hbond.c: In function 'merge_hb': ../../../src/tools/gmx_hbond.c:1021:44: warning: unused variable 'ogrp' [-Wunused-variable] int i,inrnew,indnew,j,ii,jj,m,id,ia,grp,ogrp,ntmp; ^~~~ ../../../src/tools/gmx_hbond.c:1021:40: warning: unused variable 'grp' [-Wunused-variable] int i,inrnew,indnew,j,ii,jj,m,id,ia,grp,ogrp,ntmp; ^~~ ../../../src/tools/gmx_hbond.c:1021:32: warning: unused variable 'm' [-Wunused-variable] int i,inrnew,indnew,j,ii,jj,m,id,ia,grp,ogrp,ntmp; ^ ../../../src/tools/gmx_hbond.c: In function 'do_nhb_dist': ../../../src/tools/gmx_hbond.c:1077:8: warning: unused variable 'nhb' [-Wunused-variable] h_id nhb; ^~~ ../../../src/tools/gmx_hbond.c: In function 'smooth_tail': ../../../src/tools/gmx_hbond.c:1439:9: warning: unused variable 'fp' [-Wunused-variable] FILE *fp; ^~ ../../../src/tools/gmx_hbond.c: In function 'analyse_corr': ../../../src/tools/gmx_hbond.c:1461:56: warning: unused variable 'dt' [-Wunused-variable] real Q=0,chi22,chi2,dg,dgp,tau_hb,dtau,tau_rlx,e_1,dt,sigma_k,sigma_kp,ddg; ^~ ../../../src/tools/gmx_hbond.c:1461:28: warning: unused variable 'dgp' [-Wunused-variable] real Q=0,chi22,chi2,dg,dgp,tau_hb,dtau,tau_rlx,e_1,dt,sigma_k,sigma_kp,ddg; ^~~ ../../../src/tools/gmx_hbond.c:1461:25: warning: unused variable 'dg' [-Wunused-variable] real Q=0,chi22,chi2,dg,dgp,tau_hb,dtau,tau_rlx,e_1,dt,sigma_k,sigma_kp,ddg; ^~ ../../../src/tools/gmx_hbond.c:1461:14: warning: variable 'chi22' set but not used [-Wunused-but-set-variable] real Q=0,chi22,chi2,dg,dgp,tau_hb,dtau,tau_rlx,e_1,dt,sigma_k,sigma_kp,ddg; ^~~~~ ../../../src/tools/gmx_hbond.c: In function 'do_hbac': ../../../src/tools/gmx_hbond.c:1585:27: warning: variable 'ngh' set but not used [-Wunused-but-set-variable] int nh,nhbonds,nhydro,ngh; ^~~ ../../../src/tools/gmx_hbond.c:1577:18: warning: unused variable 'nd' [-Wunused-variable] int i,j,k,m,n,nd,ihb,idist,n2,nn; ^~ ../../../src/tools/gmx_hbond.c:1577:16: warning: unused variable 'n' [-Wunused-variable] int i,j,k,m,n,nd,ihb,idist,n2,nn; ^ ../../../src/tools/gmx_hbond.c: In function 'gmx_hbond': ../../../src/tools/gmx_hbond.c:2051:30: warning: unused variable 'bin' [-Wunused-variable] int grp,nabin,nrbin,bin,resdist,ihb; ^~~ ../../../src/tools/gmx_hbond.c:2049:43: warning: unused variable 'was' [-Wunused-variable] bool bSelected,bHBmap,bStop,bTwo,new,was,bBox,bTric; ^~~ ../../../src/tools/gmx_hbond.c:2049:39: warning: unused variable 'new' [-Wunused-variable] bool bSelected,bHBmap,bStop,bTwo,new,was,bBox,bTric; ^~~ ../../../src/tools/gmx_hbond.c:2045:34: warning: unused variable 'ja' [-Wunused-variable] int h,i,j,k,l,start,end,id,ja,ogrp,nsel; ^~ ../../../src/tools/gmx_hbond.c:2045:31: warning: unused variable 'id' [-Wunused-variable] int h,i,j,k,l,start,end,id,ja,ogrp,nsel; ^~ ../../../src/tools/gmx_hbond.c:2045:27: warning: unused variable 'end' [-Wunused-variable] int h,i,j,k,l,start,end,id,ja,ogrp,nsel; ^~~ ../../../src/tools/gmx_hbond.c:2045:21: warning: unused variable 'start' [-Wunused-variable] int h,i,j,k,l,start,end,id,ja,ogrp,nsel; ^~~~~ ../../../src/tools/gmx_hbond.c:2045:19: warning: unused variable 'l' [-Wunused-variable] int h,i,j,k,l,start,end,id,ja,ogrp,nsel; ^ At top level: ../../../src/tools/gmx_hbond.c:372:13: warning: 'in_list' defined but not used [-Wunused-function] static bool in_list(atom_id selection,int isize,atom_id *index) ^~~~~~~ In file included from ../../../include/gmx_fft.h:41, from ../../../src/tools/correl.h:40, from ../../../src/tools/gmx_hbond.c:59: ../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function] static t_complex cdiv(t_complex teller,t_complex noemer) ^~~~ ../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function] static t_complex csub(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function] static t_complex cadd(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function] static t_complex rcexp(real r) ^~~~~ ../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable] static t_complex cnul = { 0.0, 0.0 }; ^~~~ In file included from ../../../src/tools/gmx_hbond.c:53: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_hbond.c:53: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/tools/gmx_hbond.c:43: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_hbond.c:42: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_tcaf.lo ../../../src/tools/gmx_tcaf.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_tcaf.c -fPIC -DPIC -o .libs/gmx_tcaf.o ../../../src/tools/gmx_tcaf.c: In function 'gmx_tcaf': ../../../src/tools/gmx_tcaf.c:274:16: warning: unused variable 'c1' [-Wunused-variable] real **c1,**tc; ^~ ../../../src/tools/gmx_tcaf.c:265:14: warning: unused variable 'bTPS' [-Wunused-variable] bool bTPS,bTop; /* ,bCubic; */ ^~~~ In file included from ../../../src/tools/gmx_tcaf.c:57: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../src/tools/gmx_tcaf.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/tools/gmx_tcaf.c:46: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_tcaf.c:43: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_velacc.lo ../../../src/tools/gmx_velacc.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_velacc.c -fPIC -DPIC -o .libs/gmx_velacc.o In file included from ../../../src/tools/gmx_velacc.c:57: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../src/tools/gmx_velacc.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/tools/gmx_velacc.c:46: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_velacc.c:43: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o correl.lo ../../../src/tools/correl.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/correl.c -fPIC -DPIC -o .libs/correl.o ../../../src/tools/correl.c: In function 'complex_mult': ../../../src/tools/correl.c:189:10: warning: unused variable 'no2' [-Wunused-variable] int i,no2,n_2,k; ^~~ In file included from ../../../include/gmx_fft.h:41, from ../../../src/tools/correl.c:43: At top level: ../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function] static t_complex cdiv(t_complex teller,t_complex noemer) ^~~~ ../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function] static t_complex csub(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function] static t_complex cadd(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function] static t_complex rcexp(real r) ^~~~~ ../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable] static t_complex cnul = { 0.0, 0.0 }; ^~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_mdmat.lo ../../../src/tools/gmx_mdmat.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_mdmat.c -fPIC -DPIC -o .libs/gmx_mdmat.o ../../../src/tools/gmx_mdmat.c: In function 'gmx_mdmat': ../../../src/tools/gmx_mdmat.c:193:14: warning: unused variable 'nr0' [-Wunused-variable] int nr0; ^~~ ../../../src/tools/gmx_mdmat.c:192:45: warning: unused variable 'it' [-Wunused-variable] int i,j,status,nres,natoms,nframes,it,trxnat; ^~ ../../../src/tools/gmx_mdmat.c:165:15: warning: unused variable 'bAtom' [-Wunused-variable] static bool bAtom=FALSE; ^~~~~ At top level: ../../../src/tools/gmx_mdmat.c:165:15: warning: 'bAtom' defined but not used [-Wunused-variable] In file included from ../../../src/tools/gmx_mdmat.c:49: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_mdmat.c:48: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_mdmat.c:44: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_mdmat.c:44: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_helixorient.lo ../../../src/tools/gmx_helixorient.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_helixorient.c -fPIC -DPIC -o .libs/gmx_helixorient.o ../../../src/tools/gmx_helixorient.c: In function 'gmx_helixorient': ../../../src/tools/gmx_helixorient.c:125:14: warning: unused variable 'rotangle' [-Wunused-variable] real tmp,rotangle; ^~~~~~~~ ../../../src/tools/gmx_helixorient.c:107:10: warning: unused variable 'axes' [-Wunused-variable] rvec axes[3]; ^~~~ ../../../src/tools/gmx_helixorient.c:106:10: warning: unused variable 'axes_t0' [-Wunused-variable] rvec axes_t0[3]; ^~~~~~~ ../../../src/tools/gmx_helixorient.c:93:27: warning: unused variable 'vproj' [-Wunused-variable] rvec v1,v2,p1,p2,vtmp,vproj; ^~~~~ ../../../src/tools/gmx_helixorient.c:93:22: warning: unused variable 'vtmp' [-Wunused-variable] rvec v1,v2,p1,p2,vtmp,vproj; ^~~~ ../../../src/tools/gmx_helixorient.c:93:19: warning: unused variable 'p2' [-Wunused-variable] rvec v1,v2,p1,p2,vtmp,vproj; ^~ ../../../src/tools/gmx_helixorient.c:93:16: warning: unused variable 'p1' [-Wunused-variable] rvec v1,v2,p1,p2,vtmp,vproj; ^~ ../../../src/tools/gmx_helixorient.c:92:10: warning: unused variable 'averageaxis' [-Wunused-variable] rvec averageaxis; ^~~~~~~~~~~ ../../../src/tools/gmx_helixorient.c:86:9: warning: unused variable 'd' [-Wunused-variable] int d,i,j,teller=0; ^ ../../../src/tools/gmx_helixorient.c:80:18: warning: unused variable 'dx' [-Wunused-variable] rvec *x=NULL,dx; ^~ In file included from ../../../src/tools/gmx_helixorient.c:48: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_helixorient.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_helixorient.c:46: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_helixorient.c:45: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_clustsize.lo ../../../src/tools/gmx_clustsize.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_clustsize.c -fPIC -DPIC -o .libs/gmx_clustsize.o ../../../src/tools/gmx_clustsize.c: In function 'clust_size': ../../../src/tools/gmx_clustsize.c:94:50: warning: unused variable 'n_y' [-Wunused-variable] int i,j,k,ai,aj,ak,ci,cj,nframe,nclust,n_x,n_y,max_size=0; ^~~ ../../../src/tools/gmx_clustsize.c:94:23: warning: unused variable 'ak' [-Wunused-variable] int i,j,k,ai,aj,ak,ci,cj,nframe,nclust,n_x,n_y,max_size=0; ^~ ../../../src/tools/gmx_clustsize.c:89:40: warning: unused variable 'nsame' [-Wunused-variable] int version,generation,sss,ii,jj,nsame; ^~~~~ ../../../src/tools/gmx_clustsize.c: In function 'gmx_clustsize': ../../../src/tools/gmx_clustsize.c:396:18: warning: unused variable 'bRDF' [-Wunused-variable] bool bSQ,bRDF; ^~~~ ../../../src/tools/gmx_clustsize.c:396:14: warning: unused variable 'bSQ' [-Wunused-variable] bool bSQ,bRDF; ^~~ In file included from ../../../include/pme.h:46, from ../../../src/tools/gmx_clustsize.c:62: At top level: ../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function] static t_complex cdiv(t_complex teller,t_complex noemer) ^~~~ ../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function] static t_complex csub(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function] static t_complex cadd(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function] static t_complex rcexp(real r) ^~~~~ ../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable] static t_complex cnul = { 0.0, 0.0 }; ^~~~ In file included from ../../../src/tools/gmx_clustsize.c:52: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_clustsize.c:50: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_clustsize.c:47: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_clustsize.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_nmtraj.lo ../../../src/tools/gmx_nmtraj.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_nmtraj.c -fPIC -DPIC -o .libs/gmx_nmtraj.o ../../../src/tools/gmx_nmtraj.c: In function 'gmx_nmtraj': ../../../src/tools/gmx_nmtraj.c:129:14: warning: variable 'dum' set but not used [-Wunused-but-set-variable] real dum; ^~~ ../../../src/tools/gmx_nmtraj.c:124:14: warning: unused variable 'found' [-Wunused-variable] bool found; ^~~~~ ../../../src/tools/gmx_nmtraj.c:123:25: warning: unused variable 'sum' [-Wunused-variable] real omega,Ekin,sum,m,vel; ^~~ ../../../src/tools/gmx_nmtraj.c:121:15: warning: unused variable 'out_eigval' [-Wunused-variable] real *out_eigval; ^~~~~~~~~~ ../../../src/tools/gmx_nmtraj.c:115:14: warning: unused variable 'neigval' [-Wunused-variable] int neigval; ^~~~~~~ ../../../src/tools/gmx_nmtraj.c:113:14: warning: unused variable 'grpname' [-Wunused-variable] char * grpname; ^~~~~~~ ../../../src/tools/gmx_nmtraj.c:111:14: warning: unused variable 'indexfile' [-Wunused-variable] char * indexfile; ^~~~~~~~~ ../../../src/tools/gmx_nmtraj.c:109:30: warning: unused variable 'v' [-Wunused-variable] int i,j,k,kmode,d,s,v; ^ ../../../src/tools/gmx_nmtraj.c:109:28: warning: unused variable 's' [-Wunused-variable] int i,j,k,kmode,d,s,v; ^ ../../../src/tools/gmx_nmtraj.c:105:15: warning: unused variable 'eigvalnr' [-Wunused-variable] int *eigvalnr; ^~~~~~~~ In file included from ../../../src/tools/gmx_nmtraj.c:54: At top level: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/tools/gmx_nmtraj.c:50: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_nmtraj.c:49: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_nmtraj.c:49: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_nmtraj.c:43: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_traj.lo ../../../src/tools/gmx_traj.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_traj.c -fPIC -DPIC -o .libs/gmx_traj.o ../../../src/tools/gmx_traj.c: In function 'write_pdb_bfac': ../../../src/tools/gmx_traj.c:337:11: warning: unused variable 'bOne' [-Wunused-variable] bool bOne; ^~~~ ../../../src/tools/gmx_traj.c: In function 'gmx_traj': ../../../src/tools/gmx_traj.c:525:18: warning: unused variable 'n' [-Wunused-variable] int i,j,n; ^ In file included from ../../../src/tools/gmx_traj.c:49: At top level: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_traj.c:47: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_traj.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_traj.c:42: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_trjorder.lo ../../../src/tools/gmx_trjorder.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_trjorder.c -fPIC -DPIC -o .libs/gmx_trjorder.o In file included from ../../../src/tools/gmx_trjorder.c:49: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_trjorder.c:47: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_trjorder.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_trjorder.c:42: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_trjcat.lo ../../../src/tools/gmx_trjcat.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_trjcat.c -fPIC -DPIC -o .libs/gmx_trjcat.o ../../../src/tools/gmx_trjcat.c: In function 'scan_trj_files': ../../../src/tools/gmx_trjcat.c:78:8: warning: unused variable 't' [-Wunused-variable] real t; ^ ../../../src/tools/gmx_trjcat.c: In function 'gmx_trjcat': ../../../src/tools/gmx_trjcat.c:392:58: warning: unused variable 'last_ok_step' [-Wunused-variable] int earliersteps,nfile_in,nfile_out,*cont_type,last_ok_step; ^~~~~~~~~~~~ ../../../src/tools/gmx_trjcat.c:388:34: warning: unused variable 'in_file' [-Wunused-variable] char **fnms,**fnms_out,*in_file,*out_file; ^~~~~~~ ../../../src/tools/gmx_trjcat.c:385:19: warning: unused variable 'v' [-Wunused-variable] rvec *x,*v; ^ ../../../src/tools/gmx_trjcat.c:385:16: warning: unused variable 'x' [-Wunused-variable] rvec *x,*v; ^ ../../../src/tools/gmx_trjcat.c:384:53: warning: unused variable 'trjout' [-Wunused-variable] int status,ftpin,i,frame,frame_out,step=0,trjout=0; ^~~~~~ ../../../src/tools/gmx_trjcat.c:384:22: warning: unused variable 'ftpin' [-Wunused-variable] int status,ftpin,i,frame,frame_out,step=0,trjout=0; ^~~~~ In file included from ../../../src/tools/gmx_trjcat.c:56: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_trjcat.c:56: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/tools/gmx_trjcat.c:52: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_trjcat.c:50: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_trjcat.c:46: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_sham.lo ../../../src/tools/gmx_sham.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_sham.c -fPIC -DPIC -o .libs/gmx_sham.o ../../../src/tools/gmx_sham.c: In function 'do_sham': ../../../src/tools/gmx_sham.c:286:32: warning: unused variable 'd' [-Wunused-variable] int i,j,k,imin,len,index,d,*nbin,*bindex,bi; ^ ../../../src/tools/gmx_sham.c: In function 'gmx_sham': ../../../src/tools/gmx_sham.c:778:41: warning: unused variable 'db' [-Wunused-variable] double *av,*sig,cum1,cum2,cum3,cum4,db; ^~ ../../../src/tools/gmx_sham.c:778:36: warning: unused variable 'cum4' [-Wunused-variable] double *av,*sig,cum1,cum2,cum3,cum4,db; ^~~~ ../../../src/tools/gmx_sham.c:778:31: warning: unused variable 'cum3' [-Wunused-variable] double *av,*sig,cum1,cum2,cum3,cum4,db; ^~~~ ../../../src/tools/gmx_sham.c:778:26: warning: unused variable 'cum2' [-Wunused-variable] double *av,*sig,cum1,cum2,cum3,cum4,db; ^~~~ ../../../src/tools/gmx_sham.c:778:21: warning: unused variable 'cum1' [-Wunused-variable] double *av,*sig,cum1,cum2,cum3,cum4,db; ^~~~ ../../../src/tools/gmx_sham.c:778:17: warning: unused variable 'sig' [-Wunused-variable] double *av,*sig,cum1,cum2,cum3,cum4,db; ^~~ ../../../src/tools/gmx_sham.c:778:13: warning: unused variable 'av' [-Wunused-variable] double *av,*sig,cum1,cum2,cum3,cum4,db; ^~ ../../../src/tools/gmx_sham.c:776:66: warning: unused variable 'error' [-Wunused-variable] real **val,**et_val,**dt_val,*t,*e_t,e_dt,d_dt,*d_t,dt,tot,error; ^~~~~ ../../../src/tools/gmx_sham.c:776:62: warning: unused variable 'tot' [-Wunused-variable] real **val,**et_val,**dt_val,*t,*e_t,e_dt,d_dt,*d_t,dt,tot,error; ^~~ ../../../src/tools/gmx_sham.c:775:51: warning: unused variable 'j' [-Wunused-variable] int n,e_n,d_n,nlast,s,nset,e_nset,d_nset,i,j=0,*idim,*ibox; ^ ../../../src/tools/gmx_sham.c:775:28: warning: unused variable 's' [-Wunused-variable] int n,e_n,d_n,nlast,s,nset,e_nset,d_nset,i,j=0,*idim,*ibox; ^ ../../../src/tools/gmx_sham.c:775:22: warning: unused variable 'nlast' [-Wunused-variable] int n,e_n,d_n,nlast,s,nset,e_nset,d_nset,i,j=0,*idim,*ibox; ^~~~~ ../../../src/tools/gmx_sham.c:774:13: warning: unused variable 'out' [-Wunused-variable] FILE *out; ^~~ ../../../src/tools/gmx_sham.c:728:35: warning: unused variable 'resol' [-Wunused-variable] static int nsets_in=1,nb_min=4,resol=10,nlevels=25; ^~~~~ ../../../src/tools/gmx_sham.c:728:26: warning: unused variable 'nb_min' [-Wunused-variable] static int nsets_in=1,nb_min=4,resol=10,nlevels=25; ^~~~~~ ../../../src/tools/gmx_sham.c:723:15: warning: unused variable 'bShamEner' [-Wunused-variable] static bool bShamEner=TRUE,bSham=TRUE; ^~~~~~~~~ ../../../src/tools/gmx_sham.c:722:56: warning: unused variable 'bPower' [-Wunused-variable] static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE; ^~~~~~ ../../../src/tools/gmx_sham.c:722:41: warning: unused variable 'bEeFitAc' [-Wunused-variable] static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE; ^~~~~~~~ ../../../src/tools/gmx_sham.c:722:28: warning: unused variable 'bEENLC' [-Wunused-variable] static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE; ^~~~~~ ../../../src/tools/gmx_sham.c:722:15: warning: unused variable 'bEESEF' [-Wunused-variable] static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE; ^~~~~~ ../../../src/tools/gmx_sham.c:721:66: warning: unused variable 'bXYdy' [-Wunused-variable] static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE; ^~~~~ ../../../src/tools/gmx_sham.c:721:50: warning: unused variable 'bAverCorr' [-Wunused-variable] static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE; ^~~~~~~~~ ../../../src/tools/gmx_sham.c:721:38: warning: unused variable 'bSubAv' [-Wunused-variable] static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE; ^~~~~~ ../../../src/tools/gmx_sham.c:720:36: warning: unused variable 'filtlen' [-Wunused-variable] static real tb=-1,te=-1,frac=0.5,filtlen=0,binwidth=0.1; ^~~~~~~ ../../../src/tools/gmx_sham.c:720:27: warning: unused variable 'frac' [-Wunused-variable] static real tb=-1,te=-1,frac=0.5,filtlen=0,binwidth=0.1; ^~~~ At top level: ../../../src/tools/gmx_sham.c:720:27: warning: 'frac' defined but not used [-Wunused-variable] ../../../src/tools/gmx_sham.c:720:36: warning: 'filtlen' defined but not used [-Wunused-variable] static real tb=-1,te=-1,frac=0.5,filtlen=0,binwidth=0.1; ^~~~~~~ ../../../src/tools/gmx_sham.c:721:38: warning: 'bSubAv' defined but not used [-Wunused-variable] static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE; ^~~~~~ ../../../src/tools/gmx_sham.c:721:50: warning: 'bAverCorr' defined but not used [-Wunused-variable] static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE; ^~~~~~~~~ ../../../src/tools/gmx_sham.c:721:66: warning: 'bXYdy' defined but not used [-Wunused-variable] static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE; ^~~~~ ../../../src/tools/gmx_sham.c:722:15: warning: 'bEESEF' defined but not used [-Wunused-variable] static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE; ^~~~~~ ../../../src/tools/gmx_sham.c:722:28: warning: 'bEENLC' defined but not used [-Wunused-variable] static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE; ^~~~~~ ../../../src/tools/gmx_sham.c:722:41: warning: 'bEeFitAc' defined but not used [-Wunused-variable] static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE; ^~~~~~~~ ../../../src/tools/gmx_sham.c:722:56: warning: 'bPower' defined but not used [-Wunused-variable] static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE; ^~~~~~ ../../../src/tools/gmx_sham.c:723:15: warning: 'bShamEner' defined but not used [-Wunused-variable] static bool bShamEner=TRUE,bSham=TRUE; ^~~~~~~~~ ../../../src/tools/gmx_sham.c:728:26: warning: 'nb_min' defined but not used [-Wunused-variable] static int nsets_in=1,nb_min=4,resol=10,nlevels=25; ^~~~~~ ../../../src/tools/gmx_sham.c:728:35: warning: 'resol' defined but not used [-Wunused-variable] static int nsets_in=1,nb_min=4,resol=10,nlevels=25; ^~~~~ In file included from ../../../src/tools/gmx_sham.c:56: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/tools/gmx_sham.c:48: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_sham.c:47: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_sham.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_sham.c:41: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_genbox.lo ../../../src/tools/gmx_genbox.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_genbox.c -fPIC -DPIC -o .libs/gmx_genbox.o ../../../src/tools/gmx_genbox.c: In function 'gmx_genbox': ../../../src/tools/gmx_genbox.c:665:11: warning: unused variable 'pbc' [-Wunused-variable] t_pbc pbc; ^~~ In file included from ../../../src/tools/gmx_genbox.c:61: At top level: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_genbox.c:57: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_genbox.c:55: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_genbox.c:55: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/tools/gmx_genbox.c:47: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ ../../../src/tools/gmx_genbox.c: In function 'update_top.constprop': ../../../src/tools/gmx_genbox.c:538:19: warning: ' in water ' directive writing 10 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(buf,"%s in water\n",buf2); ^~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../src/tools/gmx_genbox.c:41: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 11 and 4106 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_wham.lo ../../../src/tools/gmx_wham.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_wham.c -fPIC -DPIC -o .libs/gmx_wham.o In file included from ../../../src/tools/gmx_wham.c:48: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_wham.c:47: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_wham.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_wham.c:44: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ ../../../src/tools/gmx_wham.c: In function 'open_pdo_pipe': ../../../src/tools/gmx_wham.c:1201:27: warning: ' -c < ' directive writing 6 bytes into a region of size between 1 and 1024 [-Wformat-overflow=] sprintf(Buffer,"%s -c < %s",gunzip,fn); ^~~~~~ In file included from /usr/include/stdio.h:862, from ../../../src/tools/gmx_wham.c:37: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 7 or more bytes (assuming 1030) into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_genion.lo ../../../src/tools/gmx_genion.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_genion.c -fPIC -DPIC -o .libs/gmx_genion.o ../../../src/tools/gmx_genion.c: In function 'insert_ion': ../../../src/tools/gmx_genion.c:72:8: warning: unused variable 'xei' [-Wunused-variable] rvec xei,dx; ^~~ ../../../src/tools/gmx_genion.c:70:29: warning: unused variable 'm' [-Wunused-variable] int i,ii,ei,owater,wlast,m,nw; ^ ../../../src/tools/gmx_genion.c:70:23: warning: unused variable 'wlast' [-Wunused-variable] int i,ii,ei,owater,wlast,m,nw; ^~~~~ ../../../src/tools/gmx_genion.c:70:16: warning: unused variable 'owater' [-Wunused-variable] int i,ii,ei,owater,wlast,m,nw; ^~~~~~ In file included from ../../../src/tools/gmx_genion.c:54: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../src/tools/gmx_genion.c:51: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/tools/gmx_genion.c:48: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_genion.c:46: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_genion.c:41: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_genconf.lo ../../../src/tools/gmx_genconf.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_genconf.c -fPIC -DPIC -o .libs/gmx_genconf.o ../../../src/tools/gmx_genconf.c:93:13: warning: 'move_x' defined but not used [-Wunused-function] static void move_x(int natoms,rvec x[],matrix box) ^~~~~~ In file included from ../../../src/tools/gmx_genconf.c:48: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_genconf.c:47: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_genconf.c:42: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_genconf.c:40: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_genpr.lo ../../../src/tools/gmx_genpr.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_genpr.c -fPIC -DPIC -o .libs/gmx_genpr.o In file included from ../../../src/tools/gmx_genpr.c:50: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_genpr.c:50: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/tools/gmx_genpr.c:44: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_genpr.c:42: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_editconf.lo ../../../src/tools/gmx_editconf.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_editconf.c -fPIC -DPIC -o .libs/gmx_editconf.o ../../../src/tools/gmx_editconf.c: In function 'calc_geom': ../../../src/tools/gmx_editconf.c:103:12: warning: unused variable 'grpnames' [-Wunused-variable] char *grpnames; ^~~~~~~~ ../../../src/tools/gmx_editconf.c: In function 'set_pdb_conf_bfac': ../../../src/tools/gmx_editconf.c:195:9: warning: unused variable 'out' [-Wunused-variable] FILE *out; ^~~ ../../../src/tools/gmx_editconf.c: In function 'gmx_editconf': ../../../src/tools/gmx_editconf.c:518:35: warning: unused variable 'zcent' [-Wunused-variable] real xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw; ^~~~~ ../../../src/tools/gmx_editconf.c:518:29: warning: unused variable 'ycent' [-Wunused-variable] real xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw; ^~~~~ ../../../src/tools/gmx_editconf.c:518:23: warning: unused variable 'xcent' [-Wunused-variable] real xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw; ^~~~~ ../../../src/tools/gmx_editconf.c:518:20: warning: unused variable 'zs' [-Wunused-variable] real xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw; ^~ ../../../src/tools/gmx_editconf.c:518:17: warning: unused variable 'ys' [-Wunused-variable] real xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw; ^~ ../../../src/tools/gmx_editconf.c:518:14: warning: unused variable 'xs' [-Wunused-variable] real xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw; ^~ ../../../src/tools/gmx_editconf.c:516:38: warning: unused variable 'bCubic' [-Wunused-variable] bool bIndex,bSetSize,bSetAng,bCubic,bDist,bSetCenter; ^~~~~~ ../../../src/tools/gmx_editconf.c:512:30: warning: unused variable 'tindex' [-Wunused-variable] atom_id *index,*sindex,*tindex; ^~~~~~ ../../../src/tools/gmx_editconf.c:511:26: warning: unused variable 'tsize' [-Wunused-variable] int isize,ssize,tsize; ^~~~~ ../../../src/tools/gmx_editconf.c:456:33: warning: unused variable 'to_diam' [-Wunused-variable] static real dist=0.0,rbox=0.0,to_diam=0.0; ^~~~~~~ ../../../src/tools/gmx_editconf.c:456:24: warning: unused variable 'rbox' [-Wunused-variable] static real dist=0.0,rbox=0.0,to_diam=0.0; ^~~~ At top level: ../../../src/tools/gmx_editconf.c:456:24: warning: 'rbox' defined but not used [-Wunused-variable] ../../../src/tools/gmx_editconf.c:456:33: warning: 'to_diam' defined but not used [-Wunused-variable] static real dist=0.0,rbox=0.0,to_diam=0.0; ^~~~~~~ ../../../src/tools/gmx_editconf.c:79:14: warning: 'pdbtp' defined but not used [-Wunused-variable] static char *pdbtp[epdbNR]={"ATOM ","HETATM"}; ^~~~~ In file included from ../../../src/tools/gmx_editconf.c:53: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_editconf.c:53: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_editconf.c:49: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_editconf.c:48: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_editconf.c:43: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_xpm2ps.lo ../../../src/tools/gmx_xpm2ps.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_xpm2ps.c -fPIC -DPIC -o .libs/gmx_xpm2ps.o ../../../src/tools/gmx_xpm2ps.c: In function 'xpm_mat': ../../../src/tools/gmx_xpm2ps.c:559:14: warning: unused variable 'k' [-Wunused-variable] int i,j,k,x,y,col; ^ ../../../src/tools/gmx_xpm2ps.c:559:12: warning: unused variable 'j' [-Wunused-variable] int i,j,k,x,y,col; ^ ../../../src/tools/gmx_xpm2ps.c:558:10: warning: unused variable 'buf' [-Wunused-variable] char buf[100]; ^~~ ../../../src/tools/gmx_xpm2ps.c: In function 'tick_spacing': ../../../src/tools/gmx_xpm2ps.c:599:18: warning: unused variable 'bFive' [-Wunused-variable] bool bTryAgain,bFive; ^~~~~ ../../../src/tools/gmx_xpm2ps.c: In function 'ps_mat': ../../../src/tools/gmx_xpm2ps.c:644:12: warning: unused variable 'j' [-Wunused-variable] int i,j,x,y,col,leg=0; ^ ../../../src/tools/gmx_xpm2ps.c: In function 'write_combined_matrix': ../../../src/tools/gmx_xpm2ps.c:919:14: warning: unused variable 'map' [-Wunused-variable] t_mapping *map=NULL; ^~~ ../../../src/tools/gmx_xpm2ps.c: In function 'gmx_xpm2ps': ../../../src/tools/gmx_xpm2ps.c:1127:56: warning: unused variable 'bAdd' [-Wunused-variable] static bool bFrame=TRUE,bZeroLine=FALSE,bYonce=FALSE,bAdd=FALSE; ^~~~ At top level: ../../../src/tools/gmx_xpm2ps.c:1127:56: warning: 'bAdd' defined but not used [-Wunused-variable] In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_xpm2ps.c:45: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_xpm2ps.c:42: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ ../../../src/tools/gmx_xpm2ps.c: In function 'ps_mat': ../../../src/tools/gmx_xpm2ps.c:346:22: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(buf,"%g",mat[i].axis_x[j]); ^ In file included from /usr/include/stdio.h:862, from ../../../include/string2.h:56, from ../../../src/tools/gmx_xpm2ps.c:41: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 2 and 14 bytes into a destination of size 12 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../src/tools/gmx_xpm2ps.c:374:22: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(buf,"%g",mat[i].axis_y[j]); ^ In file included from /usr/include/stdio.h:862, from ../../../include/string2.h:56, from ../../../src/tools/gmx_xpm2ps.c:41: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 2 and 14 bytes into a destination of size 12 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o editconf.o ../../../src/tools/editconf.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_trjconv.lo ../../../src/tools/gmx_trjconv.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_trjconv.c -fPIC -DPIC -o .libs/gmx_trjconv.o ../../../src/tools/gmx_trjconv.c: In function 'calc_pbc_cluster': ../../../src/tools/gmx_trjconv.c:89:34: warning: unused variable 'is' [-Wunused-variable] int m,i,j,j0,j1,jj,ai,iter,is; ^~ ../../../src/tools/gmx_trjconv.c: In function 'put_molecule_com_in_box': ../../../src/tools/gmx_trjconv.c:252:29: warning: unused variable 'dx' [-Wunused-variable] rvec com,new_com,shift,dx,box_center; ^~ ../../../src/tools/gmx_trjconv.c: In function 'put_residue_com_in_box': ../../../src/tools/gmx_trjconv.c:303:37: warning: variable 'res_nat' set but not used [-Wunused-but-set-variable] atom_id i, j, res_start, res_end, res_nat; ^~~~~~~ ../../../src/tools/gmx_trjconv.c: In function 'gmx_trjconv': ../../../src/tools/gmx_trjconv.c:726:16: warning: unused variable 'xdr' [-Wunused-variable] int xdr=0; ^~~ ../../../src/tools/gmx_trjconv.c:725:42: warning: unused variable 'command' [-Wunused-variable] char top_title[256],title[256],command[256],filemode[5]; ^~~~~~~ ../../../src/tools/gmx_trjconv.c:715:21: warning: variable 'bFitXY' set but not used [-Wunused-but-set-variable] bool bFit,bFitXY,bPFit,bReset; ^~~~~~ ../../../src/tools/gmx_trjconv.c:707:25: warning: unused variable 'gn_rms' [-Wunused-variable] char *gn_fit,*gn_rms; ^~~~~~ ../../../src/tools/gmx_trjconv.c:706:26: warning: unused variable 'ind_rms' [-Wunused-variable] atom_id *ind_fit,*ind_rms; ^~~~~~~ ../../../src/tools/gmx_trjconv.c:705:21: warning: unused variable 'irms' [-Wunused-variable] int ifit,irms,my_clust=-1; ^~~~ ../../../src/tools/gmx_trjconv.c:695:55: warning: unused variable 'nre' [-Wunused-variable] int m,i,d,frame,outframe,natoms,nout,ncent,nre,newstep=0,model_nr; ^~~ ../../../src/tools/gmx_trjconv.c:694:23: warning: unused variable 'lambda' [-Wunused-variable] real xtcpr, lambda,*w_rls=NULL; ^~~~~~ ../../../src/tools/gmx_trjconv.c:694:16: warning: unused variable 'xtcpr' [-Wunused-variable] real xtcpr, lambda,*w_rls=NULL; ^~~~~ ../../../src/tools/gmx_trjconv.c:693:49: warning: unused variable 'dx' [-Wunused-variable] rvec *xp=NULL,x_shift,hbox,box_center,dx; ^~ ../../../src/tools/gmx_trjconv.c:693:38: warning: unused variable 'box_center' [-Wunused-variable] rvec *xp=NULL,x_shift,hbox,box_center,dx; ^~~~~~~~~~ In file included from ../../../src/tools/gmx_trjconv.c:57: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_trjconv.c:57: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/tools/gmx_trjconv.c:53: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_trjconv.c:51: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_trjconv.c:47: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ ../../../src/tools/gmx_trjconv.c: In function 'gmx_trjconv': ../../../src/tools/gmx_trjconv.c:1325:46: warning: '%s' directive writing up to 255 bytes into a region of size 233 [-Wformat-overflow=] sprintf(title,"Generated by trjconv : %s t= %9.5f", ^~ top_title,fr.time); ~~~~~~~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../include/typedefs.h:52, from ../../../include/macros.h:49, from ../../../src/tools/gmx_trjconv.c:42: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 37 and 599 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../src/tools/gmx_trjconv.c:1336:20: warning: ' t= ' directive writing 4 bytes into a region of size between 1 and 256 [-Wformat-overflow=] sprintf(title,"%s t= %9.5f",top_title,frout.time); ^~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../include/typedefs.h:52, from ../../../include/macros.h:49, from ../../../src/tools/gmx_trjconv.c:42: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 14 and 576 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o genbox.o ../../../src/tools/genbox.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o eneconv.o ../../../src/tools/eneconv.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_wheel.lo ../../../src/tools/gmx_wheel.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_wheel.c -fPIC -DPIC -o .libs/gmx_wheel.o In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_wheel.c:55: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_wheel.c:52: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_wheel.c:49: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_wheel.c:49: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o genconf.o ../../../src/tools/genconf.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o genrestr.o ../../../src/tools/genrestr.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o edittop.lo ../../../src/tools/edittop.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/edittop.c -fPIC -DPIC -o .libs/edittop.o ../../../src/tools/edittop.c: In function 'delete_from_block': ../../../src/tools/edittop.c:104:17: warning: unused variable 'k' [-Wunused-variable] int i,i1,j1,j,k; ^ ../../../src/tools/edittop.c:104:12: warning: unused variable 'j1' [-Wunused-variable] int i,i1,j1,j,k; ^~ ../../../src/tools/edittop.c: In function 'delete_atom': ../../../src/tools/edittop.c:161:7: warning: unused variable 'k' [-Wunused-variable] int k; ^ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_nmtraj.o ../../../src/tools/g_nmtraj.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o trjcat.o ../../../src/tools/trjcat.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o calcpot.lo ../../../src/tools/calcpot.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/calcpot.c -fPIC -DPIC -o .libs/calcpot.o ../../../src/tools/calcpot.c: In function 'c_tabpot': ../../../src/tools/calcpot.c:79:8: warning: unused variable 'qqO' [-Wunused-variable] real qqO,qj; ^~~ ../../../src/tools/calcpot.c:78:43: warning: unused variable 'rinv2O' [-Wunused-variable] real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O; ^~~~~~ ../../../src/tools/calcpot.c:78:24: warning: unused variable 'fsO' [-Wunused-variable] real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O; ^~~ ../../../src/tools/calcpot.c:78:20: warning: unused variable 'vcO' [-Wunused-variable] real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O; ^~~ ../../../src/tools/calcpot.c:78:16: warning: unused variable 'tzO' [-Wunused-variable] real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O; ^~~ ../../../src/tools/calcpot.c:78:12: warning: unused variable 'tyO' [-Wunused-variable] real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O; ^~~ ../../../src/tools/calcpot.c:78:8: warning: unused variable 'txO' [-Wunused-variable] real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O; ^~~ ../../../src/tools/calcpot.c:76:28: warning: unused variable 'fzO' [-Wunused-variable] real fxJ,fyJ,fzJ,fxO,fyO,fzO; ^~~ ../../../src/tools/calcpot.c:76:24: warning: unused variable 'fyO' [-Wunused-variable] real fxJ,fyJ,fzJ,fxO,fyO,fzO; ^~~ ../../../src/tools/calcpot.c:76:20: warning: unused variable 'fxO' [-Wunused-variable] real fxJ,fyJ,fzJ,fxO,fyO,fzO; ^~~ ../../../src/tools/calcpot.c:76:16: warning: unused variable 'fzJ' [-Wunused-variable] real fxJ,fyJ,fzJ,fxO,fyO,fzO; ^~~ ../../../src/tools/calcpot.c:76:12: warning: unused variable 'fyJ' [-Wunused-variable] real fxJ,fyJ,fzJ,fxO,fyO,fzO; ^~~ ../../../src/tools/calcpot.c:76:8: warning: unused variable 'fxJ' [-Wunused-variable] real fxJ,fyJ,fzJ,fxO,fyO,fzO; ^~~ ../../../src/tools/calcpot.c:75:38: warning: unused variable 'ggid' [-Wunused-variable] int ii,k,n,jnr,ii3,nj0,nj1,is3,j3,ggid; ^~~~ ../../../src/tools/calcpot.c:71:50: warning: unused variable 'FF' [-Wunused-variable] real r1,r1t,fijC,eps,eps2,Y,F,Fp,Geps,Heps2,VV,FF; ^~ ../../../src/tools/calcpot.c:71:15: warning: unused variable 'fijC' [-Wunused-variable] real r1,r1t,fijC,eps,eps2,Y,F,Fp,Geps,Heps2,VV,FF; ^~~~ ../../../src/tools/calcpot.c:70:14: warning: unused variable 'two' [-Wunused-variable] const real two = 2.000000; ^~~ ../../../src/tools/calcpot.c: In function 'calc_pot': ../../../src/tools/calcpot.c:176:15: warning: variable 'box_size' set but not used [-Wunused-but-set-variable] rvec box_size; ^~~~~~~~ ../../../src/tools/calcpot.c: In function 'init_calcpot': ../../../src/tools/calcpot.c:238:12: warning: variable 'box_size' set but not used [-Wunused-but-set-variable] rvec box_size; ^~~~~~~~ In file included from ../../../src/tools/calcpot.c:46: At top level: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../src/tools/calcpot.c:40: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/calcpot.c:40: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_eneconv.lo ../../../src/tools/gmx_eneconv.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_eneconv.c -fPIC -DPIC -o .libs/gmx_eneconv.o ../../../src/tools/gmx_eneconv.c: In function 'gmx_eneconv': ../../../src/tools/gmx_eneconv.c:427:14: warning: unused variable 'ok' [-Wunused-variable] bool ok; ^~ ../../../src/tools/gmx_eneconv.c:426:35: warning: unused variable 'chptr' [-Wunused-variable] char inputstring[STRLEN],*chptr; ^~~~~ ../../../src/tools/gmx_eneconv.c:426:14: warning: unused variable 'inputstring' [-Wunused-variable] char inputstring[STRLEN],*chptr; ^~~~~~~~~~~ ../../../src/tools/gmx_eneconv.c:425:42: warning: unused variable 't1' [-Wunused-variable] real *readtime,*settime,timestep,t1,tadjust; ^~ ../../../src/tools/gmx_eneconv.c:421:42: warning: unused variable 'j' [-Wunused-variable] int nre,nremax,this_nre,nfile,i,j,kkk,nset,*set=NULL; ^ At top level: ../../../src/tools/gmx_eneconv.c:101:13: warning: 'same_time' defined but not used [-Wunused-function] static bool same_time(real t1,real t2) ^~~~~~~~~ In file included from ../../../src/tools/gmx_eneconv.c:48: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_eneconv.c:45: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o trjconv.o ../../../src/tools/trjconv.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o wheel.o ../../../src/tools/wheel.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o trjorder.o ../../../src/tools/trjorder.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xpm2ps.o ../../../src/tools/xpm2ps.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o genion.o ../../../src/tools/genion.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_analyze.o ../../../src/tools/g_analyze.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_anaeig.o ../../../src/tools/g_anaeig.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_angle.o ../../../src/tools/g_angle.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_bond.o ../../../src/tools/g_bond.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_bundle.o ../../../src/tools/g_bundle.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_vanhove.lo ../../../src/tools/gmx_vanhove.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_vanhove.c -fPIC -DPIC -o .libs/gmx_vanhove.o In file included from ../../../src/tools/gmx_vanhove.c:56: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../src/tools/gmx_vanhove.c:51: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_vanhove.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_vanhove.c:47: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_chi.o ../../../src/tools/g_chi.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_cluster.o ../../../src/tools/g_cluster.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_confrms.o ../../../src/tools/g_confrms.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_covar.o ../../../src/tools/g_covar.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o mk_angndx.o ../../../src/tools/mk_angndx.c In file included from ../../../include/statutil.h:51, from ../../../src/tools/mk_angndx.c:43: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/mk_angndx.c:42: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_current.o ../../../src/tools/g_current.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o addconf.lo ../../../src/tools/addconf.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/addconf.c -fPIC -DPIC -o .libs/addconf.o ../../../src/tools/addconf.c: In function 'do_nsgrid': ../../../src/tools/addconf.c:205:14: warning: variable 'box_size' set but not used [-Wunused-but-set-variable] rvec box_size; ^~~~~~~~ ../../../src/tools/addconf.c: In function 'add_conf': ../../../src/tools/addconf.c:328:23: warning: unused variable 'xpp' [-Wunused-variable] rvec dx,xi,xj,xpp,*x_all,*v_all; ^~~ ../../../src/tools/addconf.c:326:34: warning: unused variable 'dz1' [-Wunused-variable] int dx0,dx1,dy0,dy1,dz0,dz1; ^~~ ../../../src/tools/addconf.c:326:30: warning: unused variable 'dz0' [-Wunused-variable] int dx0,dx1,dy0,dy1,dz0,dz1; ^~~ ../../../src/tools/addconf.c:326:26: warning: unused variable 'dy1' [-Wunused-variable] int dx0,dx1,dy0,dy1,dz0,dz1; ^~~ ../../../src/tools/addconf.c:326:22: warning: unused variable 'dy0' [-Wunused-variable] int dx0,dx1,dy0,dy1,dz0,dz1; ^~~ ../../../src/tools/addconf.c:326:18: warning: unused variable 'dx1' [-Wunused-variable] int dx0,dx1,dy0,dy1,dz0,dz1; ^~~ ../../../src/tools/addconf.c:326:14: warning: unused variable 'dx0' [-Wunused-variable] int dx0,dx1,dy0,dy1,dz0,dz1; ^~~ ../../../src/tools/addconf.c:325:44: warning: unused variable 'maxincell' [-Wunused-variable] int prev,resnr,nresadd,d,k,ncells,maxincell; ^~~~~~~~~ ../../../src/tools/addconf.c:325:37: warning: unused variable 'ncells' [-Wunused-variable] int prev,resnr,nresadd,d,k,ncells,maxincell; ^~~~~~ ../../../src/tools/addconf.c:325:35: warning: unused variable 'k' [-Wunused-variable] int prev,resnr,nresadd,d,k,ncells,maxincell; ^ ../../../src/tools/addconf.c:325:33: warning: unused variable 'd' [-Wunused-variable] int prev,resnr,nresadd,d,k,ncells,maxincell; ^ ../../../src/tools/addconf.c:325:19: warning: unused variable 'resnr' [-Wunused-variable] int prev,resnr,nresadd,d,k,ncells,maxincell; ^~~~~ ../../../src/tools/addconf.c:324:47: warning: unused variable 'iprot' [-Wunused-variable] int i,j,jj,m,j0,j1,jjj,jnres,jnr,inr,iprot,is1,is2; ^~~~~ ../../../src/tools/addconf.c:324:21: warning: unused variable 'm' [-Wunused-variable] int i,j,jj,m,j0,j1,jjj,jnres,jnr,inr,iprot,is1,is2; ^ ../../../src/tools/addconf.c:324:18: warning: unused variable 'jj' [-Wunused-variable] int i,j,jj,m,j0,j1,jjj,jnres,jnr,inr,iprot,is1,is2; ^~ ../../../src/tools/addconf.c:322:47: warning: unused variable 'ib2' [-Wunused-variable] real max_vdw,*r_prot,*r_all,n2,r2,ib1,ib2; ^~~ ../../../src/tools/addconf.c:322:43: warning: unused variable 'ib1' [-Wunused-variable] real max_vdw,*r_prot,*r_all,n2,r2,ib1,ib2; ^~~ At top level: ../../../src/tools/addconf.c:70:13: warning: 'set_margin' defined but not used [-Wunused-function] static void set_margin(t_atoms *atoms, rvec *x, real *r) ^~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/tools/addconf.c:47: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/addconf.c:46: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../src/tools/addconf.c:42: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/addconf.c:42: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_density.o ../../../src/tools/g_density.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_densmap.o ../../../src/tools/g_densmap.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_dih.o ../../../src/tools/g_dih.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_dielectric.o ../../../src/tools/g_dielectric.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_helixorient.o ../../../src/tools/g_helixorient.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_principal.o ../../../src/tools/g_principal.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_disre.o ../../../src/tools/g_disre.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_dipoles.o ../../../src/tools/g_dipoles.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_dyndom.o ../../../src/tools/g_dyndom.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_dist.o ../../../src/tools/g_dist.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_enemat.o ../../../src/tools/g_enemat.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_energy.o ../../../src/tools/g_energy.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_filter.o ../../../src/tools/g_filter.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_lie.o ../../../src/tools/g_lie.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_gyrate.o ../../../src/tools/g_gyrate.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_h2order.o ../../../src/tools/g_h2order.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_hbond.o ../../../src/tools/g_hbond.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_helix.o ../../../src/tools/g_helix.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_mindist.o ../../../src/tools/g_mindist.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_morph.o ../../../src/tools/g_morph.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_msd.o ../../../src/tools/g_msd.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o anadock.o ../../../src/tools/anadock.c ../../../src/tools/anadock.c: In function 'rmsd_dist': ../../../src/tools/anadock.c:197:13: warning: variable 'dist' set but not used [-Wunused-but-set-variable] real rmsd,dist; ^~~~ In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/tools/anadock.c:47: At top level: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/anadock.c:46: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/anadock.c:46: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/tools/anadock.c:41: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ ../../../src/tools/anadock.c: In function 'main': ../../../src/tools/anadock.c:110:22: warning: '%d' directive writing between 1 and 10 bytes into a region of size between 0 and 255 [-Wformat-overflow=] sprintf(name,"%s_%d.pdb",buf,i+1); ^~ ../../../src/tools/anadock.c:110:18: note: directive argument in the range [1, 2147483647] sprintf(name,"%s_%d.pdb",buf,i+1); ^~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../include/typedefs.h:52, from ../../../include/confio.h:44, from ../../../src/tools/anadock.c:40: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 7 and 271 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_nmeig.o ../../../src/tools/g_nmeig.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_rama.o ../../../src/tools/g_rama.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_nmens.o ../../../src/tools/g_nmens.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_potential.o ../../../src/tools/g_potential.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_order.o ../../../src/tools/g_order.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_polystat.o ../../../src/tools/g_polystat.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_rdf.o ../../../src/tools/g_rdf.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_rms.o ../../../src/tools/g_rms.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_rmsdist.o ../../../src/tools/g_rmsdist.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_rmsf.o ../../../src/tools/g_rmsf.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_saltbr.o ../../../src/tools/g_saltbr.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_rotacf.o ../../../src/tools/g_rotacf.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_sgangle.o ../../../src/tools/g_sgangle.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_sham.o ../../../src/tools/g_sham.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_sorient.o ../../../src/tools/g_sorient.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_sas.o ../../../src/tools/g_sas.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_spol.o ../../../src/tools/g_spol.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_tcaf.o ../../../src/tools/g_tcaf.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_sdf.o ../../../src/tools/g_sdf.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_spatial.o ../../../src/tools/g_spatial.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_vanhove.o ../../../src/tools/g_vanhove.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_traj.o ../../../src/tools/g_traj.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_velacc.o ../../../src/tools/g_velacc.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_clustsize.o ../../../src/tools/g_clustsize.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_mdmat.o ../../../src/tools/g_mdmat.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_wham.o ../../../src/tools/g_wham.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_kinetics.o ../../../src/tools/g_kinetics.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o make_edi.o ../../../src/tools/make_edi.c ../../../src/tools/make_edi.c: In function 'sscan_list': ../../../src/tools/make_edi.c:185:14: warning: this 'else' clause does not guard... [-Wmisleading-indentation] else status=sError; break; ^~~~ ../../../src/tools/make_edi.c:185:34: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' else status=sError; break; ^~~~~ ../../../src/tools/make_edi.c: In function 'main': ../../../src/tools/make_edi.c:640:10: warning: variable 'bTop' set but not used [-Wunused-but-set-variable] bool bTop, bFit1; ^~~~ In file included from ../../../src/tools/make_edi.c:56: At top level: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/tools/make_edi.c:52: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/make_edi.c:50: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/make_edi.c:50: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/tools/make_edi.c:43: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sigeps.o ../../../src/tools/sigeps.c ../../../src/tools/sigeps.c: In function 'main': ../../../src/tools/sigeps.c:106:42: warning: unused variable 'pp' [-Wunused-variable] real qq,x,oldx,minimum,mval,dp[2],pp[2]; ^~ In file included from ../../../src/tools/sigeps.c:50: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/sigeps.c:50: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/tools/sigeps.c:47: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/tools/sigeps.c:44: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/sigeps.c:43: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o make_ndx.o ../../../src/tools/make_ndx.c In file included from ../../../src/tools/make_ndx.c:52: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/make_ndx.c:52: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/tools/make_ndx.c:48: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/make_ndx.c:46: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ ../../../src/tools/make_ndx.c: In function 'main': ../../../src/tools/make_ndx.c:994:20: warning: '_&_' directive writing 3 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(gname,"%s_&_%s",gname1,gname2); ^~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../src/tools/make_ndx.c:41: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 4 and 8194 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../src/tools/make_ndx.c:990:21: warning: '%s' directive writing up to 4095 bytes into a region of size between 0 and 4095 [-Wformat-overflow=] sprintf(gname,"%s_%s",gname1,gname2); ^~ ~~~~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../src/tools/make_ndx.c:41: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 2 and 8192 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -version-info 5:0:0 -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o libgmxana_mpi.la -rpath /usr/lib64 autocorr.lo expfit.lo polynomials.lo levenmar.lo anadih.lo pp2shift.lo dlist.lo eigio.lo lsq.lo cmat.lo eigensolver.lo nsc.lo hxprops.lo fitahx.lo gmx_analyze.lo gmx_anaeig.lo gmx_angle.lo gmx_bond.lo gmx_bundle.lo gmx_chi.lo gmx_cluster.lo gmx_confrms.lo gmx_covar.lo gmx_current.lo gmx_density.lo gmx_densmap.lo gmx_dih.lo gmx_dielectric.lo gmx_kinetics.lo gmx_spatial.lo gmx_dipoles.lo gmx_disre.lo gmx_dist.lo gmx_dyndom.lo gmx_enemat.lo gmx_energy.lo gmx_lie.lo gmx_filter.lo gmx_gyrate.lo gmx_h2order.lo gmx_hbond.lo gmx_helix.lo gmx_mindist.lo gmx_msd.lo gmx_morph.lo gmx_nmeig.lo gmx_nmens.lo gmx_order.lo gmx_principal.lo gmx_polystat.lo gmx_potential.lo gmx_rama.lo gmx_rdf.lo gmx_rms.lo gmx_rmsdist.lo gmx_rmsf.lo gmx_rotacf.lo gmx_saltbr.lo gmx_sas.lo gmx_sdf.lo gmx_sgangle.lo gmx_sorient.lo gmx_spol.lo gmx_tcaf.lo gmx_traj.lo gmx_velacc.lo gmx_helixorient.lo gmx_clustsize.lo gmx_mdmat.lo gmx_wham.lo correl.lo gmx_sham.lo gmx_nmtraj.lo gmx_trjconv.lo gmx_trjcat.lo gmx_trjorder.lo gmx_xpm2ps.lo gmx_editconf.lo gmx_genbox.lo gmx_genion.lo gmx_genconf.lo gmx_genpr.lo gmx_eneconv.lo gmx_vanhove.lo gmx_wheel.lo addconf.lo calcpot.lo edittop.lo ../gmxlib/libgmx_mpi.la ../mdlib/libmd_mpi.la -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte mpicc -shared .libs/autocorr.o .libs/expfit.o .libs/polynomials.o .libs/levenmar.o .libs/anadih.o .libs/pp2shift.o .libs/dlist.o .libs/eigio.o .libs/lsq.o .libs/cmat.o .libs/eigensolver.o .libs/nsc.o .libs/hxprops.o .libs/fitahx.o .libs/gmx_analyze.o .libs/gmx_anaeig.o .libs/gmx_angle.o .libs/gmx_bond.o .libs/gmx_bundle.o .libs/gmx_chi.o .libs/gmx_cluster.o .libs/gmx_confrms.o .libs/gmx_covar.o .libs/gmx_current.o .libs/gmx_density.o .libs/gmx_densmap.o .libs/gmx_dih.o .libs/gmx_dielectric.o .libs/gmx_kinetics.o .libs/gmx_spatial.o .libs/gmx_dipoles.o .libs/gmx_disre.o .libs/gmx_dist.o .libs/gmx_dyndom.o .libs/gmx_enemat.o .libs/gmx_energy.o .libs/gmx_lie.o .libs/gmx_filter.o .libs/gmx_gyrate.o .libs/gmx_h2order.o .libs/gmx_hbond.o .libs/gmx_helix.o .libs/gmx_mindist.o .libs/gmx_msd.o .libs/gmx_morph.o .libs/gmx_nmeig.o .libs/gmx_nmens.o .libs/gmx_order.o .libs/gmx_principal.o .libs/gmx_polystat.o .libs/gmx_potential.o .libs/gmx_rama.o .libs/gmx_rdf.o .libs/gmx_rms.o .libs/gmx_rmsdist.o .libs/gmx_rmsf.o .libs/gmx_rotacf.o .libs/gmx_saltbr.o .libs/gmx_sas.o .libs/gmx_sdf.o .libs/gmx_sgangle.o .libs/gmx_sorient.o .libs/gmx_spol.o .libs/gmx_tcaf.o .libs/gmx_traj.o .libs/gmx_velacc.o .libs/gmx_helixorient.o .libs/gmx_clustsize.o .libs/gmx_mdmat.o .libs/gmx_wham.o .libs/correl.o .libs/gmx_sham.o .libs/gmx_nmtraj.o .libs/gmx_trjconv.o .libs/gmx_trjcat.o .libs/gmx_trjorder.o .libs/gmx_xpm2ps.o .libs/gmx_editconf.o .libs/gmx_genbox.o .libs/gmx_genion.o .libs/gmx_genconf.o .libs/gmx_genpr.o .libs/gmx_eneconv.o .libs/gmx_vanhove.o .libs/gmx_wheel.o .libs/addconf.o .libs/calcpot.o .libs/edittop.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/lib64/openmpi/lib ../gmxlib/.libs/libgmx_mpi.so ../mdlib/.libs/libmd_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wl,-Rpath:/usr/lib64/openmpi/lib -Wl,-soname -Wl,libgmxana_mpi.so.5 -o .libs/libgmxana_mpi.so.5.0.0 (cd .libs && rm -f libgmxana_mpi.so.5 && ln -s libgmxana_mpi.so.5.0.0 libgmxana_mpi.so.5) (cd .libs && rm -f libgmxana_mpi.so && ln -s libgmxana_mpi.so.5.0.0 libgmxana_mpi.so) creating libgmxana_mpi.la (cd .libs && rm -f libgmxana_mpi.la && ln -s ../libgmxana_mpi.la libgmxana_mpi.la) make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o eneconv eneconv.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_eneconv.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/eneconv eneconv.o .libs/gmx_eneconv.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating eneconv make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_nmtraj g_nmtraj.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/eigio.o .libs/gmx_nmtraj.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_nmtraj g_nmtraj.o .libs/eigio.o .libs/gmx_nmtraj.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_nmtraj make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o editconf editconf.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_editconf.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/editconf editconf.o .libs/gmx_editconf.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating editconf make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o genrestr genrestr.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_genpr.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/genrestr genrestr.o .libs/gmx_genpr.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating genrestr make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o do_dssp do_dssp.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/do_dssp do_dssp.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating do_dssp make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o genbox genbox.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/addconf.o .libs/gmx_genbox.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/genbox genbox.o .libs/addconf.o .libs/gmx_genbox.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating genbox make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o genconf genconf.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_genconf.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/genconf genconf.o .libs/gmx_genconf.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating genconf make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o make_ndx make_ndx.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/make_ndx make_ndx.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating make_ndx make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o mk_angndx mk_angndx.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/mk_angndx mk_angndx.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating mk_angndx make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o wheel wheel.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_wheel.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/wheel wheel.o .libs/gmx_wheel.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating wheel make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o trjcat trjcat.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_trjcat.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/trjcat trjcat.o .libs/gmx_trjcat.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating trjcat make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o trjconv trjconv.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_trjconv.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/trjconv trjconv.o .libs/gmx_trjconv.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating trjconv make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o trjorder trjorder.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_trjorder.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/trjorder trjorder.o .libs/gmx_trjorder.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating trjorder make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o xpm2ps xpm2ps.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_xpm2ps.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/xpm2ps xpm2ps.o .libs/gmx_xpm2ps.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating xpm2ps make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o anadock anadock.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/lsq.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/anadock anadock.o .libs/lsq.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating anadock make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o genion genion.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/calcpot.o .libs/gmx_genion.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/genion genion.o .libs/calcpot.o .libs/gmx_genion.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating genion make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o make_edi make_edi.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/eigio.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/make_edi make_edi.o .libs/eigio.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating make_edi make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_anaeig g_anaeig.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/eigio.o .libs/gmx_anaeig.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_anaeig g_anaeig.o .libs/eigio.o .libs/gmx_anaeig.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_anaeig make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_angle g_angle.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/dlist.o .libs/anadih.o .libs/gmx_angle.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_angle g_angle.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/dlist.o .libs/anadih.o .libs/gmx_angle.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_angle make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_bundle g_bundle.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_bundle.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_bundle g_bundle.o .libs/gmx_bundle.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_bundle make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_bond g_bond.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/lsq.o .libs/gmx_bond.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_bond g_bond.o .libs/lsq.o .libs/gmx_bond.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_bond make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_analyze g_analyze.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_hbond.o .libs/gmx_analyze.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_analyze g_analyze.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_hbond.o .libs/gmx_analyze.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_analyze make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_cluster g_cluster.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/eigensolver.o .libs/cmat.o .libs/gmx_cluster.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_cluster g_cluster.o .libs/eigensolver.o .libs/cmat.o .libs/gmx_cluster.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_cluster make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_chi g_chi.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/pp2shift.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/dlist.o .libs/anadih.o .libs/gmx_chi.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_chi g_chi.o .libs/pp2shift.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/dlist.o .libs/anadih.o .libs/gmx_chi.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_chi make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_confrms g_confrms.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_confrms.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_confrms g_confrms.o .libs/gmx_confrms.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_confrms make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_current g_current.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_current.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_current g_current.o .libs/gmx_current.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_current make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_covar g_covar.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/eigensolver.o .libs/eigio.o .libs/gmx_covar.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_covar g_covar.o .libs/eigensolver.o .libs/eigio.o .libs/gmx_covar.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_covar make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_densmap g_densmap.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_densmap.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_densmap g_densmap.o .libs/gmx_densmap.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_densmap make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_dih g_dih.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_dih.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_dih g_dih.o .libs/gmx_dih.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_dih make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_helixorient g_helixorient.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_helixorient.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_helixorient g_helixorient.o .libs/gmx_helixorient.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_helixorient make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_density g_density.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_density.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_density g_density.o .libs/gmx_density.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_density make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_dielectric g_dielectric.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_dielectric.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_dielectric g_dielectric.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_dielectric.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_dielectric make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_principal g_principal.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_principal.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_principal g_principal.o .libs/gmx_principal.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_principal make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_dipoles g_dipoles.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/lsq.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_dipoles.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_dipoles g_dipoles.o .libs/lsq.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_dipoles.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_dipoles make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_dist g_dist.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_dist.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_dist g_dist.o .libs/gmx_dist.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_dist make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_dyndom g_dyndom.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_dyndom.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_dyndom g_dyndom.o .libs/gmx_dyndom.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_dyndom make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_disre g_disre.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_disre.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_disre g_disre.o .libs/gmx_disre.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_disre make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_enemat g_enemat.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_enemat.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_enemat g_enemat.o .libs/gmx_enemat.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_enemat make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_energy g_energy.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_energy.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_energy g_energy.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_energy.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_energy make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_lie g_lie.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_lie.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_lie g_lie.o .libs/gmx_lie.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_lie make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_filter g_filter.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_filter.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_filter g_filter.o .libs/gmx_filter.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_filter make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_gyrate g_gyrate.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_gyrate.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_gyrate g_gyrate.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_gyrate.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_gyrate make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_h2order g_h2order.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_h2order.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_h2order g_h2order.o .libs/gmx_h2order.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_h2order make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_helix g_helix.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/hxprops.o .libs/fitahx.o .libs/gmx_helix.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_helix g_helix.o .libs/hxprops.o .libs/fitahx.o .libs/gmx_helix.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_helix make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_mindist g_mindist.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_mindist.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_mindist g_mindist.o .libs/gmx_mindist.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_mindist make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_msd g_msd.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/lsq.o .libs/gmx_msd.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_msd g_msd.o .libs/lsq.o .libs/gmx_msd.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_msd make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_morph g_morph.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_morph.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_morph g_morph.o .libs/gmx_morph.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_morph make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_hbond g_hbond.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_hbond.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_hbond g_hbond.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_hbond.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_hbond make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_nmeig g_nmeig.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/eigensolver.o .libs/eigio.o .libs/gmx_nmeig.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_nmeig g_nmeig.o .libs/eigensolver.o .libs/eigio.o .libs/gmx_nmeig.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_nmeig make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_nmens g_nmens.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/eigensolver.o .libs/eigio.o .libs/gmx_nmens.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_nmens g_nmens.o .libs/eigensolver.o .libs/eigio.o .libs/gmx_nmens.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_nmens make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_potential g_potential.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_potential.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_potential g_potential.o .libs/gmx_potential.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_potential make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_order g_order.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_order.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_order g_order.o .libs/gmx_order.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_order make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_polystat g_polystat.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_polystat.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_polystat g_polystat.o .libs/gmx_polystat.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_polystat make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_rama g_rama.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_rama.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_rama g_rama.o .libs/gmx_rama.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_rama make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_rdf g_rdf.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_rdf.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_rdf g_rdf.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_rdf.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_rdf make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_rms g_rms.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/cmat.o .libs/gmx_rms.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_rms g_rms.o .libs/cmat.o .libs/gmx_rms.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_rms make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_rmsdist g_rmsdist.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_rmsdist.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_rmsdist g_rmsdist.o .libs/gmx_rmsdist.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_rmsdist make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_rmsf g_rmsf.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/eigensolver.o .libs/gmx_rmsf.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_rmsf g_rmsf.o .libs/eigensolver.o .libs/gmx_rmsf.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_rmsf make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_saltbr g_saltbr.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_saltbr.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_saltbr g_saltbr.o .libs/gmx_saltbr.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_saltbr make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_rotacf g_rotacf.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_rotacf.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_rotacf g_rotacf.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_rotacf.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_rotacf make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_sas g_sas.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/nsc.o .libs/gmx_sas.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_sas g_sas.o .libs/nsc.o .libs/gmx_sas.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_sas make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_sgangle g_sgangle.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_sgangle.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_sgangle g_sgangle.o .libs/gmx_sgangle.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_sgangle make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_sham g_sham.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_sham.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_sham g_sham.o .libs/gmx_sham.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_sham make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_sorient g_sorient.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_sorient.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_sorient g_sorient.o .libs/gmx_sorient.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_sorient make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_spol g_spol.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_spol.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_spol g_spol.o .libs/gmx_spol.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_spol make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_sdf g_sdf.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_sdf.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_sdf g_sdf.o .libs/gmx_sdf.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_sdf make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_spatial g_spatial.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_spatial.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_spatial g_spatial.o .libs/gmx_spatial.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_spatial make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_traj g_traj.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_traj.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_traj g_traj.o .libs/gmx_traj.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_traj make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_vanhove g_vanhove.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_vanhove.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_vanhove g_vanhove.o .libs/gmx_vanhove.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_vanhove make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_tcaf g_tcaf.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_tcaf.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_tcaf g_tcaf.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_tcaf.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_tcaf make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_velacc g_velacc.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_velacc.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_velacc g_velacc.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_velacc.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_velacc make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_clustsize g_clustsize.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_clustsize.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_clustsize g_clustsize.o .libs/gmx_clustsize.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_clustsize make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_mdmat g_mdmat.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_mdmat.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_mdmat g_mdmat.o .libs/gmx_mdmat.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_mdmat make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_wham g_wham.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_wham.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_wham g_wham.o .libs/gmx_wham.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_wham make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o sigeps sigeps.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/sigeps sigeps.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating sigeps make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_kinetics g_kinetics.o libgmxana_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la .libs/gmx_kinetics.o -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_kinetics g_kinetics.o .libs/gmx_kinetics.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi.so ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_kinetics make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' Making all in ngmx make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx' mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xmb.o ../../../src/ngmx/xmb.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx' mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xutil.o ../../../src/ngmx/xutil.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx' mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ngmx.o ../../../src/ngmx/ngmx.c ../../../src/ngmx/ngmx.c: In function 'dump_xw': ../../../src/ngmx/ngmx.c:68:8: warning: variable 'rc' set but not used [-Wunused-but-set-variable] int rc; ^~ ../../../src/ngmx/ngmx.c: In function 'init_gmx': ../../../src/ngmx/ngmx.c:354:35: warning: unused variable 'nre' [-Wunused-variable] int step,natom,nre,natom_trx; ^~~ At top level: ../../../src/ngmx/ngmx.c:65:13: warning: 'dump_xw' defined but not used [-Wunused-function] static void dump_xw(char *dispname,Window w,char *fn) ^~~~~~~ In file included from ../../../src/ngmx/ngmx.c:52: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/ngmx/ngmx.c:49: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx' mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o popup.o ../../../src/ngmx/popup.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx' mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o x11.o ../../../src/ngmx/x11.c ../../../src/ngmx/x11.c:265:13: warning: 'Xrm' defined but not used [-Wunused-function] static void Xrm(int *argc, char *argv[]) ^~~ ../../../src/ngmx/x11.c:132:13: warning: 'TestEvent' defined but not used [-Wunused-function] static Bool TestEvent(Display *disp,XEvent *event,char *arg) ^~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx' mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o fgrid.o ../../../src/ngmx/fgrid.c ../../../src/ngmx/fgrid.c: In function 'GetBuf': ../../../src/ngmx/fgrid.c:101:7: warning: variable 'rc' set but not used [-Wunused-but-set-variable] int rc; ^~ ../../../src/ngmx/fgrid.c: In function 'FGridFromFile': ../../../src/ngmx/fgrid.c:346:8: warning: unused variable 'newinfile' [-Wunused-variable] char newinfile[STRLEN]; ^~~~~~~~~ ../../../src/ngmx/fgrid.c:345:9: warning: unused variable 'gmxlib' [-Wunused-variable] char *gmxlib; ^~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx' mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xdlghi.o ../../../src/ngmx/xdlghi.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx' mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pulldown.o ../../../src/ngmx/pulldown.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx' mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xdlgitem.o ../../../src/ngmx/xdlgitem.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx' mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nleg.o ../../../src/ngmx/nleg.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx' mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o buttons.o ../../../src/ngmx/buttons.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx' mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o logo.o ../../../src/ngmx/logo.c In file included from ../../../src/ngmx/logo.c:45: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx' mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dialogs.o ../../../src/ngmx/dialogs.c ../../../src/ngmx/dialogs.c:373:13: warning: 'in_set' defined but not used [-Wunused-function] static bool in_set(int i,int n,int set[]) ^~~~~~ ../../../src/ngmx/dialogs.c:240:13: warning: 'Extract' defined but not used [-Wunused-function] static void Extract(t_dlg *dlg,int ID,char *buf) ^~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx' mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o filter.o ../../../src/ngmx/filter.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx' mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o manager.o ../../../src/ngmx/manager.c ../../../src/ngmx/manager.c: In function 'set_file': ../../../src/ngmx/manager.c:182:18: warning: unused variable 'idum' [-Wunused-variable] int i,idum; ^~~~ ../../../src/ngmx/manager.c: In function 'step_man': ../../../src/ngmx/manager.c:312:15: warning: unused variable 'dum' [-Wunused-variable] int dum; ^~~ ../../../src/ngmx/manager.c:311:15: warning: unused variable 'rdum' [-Wunused-variable] real rdum; ^~~~ In file included from ../../../src/ngmx/manager.c:57: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/ngmx/manager.c:56: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/ngmx/manager.c:55: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/ngmx/manager.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ ../../../src/ngmx/manager.c: In function 'set_file': ../../../src/ngmx/manager.c:213:20: warning: '%s' directive writing up to 255 bytes into a region of size 254 [-Wformat-overflow=] sprintf(buf,"%s: %s",*man->top.name,quote); ^~ ~~~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../src/ngmx/manager.c:40: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 3 or more bytes (assuming 258) into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx' mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xdlg.o ../../../src/ngmx/xdlg.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx' mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nmol.o ../../../src/ngmx/nmol.c ../../../src/ngmx/nmol.c: In function 'draw_box': ../../../src/ngmx/nmol.c:422:23: warning: unused variable 'tv2' [-Wunused-variable] iv2 vec2[NCUCEDGE],tv2; ^~~ In file included from ../../../src/ngmx/nmol.c:51: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/ngmx/nmol.c:51: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx' mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o molps.o ../../../src/ngmx/molps.c ../../../src/ngmx/molps.c: In function 'ps_draw_mol': ../../../src/ngmx/molps.c:204:15: warning: unused variable 'ntime' [-Wunused-variable] static int ntime=0; ^~~~~ ../../../src/ngmx/molps.c:203:15: warning: unused variable 'tstr' [-Wunused-variable] static char tstr[2][20]; ^~~~ At top level: ../../../src/ngmx/molps.c:203:15: warning: 'tstr' defined but not used [-Wunused-variable] ../../../src/ngmx/molps.c:204:15: warning: 'ntime' defined but not used [-Wunused-variable] static int ntime=0; ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx' mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xrama.o ../../../src/ngmx/xrama.c ../../../src/ngmx/xrama.c: In function 'main': ../../../src/ngmx/xrama.c:319:15: warning: variable 'ramatop' set but not used [-Wunused-but-set-variable] t_topology *ramatop; ^~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/ngmx/xrama.c:50: At top level: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/ngmx/xrama.c:44: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx' mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o highway.o ../../../src/ngmx/highway.c In file included from ../../../include/statutil.h:51, from ../../../src/ngmx/highway.c:47: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/ngmx/highway.c:46: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o ngmx ngmx.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath mkdir .libs DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/ngmx ngmx.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o -lgslcblas ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath creating ngmx make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o xrama xrama.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/xrama xrama.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o -lgslcblas ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath creating xrama make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o highway highway.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/highway highway.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o -lgslcblas ../mdlib/.libs/libmd_mpi.so ../gmxlib/.libs/libgmx_mpi.so -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath creating highway make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx' Making all in contrib make[3]: Nothing to be done for 'all'. Making all in admin make[1]: Nothing to be done for 'all'. Making all in scripts make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/scripts' cat ../../scripts/GMXRC.in | sed 's,@bindir\@,/usr/bin,' > GMXRC make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/scripts' make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/scripts' cat ../../scripts/GMXRC.csh.in | sed 's,@libdir\@,/usr/lib64,' | \ sed 's,@bindir\@,/usr/bin,' | \ sed 's,@datadir\@,/usr/share,' | \ sed 's,@mandir\@,/usr/share/man,' > GMXRC.csh make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/scripts' make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/scripts' cat ../../scripts/GMXRC.bash.in | sed 's,@libdir\@,/usr/lib64,' | \ sed 's,@bindir\@,/usr/bin,' | \ sed 's,@datadir\@,/usr/share,' | \ sed 's,@mandir\@,/usr/share/man,' > GMXRC.bash make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/scripts' make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/scripts' cat ../../scripts/GMXRC.zsh.in | sed 's,@libdir\@,/usr/lib64,' | \ sed 's,@bindir\@,/usr/bin,' | \ sed 's,@datadir\@,/usr/share,' | \ sed 's,@mandir\@,/usr/share/man,' > GMXRC.zsh make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/scripts' Making all in share Making all in top make[2]: Nothing to be done for 'all'. Making all in tutor Making all in nmr1 make[3]: Nothing to be done for 'all'. Making all in nmr2 make[3]: Nothing to be done for 'all'. Making all in speptide make[3]: Nothing to be done for 'all'. Making all in water make[3]: Nothing to be done for 'all'. Making all in gmxdemo make[3]: Nothing to be done for 'all'. Making all in methanol make[3]: Nothing to be done for 'all'. Making all in mixed make[3]: Nothing to be done for 'all'. make[3]: Nothing to be done for 'all-am'. Making all in template make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/template' cat ../../../share/template/Template.mak | \ sed 's,@LDFLAGS\@,-L/usr/lib64 -lgslcblas ,' | \ sed 's,@LIBS\@,-lmd_mpi -lgmx_mpi -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath ,' | \ sed 's,@CFLAGS\@,-g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -I/usr/include -I/usr/include/gromacs,' | \ sed 's,@CC\@,mpicc,' | \ sed 's,@host\@,x86_64-alt-linux-gnu,' >Makefile.x86_64-alt-linux-gnu sed: -e expression #1, char 36: unknown option to `s' make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/template' Making all in html Making all in . make[3]: Nothing to be done for 'all-am'. Making all in images make[3]: Nothing to be done for 'all'. Making all in online make[3]: Nothing to be done for 'all'. make[2]: Nothing to be done for 'all-am'. Making all in man Making all in man1 make[2]: Nothing to be done for 'all'. make[2]: Nothing to be done for 'all-am'. make[1]: Nothing to be done for 'all-am'. + popd ~/RPM/BUILD/gromacs-4.0.7 + mkdir mpi-double + pushd mpi-double ~/RPM/BUILD/gromacs-4.0.7/mpi-double ~/RPM/BUILD/gromacs-4.0.7 + buildThis double enable _mpi_d + ln -s ../configure . + CFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2' + export CFLAGS + CXXFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2' + export CXXFLAGS + FFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2' + export FFLAGS + FCFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2' + export FCFLAGS + '[' -n '' ']' ++ printf %s '-pipe -frecord-gcc-switches -Wall -g -O2' ++ sed -r 's/(^|[[:space:]]+)-[^m][^[:space:]]*//g' + ASFLAGS= + export ASFLAGS + export lt_cv_prog_cc_static_works=no + lt_cv_prog_cc_static_works=no + export lt_cv_deplibs_check_method=pass_all + lt_cv_deplibs_check_method=pass_all + readlink -e -- ./configure + xargs -ri dirname -- '{}' + xargs -ri find '{}' -type f '(' -name config.sub -or -name config.guess ')' -printf '%h/\n' + sort -u + xargs -rn1 install -pm755 -- /usr/share/gnu-config/config.sub /usr/share/gnu-config/config.guess + ./configure --build=x86_64-alt-linux --host=x86_64-alt-linux --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/lib --localstatedir=/var/lib --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --disable-dependency-tracking --disable-silent-rules --without-included-gettext --disable-rpath --enable-static=no --enable-shared --enable-double --enable-mpi --enable-prefetch-forces --enable-fortran --with-gnu-ld --with-fft=fftw3 --with-x --with-gsl --enable-mpi --program-suffix=_mpi_d --with-external-blas=-lopenblas configure: WARNING: unrecognized options: --without-included-gettext, --disable-rpath, --enable-prefetch-forces checking build system type... x86_64-alt-linux-gnu checking host system type... x86_64-alt-linux-gnu checking for a BSD-compatible install... /bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether UID '619' is supported by ustar format... yes checking whether GID '619' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar checking for x86_64-alt-linux-cc... no checking for x86_64-alt-linux-icc... no checking for x86_64-alt-linux-xlc... no checking for x86_64-alt-linux-gcc... x86_64-alt-linux-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether x86_64-alt-linux-gcc accepts -g... yes checking for x86_64-alt-linux-gcc option to accept ISO C89... none needed checking whether x86_64-alt-linux-gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of x86_64-alt-linux-gcc... none checking for x86_64-alt-linux-f77... no checking for x86_64-alt-linux-ifort... no checking for x86_64-alt-linux-xlf... no checking for x86_64-alt-linux-xlf77... no checking for x86_64-alt-linux-cf77... no checking for x86_64-alt-linux-fl32... no checking for x86_64-alt-linux-g77... no checking for x86_64-alt-linux-fort77... no checking for x86_64-alt-linux-f90... no checking for x86_64-alt-linux-xlf90... no checking for x86_64-alt-linux-pgf77... no checking for x86_64-alt-linux-cf77... no checking for x86_64-alt-linux-fort... no checking for x86_64-alt-linux-fort77... no checking for x86_64-alt-linux-pgf90... no checking for f77... f77 checking whether we are using the GNU Fortran 77 compiler... yes checking whether f77 accepts -g... yes checking dependency style of x86_64-alt-linux-gcc... none checking for mpxlc... no checking for mpicc... mpicc checking whether the MPI cc command works... yes checking for catamount... no checking how to get verbose linking output from f77... -v checking for Fortran 77 libraries of f77... -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath checking for dummy main to link with Fortran 77 libraries... none checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore checking how to run the C preprocessor... mpicc -E checking whether mpicc accepts -O3... yes checking whether mpicc accepts -funroll-all-loops... yes ****************************************** * Using CFLAGS from environment variable * ****************************************** ****************************************** * Using FFLAGS from environment variable * ****************************************** checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking whether byte ordering is bigendian... no checking size of int... 4 checking size of long int... 8 checking size of long long int... 8 checking size of off_t... 8 checking that size_t can hold pointers... yes checking floating-point format... IEEE754 (little-endian byte and word order) checking whether ln -s works... yes checking whether make sets $(MAKE)... (cached) yes checking for a sed that does not truncate output... /bin/sed checking for ld used by mpicc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for /usr/bin/ld option to reload object files... -r checking for BSD-compatible nm... /usr/bin/nm -B checking how to recognise dependent libraries... (cached) pass_all checking dlfcn.h usability... yes checking dlfcn.h presence... yes checking for dlfcn.h... yes checking for x86_64-alt-linux-g++... x86_64-alt-linux-g++ checking whether we are using the GNU C++ compiler... yes checking whether x86_64-alt-linux-g++ accepts -g... yes checking dependency style of x86_64-alt-linux-g++... none checking how to run the C++ preprocessor... x86_64-alt-linux-g++ -E checking the maximum length of command line arguments... 32768 checking command to parse /usr/bin/nm -B output from mpicc object... ok checking for objdir... .libs checking for x86_64-alt-linux-ar... no checking for ar... ar checking for x86_64-alt-linux-ranlib... no checking for ranlib... ranlib checking for x86_64-alt-linux-strip... no checking for strip... strip checking if mpicc supports -fno-rtti -fno-exceptions... no checking for mpicc option to produce PIC... -fPIC checking if mpicc PIC flag -fPIC works... yes checking if mpicc static flag -static works... no checking if mpicc supports -c -o file.o... yes checking whether the mpicc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... cat: '/etc/ld.so.conf.d/*.conf': No such file or directory GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no configure: creating libtool appending configuration tag "CXX" to libtool checking for ld used by x86_64-alt-linux-g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the x86_64-alt-linux-g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for x86_64-alt-linux-g++ option to produce PIC... -fPIC checking if x86_64-alt-linux-g++ PIC flag -fPIC works... yes checking if x86_64-alt-linux-g++ static flag -static works... no checking if x86_64-alt-linux-g++ supports -c -o file.o... yes checking whether the x86_64-alt-linux-g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... cat: '/etc/ld.so.conf.d/*.conf': No such file or directory GNU/Linux ld.so checking how to hardcode library paths into programs... immediate appending configuration tag "F77" to libtool checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for f77 option to produce PIC... -fPIC checking if f77 PIC flag -fPIC works... yes checking if f77 static flag -static works... no checking if f77 supports -c -o file.o... yes checking whether the f77 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... cat: '/etc/ld.so.conf.d/*.conf': No such file or directory GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for _LARGEFILE_SOURCE value needed for large files... no checking for sqrt in -lm... yes checking for fftw3.h... yes checking for main in -lfftw3... yes checking rpc/rpc.h usability... yes checking rpc/rpc.h presence... yes checking for rpc/rpc.h... yes checking for rpc/xdr.h... yes checking for xdr_float in -lnsl... no checking for working memcmp... yes checking return type of signal handlers... void checking for off_t... yes checking for vprintf... yes checking for _doprnt... no checking if malloc debugging is wanted... no checking for strcasecmp... yes checking for strdup... yes checking for bool... no checking size of int... (cached) 4 checking size of long int... (cached) 8 checking size of long long int... (cached) 8 checking size of off_t... (cached) 8 checking size of void*... 8 checking for X... libraries , headers checking for gethostbyname... yes checking for connect... yes checking for remove... yes checking for shmat... yes checking for IceConnectionNumber in -lICE... yes checking gsl/gsl_version.h usability... yes checking gsl/gsl_version.h presence... yes checking for gsl/gsl_version.h... yes checking for main in -lgslcblas... yes checking for main in -lgsl... yes checking libxml/parser.h usability... no checking libxml/parser.h presence... no checking for libxml/parser.h... no checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking for strings.h... (cached) yes checking for unistd.h... (cached) yes checking for unistd.h... (cached) yes checking for an ANSI C-conforming const... yes checking for size_t... yes checking whether struct tm is in sys/time.h or time.h... time.h checking for uid_t in sys/types.h... yes checking for inline... inline checking whether your compiler can handle assembly files (*.s)... yes checking whether as fully supports X86_64 SSE2... yes checking whether byte ordering is bigendian... (cached) no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating src/gmxlib/Makefile config.status: creating src/gmxlib/gmx_blas/Makefile config.status: creating src/gmxlib/gmx_lapack/Makefile config.status: creating src/gmxlib/nonbonded/Makefile config.status: creating src/gmxlib/nonbonded/nb_kernel/Makefile config.status: creating src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/Makefile config.status: creating src/gmxlib/nonbonded/nb_kernel_ia32_sse/Makefile config.status: creating src/gmxlib/nonbonded/nb_kernel_ia32_sse2/Makefile config.status: creating src/gmxlib/nonbonded/nb_kernel_x86_64_sse/Makefile config.status: creating src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/Makefile config.status: creating src/gmxlib/nonbonded/nb_kernel_ppc_altivec/Makefile config.status: creating src/gmxlib/nonbonded/nb_kernel_ia64_single/Makefile config.status: creating src/gmxlib/nonbonded/nb_kernel_ia64_double/Makefile config.status: creating src/gmxlib/nonbonded/nb_kernel_bluegene/Makefile config.status: creating include/Makefile config.status: creating include/types/Makefile config.status: creating src/mdlib/Makefile config.status: creating src/kernel/Makefile config.status: creating src/tools/Makefile config.status: creating src/ngmx/Makefile config.status: creating src/contrib/Makefile config.status: creating scripts/Makefile config.status: creating admin/Makefile config.status: creating share/Makefile config.status: creating share/tutor/Makefile config.status: creating share/tutor/gmxdemo/Makefile config.status: creating share/tutor/nmr1/Makefile config.status: creating share/tutor/nmr2/Makefile config.status: creating share/tutor/water/Makefile config.status: creating share/tutor/mixed/Makefile config.status: creating share/tutor/methanol/Makefile config.status: creating share/tutor/speptide/Makefile config.status: creating share/template/Makefile config.status: creating share/top/Makefile config.status: creating share/html/Makefile config.status: creating share/html/images/Makefile config.status: creating share/html/online/Makefile config.status: creating man/Makefile config.status: creating man/man1/Makefile config.status: creating src/config.h config.status: executing depfiles commands configure: WARNING: unrecognized options: --without-included-gettext, --disable-rpath, --enable-prefetch-forces + sed -i 's|^hardcode_libdir_flag_spec=.*|hardcode_libdir_flag_spec=""|g' libtool + sed -i 's|^runpath_var=LD_RUN_PATH|runpath_var=DIE_RPATH_DIE|g' libtool + make -j8 Making all in include Making all in . make[2]: Nothing to be done for 'all-am'. Making all in types make[2]: Nothing to be done for 'all'. Making all in src make all-recursive Making all in gmxlib Making all in nonbonded Making all in nb_kernel_x86_64_sse2 make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel010_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel010_x86_64_sse2.s mkdir .libs mkdir: cannot create directory '.libs': File exists mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel010_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel010_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel100_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel100_x86_64_sse2.s mkdir .libs mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel100_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel100_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel110_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel110_x86_64_sse2.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel110_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel110_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel030_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel030_x86_64_sse2.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel030_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel030_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel103_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel103_x86_64_sse2.s mkdir .libs mkdir: cannot create directory '.libs': File exists mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel103_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel103_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel102_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel102_x86_64_sse2.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel102_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel102_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel101_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel101_x86_64_sse2.s mkdir .libs mkdir: cannot create directory '.libs': File exists mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel101_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel101_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel104_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel104_x86_64_sse2.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel104_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel104_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel113_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel113_x86_64_sse2.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel113_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel113_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel132_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel132_x86_64_sse2.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel132_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel132_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel111_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel111_x86_64_sse2.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel111_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel111_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel114_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel114_x86_64_sse2.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel114_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel114_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel130_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel130_x86_64_sse2.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel130_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel130_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel133_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel133_x86_64_sse2.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel133_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel133_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel112_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel112_x86_64_sse2.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel112_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel112_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel131_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel131_x86_64_sse2.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel131_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel131_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel200_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel200_x86_64_sse2.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel200_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel200_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel201_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel201_x86_64_sse2.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel201_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel201_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel202_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel202_x86_64_sse2.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel202_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel202_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel134_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel134_x86_64_sse2.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel134_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel134_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel210_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel210_x86_64_sse2.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel210_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel210_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel203_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel203_x86_64_sse2.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel203_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel203_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel204_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel204_x86_64_sse2.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel204_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel204_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel211_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel211_x86_64_sse2.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel211_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel211_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel212_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel212_x86_64_sse2.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel212_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel212_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel213_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel213_x86_64_sse2.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel213_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel213_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel230_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel230_x86_64_sse2.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel230_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel230_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel231_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel231_x86_64_sse2.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel231_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel231_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel214_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel214_x86_64_sse2.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel214_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel214_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel233_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel233_x86_64_sse2.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel233_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel233_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel232_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel232_x86_64_sse2.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel232_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel232_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel234_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel234_x86_64_sse2.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel234_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel234_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel300_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel300_x86_64_sse2.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel300_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel300_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel301_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel301_x86_64_sse2.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel301_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel301_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel303_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel303_x86_64_sse2.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel303_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel303_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel302_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel302_x86_64_sse2.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel302_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel302_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel304_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel304_x86_64_sse2.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel304_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel304_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel310_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel310_x86_64_sse2.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel310_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel310_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel311_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel311_x86_64_sse2.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel311_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel311_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel312_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel312_x86_64_sse2.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel312_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel312_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel313_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel313_x86_64_sse2.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel313_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel313_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel314_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel314_x86_64_sse2.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel314_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel314_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel330_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel330_x86_64_sse2.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel330_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel330_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel331_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel331_x86_64_sse2.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel331_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel331_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel332_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel332_x86_64_sse2.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel332_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel332_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel400_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel400_x86_64_sse2.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel400_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel400_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel333_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel333_x86_64_sse2.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel333_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel333_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel334_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel334_x86_64_sse2.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel334_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel334_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel410_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel410_x86_64_sse2.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel410_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel410_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel430_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel430_x86_64_sse2.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel430_x86_64_sse2.s -fPIC -DPIC -o .libs/nb_kernel430_x86_64_sse2.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --mode=compile mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel_x86_64_sse2_test.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel_x86_64_sse2_test.s mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel_x86_64_sse2_test.s -fPIC -DPIC -o .libs/nb_kernel_x86_64_sse2_test.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2 -I../../../../src -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel_x86_64_sse2.lo ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel_x86_64_sse2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2 -I../../../../src -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel_x86_64_sse2.c -fPIC -DPIC -o .libs/nb_kernel_x86_64_sse2.o ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel_x86_64_sse2.c: In function 'nb_kernel_x86_64_sse2_test': ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel_x86_64_sse2.c:206:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if(log) ^~ ../../../../../src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/nb_kernel_x86_64_sse2.c:209:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' nb_kernel_x86_64_sse2_present = TRUE; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' /bin/sh ../../../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o libnb_kernel_x86_64_sse2.la nb_kernel010_x86_64_sse2.lo nb_kernel030_x86_64_sse2.lo nb_kernel100_x86_64_sse2.lo nb_kernel101_x86_64_sse2.lo nb_kernel102_x86_64_sse2.lo nb_kernel103_x86_64_sse2.lo nb_kernel104_x86_64_sse2.lo nb_kernel110_x86_64_sse2.lo nb_kernel111_x86_64_sse2.lo nb_kernel112_x86_64_sse2.lo nb_kernel113_x86_64_sse2.lo nb_kernel114_x86_64_sse2.lo nb_kernel130_x86_64_sse2.lo nb_kernel131_x86_64_sse2.lo nb_kernel132_x86_64_sse2.lo nb_kernel133_x86_64_sse2.lo nb_kernel134_x86_64_sse2.lo nb_kernel200_x86_64_sse2.lo nb_kernel201_x86_64_sse2.lo nb_kernel202_x86_64_sse2.lo nb_kernel203_x86_64_sse2.lo nb_kernel204_x86_64_sse2.lo nb_kernel210_x86_64_sse2.lo nb_kernel211_x86_64_sse2.lo nb_kernel212_x86_64_sse2.lo nb_kernel213_x86_64_sse2.lo nb_kernel214_x86_64_sse2.lo nb_kernel230_x86_64_sse2.lo nb_kernel231_x86_64_sse2.lo nb_kernel232_x86_64_sse2.lo nb_kernel233_x86_64_sse2.lo nb_kernel234_x86_64_sse2.lo nb_kernel300_x86_64_sse2.lo nb_kernel301_x86_64_sse2.lo nb_kernel302_x86_64_sse2.lo nb_kernel303_x86_64_sse2.lo nb_kernel304_x86_64_sse2.lo nb_kernel310_x86_64_sse2.lo nb_kernel311_x86_64_sse2.lo nb_kernel312_x86_64_sse2.lo nb_kernel313_x86_64_sse2.lo nb_kernel314_x86_64_sse2.lo nb_kernel330_x86_64_sse2.lo nb_kernel331_x86_64_sse2.lo nb_kernel332_x86_64_sse2.lo nb_kernel333_x86_64_sse2.lo nb_kernel334_x86_64_sse2.lo nb_kernel400_x86_64_sse2.lo nb_kernel410_x86_64_sse2.lo nb_kernel430_x86_64_sse2.lo nb_kernel_x86_64_sse2_test.lo nb_kernel_x86_64_sse2.lo -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath ar cru .libs/libnb_kernel_x86_64_sse2.a .libs/nb_kernel010_x86_64_sse2.o .libs/nb_kernel030_x86_64_sse2.o .libs/nb_kernel100_x86_64_sse2.o .libs/nb_kernel101_x86_64_sse2.o .libs/nb_kernel102_x86_64_sse2.o .libs/nb_kernel103_x86_64_sse2.o .libs/nb_kernel104_x86_64_sse2.o .libs/nb_kernel110_x86_64_sse2.o .libs/nb_kernel111_x86_64_sse2.o .libs/nb_kernel112_x86_64_sse2.o .libs/nb_kernel113_x86_64_sse2.o .libs/nb_kernel114_x86_64_sse2.o .libs/nb_kernel130_x86_64_sse2.o .libs/nb_kernel131_x86_64_sse2.o .libs/nb_kernel132_x86_64_sse2.o .libs/nb_kernel133_x86_64_sse2.o .libs/nb_kernel134_x86_64_sse2.o .libs/nb_kernel200_x86_64_sse2.o .libs/nb_kernel201_x86_64_sse2.o .libs/nb_kernel202_x86_64_sse2.o .libs/nb_kernel203_x86_64_sse2.o .libs/nb_kernel204_x86_64_sse2.o .libs/nb_kernel210_x86_64_sse2.o .libs/nb_kernel211_x86_64_sse2.o .libs/nb_kernel212_x86_64_sse2.o .libs/nb_kernel213_x86_64_sse2.o .libs/nb_kernel214_x86_64_sse2.o .libs/nb_kernel230_x86_64_sse2.o .libs/nb_kernel231_x86_64_sse2.o .libs/nb_kernel232_x86_64_sse2.o .libs/nb_kernel233_x86_64_sse2.o .libs/nb_kernel234_x86_64_sse2.o .libs/nb_kernel300_x86_64_sse2.o .libs/nb_kernel301_x86_64_sse2.o .libs/nb_kernel302_x86_64_sse2.o .libs/nb_kernel303_x86_64_sse2.o .libs/nb_kernel304_x86_64_sse2.o .libs/nb_kernel310_x86_64_sse2.o .libs/nb_kernel311_x86_64_sse2.o .libs/nb_kernel312_x86_64_sse2.o .libs/nb_kernel313_x86_64_sse2.o .libs/nb_kernel314_x86_64_sse2.o .libs/nb_kernel330_x86_64_sse2.o .libs/nb_kernel331_x86_64_sse2.o .libs/nb_kernel332_x86_64_sse2.o .libs/nb_kernel333_x86_64_sse2.o .libs/nb_kernel334_x86_64_sse2.o .libs/nb_kernel400_x86_64_sse2.o .libs/nb_kernel410_x86_64_sse2.o .libs/nb_kernel430_x86_64_sse2.o .libs/nb_kernel_x86_64_sse2_test.o .libs/nb_kernel_x86_64_sse2.o ranlib .libs/libnb_kernel_x86_64_sse2.a creating libnb_kernel_x86_64_sse2.la (cd .libs && rm -f libnb_kernel_x86_64_sse2.la && ln -s ../libnb_kernel_x86_64_sse2.la libnb_kernel_x86_64_sse2.la) make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' Making all in nb_kernel make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_common.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_common.c make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb.c make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_outerloop.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_outerloop.c make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_declarations.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_declarations.c make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_innerloop.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_innerloop.c make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_interactions.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_interactions.c make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_metacode.o ../../../../../src/gmxlib/nonbonded/nb_kernel/mknb_metacode.c make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' x86_64-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -o mknb mknb.o mknb_metacode.o mknb_common.o mknb_declarations.o mknb_outerloop.o mknb_innerloop.o mknb_interactions.o make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' rm -f kernel-stamp ./mknb -double -software_invsqrt -fortran >>> Gromacs nonbonded kernel generator (-h for help) >>> Generating double precision functions in Fortran77. >>> Using Gromacs software version of 1/sqrt(x). Progress: 1% Progress: 2% Progress: 4% Progress: 5% Progress: 7% Progress: 8% Progress: 10% Progress: 11% Progress: 13% Progress: 14% Progress: 16% Progress: 17% Progress: 19% Progress: 20% Progress: 22% Progress: 23% Progress: 25% Progress: 26% Progress: 28% Progress: 29% Progress: 31% Progress: 32% Progress: 34% Progress: 35% Progress: 37% Progress: 38% Progress: 40% Progress: 41% Progress: 43% Progress: 44% Progress: 46% Progress: 47% Progress: 49% Progress: 50% Progress: 52% Progress: 53% Progress: 55% Progress: 56% Progress: 58% Progress: 59% Progress: 61% Progress: 62% Progress: 64% Progress: 65% Progress: 67% Progress: 68% Progress: 70% Progress: 71% Progress: 73% Progress: 74% Progress: 76% Progress: 77% Progress: 79% Progress: 80% Progress: 82% Progress: 83% Progress: 85% Progress: 86% Progress: 88% Progress: 89% Progress: 91% Progress: 92% Progress: 94% Progress: 95% Progress: 97% Progress: 98% Progress: 100% make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make all-am make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel.lo ../../../../../src/gmxlib/nonbonded/nb_kernel/nb_kernel.c mpicc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel/nb_kernel.c -fPIC -DPIC -o .libs/nb_kernel.o make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel010_f.lo nb_kernel010_f.f mkdir .libs f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel010_f.f -fPIC -o .libs/nb_kernel010_f.o nb_kernel010_f.f:36:38: & charge, 1 Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:37:37: & facel, 1 Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:40:34: & Vc, 1 Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:169:38: & charge, 1 Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:185:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:172:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:181:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:170:37: & facel, 1 Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:168:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:165:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:183:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:182:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:180:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:171:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:186:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:184:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:178:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:173:34: & Vc, 1 Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:179:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel010_f.f:189:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel100_f.lo nb_kernel100_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel100_f.f -fPIC -o .libs/nb_kernel100_f.o nb_kernel100_f.f:125:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel100_f.f:272:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel100_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:204:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:191:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:200:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:187:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:184:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:202:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:201:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:199:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:190:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:205:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:203:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:194:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:197:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:193:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:195:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:198:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:196:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel100_f.f:208:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel020_f.lo nb_kernel020_f.f mkdir .libs mkdir: cannot create directory '.libs': File exists f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel020_f.f -fPIC -o .libs/nb_kernel020_f.o nb_kernel020_f.f:129:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel020_f.f:287:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel020_f.f:36:38: & charge, 1 Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:37:37: & facel, 1 Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:40:34: & Vc, 1 Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:198:38: & charge, 1 Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:214:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:201:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:210:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:199:37: & facel, 1 Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:197:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:194:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:212:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:211:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:209:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:200:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:215:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:213:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:207:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:202:34: & Vc, 1 Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:208:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel020_f.f:218:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel030_f.lo nb_kernel030_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel030_f.f -fPIC -o .libs/nb_kernel030_f.o nb_kernel030_f.f:132:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel030_f.f:146:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel030_f.f:310:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel030_f.f:324:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel030_f.f:36:38: & charge, 1 Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:37:37: & facel, 1 Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:40:34: & Vc, 1 Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:220:38: & charge, 1 Warning: Unused dummy argument 'charge' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:236:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:223:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:232:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:221:37: & facel, 1 Warning: Unused dummy argument 'facel' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:219:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:216:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:234:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:233:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:231:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:222:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:237:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:235:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:224:34: & Vc, 1 Warning: Unused dummy argument 'vc' at (1) [-Wunused-dummy-argument] nb_kernel030_f.f:240:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel101_f.lo nb_kernel101_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel101_f.f -fPIC -o .libs/nb_kernel101_f.o nb_kernel101_f.f:153:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel101_f.f:162:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel101_f.f:171:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel101_f.f:374:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel101_f.f:383:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel101_f.f:392:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel101_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:284:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:271:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:280:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:267:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:264:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:282:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:281:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:279:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:270:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:285:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:283:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:274:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:277:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:273:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:275:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:278:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:276:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel101_f.f:288:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel103_f.lo nb_kernel103_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel103_f.f -fPIC -o .libs/nb_kernel103_f.o nb_kernel103_f.f:153:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel103_f.f:162:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel103_f.f:171:29: fval = rsq41 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel103_f.f:374:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel103_f.f:383:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel103_f.f:392:29: fval = rsq41 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel103_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:284:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:271:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:280:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:267:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:264:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:282:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:281:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:279:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:270:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:285:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:283:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:274:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:277:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:273:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:275:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:278:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:276:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel103_f.f:288:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel110_f.lo nb_kernel110_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel110_f.f -fPIC -o .libs/nb_kernel110_f.o nb_kernel110_f.f:133:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel110_f.f:297:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel110_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:220:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:207:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:216:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:203:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:200:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:218:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:217:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:215:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:206:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:221:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:219:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:213:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:214:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel110_f.f:224:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel102_f.lo nb_kernel102_f.f mkdir .libs mkdir: cannot create directory '.libs': File exists f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel102_f.f -fPIC -o .libs/nb_kernel102_f.o nb_kernel102_f.f:193:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel102_f.f:202:29: fval = rsq12 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel102_f.f:211:29: fval = rsq13 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel102_f.f:220:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel102_f.f:229:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel102_f.f:238:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel102_f.f:247:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel102_f.f:256:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel102_f.f:265:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel102_f.f:592:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel102_f.f:601:29: fval = rsq12 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel102_f.f:610:29: fval = rsq13 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel102_f.f:619:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel102_f.f:628:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel102_f.f:637:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel102_f.f:646:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel102_f.f:655:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel102_f.f:664:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel102_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:462:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:449:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:458:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:445:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:442:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:460:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:459:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:457:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:448:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:463:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:461:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:452:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:455:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:451:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:453:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:456:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:454:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel102_f.f:466:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel111_f.lo nb_kernel111_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel111_f.f -fPIC -o .libs/nb_kernel111_f.o nb_kernel111_f.f:161:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel111_f.f:170:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel111_f.f:179:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel111_f.f:399:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel111_f.f:408:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel111_f.f:417:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel111_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:300:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:287:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:296:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:283:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:280:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:298:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:297:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:295:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:286:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:301:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:299:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:293:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:294:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel111_f.f:304:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel120_f.lo nb_kernel120_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel120_f.f -fPIC -o .libs/nb_kernel120_f.o nb_kernel120_f.f:133:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel120_f.f:299:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel120_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:222:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:209:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:218:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:205:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:202:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:220:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:219:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:217:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:208:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:223:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:221:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:215:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:216:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel120_f.f:226:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel113_f.lo nb_kernel113_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel113_f.f -fPIC -o .libs/nb_kernel113_f.o nb_kernel113_f.f:174:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel113_f.f:183:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel113_f.f:192:29: fval = rsq41 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel113_f.f:435:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel113_f.f:444:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel113_f.f:453:29: fval = rsq41 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel113_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:326:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:313:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:322:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:309:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:306:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:324:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:323:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:321:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:312:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:327:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:325:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:319:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:320:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel113_f.f:330:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel104_f.lo nb_kernel104_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel104_f.f -fPIC -o .libs/nb_kernel104_f.o nb_kernel104_f.f:193:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel104_f.f:202:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel104_f.f:211:29: fval = rsq24 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel104_f.f:220:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel104_f.f:229:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel104_f.f:238:29: fval = rsq34 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel104_f.f:247:29: fval = rsq42 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel104_f.f:256:29: fval = rsq43 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel104_f.f:265:29: fval = rsq44 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel104_f.f:592:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel104_f.f:601:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel104_f.f:610:29: fval = rsq24 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel104_f.f:619:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel104_f.f:628:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel104_f.f:637:29: fval = rsq34 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel104_f.f:646:29: fval = rsq42 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel104_f.f:655:29: fval = rsq43 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel104_f.f:664:29: fval = rsq44 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel104_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:462:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:449:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:458:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:445:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:442:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:460:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:459:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:457:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:448:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:463:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:461:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:452:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:455:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:451:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:453:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:456:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:454:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel104_f.f:466:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel112_f.lo nb_kernel112_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel112_f.f -fPIC -o .libs/nb_kernel112_f.o nb_kernel112_f.f:202:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel112_f.f:211:29: fval = rsq12 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel112_f.f:220:29: fval = rsq13 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel112_f.f:229:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel112_f.f:238:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel112_f.f:247:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel112_f.f:256:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel112_f.f:265:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel112_f.f:274:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel112_f.f:616:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel112_f.f:625:29: fval = rsq12 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel112_f.f:634:29: fval = rsq13 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel112_f.f:643:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel112_f.f:652:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel112_f.f:661:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel112_f.f:670:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel112_f.f:679:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel112_f.f:688:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel112_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:476:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:463:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:472:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:459:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:456:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:474:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:473:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:471:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:462:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:477:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:475:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:469:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:470:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel112_f.f:480:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel121_f.lo nb_kernel121_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel121_f.f -fPIC -o .libs/nb_kernel121_f.o nb_kernel121_f.f:161:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel121_f.f:170:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel121_f.f:179:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel121_f.f:401:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel121_f.f:410:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel121_f.f:419:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel121_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:302:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:289:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:298:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:285:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:282:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:300:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:299:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:297:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:288:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:303:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:301:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:295:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:296:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel121_f.f:306:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel114_f.lo nb_kernel114_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel114_f.f -fPIC -o .libs/nb_kernel114_f.o nb_kernel114_f.f:219:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel114_f.f:228:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel114_f.f:237:29: fval = rsq24 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel114_f.f:246:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel114_f.f:255:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel114_f.f:264:29: fval = rsq34 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel114_f.f:273:29: fval = rsq42 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel114_f.f:282:29: fval = rsq43 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel114_f.f:291:29: fval = rsq44 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel114_f.f:660:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel114_f.f:669:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel114_f.f:678:29: fval = rsq24 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel114_f.f:687:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel114_f.f:696:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel114_f.f:705:29: fval = rsq34 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel114_f.f:714:29: fval = rsq42 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel114_f.f:723:29: fval = rsq43 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel114_f.f:732:29: fval = rsq44 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel114_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:506:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:493:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:502:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:489:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:486:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:504:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:503:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:501:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:492:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:507:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:505:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:499:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:500:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel114_f.f:510:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel130_f.lo nb_kernel130_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel130_f.f -fPIC -o .libs/nb_kernel130_f.o nb_kernel130_f.f:137:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel130_f.f:155:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel130_f.f:325:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel130_f.f:342:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel130_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:247:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:234:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:243:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:230:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:227:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:245:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:244:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:242:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:233:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:248:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:246:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel130_f.f:251:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel123_f.lo nb_kernel123_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel123_f.f -fPIC -o .libs/nb_kernel123_f.o nb_kernel123_f.f:173:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel123_f.f:182:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel123_f.f:191:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel123_f.f:200:29: fval = rsq41 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel123_f.f:445:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel123_f.f:454:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel123_f.f:463:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel123_f.f:472:29: fval = rsq41 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel123_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:337:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:324:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:333:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:320:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:317:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:335:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:334:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:332:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:323:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:338:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:336:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:330:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:331:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel123_f.f:341:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel131_f.lo nb_kernel131_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel131_f.f -fPIC -o .libs/nb_kernel131_f.o nb_kernel131_f.f:165:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel131_f.f:174:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel131_f.f:183:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel131_f.f:202:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel131_f.f:427:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel131_f.f:436:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel131_f.f:445:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel131_f.f:463:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel131_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:327:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:314:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:323:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:310:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:307:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:325:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:324:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:322:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:313:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:328:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:326:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel131_f.f:331:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel122_f.lo nb_kernel122_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel122_f.f -fPIC -o .libs/nb_kernel122_f.o nb_kernel122_f.f:203:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel122_f.f:212:29: fval = rsq12 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel122_f.f:221:29: fval = rsq13 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel122_f.f:230:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel122_f.f:239:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel122_f.f:248:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel122_f.f:257:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel122_f.f:266:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel122_f.f:275:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel122_f.f:619:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel122_f.f:628:29: fval = rsq12 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel122_f.f:637:29: fval = rsq13 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel122_f.f:646:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel122_f.f:655:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel122_f.f:664:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel122_f.f:673:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel122_f.f:682:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel122_f.f:691:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel122_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:478:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:465:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:474:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:461:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:458:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:476:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:475:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:473:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:464:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:479:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:477:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:471:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:472:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel122_f.f:482:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel200_f.lo nb_kernel200_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel200_f.f -fPIC -o .libs/nb_kernel200_f.o nb_kernel200_f.f:126:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel200_f.f:275:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel200_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:206:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:202:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:189:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:186:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:204:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:203:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:201:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:207:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:205:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:196:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:199:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:195:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:197:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:200:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:198:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel200_f.f:210:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel124_f.lo nb_kernel124_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel124_f.f -fPIC -o .libs/nb_kernel124_f.o nb_kernel124_f.f:219:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel124_f.f:228:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel124_f.f:237:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel124_f.f:246:29: fval = rsq24 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel124_f.f:255:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel124_f.f:264:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel124_f.f:273:29: fval = rsq34 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel124_f.f:282:29: fval = rsq42 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel124_f.f:291:29: fval = rsq43 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel124_f.f:300:29: fval = rsq44 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel124_f.f:671:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel124_f.f:680:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel124_f.f:689:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel124_f.f:698:29: fval = rsq24 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel124_f.f:707:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel124_f.f:716:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel124_f.f:725:29: fval = rsq34 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel124_f.f:734:29: fval = rsq42 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel124_f.f:743:29: fval = rsq43 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel124_f.f:752:29: fval = rsq44 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel124_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:517:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:504:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:513:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:500:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:497:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:515:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:514:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:512:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:503:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:518:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:516:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:510:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:511:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel124_f.f:521:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel133_f.lo nb_kernel133_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel133_f.f -fPIC -o .libs/nb_kernel133_f.o nb_kernel133_f.f:177:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel133_f.f:186:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel133_f.f:195:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel133_f.f:204:29: fval = rsq41 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel133_f.f:218:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel133_f.f:469:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel133_f.f:478:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel133_f.f:487:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel133_f.f:496:29: fval = rsq41 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel133_f.f:510:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel133_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:360:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:347:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:356:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:343:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:340:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:358:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:357:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:355:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:346:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:361:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:359:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel133_f.f:364:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel201_f.lo nb_kernel201_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel201_f.f -fPIC -o .libs/nb_kernel201_f.o nb_kernel201_f.f:154:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel201_f.f:163:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel201_f.f:172:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel201_f.f:379:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel201_f.f:388:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel201_f.f:397:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel201_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:288:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:284:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:271:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:268:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:286:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:285:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:283:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:289:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:287:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:278:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:281:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:277:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:279:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:282:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:280:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel201_f.f:292:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel132_f.lo nb_kernel132_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel132_f.f -fPIC -o .libs/nb_kernel132_f.o nb_kernel132_f.f:206:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel132_f.f:215:29: fval = rsq12 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel132_f.f:224:29: fval = rsq13 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel132_f.f:233:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel132_f.f:242:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel132_f.f:251:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel132_f.f:260:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel132_f.f:269:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel132_f.f:278:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel132_f.f:293:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel132_f.f:644:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel132_f.f:653:29: fval = rsq12 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel132_f.f:662:29: fval = rsq13 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel132_f.f:671:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel132_f.f:680:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel132_f.f:689:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel132_f.f:698:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel132_f.f:707:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel132_f.f:716:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel132_f.f:730:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel132_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:503:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:490:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:499:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:486:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:483:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:501:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:500:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:498:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:489:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:504:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:502:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel132_f.f:507:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel203_f.lo nb_kernel203_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel203_f.f -fPIC -o .libs/nb_kernel203_f.o nb_kernel203_f.f:154:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel203_f.f:163:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel203_f.f:172:29: fval = rsq41 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel203_f.f:379:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel203_f.f:388:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel203_f.f:397:29: fval = rsq41 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel203_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:288:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:284:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:271:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:268:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:286:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:285:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:283:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:289:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:287:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:278:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:281:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:277:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:279:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:282:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:280:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel203_f.f:292:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel210_f.lo nb_kernel210_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel210_f.f -fPIC -o .libs/nb_kernel210_f.o nb_kernel210_f.f:134:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel210_f.f:301:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel210_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:223:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:219:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:206:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:203:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:221:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:220:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:218:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:224:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:222:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:216:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:217:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel210_f.f:227:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel134_f.lo nb_kernel134_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel134_f.f -fPIC -o .libs/nb_kernel134_f.o nb_kernel134_f.f:222:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel134_f.f:231:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel134_f.f:240:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel134_f.f:249:29: fval = rsq24 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel134_f.f:258:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel134_f.f:267:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel134_f.f:276:29: fval = rsq34 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel134_f.f:285:29: fval = rsq42 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel134_f.f:294:29: fval = rsq43 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel134_f.f:303:29: fval = rsq44 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel134_f.f:314:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel134_f.f:694:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel134_f.f:703:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel134_f.f:712:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel134_f.f:721:29: fval = rsq24 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel134_f.f:730:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel134_f.f:739:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel134_f.f:748:29: fval = rsq34 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel134_f.f:757:29: fval = rsq42 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel134_f.f:766:29: fval = rsq43 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel134_f.f:775:29: fval = rsq44 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel134_f.f:786:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel134_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:540:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:527:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:536:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:523:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:520:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:538:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:537:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:535:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:526:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:541:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:539:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel134_f.f:544:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel202_f.lo nb_kernel202_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel202_f.f -fPIC -o .libs/nb_kernel202_f.o nb_kernel202_f.f:194:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel202_f.f:203:29: fval = rsq12 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel202_f.f:212:29: fval = rsq13 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel202_f.f:221:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel202_f.f:230:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel202_f.f:239:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel202_f.f:248:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel202_f.f:257:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel202_f.f:266:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel202_f.f:603:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel202_f.f:612:29: fval = rsq12 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel202_f.f:621:29: fval = rsq13 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel202_f.f:630:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel202_f.f:639:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel202_f.f:648:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel202_f.f:657:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel202_f.f:666:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel202_f.f:675:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel202_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:472:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:468:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:455:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:452:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:470:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:469:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:467:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:473:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:471:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:462:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:465:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:461:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:463:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:466:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:464:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel202_f.f:476:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel211_f.lo nb_kernel211_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel211_f.f -fPIC -o .libs/nb_kernel211_f.o nb_kernel211_f.f:162:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel211_f.f:171:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel211_f.f:180:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel211_f.f:405:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel211_f.f:414:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel211_f.f:423:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel211_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:305:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:301:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:288:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:285:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:303:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:302:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:300:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:306:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:304:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:298:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:299:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel211_f.f:309:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel213_f.lo nb_kernel213_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel213_f.f -fPIC -o .libs/nb_kernel213_f.o nb_kernel213_f.f:175:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel213_f.f:184:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel213_f.f:193:29: fval = rsq41 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel213_f.f:440:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel213_f.f:449:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel213_f.f:458:29: fval = rsq41 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel213_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:330:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:326:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:313:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:310:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:328:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:327:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:325:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:331:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:329:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:323:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:324:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel213_f.f:334:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel204_f.lo nb_kernel204_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel204_f.f -fPIC -o .libs/nb_kernel204_f.o nb_kernel204_f.f:194:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel204_f.f:203:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel204_f.f:212:29: fval = rsq24 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel204_f.f:221:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel204_f.f:230:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel204_f.f:239:29: fval = rsq34 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel204_f.f:248:29: fval = rsq42 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel204_f.f:257:29: fval = rsq43 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel204_f.f:266:29: fval = rsq44 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel204_f.f:603:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel204_f.f:612:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel204_f.f:621:29: fval = rsq24 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel204_f.f:630:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel204_f.f:639:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel204_f.f:648:29: fval = rsq34 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel204_f.f:657:29: fval = rsq42 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel204_f.f:666:29: fval = rsq43 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel204_f.f:675:29: fval = rsq44 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel204_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:472:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:468:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:455:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:452:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:470:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:469:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:467:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:473:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:471:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:462:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:465:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:461:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:463:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:466:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:464:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel204_f.f:476:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel220_f.lo nb_kernel220_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel220_f.f -fPIC -o .libs/nb_kernel220_f.o nb_kernel220_f.f:134:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel220_f.f:303:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel220_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:225:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:221:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:208:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:205:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:223:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:222:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:220:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:226:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:224:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:218:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:219:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel220_f.f:229:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel212_f.lo nb_kernel212_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel212_f.f -fPIC -o .libs/nb_kernel212_f.o nb_kernel212_f.f:203:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel212_f.f:212:29: fval = rsq12 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel212_f.f:221:29: fval = rsq13 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel212_f.f:230:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel212_f.f:239:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel212_f.f:248:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel212_f.f:257:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel212_f.f:266:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel212_f.f:275:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel212_f.f:628:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel212_f.f:637:29: fval = rsq12 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel212_f.f:646:29: fval = rsq13 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel212_f.f:655:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel212_f.f:664:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel212_f.f:673:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel212_f.f:682:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel212_f.f:691:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel212_f.f:700:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel212_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:487:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:483:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:470:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:467:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:485:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:484:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:482:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:488:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:486:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:480:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:481:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel212_f.f:491:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel221_f.lo nb_kernel221_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel221_f.f -fPIC -o .libs/nb_kernel221_f.o nb_kernel221_f.f:162:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel221_f.f:171:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel221_f.f:180:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel221_f.f:407:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel221_f.f:416:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel221_f.f:425:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel221_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:307:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:303:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:290:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:287:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:305:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:304:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:302:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:308:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:306:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:300:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:301:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel221_f.f:311:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel214_f.lo nb_kernel214_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel214_f.f -fPIC -o .libs/nb_kernel214_f.o nb_kernel214_f.f:220:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel214_f.f:229:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel214_f.f:238:29: fval = rsq24 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel214_f.f:247:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel214_f.f:256:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel214_f.f:265:29: fval = rsq34 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel214_f.f:274:29: fval = rsq42 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel214_f.f:283:29: fval = rsq43 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel214_f.f:292:29: fval = rsq44 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel214_f.f:671:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel214_f.f:680:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel214_f.f:689:29: fval = rsq24 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel214_f.f:698:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel214_f.f:707:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel214_f.f:716:29: fval = rsq34 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel214_f.f:725:29: fval = rsq42 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel214_f.f:734:29: fval = rsq43 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel214_f.f:743:29: fval = rsq44 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel214_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:516:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:512:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:499:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:496:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:514:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:513:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:511:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:517:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:515:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:509:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:510:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel214_f.f:520:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel223_f.lo nb_kernel223_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel223_f.f -fPIC -o .libs/nb_kernel223_f.o nb_kernel223_f.f:174:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel223_f.f:183:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel223_f.f:192:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel223_f.f:201:29: fval = rsq41 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel223_f.f:450:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel223_f.f:459:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel223_f.f:468:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel223_f.f:477:29: fval = rsq41 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel223_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:341:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:337:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:324:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:321:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:339:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:338:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:336:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:342:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:340:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:334:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:335:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel223_f.f:345:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel230_f.lo nb_kernel230_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel230_f.f -fPIC -o .libs/nb_kernel230_f.o nb_kernel230_f.f:138:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel230_f.f:157:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel230_f.f:328:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel230_f.f:346:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel230_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:249:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:245:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:232:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:229:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:247:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:246:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:244:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:250:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:248:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel230_f.f:253:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel222_f.lo nb_kernel222_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel222_f.f -fPIC -o .libs/nb_kernel222_f.o nb_kernel222_f.f:204:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel222_f.f:213:29: fval = rsq12 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel222_f.f:222:29: fval = rsq13 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel222_f.f:231:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel222_f.f:240:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel222_f.f:249:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel222_f.f:258:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel222_f.f:267:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel222_f.f:276:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel222_f.f:631:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel222_f.f:640:29: fval = rsq12 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel222_f.f:649:29: fval = rsq13 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel222_f.f:658:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel222_f.f:667:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel222_f.f:676:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel222_f.f:685:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel222_f.f:694:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel222_f.f:703:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel222_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:489:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:485:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:472:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:469:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:487:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:486:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:484:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:490:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:488:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:482:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:483:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel222_f.f:493:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel231_f.lo nb_kernel231_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel231_f.f -fPIC -o .libs/nb_kernel231_f.o nb_kernel231_f.f:166:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel231_f.f:175:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel231_f.f:184:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel231_f.f:204:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel231_f.f:432:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel231_f.f:441:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel231_f.f:450:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel231_f.f:469:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel231_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:331:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:327:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:314:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:311:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:329:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:328:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:326:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:332:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:330:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel231_f.f:335:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel300_f.lo nb_kernel300_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel300_f.f -fPIC -o .libs/nb_kernel300_f.o nb_kernel300_f.f:129:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel300_f.f:141:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel300_f.f:292:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel300_f.f:304:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel300_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:221:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:208:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:217:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:204:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:201:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:219:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:218:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:216:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:207:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:222:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:220:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:211:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:210:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:212:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:213:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel300_f.f:225:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel233_f.lo nb_kernel233_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel233_f.f -fPIC -o .libs/nb_kernel233_f.o nb_kernel233_f.f:178:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel233_f.f:187:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel233_f.f:196:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel233_f.f:205:29: fval = rsq41 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel233_f.f:219:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel233_f.f:474:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel233_f.f:483:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel233_f.f:492:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel233_f.f:501:29: fval = rsq41 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel233_f.f:515:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel233_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:364:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:360:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:347:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:344:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:362:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:361:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:359:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:365:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:363:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel233_f.f:368:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel224_f.lo nb_kernel224_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel224_f.f -fPIC -o .libs/nb_kernel224_f.o nb_kernel224_f.f:220:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel224_f.f:229:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel224_f.f:238:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel224_f.f:247:29: fval = rsq24 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel224_f.f:256:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel224_f.f:265:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel224_f.f:274:29: fval = rsq34 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel224_f.f:283:29: fval = rsq42 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel224_f.f:292:29: fval = rsq43 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel224_f.f:301:29: fval = rsq44 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel224_f.f:682:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel224_f.f:691:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel224_f.f:700:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel224_f.f:709:29: fval = rsq24 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel224_f.f:718:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel224_f.f:727:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel224_f.f:736:29: fval = rsq34 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel224_f.f:745:29: fval = rsq42 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel224_f.f:754:29: fval = rsq43 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel224_f.f:763:29: fval = rsq44 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel224_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:527:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:523:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:510:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:507:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:525:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:524:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:522:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:528:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:526:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:520:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:521:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel224_f.f:531:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel301_f.lo nb_kernel301_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel301_f.f -fPIC -o .libs/nb_kernel301_f.o nb_kernel301_f.f:157:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel301_f.f:166:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel301_f.f:175:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel301_f.f:188:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel301_f.f:215:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel301_f.f:241:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel301_f.f:420:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel301_f.f:429:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel301_f.f:438:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel301_f.f:451:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel301_f.f:466:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel301_f.f:480:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel301_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:327:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:314:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:323:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:310:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:307:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:325:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:324:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:322:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:313:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:328:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:326:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:317:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:316:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:318:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:319:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel301_f.f:331:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel232_f.lo nb_kernel232_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel232_f.f -fPIC -o .libs/nb_kernel232_f.o nb_kernel232_f.f:207:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel232_f.f:216:29: fval = rsq12 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel232_f.f:225:29: fval = rsq13 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel232_f.f:234:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel232_f.f:243:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel232_f.f:252:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel232_f.f:261:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel232_f.f:270:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel232_f.f:279:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel232_f.f:295:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel232_f.f:655:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel232_f.f:664:29: fval = rsq12 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel232_f.f:673:29: fval = rsq13 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel232_f.f:682:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel232_f.f:691:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel232_f.f:700:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel232_f.f:709:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel232_f.f:718:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel232_f.f:727:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel232_f.f:742:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel232_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:513:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:509:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:496:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:493:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:511:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:510:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:508:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:514:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:512:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel232_f.f:517:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel303_f.lo nb_kernel303_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel303_f.f -fPIC -o .libs/nb_kernel303_f.o nb_kernel303_f.f:157:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel303_f.f:166:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel303_f.f:175:29: fval = rsq41 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel303_f.f:188:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel303_f.f:214:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel303_f.f:241:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel303_f.f:420:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel303_f.f:429:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel303_f.f:438:29: fval = rsq41 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel303_f.f:451:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel303_f.f:465:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel303_f.f:480:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel303_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:327:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:314:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:323:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:310:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:307:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:325:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:324:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:322:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:313:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:328:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:326:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:317:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:316:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:318:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:319:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel303_f.f:331:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel310_f.lo nb_kernel310_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel310_f.f -fPIC -o .libs/nb_kernel310_f.o nb_kernel310_f.f:138:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel310_f.f:154:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel310_f.f:320:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel310_f.f:336:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel310_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:240:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:227:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:236:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:223:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:220:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:238:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:237:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:235:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:226:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:241:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:239:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel310_f.f:244:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel234_f.lo nb_kernel234_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel234_f.f -fPIC -o .libs/nb_kernel234_f.o nb_kernel234_f.f:223:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel234_f.f:232:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel234_f.f:241:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel234_f.f:250:29: fval = rsq24 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel234_f.f:259:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel234_f.f:268:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel234_f.f:277:29: fval = rsq34 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel234_f.f:286:29: fval = rsq42 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel234_f.f:295:29: fval = rsq43 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel234_f.f:304:29: fval = rsq44 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel234_f.f:315:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel234_f.f:705:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel234_f.f:714:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel234_f.f:723:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel234_f.f:732:29: fval = rsq24 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel234_f.f:741:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel234_f.f:750:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel234_f.f:759:29: fval = rsq34 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel234_f.f:768:29: fval = rsq42 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel234_f.f:777:29: fval = rsq43 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel234_f.f:786:29: fval = rsq44 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel234_f.f:797:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel234_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:550:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:546:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:533:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:530:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:548:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:547:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:545:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:551:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:549:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel234_f.f:554:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel311_f.lo nb_kernel311_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel311_f.f -fPIC -o .libs/nb_kernel311_f.o nb_kernel311_f.f:166:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel311_f.f:175:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel311_f.f:184:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel311_f.f:201:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel311_f.f:233:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel311_f.f:259:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel311_f.f:448:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel311_f.f:457:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel311_f.f:466:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel311_f.f:483:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel311_f.f:502:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel311_f.f:516:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel311_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:346:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:333:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:342:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:329:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:326:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:344:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:343:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:341:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:332:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:347:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:345:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel311_f.f:350:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel302_f.lo nb_kernel302_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel302_f.f -fPIC -o .libs/nb_kernel302_f.o nb_kernel302_f.f:197:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel302_f.f:206:29: fval = rsq12 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel302_f.f:215:29: fval = rsq13 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel302_f.f:224:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel302_f.f:233:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel302_f.f:242:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel302_f.f:251:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel302_f.f:260:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel302_f.f:269:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel302_f.f:281:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:308:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:335:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:362:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:389:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:416:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:443:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:470:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:497:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:716:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel302_f.f:725:29: fval = rsq12 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel302_f.f:734:29: fval = rsq13 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel302_f.f:743:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel302_f.f:752:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel302_f.f:761:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel302_f.f:770:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel302_f.f:779:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel302_f.f:788:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel302_f.f:800:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:815:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:830:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:845:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:860:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:875:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:890:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:905:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:920:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel302_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:583:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:570:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:579:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:566:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:563:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:581:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:580:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:578:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:569:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:584:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:582:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:573:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:572:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:574:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:575:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel302_f.f:587:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel320_f.lo nb_kernel320_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel320_f.f -fPIC -o .libs/nb_kernel320_f.o nb_kernel320_f.f:138:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel320_f.f:155:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel320_f.f:322:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel320_f.f:339:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel320_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:242:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:229:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:238:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:225:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:222:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:240:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:239:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:237:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:228:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:243:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:241:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel320_f.f:246:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel313_f.lo nb_kernel313_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel313_f.f -fPIC -o .libs/nb_kernel313_f.o nb_kernel313_f.f:179:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel313_f.f:188:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel313_f.f:197:29: fval = rsq41 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel313_f.f:227:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel313_f.f:253:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel313_f.f:280:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel313_f.f:482:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel313_f.f:491:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel313_f.f:500:29: fval = rsq41 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel313_f.f:520:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel313_f.f:534:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel313_f.f:549:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel313_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:370:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:357:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:366:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:353:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:350:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:368:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:367:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:365:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:356:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:371:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:369:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel313_f.f:374:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel304_f.lo nb_kernel304_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel304_f.f -fPIC -o .libs/nb_kernel304_f.o nb_kernel304_f.f:197:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel304_f.f:206:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel304_f.f:215:29: fval = rsq24 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel304_f.f:224:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel304_f.f:233:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel304_f.f:242:29: fval = rsq34 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel304_f.f:251:29: fval = rsq42 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel304_f.f:260:29: fval = rsq43 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel304_f.f:269:29: fval = rsq44 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel304_f.f:281:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:308:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:335:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:362:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:389:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:416:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:443:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:470:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:497:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:716:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel304_f.f:725:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel304_f.f:734:29: fval = rsq24 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel304_f.f:743:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel304_f.f:752:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel304_f.f:761:29: fval = rsq34 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel304_f.f:770:29: fval = rsq42 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel304_f.f:779:29: fval = rsq43 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel304_f.f:788:29: fval = rsq44 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel304_f.f:800:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:815:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:830:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:845:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:860:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:875:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:890:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:905:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:920:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel304_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:583:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:570:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:579:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:566:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:563:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:581:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:580:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:578:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:569:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:584:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:582:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:573:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:572:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:574:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:575:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel304_f.f:587:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel321_f.lo nb_kernel321_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel321_f.f -fPIC -o .libs/nb_kernel321_f.o nb_kernel321_f.f:166:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel321_f.f:175:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel321_f.f:184:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel321_f.f:202:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel321_f.f:235:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel321_f.f:261:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel321_f.f:450:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel321_f.f:459:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel321_f.f:468:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel321_f.f:486:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel321_f.f:506:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel321_f.f:520:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel321_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:348:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:335:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:344:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:331:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:328:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:346:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:345:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:343:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:334:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:349:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:347:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel321_f.f:352:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel312_f.lo nb_kernel312_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel312_f.f -fPIC -o .libs/nb_kernel312_f.o nb_kernel312_f.f:207:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel312_f.f:216:29: fval = rsq12 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel312_f.f:225:29: fval = rsq13 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel312_f.f:234:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel312_f.f:243:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel312_f.f:252:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel312_f.f:261:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel312_f.f:270:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel312_f.f:279:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel312_f.f:292:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:324:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:351:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:378:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:405:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:432:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:459:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:486:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:513:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:743:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel312_f.f:752:29: fval = rsq12 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel312_f.f:761:29: fval = rsq13 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel312_f.f:770:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel312_f.f:779:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel312_f.f:788:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel312_f.f:797:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel312_f.f:806:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel312_f.f:815:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel312_f.f:828:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:847:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:862:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:877:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:892:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:907:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:922:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:937:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:952:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel312_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:600:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:587:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:596:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:583:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:580:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:598:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:597:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:595:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:586:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:601:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:599:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel312_f.f:604:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel330_f.lo nb_kernel330_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel330_f.f -fPIC -o .libs/nb_kernel330_f.o nb_kernel330_f.f:137:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel330_f.f:152:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel330_f.f:332:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel330_f.f:347:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel330_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:254:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:241:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:250:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:237:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:234:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:252:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:251:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:249:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:240:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:255:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:253:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel330_f.f:258:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel323_f.lo nb_kernel323_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel323_f.f -fPIC -o .libs/nb_kernel323_f.o nb_kernel323_f.f:178:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel323_f.f:187:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel323_f.f:196:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel323_f.f:205:29: fval = rsq41 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel323_f.f:238:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel323_f.f:264:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel323_f.f:291:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel323_f.f:492:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel323_f.f:501:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel323_f.f:510:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel323_f.f:519:29: fval = rsq41 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel323_f.f:542:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel323_f.f:556:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel323_f.f:571:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel323_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:381:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:368:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:377:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:364:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:361:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:379:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:378:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:376:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:367:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:382:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:380:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel323_f.f:385:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel314_f.lo nb_kernel314_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel314_f.f -fPIC -o .libs/nb_kernel314_f.o nb_kernel314_f.f:224:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel314_f.f:233:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel314_f.f:242:29: fval = rsq24 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel314_f.f:251:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel314_f.f:260:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel314_f.f:269:29: fval = rsq34 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel314_f.f:278:29: fval = rsq42 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel314_f.f:287:29: fval = rsq43 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel314_f.f:296:29: fval = rsq44 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel314_f.f:322:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:349:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:376:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:403:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:430:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:457:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:484:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:511:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:538:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:785:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel314_f.f:794:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel314_f.f:803:29: fval = rsq24 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel314_f.f:812:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel314_f.f:821:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel314_f.f:830:29: fval = rsq34 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel314_f.f:839:29: fval = rsq42 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel314_f.f:848:29: fval = rsq43 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel314_f.f:857:29: fval = rsq44 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel314_f.f:873:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:888:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:903:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:918:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:933:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:948:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:963:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:978:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:993:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel314_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:628:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:615:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:624:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:611:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:608:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:626:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:625:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:623:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:614:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:629:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:627:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel314_f.f:632:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel331_f.lo nb_kernel331_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel331_f.f -fPIC -o .libs/nb_kernel331_f.o nb_kernel331_f.f:165:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel331_f.f:174:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel331_f.f:183:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel331_f.f:199:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel331_f.f:247:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel331_f.f:273:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel331_f.f:460:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel331_f.f:469:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel331_f.f:478:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel331_f.f:494:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel331_f.f:526:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel331_f.f:540:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel331_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:360:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:347:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:356:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:343:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:340:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:358:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:357:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:355:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:346:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:361:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:359:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel331_f.f:364:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel322_f.lo nb_kernel322_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel322_f.f -fPIC -o .libs/nb_kernel322_f.o nb_kernel322_f.f:208:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel322_f.f:217:29: fval = rsq12 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel322_f.f:226:29: fval = rsq13 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel322_f.f:235:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel322_f.f:244:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel322_f.f:253:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel322_f.f:262:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel322_f.f:271:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel322_f.f:280:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel322_f.f:293:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:326:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:353:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:380:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:407:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:434:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:461:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:488:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:515:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:746:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel322_f.f:755:29: fval = rsq12 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel322_f.f:764:29: fval = rsq13 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel322_f.f:773:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel322_f.f:782:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel322_f.f:791:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel322_f.f:800:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel322_f.f:809:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel322_f.f:818:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel322_f.f:831:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:851:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:866:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:881:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:896:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:911:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:926:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:941:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:956:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel322_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:602:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:589:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:598:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:585:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:582:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:600:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:599:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:597:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:588:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:603:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:601:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel322_f.f:606:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel400_f.lo nb_kernel400_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel400_f.f -fPIC -o .libs/nb_kernel400_f.o nb_kernel400_f.f:133:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel400_f.f:149:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel400_f.f:306:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel400_f.f:321:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel400_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:42:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:41:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:43:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:44:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:233:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:220:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:229:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:216:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:213:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:219:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:234:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:232:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:223:37: & ntype, 1 Warning: Unused dummy argument 'ntype' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:226:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:222:36: & type, 1 Warning: Unused dummy argument 'type' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:224:40: & vdwparam, 1 Warning: Unused dummy argument 'vdwparam' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:227:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:225:36: & Vvdw, 1 Warning: Unused dummy argument 'vvdw' at (1) [-Wunused-dummy-argument] nb_kernel400_f.f:237:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel333_f.lo nb_kernel333_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel333_f.f -fPIC -o .libs/nb_kernel333_f.o nb_kernel333_f.f:177:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel333_f.f:186:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel333_f.f:195:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel333_f.f:204:29: fval = rsq41 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel333_f.f:218:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel333_f.f:257:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel333_f.f:283:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel333_f.f:310:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel333_f.f:509:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel333_f.f:518:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel333_f.f:527:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel333_f.f:536:29: fval = rsq41 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel333_f.f:550:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel333_f.f:575:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel333_f.f:589:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel333_f.f:604:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel333_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:400:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:387:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:396:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:383:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:380:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:398:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:397:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:395:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:386:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:401:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:399:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel333_f.f:404:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel410_f.lo nb_kernel410_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel410_f.f -fPIC -o .libs/nb_kernel410_f.o nb_kernel410_f.f:142:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel410_f.f:162:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel410_f.f:334:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel410_f.f:353:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel410_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:252:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:239:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:248:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:235:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:232:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:238:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:253:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:251:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:245:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:246:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel410_f.f:256:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel324_f.lo nb_kernel324_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel324_f.f -fPIC -o .libs/nb_kernel324_f.o nb_kernel324_f.f:224:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel324_f.f:233:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel324_f.f:242:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel324_f.f:251:29: fval = rsq24 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel324_f.f:260:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel324_f.f:269:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel324_f.f:278:29: fval = rsq34 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel324_f.f:287:29: fval = rsq42 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel324_f.f:296:29: fval = rsq43 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel324_f.f:305:29: fval = rsq44 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel324_f.f:333:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:360:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:387:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:414:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:441:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:468:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:495:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:522:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:549:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:796:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel324_f.f:805:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel324_f.f:814:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel324_f.f:823:29: fval = rsq24 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel324_f.f:832:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel324_f.f:841:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel324_f.f:850:29: fval = rsq34 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel324_f.f:859:29: fval = rsq42 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel324_f.f:868:29: fval = rsq43 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel324_f.f:877:29: fval = rsq44 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel324_f.f:895:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:910:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:925:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:940:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:955:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:970:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:985:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:1000:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:1015:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel324_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:639:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:626:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:635:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:622:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:619:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:637:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:636:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:634:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:625:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:640:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:638:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel324_f.f:643:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_kernel_f77sync.lo ../../../../../src/gmxlib/nonbonded/nb_kernel/nb_kernel_f77sync.c mpicc -DHAVE_CONFIG_H -I. -I../../../../../src/gmxlib/nonbonded/nb_kernel -I../../../../src -I../../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../../src/gmxlib/nonbonded/nb_kernel/nb_kernel_f77sync.c -fPIC -DPIC -o .libs/nb_kernel_f77sync.o make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel420_f.lo nb_kernel420_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel420_f.f -fPIC -o .libs/nb_kernel420_f.o nb_kernel420_f.f:142:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel420_f.f:163:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel420_f.f:336:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel420_f.f:356:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel420_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:45:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:46:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:254:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:241:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:250:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:237:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:234:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:240:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:255:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:253:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:247:40: & tabscale, 1 Warning: Unused dummy argument 'tabscale' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:248:37: & VFtab, 1 Warning: Unused dummy argument 'vftab' at (1) [-Wunused-dummy-argument] nb_kernel420_f.f:258:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel332_f.lo nb_kernel332_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel332_f.f -fPIC -o .libs/nb_kernel332_f.o nb_kernel332_f.f:206:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel332_f.f:215:29: fval = rsq12 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel332_f.f:224:29: fval = rsq13 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel332_f.f:233:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel332_f.f:242:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel332_f.f:251:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel332_f.f:260:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel332_f.f:269:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel332_f.f:278:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel332_f.f:290:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:338:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:365:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:392:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:419:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:446:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:473:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:500:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:527:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:755:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel332_f.f:764:29: fval = rsq12 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel332_f.f:773:29: fval = rsq13 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel332_f.f:782:29: fval = rsq21 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel332_f.f:791:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel332_f.f:800:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel332_f.f:809:29: fval = rsq31 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel332_f.f:818:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel332_f.f:827:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel332_f.f:839:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:871:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:886:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:901:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:916:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:931:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:946:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:961:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:976:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel332_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:614:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:601:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:610:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:597:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:594:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:612:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:611:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:609:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:600:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:615:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:613:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel332_f.f:618:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel430_f.lo nb_kernel430_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel430_f.f -fPIC -o .libs/nb_kernel430_f.o nb_kernel430_f.f:141:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel430_f.f:160:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel430_f.f:179:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel430_f.f:351:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel430_f.f:369:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel430_f.f:383:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel430_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel430_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel430_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel430_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel430_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel430_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel430_f.f:271:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel430_f.f:258:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel430_f.f:267:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel430_f.f:254:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel430_f.f:251:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel430_f.f:257:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel430_f.f:272:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel430_f.f:270:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel430_f.f:275:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=F77 --mode=compile f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c -o nb_kernel334_f.lo nb_kernel334_f.f f77 -pipe -frecord-gcc-switches -Wall -g -O2 -c nb_kernel334_f.f -fPIC -o .libs/nb_kernel334_f.o nb_kernel334_f.f:222:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel334_f.f:231:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel334_f.f:240:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel334_f.f:249:29: fval = rsq24 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel334_f.f:258:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel334_f.f:267:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel334_f.f:276:29: fval = rsq34 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel334_f.f:285:29: fval = rsq42 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel334_f.f:294:29: fval = rsq43 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel334_f.f:303:29: fval = rsq44 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel334_f.f:314:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:352:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:379:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:406:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:433:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:460:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:487:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:514:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:541:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:568:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:812:29: fval = rsq11 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel334_f.f:821:29: fval = rsq22 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel334_f.f:830:29: fval = rsq23 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel334_f.f:839:29: fval = rsq24 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel334_f.f:848:29: fval = rsq32 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel334_f.f:857:29: fval = rsq33 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel334_f.f:866:29: fval = rsq34 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel334_f.f:875:29: fval = rsq42 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel334_f.f:884:29: fval = rsq43 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel334_f.f:893:29: fval = rsq44 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] nb_kernel334_f.f:904:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:928:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:943:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:958:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:973:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:988:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:1003:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:1018:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:1033:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:1048:29: n0 = rt 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] nb_kernel334_f.f:52:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:39:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:48:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:50:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:49:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:47:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:38:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:53:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:51:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:56:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:658:37: & count, 1 Warning: Unused dummy argument 'count' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:645:35: & crf, 1 Warning: Unused dummy argument 'crf' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:654:36: & dvda, 1 Warning: Unused dummy argument 'dvda' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:641:39: & faction, 1 Warning: Unused dummy argument 'faction' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:638:38: & fshift, 1 Warning: Unused dummy argument 'fshift' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:656:37: & GBtab, 1 Warning: Unused dummy argument 'gbtab' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:655:42: & gbtabscale, 1 Warning: Unused dummy argument 'gbtabscale' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:653:40: & invsqrta, 1 Warning: Unused dummy argument 'invsqrta' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:644:35: & krf, 1 Warning: Unused dummy argument 'krf' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:659:35: & mtx, 1 Warning: Unused dummy argument 'mtx' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:657:40: & nthreads, 1 Warning: Unused dummy argument 'nthreads' at (1) [-Wunused-dummy-argument] nb_kernel334_f.f:662:36: & work) 1 Warning: Unused dummy argument 'work' at (1) [-Wunused-dummy-argument] make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' /bin/sh ../../../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o libnb_kernel.la nb_kernel.lo nb_kernel010_f.lo nb_kernel020_f.lo nb_kernel030_f.lo nb_kernel100_f.lo nb_kernel101_f.lo nb_kernel102_f.lo nb_kernel103_f.lo nb_kernel104_f.lo nb_kernel110_f.lo nb_kernel111_f.lo nb_kernel112_f.lo nb_kernel113_f.lo nb_kernel114_f.lo nb_kernel120_f.lo nb_kernel121_f.lo nb_kernel122_f.lo nb_kernel123_f.lo nb_kernel124_f.lo nb_kernel130_f.lo nb_kernel131_f.lo nb_kernel132_f.lo nb_kernel133_f.lo nb_kernel134_f.lo nb_kernel200_f.lo nb_kernel201_f.lo nb_kernel202_f.lo nb_kernel203_f.lo nb_kernel204_f.lo nb_kernel210_f.lo nb_kernel211_f.lo nb_kernel212_f.lo nb_kernel213_f.lo nb_kernel214_f.lo nb_kernel220_f.lo nb_kernel221_f.lo nb_kernel222_f.lo nb_kernel223_f.lo nb_kernel224_f.lo nb_kernel230_f.lo nb_kernel231_f.lo nb_kernel232_f.lo nb_kernel233_f.lo nb_kernel234_f.lo nb_kernel300_f.lo nb_kernel301_f.lo nb_kernel302_f.lo nb_kernel303_f.lo nb_kernel304_f.lo nb_kernel310_f.lo nb_kernel311_f.lo nb_kernel312_f.lo nb_kernel313_f.lo nb_kernel314_f.lo nb_kernel320_f.lo nb_kernel321_f.lo nb_kernel322_f.lo nb_kernel323_f.lo nb_kernel324_f.lo nb_kernel330_f.lo nb_kernel331_f.lo nb_kernel332_f.lo nb_kernel333_f.lo nb_kernel334_f.lo nb_kernel400_f.lo nb_kernel410_f.lo nb_kernel420_f.lo nb_kernel430_f.lo nb_kernel_f77sync.lo -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath ar cru .libs/libnb_kernel.a .libs/nb_kernel.o .libs/nb_kernel010_f.o .libs/nb_kernel020_f.o .libs/nb_kernel030_f.o .libs/nb_kernel100_f.o .libs/nb_kernel101_f.o .libs/nb_kernel102_f.o .libs/nb_kernel103_f.o .libs/nb_kernel104_f.o .libs/nb_kernel110_f.o .libs/nb_kernel111_f.o .libs/nb_kernel112_f.o .libs/nb_kernel113_f.o .libs/nb_kernel114_f.o .libs/nb_kernel120_f.o .libs/nb_kernel121_f.o .libs/nb_kernel122_f.o .libs/nb_kernel123_f.o .libs/nb_kernel124_f.o .libs/nb_kernel130_f.o .libs/nb_kernel131_f.o .libs/nb_kernel132_f.o .libs/nb_kernel133_f.o .libs/nb_kernel134_f.o .libs/nb_kernel200_f.o .libs/nb_kernel201_f.o .libs/nb_kernel202_f.o .libs/nb_kernel203_f.o .libs/nb_kernel204_f.o .libs/nb_kernel210_f.o .libs/nb_kernel211_f.o .libs/nb_kernel212_f.o .libs/nb_kernel213_f.o .libs/nb_kernel214_f.o .libs/nb_kernel220_f.o .libs/nb_kernel221_f.o .libs/nb_kernel222_f.o .libs/nb_kernel223_f.o .libs/nb_kernel224_f.o .libs/nb_kernel230_f.o .libs/nb_kernel231_f.o .libs/nb_kernel232_f.o .libs/nb_kernel233_f.o .libs/nb_kernel234_f.o .libs/nb_kernel300_f.o .libs/nb_kernel301_f.o .libs/nb_kernel302_f.o .libs/nb_kernel303_f.o .libs/nb_kernel304_f.o .libs/nb_kernel310_f.o .libs/nb_kernel311_f.o .libs/nb_kernel312_f.o .libs/nb_kernel313_f.o .libs/nb_kernel314_f.o .libs/nb_kernel320_f.o .libs/nb_kernel321_f.o .libs/nb_kernel322_f.o .libs/nb_kernel323_f.o .libs/nb_kernel324_f.o .libs/nb_kernel330_f.o .libs/nb_kernel331_f.o .libs/nb_kernel332_f.o .libs/nb_kernel333_f.o .libs/nb_kernel334_f.o .libs/nb_kernel400_f.o .libs/nb_kernel410_f.o .libs/nb_kernel420_f.o .libs/nb_kernel430_f.o .libs/nb_kernel_f77sync.o ranlib .libs/libnb_kernel.a creating libnb_kernel.la (cd .libs && rm -f libnb_kernel.la && ln -s ../libnb_kernel.la libnb_kernel.la) make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_generic.lo ../../../../src/gmxlib/nonbonded/nb_generic.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/nonbonded/nb_generic.c -fPIC -DPIC -o .libs/nb_generic.o ../../../../src/gmxlib/nonbonded/nb_generic.c: In function 'gmx_nb_generic_kernel': ../../../../src/gmxlib/nonbonded/nb_generic.c:82:16: warning: unused variable 'shift' [-Wunused-variable] int * shift; ^~~~~ ../../../../src/gmxlib/nonbonded/nb_generic.c:62:25: warning: unused variable 'gbtabscale' [-Wunused-variable] real facel,gbtabscale; ^~~~~~~~~~ ../../../../src/gmxlib/nonbonded/nb_generic.c:61:19: warning: unused variable 'nri' [-Wunused-variable] int nri,ntype,table_nelements,icoul,ivdw; ^~~ In file included from ../../../../src/gmxlib/nonbonded/nb_generic.c:43: At top level: ../../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../../include/vec.h:121, from ../../../../src/gmxlib/nonbonded/nb_generic.c:43: ../../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nb_free_energy.lo ../../../../src/gmxlib/nonbonded/nb_free_energy.c mkdir .libs mkdir: cannot create directory '.libs': File exists mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/nonbonded/nb_free_energy.c -fPIC -DPIC -o .libs/nb_free_energy.o ../../../../src/gmxlib/nonbonded/nb_free_energy.c: In function 'gmx_nb_free_energy_kernel': ../../../../src/gmxlib/nonbonded/nb_free_energy.c:100:25: warning: unused variable 'H' [-Wunused-variable] real Y,F,G,H,Fp,Geps,Heps2,eps,eps2,VV,FF; ^ ../../../../src/gmxlib/nonbonded/nb_free_energy.c:100:23: warning: unused variable 'G' [-Wunused-variable] real Y,F,G,H,Fp,Geps,Heps2,eps,eps2,VV,FF; ^ ../../../../src/gmxlib/nonbonded/nb_free_energy.c:89:19: warning: unused variable 'rinvsix' [-Wunused-variable] real rinvsix; ^~~~~~~ ../../../../src/gmxlib/nonbonded/nb_free_energy.c:86:27: warning: unused variable 'vcoul' [-Wunused-variable] real qqA,qqB,vcoul,vctot,krsq; ^~~~~ In file included from ../../../../src/gmxlib/nonbonded/nb_free_energy.c:42: At top level: ../../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../../include/vec.h:121, from ../../../../src/gmxlib/nonbonded/nb_free_energy.c:42: ../../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nonbonded.lo ../../../../src/gmxlib/nonbonded/nonbonded.c mkdir .libs mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/nonbonded -I../../../src -I../../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/nonbonded/nonbonded.c -fPIC -DPIC -o .libs/nonbonded.o ../../../../src/gmxlib/nonbonded/nonbonded.c: In function 'do_nonbonded': ../../../../src/gmxlib/nonbonded/nonbonded.c:283:18: warning: unused variable 'fp' [-Wunused-variable] FILE * fp; ^~ ../../../../src/gmxlib/nonbonded/nonbonded.c:281:18: warning: unused variable 'bWater' [-Wunused-variable] bool bWater; ^~~~~~ ../../../../src/gmxlib/nonbonded/nonbonded.c:279:43: warning: unused variable 'sz' [-Wunused-variable] int n,n0,n1,i,i0,i1,nrnb_ind,sz; ^~ ../../../../src/gmxlib/nonbonded/nonbonded.c: In function 'do_listed_vdw_q': ../../../../src/gmxlib/nonbonded/nonbonded.c:547:15: warning: unused variable 'tmplist' [-Wunused-variable] t_nblist tmplist; ^~~~~~~ ../../../../src/gmxlib/nonbonded/nonbonded.c:538:25: warning: unused variable 'i2' [-Wunused-variable] int i0=0,i1=1,i2=2; ^~ In file included from ../../../../src/gmxlib/nonbonded/nonbonded.c:53: At top level: ../../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../../src/gmxlib/nonbonded/nonbonded.c:50: ../../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../../include/vec.h:121, from ../../../../src/gmxlib/nonbonded/nonbonded.c:50: ../../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded' /bin/sh ../../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o libnonbonded.la nonbonded.lo nb_free_energy.lo nb_generic.lo nb_kernel_x86_64_sse2/libnb_kernel_x86_64_sse2.la nb_kernel/libnb_kernel.la -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath rm -fr .libs/libnonbonded.lax mkdir .libs/libnonbonded.lax rm -fr .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a mkdir .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a (cd .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a && ar x /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/.libs/libnb_kernel_x86_64_sse2.a) rm -fr .libs/libnonbonded.lax/libnb_kernel.a mkdir .libs/libnonbonded.lax/libnb_kernel.a (cd .libs/libnonbonded.lax/libnb_kernel.a && ar x /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel/.libs/libnb_kernel.a) ar cru .libs/libnonbonded.a .libs/nonbonded.o .libs/nb_free_energy.o .libs/nb_generic.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel_x86_64_sse2_test.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel430_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel410_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel400_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel334_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel333_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel332_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel331_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel330_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel314_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel313_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel312_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel311_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel310_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel304_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel303_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel302_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel301_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel300_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel234_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel233_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel232_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel231_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel230_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel214_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel213_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel212_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel211_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel210_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel204_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel203_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel202_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel201_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel200_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel134_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel133_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel132_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel131_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel130_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel114_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel113_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel112_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel111_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel110_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel104_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel103_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel102_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel101_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel100_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel030_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel_x86_64_sse2.a/nb_kernel010_x86_64_sse2.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel_f77sync.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel430_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel420_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel410_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel400_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel334_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel333_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel332_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel331_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel330_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel324_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel323_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel322_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel321_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel320_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel314_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel313_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel312_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel311_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel310_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel304_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel303_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel302_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel301_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel300_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel234_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel233_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel232_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel231_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel230_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel224_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel223_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel222_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel221_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel220_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel214_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel213_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel212_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel211_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel210_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel204_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel203_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel202_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel201_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel200_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel134_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel133_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel132_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel131_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel130_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel124_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel123_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel122_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel121_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel120_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel114_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel113_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel112_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel111_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel110_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel104_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel103_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel102_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel101_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel100_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel030_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel020_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel010_f.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel.o ranlib .libs/libnonbonded.a rm -fr .libs/libnonbonded.lax creating libnonbonded.la (cd .libs && rm -f libnonbonded.la && ln -s ../libnonbonded.la libnonbonded.la) make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded' Making all in gmx_blas make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o drot.lo ../../../../src/gmxlib/gmx_blas/drot.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/drot.c -fPIC -DPIC -o .libs/drot.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dswap.lo ../../../../src/gmxlib/gmx_blas/dswap.c mkdir .libs mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dswap.c -fPIC -DPIC -o .libs/dswap.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dcopy.lo ../../../../src/gmxlib/gmx_blas/dcopy.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dcopy.c -fPIC -DPIC -o .libs/dcopy.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dasum.lo ../../../../src/gmxlib/gmx_blas/dasum.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dasum.c -fPIC -DPIC -o .libs/dasum.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dger.lo ../../../../src/gmxlib/gmx_blas/dger.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dger.c -fPIC -DPIC -o .libs/dger.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dsyr2.lo ../../../../src/gmxlib/gmx_blas/dsyr2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dsyr2.c -fPIC -DPIC -o .libs/dsyr2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dgemm.lo ../../../../src/gmxlib/gmx_blas/dgemm.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dgemm.c -fPIC -DPIC -o .libs/dgemm.o ../../../../src/gmxlib/gmx_blas/dgemm.c: In function 'dgemm_': ../../../../src/gmxlib/gmx_blas/dgemm.c:27:19: warning: variable 'nrowb' set but not used [-Wunused-but-set-variable] int nrowa,ncola,nrowb; ^~~~~ ../../../../src/gmxlib/gmx_blas/dgemm.c:27:13: warning: variable 'ncola' set but not used [-Wunused-but-set-variable] int nrowa,ncola,nrowb; ^~~~~ ../../../../src/gmxlib/gmx_blas/dgemm.c:27:7: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable] int nrowa,ncola,nrowb; ^~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o daxpy.lo ../../../../src/gmxlib/gmx_blas/daxpy.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/daxpy.c -fPIC -DPIC -o .libs/daxpy.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ddot.lo ../../../../src/gmxlib/gmx_blas/ddot.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/ddot.c -fPIC -DPIC -o .libs/ddot.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dnrm2.lo ../../../../src/gmxlib/gmx_blas/dnrm2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dnrm2.c -fPIC -DPIC -o .libs/dnrm2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dtrmm.lo ../../../../src/gmxlib/gmx_blas/dtrmm.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dtrmm.c -fPIC -DPIC -o .libs/dtrmm.o ../../../../src/gmxlib/gmx_blas/dtrmm.c: In function 'dtrmm_': ../../../../src/gmxlib/gmx_blas/dtrmm.c:32:9: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable] int nrowa; ^~~~~ ../../../../src/gmxlib/gmx_blas/dtrmm.c:29:20: warning: variable 'info' set but not used [-Wunused-but-set-variable] int i__, j, k, info; ^~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dscal.lo ../../../../src/gmxlib/gmx_blas/dscal.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dscal.c -fPIC -DPIC -o .libs/dscal.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dgemv.lo ../../../../src/gmxlib/gmx_blas/dgemv.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dgemv.c -fPIC -DPIC -o .libs/dgemv.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o idamax.lo ../../../../src/gmxlib/gmx_blas/idamax.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/idamax.c -fPIC -DPIC -o .libs/idamax.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sasum.lo ../../../../src/gmxlib/gmx_blas/sasum.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/sasum.c -fPIC -DPIC -o .libs/sasum.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dtrsm.lo ../../../../src/gmxlib/gmx_blas/dtrsm.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dtrsm.c -fPIC -DPIC -o .libs/dtrsm.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dsymv.lo ../../../../src/gmxlib/gmx_blas/dsymv.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dsymv.c -fPIC -DPIC -o .libs/dsymv.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o scopy.lo ../../../../src/gmxlib/gmx_blas/scopy.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/scopy.c -fPIC -DPIC -o .libs/scopy.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dtrmv.lo ../../../../src/gmxlib/gmx_blas/dtrmv.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dtrmv.c -fPIC -DPIC -o .libs/dtrmv.o ../../../../src/gmxlib/gmx_blas/dtrmv.c: In function 'dtrmv_': ../../../../src/gmxlib/gmx_blas/dtrmv.c:18:29: warning: variable 'info' set but not used [-Wunused-but-set-variable] int i__, j, ix, jx, kx, info; ^~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dsyr2k.lo ../../../../src/gmxlib/gmx_blas/dsyr2k.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/dsyr2k.c -fPIC -DPIC -o .libs/dsyr2k.o ../../../../src/gmxlib/gmx_blas/dsyr2k.c: In function 'dsyr2k_': ../../../../src/gmxlib/gmx_blas/dsyr2k.c:23:7: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable] int nrowa; ^~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sgemm.lo ../../../../src/gmxlib/gmx_blas/sgemm.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/sgemm.c -fPIC -DPIC -o .libs/sgemm.o ../../../../src/gmxlib/gmx_blas/sgemm.c: In function 'sgemm_': ../../../../src/gmxlib/gmx_blas/sgemm.c:26:19: warning: variable 'nrowb' set but not used [-Wunused-but-set-variable] int nrowa,ncola,nrowb; ^~~~~ ../../../../src/gmxlib/gmx_blas/sgemm.c:26:13: warning: variable 'ncola' set but not used [-Wunused-but-set-variable] int nrowa,ncola,nrowb; ^~~~~ ../../../../src/gmxlib/gmx_blas/sgemm.c:26:7: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable] int nrowa,ncola,nrowb; ^~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o srot.lo ../../../../src/gmxlib/gmx_blas/srot.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/srot.c -fPIC -DPIC -o .libs/srot.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sswap.lo ../../../../src/gmxlib/gmx_blas/sswap.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/sswap.c -fPIC -DPIC -o .libs/sswap.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sger.lo ../../../../src/gmxlib/gmx_blas/sger.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/sger.c -fPIC -DPIC -o .libs/sger.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ssyr2.lo ../../../../src/gmxlib/gmx_blas/ssyr2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/ssyr2.c -fPIC -DPIC -o .libs/ssyr2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o saxpy.lo ../../../../src/gmxlib/gmx_blas/saxpy.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/saxpy.c -fPIC -DPIC -o .libs/saxpy.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sdot.lo ../../../../src/gmxlib/gmx_blas/sdot.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/sdot.c -fPIC -DPIC -o .libs/sdot.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sscal.lo ../../../../src/gmxlib/gmx_blas/sscal.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/sscal.c -fPIC -DPIC -o .libs/sscal.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o snrm2.lo ../../../../src/gmxlib/gmx_blas/snrm2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/snrm2.c -fPIC -DPIC -o .libs/snrm2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o strmm.lo ../../../../src/gmxlib/gmx_blas/strmm.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/strmm.c -fPIC -DPIC -o .libs/strmm.o ../../../../src/gmxlib/gmx_blas/strmm.c: In function 'strmm_': ../../../../src/gmxlib/gmx_blas/strmm.c:31:9: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable] int nrowa; ^~~~~ ../../../../src/gmxlib/gmx_blas/strmm.c:28:20: warning: variable 'info' set but not used [-Wunused-but-set-variable] int i__, j, k, info; ^~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sgemv.lo ../../../../src/gmxlib/gmx_blas/sgemv.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/sgemv.c -fPIC -DPIC -o .libs/sgemv.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ssymv.lo ../../../../src/gmxlib/gmx_blas/ssymv.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/ssymv.c -fPIC -DPIC -o .libs/ssymv.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o strsm.lo ../../../../src/gmxlib/gmx_blas/strsm.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/strsm.c -fPIC -DPIC -o .libs/strsm.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o isamax.lo ../../../../src/gmxlib/gmx_blas/isamax.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/isamax.c -fPIC -DPIC -o .libs/isamax.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o strmv.lo ../../../../src/gmxlib/gmx_blas/strmv.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/strmv.c -fPIC -DPIC -o .libs/strmv.o ../../../../src/gmxlib/gmx_blas/strmv.c: In function 'strmv_': ../../../../src/gmxlib/gmx_blas/strmv.c:18:29: warning: variable 'info' set but not used [-Wunused-but-set-variable] int i__, j, ix, jx, kx, info; ^~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ssyr2k.lo ../../../../src/gmxlib/gmx_blas/ssyr2k.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_blas -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_blas/ssyr2k.c -fPIC -DPIC -o .libs/ssyr2k.o ../../../../src/gmxlib/gmx_blas/ssyr2k.c: In function 'ssyr2k_': ../../../../src/gmxlib/gmx_blas/ssyr2k.c:22:7: warning: variable 'nrowa' set but not used [-Wunused-but-set-variable] int nrowa; ^~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' /bin/sh ../../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o libblas.la dasum.lo dcopy.lo dgemm.lo dger.lo drot.lo dswap.lo dsyr2.lo dtrmm.lo dtrsm.lo daxpy.lo ddot.lo dgemv.lo dnrm2.lo dscal.lo dsymv.lo dsyr2k.lo dtrmv.lo idamax.lo sasum.lo scopy.lo sgemm.lo sger.lo srot.lo sswap.lo ssyr2.lo strmm.lo strsm.lo saxpy.lo sdot.lo sgemv.lo snrm2.lo sscal.lo ssymv.lo ssyr2k.lo strmv.lo isamax.lo -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath ar cru .libs/libblas.a .libs/dasum.o .libs/dcopy.o .libs/dgemm.o .libs/dger.o .libs/drot.o .libs/dswap.o .libs/dsyr2.o .libs/dtrmm.o .libs/dtrsm.o .libs/daxpy.o .libs/ddot.o .libs/dgemv.o .libs/dnrm2.o .libs/dscal.o .libs/dsymv.o .libs/dsyr2k.o .libs/dtrmv.o .libs/idamax.o .libs/sasum.o .libs/scopy.o .libs/sgemm.o .libs/sger.o .libs/srot.o .libs/sswap.o .libs/ssyr2.o .libs/strmm.o .libs/strsm.o .libs/saxpy.o .libs/sdot.o .libs/sgemv.o .libs/snrm2.o .libs/sscal.o .libs/ssymv.o .libs/ssyr2k.o .libs/strmv.o .libs/isamax.o ranlib .libs/libblas.a creating libblas.la (cd .libs && rm -f libblas.la && ln -s ../libblas.la libblas.la) make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' Making all in gmx_lapack make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlamrg.lo ../../../../src/gmxlib/gmx_lapack/dlamrg.c mkdir .libs mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlamrg.c -fPIC -DPIC -o .libs/dlamrg.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dgetf2.lo ../../../../src/gmxlib/gmx_lapack/dgetf2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgetf2.c -fPIC -DPIC -o .libs/dgetf2.o ../../../../src/gmxlib/gmx_lapack/dgetf2.c: In function 'dgetf2_': ../../../../src/gmxlib/gmx_lapack/dgetf2.c:17:10: warning: variable 'one' set but not used [-Wunused-but-set-variable] double one,minusone; ^~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlarnv.lo ../../../../src/gmxlib/gmx_lapack/dlarnv.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlarnv.c -fPIC -DPIC -o .libs/dlarnv.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dorgl2.lo ../../../../src/gmxlib/gmx_lapack/dorgl2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dorgl2.c -fPIC -DPIC -o .libs/dorgl2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasq6.lo ../../../../src/gmxlib/gmx_lapack/dlasq6.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasq6.c -fPIC -DPIC -o .libs/dlasq6.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasd0.lo ../../../../src/gmxlib/gmx_lapack/dlasd0.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasd0.c -fPIC -DPIC -o .libs/dlasd0.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasda.lo ../../../../src/gmxlib/gmx_lapack/dlasda.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasda.c -fPIC -DPIC -o .libs/dlasda.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dbdsdc.lo ../../../../src/gmxlib/gmx_lapack/dbdsdc.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dbdsdc.c -fPIC -DPIC -o .libs/dbdsdc.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dormqr.lo ../../../../src/gmxlib/gmx_lapack/dormqr.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dormqr.c -fPIC -DPIC -o .libs/dormqr.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dgetrf.lo ../../../../src/gmxlib/gmx_lapack/dgetrf.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgetrf.c -fPIC -DPIC -o .libs/dgetrf.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlange.lo ../../../../src/gmxlib/gmx_lapack/dlange.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlange.c -fPIC -DPIC -o .libs/dlange.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasd1.lo ../../../../src/gmxlib/gmx_lapack/dlasd1.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasd1.c -fPIC -DPIC -o .libs/dlasd1.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dtrtri.lo ../../../../src/gmxlib/gmx_lapack/dtrtri.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dtrtri.c -fPIC -DPIC -o .libs/dtrtri.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dormtr.lo ../../../../src/gmxlib/gmx_lapack/dormtr.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dormtr.c -fPIC -DPIC -o .libs/dormtr.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasdq.lo ../../../../src/gmxlib/gmx_lapack/dlasdq.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasdq.c -fPIC -DPIC -o .libs/dlasdq.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dorglq.lo ../../../../src/gmxlib/gmx_lapack/dorglq.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dorglq.c -fPIC -DPIC -o .libs/dorglq.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dgebd2.lo ../../../../src/gmxlib/gmx_lapack/dgebd2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgebd2.c -fPIC -DPIC -o .libs/dgebd2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlanst.lo ../../../../src/gmxlib/gmx_lapack/dlanst.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlanst.c -fPIC -DPIC -o .libs/dlanst.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasr.lo ../../../../src/gmxlib/gmx_lapack/dlasr.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasr.c -fPIC -DPIC -o .libs/dlasr.o ../../../../src/gmxlib/gmx_lapack/dlasr.c: In function 'dlasr_': ../../../../src/gmxlib/gmx_lapack/dlasr.c:21:17: warning: variable 'info' set but not used [-Wunused-but-set-variable] int i__, j, info; ^~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasdt.lo ../../../../src/gmxlib/gmx_lapack/dlasdt.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasdt.c -fPIC -DPIC -o .libs/dlasdt.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dbdsqr.lo ../../../../src/gmxlib/gmx_lapack/dbdsqr.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dbdsqr.c -fPIC -DPIC -o .libs/dbdsqr.o ../../../../src/gmxlib/gmx_lapack/dbdsqr.c: In function 'dbdsqr_': ../../../../src/gmxlib/gmx_lapack/dbdsqr.c:61:12: warning: unused variable 'ftmp' [-Wunused-variable] double ftmp; ^~~~ ../../../../src/gmxlib/gmx_lapack/dbdsqr.c:59:12: warning: variable 'sminlo' set but not used [-Wunused-but-set-variable] double sminlo, tolmul; ^~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasrt.lo ../../../../src/gmxlib/gmx_lapack/dlasrt.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasrt.c -fPIC -DPIC -o .libs/dlasrt.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlabrd.lo ../../../../src/gmxlib/gmx_lapack/dlabrd.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlabrd.c -fPIC -DPIC -o .libs/dlabrd.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dorgqr.lo ../../../../src/gmxlib/gmx_lapack/dorgqr.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dorgqr.c -fPIC -DPIC -o .libs/dorgqr.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dgebrd.lo ../../../../src/gmxlib/gmx_lapack/dgebrd.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgebrd.c -fPIC -DPIC -o .libs/dgebrd.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasd2.lo ../../../../src/gmxlib/gmx_lapack/dlasd2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasd2.c -fPIC -DPIC -o .libs/dlasd2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlacpy.lo ../../../../src/gmxlib/gmx_lapack/dlacpy.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlacpy.c -fPIC -DPIC -o .libs/dlacpy.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlapy2.lo ../../../../src/gmxlib/gmx_lapack/dlapy2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlapy2.c -fPIC -DPIC -o .libs/dlapy2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dsytrd.lo ../../../../src/gmxlib/gmx_lapack/dsytrd.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dsytrd.c -fPIC -DPIC -o .libs/dsytrd.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlaset.lo ../../../../src/gmxlib/gmx_lapack/dlaset.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlaset.c -fPIC -DPIC -o .libs/dlaset.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlassq.lo ../../../../src/gmxlib/gmx_lapack/dlassq.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlassq.c -fPIC -DPIC -o .libs/dlassq.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dstebz.lo ../../../../src/gmxlib/gmx_lapack/dstebz.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dstebz.c -fPIC -DPIC -o .libs/dstebz.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dorm2l.lo ../../../../src/gmxlib/gmx_lapack/dorm2l.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dorm2l.c -fPIC -DPIC -o .libs/dorm2l.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dgetrs.lo ../../../../src/gmxlib/gmx_lapack/dgetrs.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgetrs.c -fPIC -DPIC -o .libs/dgetrs.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dgelq2.lo ../../../../src/gmxlib/gmx_lapack/dgelq2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgelq2.c -fPIC -DPIC -o .libs/dgelq2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasd3.lo ../../../../src/gmxlib/gmx_lapack/dlasd3.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasd3.c -fPIC -DPIC -o .libs/dlasd3.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlae2.lo ../../../../src/gmxlib/gmx_lapack/dlae2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlae2.c -fPIC -DPIC -o .libs/dlae2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dstegr.lo ../../../../src/gmxlib/gmx_lapack/dstegr.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dstegr.c -fPIC -DPIC -o .libs/dstegr.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasq1.lo ../../../../src/gmxlib/gmx_lapack/dlasq1.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasq1.c -fPIC -DPIC -o .libs/dlasq1.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dtrti2.lo ../../../../src/gmxlib/gmx_lapack/dtrti2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dtrti2.c -fPIC -DPIC -o .libs/dtrti2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dgetri.lo ../../../../src/gmxlib/gmx_lapack/dgetri.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgetri.c -fPIC -DPIC -o .libs/dgetri.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dorm2r.lo ../../../../src/gmxlib/gmx_lapack/dorm2r.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dorm2r.c -fPIC -DPIC -o .libs/dorm2r.o ../../../../src/gmxlib/gmx_lapack/dorm2r.c: In function 'dorm2r_': ../../../../src/gmxlib/gmx_lapack/dorm2r.c:19:42: warning: variable 'nq' set but not used [-Wunused-but-set-variable] int i__, i1, i2, i3, ic, jc, mi, ni, nq; ^~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasv2.lo ../../../../src/gmxlib/gmx_lapack/dlasv2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasv2.c -fPIC -DPIC -o .libs/dlasv2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dgelqf.lo ../../../../src/gmxlib/gmx_lapack/dgelqf.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgelqf.c -fPIC -DPIC -o .libs/dgelqf.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlarf.lo ../../../../src/gmxlib/gmx_lapack/dlarf.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlarf.c -fPIC -DPIC -o .libs/dlarf.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dstein.lo ../../../../src/gmxlib/gmx_lapack/dstein.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dstein.c -fPIC -DPIC -o .libs/dstein.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlartg.lo ../../../../src/gmxlib/gmx_lapack/dlartg.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlartg.c -fPIC -DPIC -o .libs/dlartg.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasd5.lo ../../../../src/gmxlib/gmx_lapack/dlasd5.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasd5.c -fPIC -DPIC -o .libs/dlasd5.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlaswp.lo ../../../../src/gmxlib/gmx_lapack/dlaswp.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlaswp.c -fPIC -DPIC -o .libs/dlaswp.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlaebz.lo ../../../../src/gmxlib/gmx_lapack/dlaebz.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlaebz.c -fPIC -DPIC -o .libs/dlaebz.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dormbr.lo ../../../../src/gmxlib/gmx_lapack/dormbr.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dormbr.c -fPIC -DPIC -o .libs/dormbr.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dgeqr2.lo ../../../../src/gmxlib/gmx_lapack/dgeqr2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgeqr2.c -fPIC -DPIC -o .libs/dgeqr2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasd4.lo ../../../../src/gmxlib/gmx_lapack/dlasd4.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasd4.c -fPIC -DPIC -o .libs/dlasd4.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlaruv.lo ../../../../src/gmxlib/gmx_lapack/dlaruv.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlaruv.c -fPIC -DPIC -o .libs/dlaruv.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasq2.lo ../../../../src/gmxlib/gmx_lapack/dlasq2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasq2.c -fPIC -DPIC -o .libs/dlasq2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlaed6.lo ../../../../src/gmxlib/gmx_lapack/dlaed6.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlaed6.c -fPIC -DPIC -o .libs/dlaed6.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dsterf.lo ../../../../src/gmxlib/gmx_lapack/dsterf.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dsterf.c -fPIC -DPIC -o .libs/dsterf.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasd6.lo ../../../../src/gmxlib/gmx_lapack/dlasd6.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasd6.c -fPIC -DPIC -o .libs/dlasd6.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlatrd.lo ../../../../src/gmxlib/gmx_lapack/dlatrd.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlatrd.c -fPIC -DPIC -o .libs/dlatrd.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dstevr.lo ../../../../src/gmxlib/gmx_lapack/dstevr.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dstevr.c -fPIC -DPIC -o .libs/dstevr.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasq3.lo ../../../../src/gmxlib/gmx_lapack/dlasq3.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasq3.c -fPIC -DPIC -o .libs/dlasq3.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dorml2.lo ../../../../src/gmxlib/gmx_lapack/dorml2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dorml2.c -fPIC -DPIC -o .libs/dorml2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlarfb.lo ../../../../src/gmxlib/gmx_lapack/dlarfb.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlarfb.c -fPIC -DPIC -o .libs/dlarfb.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlagtf.lo ../../../../src/gmxlib/gmx_lapack/dlagtf.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlagtf.c -fPIC -DPIC -o .libs/dlagtf.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dgeqrf.lo ../../../../src/gmxlib/gmx_lapack/dgeqrf.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgeqrf.c -fPIC -DPIC -o .libs/dgeqrf.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlarfg.lo ../../../../src/gmxlib/gmx_lapack/dlarfg.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlarfg.c -fPIC -DPIC -o .libs/dlarfg.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlas2.lo ../../../../src/gmxlib/gmx_lapack/dlas2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlas2.c -fPIC -DPIC -o .libs/dlas2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dorg2r.lo ../../../../src/gmxlib/gmx_lapack/dorg2r.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dorg2r.c -fPIC -DPIC -o .libs/dorg2r.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dormlq.lo ../../../../src/gmxlib/gmx_lapack/dormlq.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dormlq.c -fPIC -DPIC -o .libs/dormlq.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasq4.lo ../../../../src/gmxlib/gmx_lapack/dlasq4.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasq4.c -fPIC -DPIC -o .libs/dlasq4.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dsytd2.lo ../../../../src/gmxlib/gmx_lapack/dsytd2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dsytd2.c -fPIC -DPIC -o .libs/dsytd2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasd7.lo ../../../../src/gmxlib/gmx_lapack/dlasd7.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasd7.c -fPIC -DPIC -o .libs/dlasd7.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlagts.lo ../../../../src/gmxlib/gmx_lapack/dlagts.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlagts.c -fPIC -DPIC -o .libs/dlagts.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dgesdd.lo ../../../../src/gmxlib/gmx_lapack/dgesdd.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dgesdd.c -fPIC -DPIC -o .libs/dgesdd.o ../../../../src/gmxlib/gmx_lapack/dgesdd.c: In function 'dgesdd_': ../../../../src/gmxlib/gmx_lapack/dgesdd.c:40:9: warning: variable 'wntqas' set but not used [-Wunused-but-set-variable] int wntqas, lquery; ^~~~~~ ../../../../src/gmxlib/gmx_lapack/dgesdd.c:38:9: warning: variable 'minwrk' set but not used [-Wunused-but-set-variable] int minwrk, ldwrku, maxwrk, ldwkvt; ^~~~~~ ../../../../src/gmxlib/gmx_lapack/dgesdd.c:35:16: warning: variable 'wntqo' set but not used [-Wunused-but-set-variable] int wntqn, wntqo, wntqs; ^~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlarft.lo ../../../../src/gmxlib/gmx_lapack/dlarft.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlarft.c -fPIC -DPIC -o .libs/dlarft.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlascl.lo ../../../../src/gmxlib/gmx_lapack/dlascl.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlascl.c -fPIC -DPIC -o .libs/dlascl.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasd8.lo ../../../../src/gmxlib/gmx_lapack/dlasd8.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasd8.c -fPIC -DPIC -o .libs/dlasd8.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dorgbr.lo ../../../../src/gmxlib/gmx_lapack/dorgbr.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dorgbr.c -fPIC -DPIC -o .libs/dorgbr.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dormql.lo ../../../../src/gmxlib/gmx_lapack/dormql.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dormql.c -fPIC -DPIC -o .libs/dormql.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasq5.lo ../../../../src/gmxlib/gmx_lapack/dlasq5.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasq5.c -fPIC -DPIC -o .libs/dlasq5.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlaev2.lo ../../../../src/gmxlib/gmx_lapack/dlaev2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlaev2.c -fPIC -DPIC -o .libs/dlaev2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlasrt2.lo ../../../../src/gmxlib/gmx_lapack/dlasrt2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlasrt2.c -fPIC -DPIC -o .libs/dlasrt2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dsyevr.lo ../../../../src/gmxlib/gmx_lapack/dsyevr.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dsyevr.c -fPIC -DPIC -o .libs/dsyevr.o ../../../../src/gmxlib/gmx_lapack/dsyevr.c: In function 'dsyevr_': ../../../../src/gmxlib/gmx_lapack/dsyevr.c:36:12: warning: variable 'abstll' set but not used [-Wunused-but-set-variable] double abstll, bignum; ^~~~~~ ../../../../src/gmxlib/gmx_lapack/dsyevr.c:33:17: warning: variable 'ieeeok' set but not used [-Wunused-but-set-variable] int iscale, ieeeok, indibl, indifl; ^~~~~~ ../../../../src/gmxlib/gmx_lapack/dsyevr.c:21:22: warning: variable 'vuu' set but not used [-Wunused-but-set-variable] double eps, vll, vuu, tmp1; ^~~ ../../../../src/gmxlib/gmx_lapack/dsyevr.c:21:17: warning: variable 'vll' set but not used [-Wunused-but-set-variable] double eps, vll, vuu, tmp1; ^~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlansy.lo ../../../../src/gmxlib/gmx_lapack/dlansy.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlansy.c -fPIC -DPIC -o .libs/dlansy.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlarrfx.lo ../../../../src/gmxlib/gmx_lapack/dlarrfx.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlarrfx.c -fPIC -DPIC -o .libs/dlarrfx.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dsteqr.lo ../../../../src/gmxlib/gmx_lapack/dsteqr.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dsteqr.c -fPIC -DPIC -o .libs/dsteqr.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlar1vx.lo ../../../../src/gmxlib/gmx_lapack/dlar1vx.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlar1vx.c -fPIC -DPIC -o .libs/dlar1vx.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlarrbx.lo ../../../../src/gmxlib/gmx_lapack/dlarrbx.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlarrbx.c -fPIC -DPIC -o .libs/dlarrbx.o ../../../../src/gmxlib/gmx_lapack/dlarrbx.c: In function 'dlarrbx_': ../../../../src/gmxlib/gmx_lapack/dlarrbx.c:36:33: warning: variable 'error' set but not used [-Wunused-but-set-variable] double right, width, dplus, error; ^~~~~ ../../../../src/gmxlib/gmx_lapack/dlarrbx.c:34:12: warning: variable 'eps' set but not used [-Wunused-but-set-variable] double eps, tmp, left; ^~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slamrg.lo ../../../../src/gmxlib/gmx_lapack/slamrg.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slamrg.c -fPIC -DPIC -o .libs/slamrg.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sgetf2.lo ../../../../src/gmxlib/gmx_lapack/sgetf2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgetf2.c -fPIC -DPIC -o .libs/sgetf2.o ../../../../src/gmxlib/gmx_lapack/sgetf2.c: In function 'sgetf2_': ../../../../src/gmxlib/gmx_lapack/sgetf2.c:17:9: warning: variable 'one' set but not used [-Wunused-but-set-variable] float one,minusone; ^~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slarnv.lo ../../../../src/gmxlib/gmx_lapack/slarnv.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarnv.c -fPIC -DPIC -o .libs/slarnv.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sbdsdc.lo ../../../../src/gmxlib/gmx_lapack/sbdsdc.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sbdsdc.c -fPIC -DPIC -o .libs/sbdsdc.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlarrex.lo ../../../../src/gmxlib/gmx_lapack/dlarrex.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlarrex.c -fPIC -DPIC -o .libs/dlarrex.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasd0.lo ../../../../src/gmxlib/gmx_lapack/slasd0.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasd0.c -fPIC -DPIC -o .libs/slasd0.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlarrvx.lo ../../../../src/gmxlib/gmx_lapack/dlarrvx.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/dlarrvx.c -fPIC -DPIC -o .libs/dlarrvx.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sorgl2.lo ../../../../src/gmxlib/gmx_lapack/sorgl2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sorgl2.c -fPIC -DPIC -o .libs/sorgl2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasda.lo ../../../../src/gmxlib/gmx_lapack/slasda.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasda.c -fPIC -DPIC -o .libs/slasda.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasq6.lo ../../../../src/gmxlib/gmx_lapack/slasq6.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasq6.c -fPIC -DPIC -o .libs/slasq6.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sormqr.lo ../../../../src/gmxlib/gmx_lapack/sormqr.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sormqr.c -fPIC -DPIC -o .libs/sormqr.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sgetrf.lo ../../../../src/gmxlib/gmx_lapack/sgetrf.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgetrf.c -fPIC -DPIC -o .libs/sgetrf.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slange.lo ../../../../src/gmxlib/gmx_lapack/slange.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slange.c -fPIC -DPIC -o .libs/slange.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasd1.lo ../../../../src/gmxlib/gmx_lapack/slasd1.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasd1.c -fPIC -DPIC -o .libs/slasd1.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ssytrd.lo ../../../../src/gmxlib/gmx_lapack/ssytrd.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/ssytrd.c -fPIC -DPIC -o .libs/ssytrd.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasdq.lo ../../../../src/gmxlib/gmx_lapack/slasdq.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasdq.c -fPIC -DPIC -o .libs/slasdq.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sormtr.lo ../../../../src/gmxlib/gmx_lapack/sormtr.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sormtr.c -fPIC -DPIC -o .libs/sormtr.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sorglq.lo ../../../../src/gmxlib/gmx_lapack/sorglq.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sorglq.c -fPIC -DPIC -o .libs/sorglq.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasr.lo ../../../../src/gmxlib/gmx_lapack/slasr.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasr.c -fPIC -DPIC -o .libs/slasr.o ../../../../src/gmxlib/gmx_lapack/slasr.c: In function 'slasr_': ../../../../src/gmxlib/gmx_lapack/slasr.c:21:17: warning: variable 'info' set but not used [-Wunused-but-set-variable] int i__, j, info; ^~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sgebd2.lo ../../../../src/gmxlib/gmx_lapack/sgebd2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgebd2.c -fPIC -DPIC -o .libs/sgebd2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slanst.lo ../../../../src/gmxlib/gmx_lapack/slanst.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slanst.c -fPIC -DPIC -o .libs/slanst.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasdt.lo ../../../../src/gmxlib/gmx_lapack/slasdt.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasdt.c -fPIC -DPIC -o .libs/slasdt.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasrt.lo ../../../../src/gmxlib/gmx_lapack/slasrt.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasrt.c -fPIC -DPIC -o .libs/slasrt.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sbdsqr.lo ../../../../src/gmxlib/gmx_lapack/sbdsqr.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sbdsqr.c -fPIC -DPIC -o .libs/sbdsqr.o ../../../../src/gmxlib/gmx_lapack/sbdsqr.c: In function 'sbdsqr_': ../../../../src/gmxlib/gmx_lapack/sbdsqr.c:61:11: warning: unused variable 'ftmp' [-Wunused-variable] float ftmp; ^~~~ ../../../../src/gmxlib/gmx_lapack/sbdsqr.c:59:11: warning: variable 'sminlo' set but not used [-Wunused-but-set-variable] float sminlo, tolmul; ^~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slabrd.lo ../../../../src/gmxlib/gmx_lapack/slabrd.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slabrd.c -fPIC -DPIC -o .libs/slabrd.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sorgqr.lo ../../../../src/gmxlib/gmx_lapack/sorgqr.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sorgqr.c -fPIC -DPIC -o .libs/sorgqr.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sgebrd.lo ../../../../src/gmxlib/gmx_lapack/sgebrd.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgebrd.c -fPIC -DPIC -o .libs/sgebrd.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasd2.lo ../../../../src/gmxlib/gmx_lapack/slasd2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasd2.c -fPIC -DPIC -o .libs/slasd2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sgetrs.lo ../../../../src/gmxlib/gmx_lapack/sgetrs.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgetrs.c -fPIC -DPIC -o .libs/sgetrs.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slapy2.lo ../../../../src/gmxlib/gmx_lapack/slapy2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slapy2.c -fPIC -DPIC -o .libs/slapy2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slacpy.lo ../../../../src/gmxlib/gmx_lapack/slacpy.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slacpy.c -fPIC -DPIC -o .libs/slacpy.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slaset.lo ../../../../src/gmxlib/gmx_lapack/slaset.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slaset.c -fPIC -DPIC -o .libs/slaset.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sstebz.lo ../../../../src/gmxlib/gmx_lapack/sstebz.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sstebz.c -fPIC -DPIC -o .libs/sstebz.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slassq.lo ../../../../src/gmxlib/gmx_lapack/slassq.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slassq.c -fPIC -DPIC -o .libs/slassq.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sorm2l.lo ../../../../src/gmxlib/gmx_lapack/sorm2l.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sorm2l.c -fPIC -DPIC -o .libs/sorm2l.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sgelq2.lo ../../../../src/gmxlib/gmx_lapack/sgelq2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgelq2.c -fPIC -DPIC -o .libs/sgelq2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sgetri.lo ../../../../src/gmxlib/gmx_lapack/sgetri.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgetri.c -fPIC -DPIC -o .libs/sgetri.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasd3.lo ../../../../src/gmxlib/gmx_lapack/slasd3.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasd3.c -fPIC -DPIC -o .libs/slasd3.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slae2.lo ../../../../src/gmxlib/gmx_lapack/slae2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slae2.c -fPIC -DPIC -o .libs/slae2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sstegr.lo ../../../../src/gmxlib/gmx_lapack/sstegr.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sstegr.c -fPIC -DPIC -o .libs/sstegr.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o strti2.lo ../../../../src/gmxlib/gmx_lapack/strti2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/strti2.c -fPIC -DPIC -o .libs/strti2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasq1.lo ../../../../src/gmxlib/gmx_lapack/slasq1.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasq1.c -fPIC -DPIC -o .libs/slasq1.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o strtri.lo ../../../../src/gmxlib/gmx_lapack/strtri.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/strtri.c -fPIC -DPIC -o .libs/strtri.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sorm2r.lo ../../../../src/gmxlib/gmx_lapack/sorm2r.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sorm2r.c -fPIC -DPIC -o .libs/sorm2r.o ../../../../src/gmxlib/gmx_lapack/sorm2r.c: In function 'sorm2r_': ../../../../src/gmxlib/gmx_lapack/sorm2r.c:19:42: warning: variable 'nq' set but not used [-Wunused-but-set-variable] int i__, i1, i2, i3, ic, jc, mi, ni, nq; ^~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasv2.lo ../../../../src/gmxlib/gmx_lapack/slasv2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasv2.c -fPIC -DPIC -o .libs/slasv2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sgelqf.lo ../../../../src/gmxlib/gmx_lapack/sgelqf.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgelqf.c -fPIC -DPIC -o .libs/sgelqf.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sstein.lo ../../../../src/gmxlib/gmx_lapack/sstein.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sstein.c -fPIC -DPIC -o .libs/sstein.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slarf.lo ../../../../src/gmxlib/gmx_lapack/slarf.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarf.c -fPIC -DPIC -o .libs/slarf.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slartg.lo ../../../../src/gmxlib/gmx_lapack/slartg.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slartg.c -fPIC -DPIC -o .libs/slartg.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasd5.lo ../../../../src/gmxlib/gmx_lapack/slasd5.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasd5.c -fPIC -DPIC -o .libs/slasd5.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slaswp.lo ../../../../src/gmxlib/gmx_lapack/slaswp.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slaswp.c -fPIC -DPIC -o .libs/slaswp.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slaebz.lo ../../../../src/gmxlib/gmx_lapack/slaebz.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g 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'/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sgeqr2.lo ../../../../src/gmxlib/gmx_lapack/sgeqr2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgeqr2.c -fPIC -DPIC -o .libs/sgeqr2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasd4.lo ../../../../src/gmxlib/gmx_lapack/slasd4.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasd4.c -fPIC -DPIC -o .libs/slasd4.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasq2.lo ../../../../src/gmxlib/gmx_lapack/slasq2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasq2.c -fPIC -DPIC -o .libs/slasq2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slaruv.lo ../../../../src/gmxlib/gmx_lapack/slaruv.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slaruv.c -fPIC -DPIC -o .libs/slaruv.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ssterf.lo ../../../../src/gmxlib/gmx_lapack/ssterf.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/ssterf.c -fPIC -DPIC -o .libs/ssterf.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slaed6.lo ../../../../src/gmxlib/gmx_lapack/slaed6.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slaed6.c -fPIC -DPIC -o .libs/slaed6.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasd6.lo ../../../../src/gmxlib/gmx_lapack/slasd6.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasd6.c -fPIC -DPIC -o .libs/slasd6.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sstevr.lo ../../../../src/gmxlib/gmx_lapack/sstevr.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sstevr.c -fPIC -DPIC -o .libs/sstevr.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slatrd.lo ../../../../src/gmxlib/gmx_lapack/slatrd.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slatrd.c -fPIC -DPIC -o .libs/slatrd.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasq3.lo ../../../../src/gmxlib/gmx_lapack/slasq3.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasq3.c -fPIC -DPIC -o .libs/slasq3.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sorml2.lo ../../../../src/gmxlib/gmx_lapack/sorml2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sorml2.c -fPIC -DPIC -o .libs/sorml2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slarfb.lo ../../../../src/gmxlib/gmx_lapack/slarfb.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarfb.c -fPIC -DPIC -o .libs/slarfb.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sgeqrf.lo ../../../../src/gmxlib/gmx_lapack/sgeqrf.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgeqrf.c -fPIC -DPIC -o .libs/sgeqrf.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slagtf.lo ../../../../src/gmxlib/gmx_lapack/slagtf.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slagtf.c -fPIC -DPIC -o .libs/slagtf.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slarfg.lo ../../../../src/gmxlib/gmx_lapack/slarfg.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarfg.c -fPIC -DPIC -o .libs/slarfg.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slas2.lo ../../../../src/gmxlib/gmx_lapack/slas2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slas2.c -fPIC -DPIC -o .libs/slas2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sorg2r.lo ../../../../src/gmxlib/gmx_lapack/sorg2r.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sorg2r.c -fPIC -DPIC -o .libs/sorg2r.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sormlq.lo ../../../../src/gmxlib/gmx_lapack/sormlq.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sormlq.c -fPIC -DPIC -o .libs/sormlq.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ssytd2.lo ../../../../src/gmxlib/gmx_lapack/ssytd2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/ssytd2.c -fPIC -DPIC -o .libs/ssytd2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasq4.lo ../../../../src/gmxlib/gmx_lapack/slasq4.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasq4.c -fPIC -DPIC -o .libs/slasq4.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasd7.lo ../../../../src/gmxlib/gmx_lapack/slasd7.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasd7.c -fPIC -DPIC -o .libs/slasd7.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slagts.lo ../../../../src/gmxlib/gmx_lapack/slagts.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slagts.c -fPIC -DPIC -o .libs/slagts.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sgesdd.lo ../../../../src/gmxlib/gmx_lapack/sgesdd.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sgesdd.c -fPIC -DPIC -o .libs/sgesdd.o ../../../../src/gmxlib/gmx_lapack/sgesdd.c: In function 'sgesdd_': ../../../../src/gmxlib/gmx_lapack/sgesdd.c:40:9: warning: variable 'wntqas' set but not used [-Wunused-but-set-variable] int wntqas, lquery; ^~~~~~ ../../../../src/gmxlib/gmx_lapack/sgesdd.c:38:9: warning: variable 'minwrk' set but not used [-Wunused-but-set-variable] int minwrk, ldwrku, maxwrk, ldwkvt; ^~~~~~ ../../../../src/gmxlib/gmx_lapack/sgesdd.c:35:16: warning: variable 'wntqo' set but not used [-Wunused-but-set-variable] int wntqn, wntqo, wntqs; ^~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slarft.lo ../../../../src/gmxlib/gmx_lapack/slarft.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarft.c -fPIC -DPIC -o .libs/slarft.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slascl.lo ../../../../src/gmxlib/gmx_lapack/slascl.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slascl.c -fPIC -DPIC -o .libs/slascl.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasd8.lo ../../../../src/gmxlib/gmx_lapack/slasd8.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasd8.c -fPIC -DPIC -o .libs/slasd8.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sormql.lo ../../../../src/gmxlib/gmx_lapack/sormql.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sormql.c -fPIC -DPIC -o .libs/sormql.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasq5.lo ../../../../src/gmxlib/gmx_lapack/slasq5.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasq5.c -fPIC -DPIC -o .libs/slasq5.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sorgbr.lo ../../../../src/gmxlib/gmx_lapack/sorgbr.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/sorgbr.c -fPIC -DPIC -o .libs/sorgbr.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slaev2.lo ../../../../src/gmxlib/gmx_lapack/slaev2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slaev2.c -fPIC -DPIC -o .libs/slaev2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slasrt2.lo ../../../../src/gmxlib/gmx_lapack/slasrt2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slasrt2.c -fPIC -DPIC -o .libs/slasrt2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ssyevr.lo ../../../../src/gmxlib/gmx_lapack/ssyevr.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/ssyevr.c -fPIC -DPIC -o .libs/ssyevr.o ../../../../src/gmxlib/gmx_lapack/ssyevr.c: In function 'ssyevr_': ../../../../src/gmxlib/gmx_lapack/ssyevr.c:36:11: warning: variable 'abstll' set but not used [-Wunused-but-set-variable] float abstll, bignum; ^~~~~~ ../../../../src/gmxlib/gmx_lapack/ssyevr.c:33:17: warning: variable 'ieeeok' set but not used [-Wunused-but-set-variable] int iscale, ieeeok, indibl, indifl; ^~~~~~ ../../../../src/gmxlib/gmx_lapack/ssyevr.c:21:21: warning: variable 'vuu' set but not used [-Wunused-but-set-variable] float eps, vll, vuu, tmp1; ^~~ ../../../../src/gmxlib/gmx_lapack/ssyevr.c:21:16: warning: variable 'vll' set but not used [-Wunused-but-set-variable] float eps, vll, vuu, tmp1; ^~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slarrfx.lo ../../../../src/gmxlib/gmx_lapack/slarrfx.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarrfx.c -fPIC -DPIC -o .libs/slarrfx.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slansy.lo ../../../../src/gmxlib/gmx_lapack/slansy.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slansy.c -fPIC -DPIC -o .libs/slansy.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ssteqr.lo ../../../../src/gmxlib/gmx_lapack/ssteqr.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/ssteqr.c -fPIC -DPIC -o .libs/ssteqr.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slar1vx.lo ../../../../src/gmxlib/gmx_lapack/slar1vx.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slar1vx.c -fPIC -DPIC -o .libs/slar1vx.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slarrbx.lo ../../../../src/gmxlib/gmx_lapack/slarrbx.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarrbx.c -fPIC -DPIC -o .libs/slarrbx.o ../../../../src/gmxlib/gmx_lapack/slarrbx.c: In function 'slarrbx_': ../../../../src/gmxlib/gmx_lapack/slarrbx.c:36:32: warning: variable 'error' set but not used [-Wunused-but-set-variable] float right, width, dplus, error; ^~~~~ ../../../../src/gmxlib/gmx_lapack/slarrbx.c:34:11: warning: variable 'eps' set but not used [-Wunused-but-set-variable] float eps, tmp, left; ^~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ilasrt2.lo ../../../../src/gmxlib/gmx_lapack/ilasrt2.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/ilasrt2.c -fPIC -DPIC -o .libs/ilasrt2.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slarrex.lo ../../../../src/gmxlib/gmx_lapack/slarrex.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarrex.c -fPIC -DPIC -o .libs/slarrex.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o slarrvx.lo ../../../../src/gmxlib/gmx_lapack/slarrvx.c mpicc -DHAVE_CONFIG_H -I. -I../../../../src/gmxlib/gmx_lapack -I../../../src -I../../../../include -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../../src/gmxlib/gmx_lapack/slarrvx.c -fPIC -DPIC -o .libs/slarrvx.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' /bin/sh ../../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o liblapack.la dbdsdc.lo dgetf2.lo dlamrg.lo dlarnv.lo dlasd0.lo dlasda.lo dlasq6.lo dorgl2.lo dormqr.lo dbdsqr.lo dgetrf.lo dlange.lo dlasd1.lo dtrtri.lo dlasdq.lo dlasr.lo dorglq.lo dormtr.lo dgebd2.lo dlabrd.lo dlanst.lo dlasd2.lo dlasdt.lo dlasrt.lo dorgqr.lo dstebz.lo dgebrd.lo dsytrd.lo dlacpy.lo dlapy2.lo dlasd3.lo dlaset.lo dlassq.lo dorm2l.lo dgetrs.lo dstegr.lo dgelq2.lo dlae2.lo dlasd4.lo dlasq1.lo dtrti2.lo dgetri.lo dlasv2.lo dorm2r.lo dstein.lo dgelqf.lo dlaebz.lo dlarf.lo dlartg.lo dlasd5.lo dlasq2.lo dlaswp.lo dormbr.lo dsterf.lo dgeqr2.lo dlaed6.lo dlarfb.lo dlaruv.lo dlasd6.lo dlasq3.lo dlatrd.lo dorml2.lo dstevr.lo dgeqrf.lo dlagtf.lo dlarfg.lo dlas2.lo dlasd7.lo dlasq4.lo dorg2r.lo dormlq.lo dsytd2.lo dgesdd.lo dlagts.lo dlarft.lo dlascl.lo dlasd8.lo dlasq5.lo dorgbr.lo dormql.lo dlaev2.lo dsteqr.lo dsyevr.lo dlasrt2.lo dlansy.lo dlar1vx.lo dlarrbx.lo dlarrex.lo dlarrfx.lo dlarrvx.lo sbdsdc.lo sgetf2.lo slamrg.lo slarnv.lo slasd0.lo slasda.lo slasq6.lo sorgl2.lo sormqr.lo sbdsqr.lo sgetrf.lo slange.lo slasd1.lo ssytrd.lo slasdq.lo slasr.lo sorglq.lo sormtr.lo sgebd2.lo slabrd.lo slanst.lo slasd2.lo slasdt.lo slasrt.lo sorgqr.lo sstebz.lo sgebrd.lo sgetrs.lo slacpy.lo slapy2.lo slasd3.lo slaset.lo slassq.lo sorm2l.lo sgetri.lo sstegr.lo sgelq2.lo slae2.lo slasd4.lo slasq1.lo strti2.lo strtri.lo slasv2.lo sorm2r.lo sstein.lo sgelqf.lo slaebz.lo slarf.lo slartg.lo slasd5.lo slasq2.lo slaswp.lo sormbr.lo ssterf.lo sgeqr2.lo slaed6.lo slarfb.lo slaruv.lo slasd6.lo slasq3.lo slatrd.lo sorml2.lo sstevr.lo sgeqrf.lo slagtf.lo slarfg.lo slas2.lo slasd7.lo slasq4.lo sorg2r.lo sormlq.lo ssytd2.lo sgesdd.lo slagts.lo slarft.lo slascl.lo slasd8.lo slasq5.lo sorgbr.lo sormql.lo slaev2.lo ssteqr.lo ssyevr.lo slasrt2.lo slansy.lo slar1vx.lo slarrbx.lo slarrex.lo slarrfx.lo slarrvx.lo ilasrt2.lo -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath ar cru .libs/liblapack.a .libs/dbdsdc.o .libs/dgetf2.o .libs/dlamrg.o .libs/dlarnv.o .libs/dlasd0.o .libs/dlasda.o .libs/dlasq6.o .libs/dorgl2.o .libs/dormqr.o .libs/dbdsqr.o .libs/dgetrf.o .libs/dlange.o .libs/dlasd1.o .libs/dtrtri.o .libs/dlasdq.o .libs/dlasr.o .libs/dorglq.o .libs/dormtr.o .libs/dgebd2.o .libs/dlabrd.o .libs/dlanst.o .libs/dlasd2.o .libs/dlasdt.o .libs/dlasrt.o .libs/dorgqr.o .libs/dstebz.o .libs/dgebrd.o .libs/dsytrd.o .libs/dlacpy.o .libs/dlapy2.o .libs/dlasd3.o .libs/dlaset.o .libs/dlassq.o .libs/dorm2l.o .libs/dgetrs.o .libs/dstegr.o .libs/dgelq2.o .libs/dlae2.o .libs/dlasd4.o .libs/dlasq1.o .libs/dtrti2.o .libs/dgetri.o .libs/dlasv2.o .libs/dorm2r.o .libs/dstein.o .libs/dgelqf.o .libs/dlaebz.o .libs/dlarf.o .libs/dlartg.o .libs/dlasd5.o .libs/dlasq2.o .libs/dlaswp.o .libs/dormbr.o .libs/dsterf.o .libs/dgeqr2.o .libs/dlaed6.o .libs/dlarfb.o .libs/dlaruv.o .libs/dlasd6.o .libs/dlasq3.o .libs/dlatrd.o .libs/dorml2.o .libs/dstevr.o .libs/dgeqrf.o .libs/dlagtf.o .libs/dlarfg.o .libs/dlas2.o .libs/dlasd7.o .libs/dlasq4.o .libs/dorg2r.o .libs/dormlq.o .libs/dsytd2.o .libs/dgesdd.o .libs/dlagts.o .libs/dlarft.o .libs/dlascl.o .libs/dlasd8.o .libs/dlasq5.o .libs/dorgbr.o .libs/dormql.o .libs/dlaev2.o .libs/dsteqr.o .libs/dsyevr.o .libs/dlasrt2.o .libs/dlansy.o .libs/dlar1vx.o .libs/dlarrbx.o .libs/dlarrex.o .libs/dlarrfx.o .libs/dlarrvx.o .libs/sbdsdc.o .libs/sgetf2.o .libs/slamrg.o .libs/slarnv.o .libs/slasd0.o .libs/slasda.o .libs/slasq6.o .libs/sorgl2.o .libs/sormqr.o .libs/sbdsqr.o .libs/sgetrf.o .libs/slange.o .libs/slasd1.o .libs/ssytrd.o .libs/slasdq.o .libs/slasr.o .libs/sorglq.o .libs/sormtr.o .libs/sgebd2.o .libs/slabrd.o .libs/slanst.o .libs/slasd2.o .libs/slasdt.o .libs/slasrt.o .libs/sorgqr.o .libs/sstebz.o .libs/sgebrd.o .libs/sgetrs.o .libs/slacpy.o .libs/slapy2.o .libs/slasd3.o .libs/slaset.o .libs/slassq.o .libs/sorm2l.o .libs/sgetri.o .libs/sstegr.o .libs/sgelq2.o .libs/slae2.o .libs/slasd4.o .libs/slasq1.o .libs/strti2.o .libs/strtri.o .libs/slasv2.o .libs/sorm2r.o .libs/sstein.o .libs/sgelqf.o .libs/slaebz.o .libs/slarf.o .libs/slartg.o .libs/slasd5.o .libs/slasq2.o .libs/slaswp.o .libs/sormbr.o .libs/ssterf.o .libs/sgeqr2.o .libs/slaed6.o .libs/slarfb.o .libs/slaruv.o .libs/slasd6.o .libs/slasq3.o .libs/slatrd.o .libs/sorml2.o .libs/sstevr.o .libs/sgeqrf.o .libs/slagtf.o .libs/slarfg.o .libs/slas2.o .libs/slasd7.o .libs/slasq4.o .libs/sorg2r.o .libs/sormlq.o .libs/ssytd2.o .libs/sgesdd.o .libs/slagts.o .libs/slarft.o .libs/slascl.o .libs/slasd8.o .libs/slasq5.o .libs/sorgbr.o .libs/sormql.o .libs/slaev2.o .libs/ssteqr.o .libs/ssyevr.o .libs/slasrt2.o .libs/slansy.o .libs/slar1vx.o .libs/slarrbx.o .libs/slarrex.o .libs/slarrfx.o .libs/slarrvx.o .libs/ilasrt2.o ranlib .libs/liblapack.a creating liblapack.la (cd .libs && rm -f liblapack.la && ln -s ../liblapack.la liblapack.la) make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o calcgrid.lo ../../../src/gmxlib/calcgrid.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/calcgrid.c -fPIC -DPIC -o .libs/calcgrid.o ../../../src/gmxlib/calcgrid.c: In function 'calc_grid': ../../../src/gmxlib/calcgrid.c:89:8: warning: unused variable 'tmp' [-Wunused-variable] real tmp[3]; ^~~ ../../../src/gmxlib/calcgrid.c:86:10: warning: unused variable 'j' [-Wunused-variable] int i,j,nmin[DIM]; ^ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o copyrite.lo ../../../src/gmxlib/copyrite.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/copyrite.c -fPIC -DPIC -o .libs/copyrite.o ../../../src/gmxlib/copyrite.c: In function 'cool_quote': ../../../src/gmxlib/copyrite.c:181:9: warning: unused variable 's' [-Wunused-variable] char *s,*ptr; ^ ../../../src/gmxlib/copyrite.c: In function 'please_cite': ../../../src/gmxlib/copyrite.c:469:8: warning: unused variable 'j' [-Wunused-variable] int j,index; ^ In file included from ../../../include/statutil.h:51, from ../../../src/gmxlib/copyrite.c:53: At top level: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o calch.lo ../../../src/gmxlib/calch.c mkdir .libs mkdir: cannot create directory '.libs': File exists mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/calch.c -fPIC -DPIC -o .libs/calch.o ../../../src/gmxlib/calch.c: In function 'gen_waterhydrogen': ../../../src/gmxlib/calch.c:81:14: warning: unused variable 'kkk' [-Wunused-variable] rvec kkk; ^~~ In file included from ../../../src/gmxlib/calch.c:43: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../src/gmxlib/calch.c:42: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o 3dview.lo ../../../src/gmxlib/3dview.c mkdir .libs mkdir: cannot create directory '.libs': File exists mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/3dview.c -fPIC -DPIC -o .libs/3dview.o ../../../src/gmxlib/3dview.c: In function 'reset_view': ../../../src/gmxlib/3dview.c:282:8: warning: unused variable 'i' [-Wunused-variable] int i; ^ In file included from ../../../src/gmxlib/3dview.c:47: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/gmxlib/3dview.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o atomprop.lo ../../../src/gmxlib/atomprop.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/atomprop.c -fPIC -DPIC -o .libs/atomprop.o In file included from ../../../src/gmxlib/atomprop.c:52: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/gmxlib/atomprop.c:45: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o do_fit.lo ../../../src/gmxlib/do_fit.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/do_fit.c -fPIC -DPIC -o .libs/do_fit.o ../../../src/gmxlib/do_fit.c: In function 'calc_fit_R': ../../../src/gmxlib/do_fit.c:103:18: warning: unused variable 'm' [-Wunused-variable] int c,r,n,j,m,i,irot,s; ^ ../../../src/gmxlib/do_fit.c: In function 'do_fit_ndim': ../../../src/gmxlib/do_fit.c:214:10: warning: unused variable 'i' [-Wunused-variable] int i,j,m,r,c; ^ In file included from ../../../src/gmxlib/do_fit.c:44: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../src/gmxlib/do_fit.c:40: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o disre.lo ../../../src/gmxlib/disre.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/disre.c -fPIC -DPIC -o .libs/disre.o ../../../src/gmxlib/disre.c: In function 'init_disres': ../../../src/gmxlib/disre.c:62:19: warning: variable 'ip' set but not used [-Wunused-but-set-variable] t_iparams *ip; ^~ ../../../src/gmxlib/disre.c:61:26: warning: unused variable 'i' [-Wunused-variable] int fa,nmol,i,npair,np; ^ ../../../src/gmxlib/disre.c: In function 'calc_disres_R_6': ../../../src/gmxlib/disre.c:217:23: warning: unused variable 'dt' [-Wunused-variable] ivec it,jt,dt; ^~ ../../../src/gmxlib/disre.c:217:20: warning: unused variable 'jt' [-Wunused-variable] ivec it,jt,dt; ^~ ../../../src/gmxlib/disre.c:217:17: warning: unused variable 'it' [-Wunused-variable] ivec it,jt,dt; ^~ ../../../src/gmxlib/disre.c:212:37: warning: unused variable 'm' [-Wunused-variable] int fa,res,i,pair,ki,kj,m; ^ ../../../src/gmxlib/disre.c:212:34: warning: unused variable 'kj' [-Wunused-variable] int fa,res,i,pair,ki,kj,m; ^~ ../../../src/gmxlib/disre.c:212:31: warning: unused variable 'ki' [-Wunused-variable] int fa,res,i,pair,ki,kj,m; ^~ ../../../src/gmxlib/disre.c:212:24: warning: unused variable 'i' [-Wunused-variable] int fa,res,i,pair,ki,kj,m; ^ ../../../src/gmxlib/disre.c: In function 'ta_disres': ../../../src/gmxlib/disre.c:338:20: warning: unused variable 'jt' [-Wunused-variable] ivec it,jt,dt; ^~ ../../../src/gmxlib/disre.c:338:17: warning: unused variable 'it' [-Wunused-variable] ivec it,jt,dt; ^~ In file included from ../../../src/gmxlib/disre.c:52: At top level: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/gmxlib/disre.c:47: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/gmxlib/disre.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o checkpoint.lo ../../../src/gmxlib/checkpoint.c mkdir .libs mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/checkpoint.c -fPIC -DPIC -o .libs/checkpoint.o ../../../src/gmxlib/checkpoint.c: In function 'do_cpte_ints': ../../../src/gmxlib/checkpoint.c:305:16: warning: unused variable 'i' [-Wunused-variable] int nf,dt,i; ^ ../../../src/gmxlib/checkpoint.c: In function 'do_cpte_doubles': ../../../src/gmxlib/checkpoint.c:371:16: warning: unused variable 'i' [-Wunused-variable] int nf,dt,i; ^ ../../../src/gmxlib/checkpoint.c: In function 'do_cpt_header': ../../../src/gmxlib/checkpoint.c:534:10: warning: unused variable 'i' [-Wunused-variable] int i; ^ ../../../src/gmxlib/checkpoint.c: In function 'write_checkpoint': ../../../src/gmxlib/checkpoint.c:837:30: warning: unused variable 'i' [-Wunused-variable] int flags_eks,flags_enh,i; ^ ../../../src/gmxlib/checkpoint.c:833:29: warning: unused variable 'flag_64bit' [-Wunused-variable] int nppnodes,npmenodes,flag_64bit; ^~~~~~~~~~ ../../../src/gmxlib/checkpoint.c: In function 'read_checkpoint': ../../../src/gmxlib/checkpoint.c:1254:40: warning: left-hand operand of comma expression has no effect [-Wunused-value] if (outputfiles[i].filename,outputfiles[i].offset < 0) ^ ../../../src/gmxlib/checkpoint.c:1036:7: warning: unused variable 'filename' [-Wunused-variable] char filename[STRLEN]; ^~~~~~~~ ../../../src/gmxlib/checkpoint.c:1033:15: warning: unused variable 'j' [-Wunused-variable] int fp,i,j; ^ ../../../src/gmxlib/checkpoint.c: In function 'list_checkpoint': ../../../src/gmxlib/checkpoint.c:1421:12: warning: unused variable 'j' [-Wunused-variable] int i,j; ^ ../../../src/gmxlib/checkpoint.c:1421:10: warning: unused variable 'i' [-Wunused-variable] int i,j; ^ ../../../src/gmxlib/checkpoint.c:1420:10: warning: unused variable 'indent' [-Wunused-variable] int indent; ^~~~~~ In file included from ../../../src/gmxlib/checkpoint.c:34: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/gmxlib/checkpoint.c:34: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/gmxlib/checkpoint.c:32: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_fatal.lo ../../../src/gmxlib/gmx_fatal.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/gmx_fatal.c -fPIC -DPIC -o .libs/gmx_fatal.o ../../../src/gmxlib/gmx_fatal.c:226:13: warning: 'fatal_error' defined but not used [-Wunused-function] static void fatal_error(int f_errno,const char *fmt,...) ^~~~~~~~~~~ ../../../src/gmxlib/gmx_fatal.c:115:13: warning: 'bputi' defined but not used [-Wunused-function] static void bputi(char *msg,int *len,int val,int radix,int fld,bool bNeg) ^~~~~ In file included from ../../../src/gmxlib/gmx_fatal.c:50: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/gmxlib/gmx_fatal.c:46: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ewald_util.lo ../../../src/gmxlib/ewald_util.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/ewald_util.c -fPIC -DPIC -o .libs/ewald_util.o In file included from ../../../src/gmxlib/ewald_util.c:43: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/gmxlib/ewald_util.c:43: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o enxio.lo ../../../src/gmxlib/enxio.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/enxio.c -fPIC -DPIC -o .libs/enxio.o ../../../src/gmxlib/enxio.c: In function 'empty_file': ../../../src/gmxlib/enxio.c:220:8: warning: variable 'ret' set but not used [-Wunused-but-set-variable] int ret; ^~~ ../../../src/gmxlib/enxio.c: In function 'get_enx_state': ../../../src/gmxlib/enxio.c:443:16: warning: unused variable 'pcouplmu_nm' [-Wunused-variable] static char *pcouplmu_nm[] = { ^~~~~~~~~~~ At top level: ../../../src/gmxlib/enxio.c:443:16: warning: 'pcouplmu_nm' defined but not used [-Wunused-variable] In file included from ../../../src/gmxlib/enxio.c:46: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/gmxlib/enxio.c:46: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ffscanf.lo ../../../src/gmxlib/ffscanf.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/ffscanf.c -fPIC -DPIC -o .libs/ffscanf.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o confio.lo ../../../src/gmxlib/confio.c mkdir .libs mkdir: cannot create directory '.libs': File exists mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/confio.c -fPIC -DPIC -o .libs/confio.o ../../../src/gmxlib/confio.c: In function 'read_espresso_conf': ../../../src/gmxlib/confio.c:448:21: warning: unused variable 'npar' [-Wunused-variable] int natoms,level,npar,r,nprop,p,i,m; ^~~~ ../../../src/gmxlib/confio.c:448:8: warning: unused variable 'natoms' [-Wunused-variable] int natoms,level,npar,r,nprop,p,i,m; ^~~~~~ ../../../src/gmxlib/confio.c: In function 'read_stx_conf': ../../../src/gmxlib/confio.c:1298:14: warning: unused variable 'd' [-Wunused-variable] real d,r1,r2; ^ ../../../src/gmxlib/confio.c:1293:14: warning: unused variable 'buf' [-Wunused-variable] char buf[256]; ^~~ At top level: ../../../src/gmxlib/confio.c:864:13: warning: 'get_conf' defined but not used [-Wunused-function] static void get_conf(FILE *in, char *title, int *natoms, ^~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/gmxlib/confio.c:59: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/gmxlib/confio.c:57: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/gmxlib/confio.c:54: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/gmxlib/confio.c:49: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/gmxlib/confio.c:49: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ ../../../src/gmxlib/confio.c: In function 'write_hconf_box': ../../../src/gmxlib/confio.c:983:20: warning: '%d' directive writing between 2 and 10 bytes into a region of size between 7 and 75 [-Wformat-overflow=] sprintf(format,"%%%d.%df%%%d.%df%%%d.%df" ^~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../src/gmxlib/confio.c:984:17: note: format string is defined here "%%%d.%df%%%d.%df%%%d.%df%%%d.%df%%%d.%df%%%d.%df\n", ^~ ../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [10, 2147483647] sprintf(format,"%%%d.%df%%%d.%df%%%d.%df" ^~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [5, 2147483647] ../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [10, 2147483647] ../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [5, 2147483647] ../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [10, 2147483647] ../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [5, 2147483647] ../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [10, 2147483647] ../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [5, 2147483647] ../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [10, 2147483647] ../../../src/gmxlib/confio.c:983:20: note: directive argument in the range [5, 2147483647] In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../src/gmxlib/confio.c:41: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 56 and 209 bytes into a destination of size 100 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o cinvsqrtdata.lo ../../../src/gmxlib/cinvsqrtdata.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/cinvsqrtdata.c -fPIC -DPIC -o .libs/cinvsqrtdata.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ifunc.lo ../../../src/gmxlib/ifunc.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/ifunc.c -fPIC -DPIC -o .libs/ifunc.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o futil.lo ../../../src/gmxlib/futil.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/futil.c -fPIC -DPIC -o .libs/futil.o ../../../src/gmxlib/futil.c: In function 'ffopen': ../../../src/gmxlib/futil.c:287:18: warning: unused variable 'bf' [-Wunused-variable] char buf[256],*bf,*bufsize=0,*ptr; ^~ ../../../src/gmxlib/futil.c: In function 'get_libdir': ../../../src/gmxlib/futil.c:397:22: warning: variable 'pdum' set but not used [-Wunused-but-set-variable] char *dir,*ptr,*s,*pdum; ^~~~ ../../../src/gmxlib/futil.c:395:8: warning: unused variable 'test_file' [-Wunused-variable] char test_file[MAX_PATHBUF]; ^~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/gmxlib/futil.c:53: At top level: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ ../../../src/gmxlib/futil.c: In function 'ffopen': ../../../src/gmxlib/futil.c:187:28: warning: '%s' directive writing up to 255 bytes into a region of size 244 [-Wformat-overflow=] sprintf(buf,"gunzip -c < %s",fn); ^~ ../../../src/gmxlib/futil.c:329:12: ff=gunzip(buf,mode); ~~~ In file included from /usr/include/stdio.h:862, from ../../../src/gmxlib/futil.c:41: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 13 and 268 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../src/gmxlib/futil.c:173:32: warning: '%s' directive writing up to 255 bytes into a region of size 240 [-Wformat-overflow=] sprintf(buf,"uncompress -c < %s",fn); ^~ ../../../src/gmxlib/futil.c:324:21: ff=uncompress(buf,mode); ~~~ In file included from /usr/include/stdio.h:862, from ../../../src/gmxlib/futil.c:41: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 17 and 272 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gbutil.lo ../../../src/gmxlib/gbutil.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/gbutil.c -fPIC -DPIC -o .libs/gbutil.o In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/gmxlib/gbutil.c:45: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/gmxlib/gbutil.c:43: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/gmxlib/gbutil.c:43: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o filenm.lo ../../../src/gmxlib/filenm.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/filenm.c -fPIC -DPIC -o .libs/filenm.o ../../../src/gmxlib/filenm.c: In function 'add_suffix_to_output_names': ../../../src/gmxlib/filenm.c:811:12: warning: unused variable 'pos' [-Wunused-variable] int i,j,pos; ^~~ In file included from ../../../include/wman.h:44, from ../../../src/gmxlib/filenm.c:48: At top level: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ ../../../src/gmxlib/filenm.c: In function 'add_suffix_to_output_names': ../../../src/gmxlib/filenm.c:825:27: warning: '.' directive writing 1 byte into a region of size between 0 and 4095 [-Wformat-overflow=] sprintf(newname,"%s.%s.%s",buf,suffix,extpos+1); ^ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../src/gmxlib/filenm.c:41: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 3 or more bytes (assuming 4098) into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o invblock.lo ../../../src/gmxlib/invblock.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/invblock.c -fPIC -DPIC -o .libs/invblock.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o macros.lo ../../../src/gmxlib/macros.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/macros.c -fPIC -DPIC -o .libs/macros.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sparsematrix.lo ../../../src/gmxlib/sparsematrix.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/sparsematrix.c -fPIC -DPIC -o .libs/sparsematrix.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmxfio.lo ../../../src/gmxlib/gmxfio.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/gmxfio.c -fPIC -DPIC -o .libs/gmxfio.o ../../../src/gmxlib/gmxfio.c: In function 'gmx_fio_fopen': ../../../src/gmxlib/gmxfio.c:803:8: warning: unused variable 'fp' [-Wunused-variable] FILE *fp; ^~ ../../../src/gmxlib/gmxfio.c: In function 'gmx_fio_get_output_file_positions': ../../../src/gmxlib/gmxfio.c:885:27: warning: unused variable 'pos' [-Wunused-variable] long pos; ^~~ ../../../src/gmxlib/gmxfio.c:884:34: warning: unused variable 'pos_lo' [-Wunused-variable] int pos_hi,pos_lo; ^~~~~~ ../../../src/gmxlib/gmxfio.c:884:27: warning: unused variable 'pos_hi' [-Wunused-variable] int pos_hi,pos_lo; ^~~~~~ ../../../src/gmxlib/gmxfio.c:883:36: warning: unused variable 'rc' [-Wunused-variable] int i,nfiles,rc,nalloc; ^~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o maths.lo ../../../src/gmxlib/maths.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/maths.c -fPIC -DPIC -o .libs/maths.o ../../../src/gmxlib/maths.c: In function 'gmx_erfc': ../../../src/gmxlib/maths.c:291:31: warning: unused variable 'z4' [-Wunused-variable] double r1,r2,s1,s2,s3,z2,z4; ^~ ../../../src/gmxlib/maths.c:291:28: warning: unused variable 'z2' [-Wunused-variable] double r1,r2,s1,s2,s3,z2,z4; ^~ ../../../src/gmxlib/maths.c:291:25: warning: unused variable 's3' [-Wunused-variable] double r1,r2,s1,s2,s3,z2,z4; ^~ ../../../src/gmxlib/maths.c:291:22: warning: unused variable 's2' [-Wunused-variable] double r1,r2,s1,s2,s3,z2,z4; ^~ ../../../src/gmxlib/maths.c:291:19: warning: unused variable 's1' [-Wunused-variable] double r1,r2,s1,s2,s3,z2,z4; ^~ ../../../src/gmxlib/maths.c:291:16: warning: unused variable 'r2' [-Wunused-variable] double r1,r2,s1,s2,s3,z2,z4; ^~ ../../../src/gmxlib/maths.c:291:13: warning: unused variable 'r1' [-Wunused-variable] double r1,r2,s1,s2,s3,z2,z4; ^~ ../../../src/gmxlib/maths.c:337:13: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if(hx<0&&ix>=0x40180000) ^~ ../../../src/gmxlib/maths.c:339:10: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' R=rb0+s*(rb1+s*(rb2+s*(rb3+s*(rb4+s*(rb5+s*rb6))))); ^ In file included from ../../../src/gmxlib/maths.c:43: At top level: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o index.lo ../../../src/gmxlib/index.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/index.c -fPIC -DPIC -o .libs/index.o ../../../src/gmxlib/index.c: In function 'analyse_prot': ../../../src/gmxlib/index.c:298:15: warning: unused variable 'nnpres' [-Wunused-variable] int nra,nnpres,npres; ^~~~~~ ../../../src/gmxlib/index.c: In function 'init_index': ../../../src/gmxlib/index.c:532:19: warning: variable 'nread' set but not used [-Wunused-but-set-variable] int i,j,ng,nread; ^~~~~ In file included from ../../../src/gmxlib/index.c:51: At top level: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/gmxlib/index.c:48: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o main.lo ../../../src/gmxlib/main.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/main.c -fPIC -DPIC -o .libs/main.o ../../../src/gmxlib/main.c: In function 'par_fn': ../../../src/gmxlib/main.c:68:7: warning: unused variable 'n' [-Wunused-variable] int n; ^ ../../../src/gmxlib/main.c: In function 'gmx_log_open': ../../../src/gmxlib/main.c:124:12: warning: unused variable 'testlen' [-Wunused-variable] int len,testlen,pid; ^~~~~~~ ../../../src/gmxlib/main.c: In function 'init_par': ../../../src/gmxlib/main.c:309:13: warning: unused variable 'i' [-Wunused-variable] int i; ^ In file included from ../../../include/pull.h:44, from ../../../include/mdrun.h:56, from ../../../src/gmxlib/main.c:52: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../include/pull.h:44, from ../../../include/mdrun.h:56, from ../../../src/gmxlib/main.c:52: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/mdrun.h:50, from ../../../src/gmxlib/main.c:52: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o bondfree.lo ../../../src/gmxlib/bondfree.c mkdir .libs mkdir: cannot create directory '.libs': File exists mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/bondfree.c -fPIC -DPIC -o .libs/bondfree.o ../../../src/gmxlib/bondfree.c: In function 'FENE_bonds': ../../../src/gmxlib/bondfree.c:220:9: warning: unused variable 'dr' [-Wunused-variable] real dr,dr2,bm2,omdr2obm2,fbond,vbond,fij,vtot; ^~ ../../../src/gmxlib/bondfree.c: In function 'do_1_thole': ../../../src/gmxlib/bondfree.c:534:20: warning: unused variable 'r12n' [-Wunused-variable] real r12sq,r12_1,r12n,r12bar,v0,v1,fscal,ebar,fff; ^~~~ ../../../src/gmxlib/bondfree.c: In function 'posres': ../../../src/gmxlib/bondfree.c:1136:19: warning: unused variable 'fc' [-Wunused-variable] real v,vtot,fm,*fc; ^~ ../../../src/gmxlib/bondfree.c:1134:22: warning: unused variable 'ki' [-Wunused-variable] int i,ai,m,d,type,ki,npbcdim=0; ^~ ../../../src/gmxlib/bondfree.c: In function 'cross_bond_angle': ../../../src/gmxlib/bondfree.c:1687:32: warning: variable 't3' set but not used [-Wunused-but-set-variable] int i,ai,aj,ak,type,m,t1,t2,t3; ^~ ../../../src/gmxlib/bondfree.c: In function 'bonded_tab': ../../../src/gmxlib/bondfree.c:1762:10: warning: unused variable 'f' [-Wunused-variable] real v,f,dvdl; ^ ../../../src/gmxlib/bondfree.c:1762:8: warning: unused variable 'v' [-Wunused-variable] real v,f,dvdl; ^ ../../../src/gmxlib/bondfree.c: In function 'tab_angles': ../../../src/gmxlib/bondfree.c:1887:12: warning: unused variable 'snt' [-Wunused-variable] real snt,st,sth; ^~~ In file included from ../../../src/gmxlib/bondfree.c:56: At top level: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../src/gmxlib/bondfree.c:42: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/gmxlib/bondfree.c:42: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o names.lo ../../../src/gmxlib/names.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/names.c -fPIC -DPIC -o .libs/names.o make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o orires.lo ../../../src/gmxlib/orires.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/orires.c -fPIC -DPIC -o .libs/orires.o ../../../src/gmxlib/orires.c: In function 'init_orires': ../../../src/gmxlib/orires.c:59:26: warning: unused variable 'nr' [-Wunused-variable] int i,j,d,ex,nmol,nr,*nr_ex; ^~ In file included from ../../../src/gmxlib/orires.c:49: At top level: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/gmxlib/orires.c:43: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/gmxlib/orires.c:43: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o mtxio.lo ../../../src/gmxlib/mtxio.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/mtxio.c -fPIC -DPIC -o .libs/mtxio.o ../../../src/gmxlib/mtxio.c: In function 'gmx_mtxio_write': ../../../src/gmxlib/mtxio.c:90:13: warning: variable 'xd' set but not used [-Wunused-but-set-variable] XDR * xd; ^~ ../../../src/gmxlib/mtxio.c: In function 'gmx_mtxio_read': ../../../src/gmxlib/mtxio.c:164:13: warning: variable 'xd' set but not used [-Wunused-but-set-variable] XDR * xd; ^~ In file included from ../../../src/gmxlib/mtxio.c:48: At top level: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o mtop_util.lo ../../../src/gmxlib/mtop_util.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/mtop_util.c -fPIC -DPIC -o .libs/mtop_util.o ../../../src/gmxlib/mtop_util.c: In function 'gmx_mtop_atomnr_to_molblock_ind': ../../../src/gmxlib/mtop_util.c:105:14: warning: unused variable 'atoms' [-Wunused-variable] t_atoms *atoms; ^~~~~ ../../../src/gmxlib/mtop_util.c: In function 'gmx_mtop_atominfo_global': ../../../src/gmxlib/mtop_util.c:132:21: warning: unused variable 'molb' [-Wunused-variable] gmx_molblock_t *molb; ^~~~ ../../../src/gmxlib/mtop_util.c: In function 'gmx_mtop_ilistloop_all_next': ../../../src/gmxlib/mtop_util.c:384:21: warning: unused variable 'molb' [-Wunused-variable] gmx_molblock_t *molb; ^~~~ ../../../src/gmxlib/mtop_util.c: In function 'gmx_mtop_global_cgs': ../../../src/gmxlib/mtop_util.c:438:14: warning: unused variable 'atoms' [-Wunused-variable] t_atoms *atoms; ^~~~~ ../../../src/gmxlib/mtop_util.c: In function 'gen_local_top': ../../../src/gmxlib/mtop_util.c:669:31: warning: unused variable 'mt' [-Wunused-variable] int mb,srcnr,destnr,ftype,mt,natoms,nposre_old; ^~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o network.lo ../../../src/gmxlib/network.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/network.c -fPIC -DPIC -o .libs/network.o ../../../src/gmxlib/network.c: In function 'gmx_setup': ../../../src/gmxlib/network.c:75:12: warning: unused variable 'flag' [-Wunused-variable] int i,flag; ^~~~ ../../../src/gmxlib/network.c:75:10: warning: unused variable 'i' [-Wunused-variable] int i,flag; ^ ../../../src/gmxlib/network.c:73:10: warning: unused variable 'buf' [-Wunused-variable] char buf[256]; ^~~ In file included from ../../../include/statutil.h:51, from ../../../src/gmxlib/network.c:46: At top level: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/gmxlib/network.c:45: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o matio.lo ../../../src/gmxlib/matio.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/matio.c -fPIC -DPIC -o .libs/matio.o ../../../src/gmxlib/matio.c: In function 'write_xpm_map_split': ../../../src/gmxlib/matio.c:636:16: warning: unused variable 'fac' [-Wunused-variable] real r,g,b,fac; ^~~ ../../../src/gmxlib/matio.c:636:14: warning: unused variable 'b' [-Wunused-variable] real r,g,b,fac; ^ ../../../src/gmxlib/matio.c:636:12: warning: unused variable 'g' [-Wunused-variable] real r,g,b,fac; ^ ../../../src/gmxlib/matio.c:636:10: warning: unused variable 'r' [-Wunused-variable] real r,g,b,fac; ^ ../../../src/gmxlib/matio.c:635:10: warning: unused variable 'i' [-Wunused-variable] int i,ntot; ^ In file included from ../../../src/gmxlib/matio.c:50: At top level: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/gmxlib/matio.c:48: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o mshift.lo ../../../src/gmxlib/mshift.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/mshift.c -fPIC -DPIC -o .libs/mshift.o ../../../src/gmxlib/mshift.c: In function 'compact_graph': ../../../src/gmxlib/mshift.c:243:12: warning: unused variable 'e' [-Wunused-variable] atom_id *e; ^ ../../../src/gmxlib/mshift.c:242:9: warning: unused variable 'j' [-Wunused-variable] int i,j,n,max_nedge; ^ ../../../src/gmxlib/mshift.c: In function 'mk_graph_ilist': ../../../src/gmxlib/mshift.c:307:13: warning: variable 'nbtot' set but not used [-Wunused-but-set-variable] int i,nbtot; ^~~~~ In file included from ../../../src/gmxlib/mshift.c:46: At top level: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/gmxlib/mshift.c:44: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/gmxlib/mshift.c:44: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o mvdata.lo ../../../src/gmxlib/mvdata.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/mvdata.c -fPIC -DPIC -o .libs/mvdata.o ../../../src/gmxlib/mvdata.c: In function 'bc_atoms': ../../../src/gmxlib/mvdata.c:147:7: warning: unused variable 'dummy' [-Wunused-variable] int dummy; ^~~~~ ../../../src/gmxlib/mvdata.c: In function 'bc_groups': ../../../src/gmxlib/mvdata.c:162:7: warning: unused variable 'dummy' [-Wunused-variable] int dummy; ^~~~~ ../../../src/gmxlib/mvdata.c: In function 'bc_ffparams': ../../../src/gmxlib/mvdata.c:290:7: warning: unused variable 'i' [-Wunused-variable] int i; ^ ../../../src/gmxlib/mvdata.c: In function 'bc_molblock': ../../../src/gmxlib/mvdata.c:427:8: warning: unused variable 'bAlloc' [-Wunused-variable] bool bAlloc=TRUE; ^~~~~~ At top level: ../../../src/gmxlib/mvdata.c:275:13: warning: 'bc_idef' defined but not used [-Wunused-function] static void bc_idef(const t_commrec *cr,t_idef *idef) ^~~~~~~ In file included from ../../../src/gmxlib/mvdata.c:50: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/gmxlib/mvdata.c:50: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nrama.lo ../../../src/gmxlib/nrama.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/nrama.c -fPIC -DPIC -o .libs/nrama.o ../../../src/gmxlib/nrama.c: In function 'get_dih2': ../../../src/gmxlib/nrama.c:179:11: warning: unused variable 'found' [-Wunused-variable] int found,**ff,thisff[NPP]; ^~~~~ ../../../src/gmxlib/nrama.c: In function 'init_rama': ../../../src/gmxlib/nrama.c:307:10: warning: unused variable 'ePBC' [-Wunused-variable] int ePBC; ^~~~ At top level: ../../../src/gmxlib/nrama.c:176:13: warning: 'get_dih2' defined but not used [-Wunused-function] static void get_dih2(t_xrama *xr,t_functype functype[], ^~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../include/nrama.h:45, from ../../../src/gmxlib/nrama.c:49: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ ../../../src/gmxlib/nrama.c: In function 'init_rama': ../../../src/gmxlib/nrama.c:125:21: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(buf,"%s-%d",*atoms->resname[atoms->atom[ff[1]].resnr], ^ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../src/gmxlib/nrama.c:41: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 3 or more bytes (assuming 13) into a destination of size 12 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nrjac.lo ../../../src/gmxlib/nrjac.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/nrjac.c -fPIC -DPIC -o .libs/nrjac.o In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/gmxlib/nrjac.c:44: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nrnb.lo ../../../src/gmxlib/nrnb.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/gmxlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/gmxlib/nrnb.c -fPIC -DPIC -o .libs/nrnb.o ../../../src/gmxlib/nrnb.c: In function 'pr_load': ../../../src/gmxlib/nrnb.c:473:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(j=0; (j 0)?"d":"",'X'+m); ^ In file included from /usr/include/stdio.h:862, from ../../../src/mdlib/pull.c:42: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 4 and 14 bytes into a destination of size 10 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o stat.lo ../../../src/mdlib/stat.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/stat.c -fPIC -DPIC -o .libs/stat.o In file included from ../../../include/statutil.h:51, from ../../../src/mdlib/stat.c:63: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/mdlib/stat.c:53: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../src/mdlib/stat.c:49: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/mdlib/stat.c:49: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o minimize.lo ../../../src/mdlib/minimize.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/minimize.c -fPIC -DPIC -o .libs/minimize.o ../../../src/mdlib/minimize.c: In function 'get_f_norm_max': ../../../src/mdlib/minimize.c:153:14: warning: unused variable 'fmax2_0' [-Wunused-variable] real fmax2,fmax2_0,fam; ^~~~~~~ ../../../src/mdlib/minimize.c: In function 'evaluate_energy': ../../../src/mdlib/minimize.c:573:12: warning: unused variable 'state' [-Wunused-variable] t_state *state; ^~~~~ ../../../src/mdlib/minimize.c: In function 'do_cg': ../../../src/mdlib/minimize.c:813:10: warning: unused variable 'terminate' [-Wunused-variable] real terminate=0; ^~~~~~~~~ ../../../src/mdlib/minimize.c:798:26: warning: unused variable 'sum' [-Wunused-variable] double gpa,gpb,gpc,tmp,sum[2],minstep; ^~~ ../../../src/mdlib/minimize.c:797:28: warning: unused variable 'sfm' [-Wunused-variable] rvec *f_global,*p,*sf,*sfm; ^~~ ../../../src/mdlib/minimize.c: In function 'do_lbfgs': ../../../src/mdlib/minimize.c:1329:10: warning: unused variable 'terminate' [-Wunused-variable] real terminate; ^~~~~~~~~ ../../../src/mdlib/minimize.c:1320:20: warning: variable 'first' set but not used [-Wunused-but-set-variable] bool converged,first; ^~~~~ ../../../src/mdlib/minimize.c: In function 'do_steep': ../../../src/mdlib/minimize.c:1957:10: warning: unused variable 'terminate' [-Wunused-variable] real terminate=0; ^~~~~~~~~ ../../../src/mdlib/minimize.c:1946:16: warning: unused variable 'dvdlambda' [-Wunused-variable] real ustep,dvdlambda,fnormn; ^~~~~~~~~ ../../../src/mdlib/minimize.c:1945:19: warning: unused variable 'constepsize' [-Wunused-variable] real stepsize,constepsize; ^~~~~~~~~~~ ../../../src/mdlib/minimize.c: In function 'do_nm': ../../../src/mdlib/minimize.c:2163:22: warning: unused variable 'fmax' [-Wunused-variable] real fnorm,fmax; ^~~~ ../../../src/mdlib/minimize.c:2163:16: warning: unused variable 'fnorm' [-Wunused-variable] real fnorm,fmax; ^~~~~ ../../../src/mdlib/minimize.c:2151:16: warning: unused variable 'nfmax' [-Wunused-variable] int nfmax,count; ^~~~~ ../../../src/mdlib/minimize.c:2149:16: warning: unused variable 'bNS' [-Wunused-variable] bool bNS; ^~~ ../../../src/mdlib/minimize.c:2148:18: warning: variable 'lambda' set but not used [-Wunused-but-set-variable] real t,lambda,t0,lam0; ^~~~~~ ../../../src/mdlib/minimize.c: In function 'do_tpi': ../../../src/mdlib/minimize.c:2419:18: warning: unused variable 'end' [-Wunused-variable] int i,start,end; ^~~ ../../../src/mdlib/minimize.c:2419:12: warning: unused variable 'start' [-Wunused-variable] int i,start,end; ^~~~~ ../../../src/mdlib/minimize.c:2404:15: warning: unused variable 'TPI' [-Wunused-variable] const char *TPI="Test Particle Insertion"; ^~~ At top level: ../../../src/mdlib/minimize.c:515:13: warning: 'do_x_sub' defined but not used [-Wunused-function] static void do_x_sub(t_commrec *cr,int n,rvec *x1,rvec *x2,real a,rvec *f) ^~~~~~~~ ../../../src/mdlib/minimize.c:493:13: warning: 'do_x_step' defined but not used [-Wunused-function] static void do_x_step(t_commrec *cr,int n,rvec *x1,real a,rvec *f,rvec *x2) ^~~~~~~~~ In file included from ../../../include/pme.h:46, from ../../../src/mdlib/minimize.c:83: ../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function] static t_complex cdiv(t_complex teller,t_complex noemer) ^~~~ ../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function] static t_complex csub(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function] static t_complex cadd(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function] static t_complex rcexp(real r) ^~~~~ ../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable] static t_complex cnul = { 0.0, 0.0 }; ^~~~ In file included from ../../../include/statutil.h:51, from ../../../src/mdlib/minimize.c:63: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../include/pull.h:44, from ../../../include/update.h:49, from ../../../src/mdlib/minimize.c:59: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../include/pull.h:44, from ../../../include/update.h:49, from ../../../src/mdlib/minimize.c:59: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/mdlib/minimize.c:47: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o tgroup.lo ../../../src/mdlib/tgroup.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/tgroup.c -fPIC -DPIC -o .libs/tgroup.o ../../../src/mdlib/tgroup.c: In function 'init_grptcstat': ../../../src/mdlib/tgroup.c:57:9: warning: unused variable 'j' [-Wunused-variable] int i,j; ^ At top level: ../../../src/mdlib/tgroup.c:141:13: warning: 'accumulate_ekin' defined but not used [-Wunused-function] static void accumulate_ekin(t_commrec *cr,t_grpopts *opts, ^~~~~~~~~~~~~~~ In file included from ../../../include/update.h:48, from ../../../src/mdlib/tgroup.c:51: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../src/mdlib/tgroup.c:48: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/mdlib/tgroup.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o shellfc.lo ../../../src/mdlib/shellfc.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/shellfc.c -fPIC -DPIC -o .libs/shellfc.o ../../../src/mdlib/shellfc.c: In function 'predict_shells': ../../../src/mdlib/shellfc.c:115:18: warning: unused variable 'dt_3' [-Wunused-variable] real dt_1,dt_2,dt_3,fudge,tm,m1,m2,m3; ^~~~ ../../../src/mdlib/shellfc.c:115:13: warning: unused variable 'dt_2' [-Wunused-variable] real dt_1,dt_2,dt_3,fudge,tm,m1,m2,m3; ^~~~ ../../../src/mdlib/shellfc.c: In function 'init_shell_flexcon': ../../../src/mdlib/shellfc.c:197:32: warning: unused variable 'mt' [-Wunused-variable] int i,j,nmol,type,mb,mt,a_offset,cg,mol,ftype,nra; ^~ ../../../src/mdlib/shellfc.c:197:19: warning: unused variable 'nmol' [-Wunused-variable] int i,j,nmol,type,mb,mt,a_offset,cg,mol,ftype,nra; ^~~~ ../../../src/mdlib/shellfc.c: In function 'init_adir': ../../../src/mdlib/shellfc.c:694:12: warning: unused variable 'dx' [-Wunused-variable] rvec p,dx; ^~ ../../../src/mdlib/shellfc.c:694:10: warning: unused variable 'p' [-Wunused-variable] rvec p,dx; ^ ../../../src/mdlib/shellfc.c:691:13: warning: unused variable 'scale' [-Wunused-variable] real dt,scale; ^~~~~ ../../../src/mdlib/shellfc.c:690:16: warning: unused variable 'gt' [-Wunused-variable] int gf,ga,gt; ^~ ../../../src/mdlib/shellfc.c:690:13: warning: unused variable 'ga' [-Wunused-variable] int gf,ga,gt; ^~ ../../../src/mdlib/shellfc.c:690:10: warning: unused variable 'gf' [-Wunused-variable] int gf,ga,gt; ^~ ../../../src/mdlib/shellfc.c: In function 'relax_shell_flexcon': ../../../src/mdlib/shellfc.c:776:19: warning: unused variable 'g' [-Wunused-variable] int nflexcon,g,number_steps,d,Min=0,count=0; ^ ../../../src/mdlib/shellfc.c:772:10: warning: unused variable 'cbuf' [-Wunused-variable] char cbuf[56]; ^~~~ ../../../src/mdlib/shellfc.c:771:19: warning: unused variable 'xiS' [-Wunused-variable] real ftol,xiH,xiS,dum=0; ^~~ ../../../src/mdlib/shellfc.c:771:15: warning: unused variable 'xiH' [-Wunused-variable] real ftol,xiH,xiS,dum=0; ^~~ ../../../src/mdlib/shellfc.c:769:10: warning: unused variable 'dx' [-Wunused-variable] rvec dx; ^~ In file included from ../../../src/mdlib/shellfc.c:55: At top level: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/mdrun.h:50, from ../../../src/mdlib/shellfc.c:45: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../src/mdlib/shellfc.c:43: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/mdlib/shellfc.c:43: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o tables.lo ../../../src/mdlib/tables.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/tables.c -fPIC -DPIC -o .libs/tables.o ../../../src/mdlib/tables.c: In function 'done_tabledata': ../../../src/mdlib/tables.c:470:7: warning: unused variable 'i' [-Wunused-variable] int i; ^ ../../../src/mdlib/tables.c: In function 'make_tables': ../../../src/mdlib/tables.c:835:17: warning: unused variable 'j' [-Wunused-variable] int i,j,k,nx,nx0,tabsel[etiNR]; ^ ../../../src/mdlib/tables.c: In function 'make_bonded_table': ../../../src/mdlib/tables.c:950:10: warning: variable 'start' set but not used [-Wunused-but-set-variable] double start; ^~~~~ At top level: ../../../src/mdlib/tables.c:155:13: warning: 'splint' defined but not used [-Wunused-function] static void splint(real xa[],real ya[],real y2a[], ^~~~~~ In file included from ../../../src/mdlib/tables.c:51: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../src/mdlib/tables.c:47: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/mdlib/tables.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sim_util.lo ../../../src/mdlib/sim_util.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/sim_util.c -fPIC -DPIC -o .libs/sim_util.o ../../../src/mdlib/sim_util.c: In function 'calc_virial': ../../../src/mdlib/sim_util.c:250:10: warning: unused variable 'virtest' [-Wunused-variable] tensor virtest; ^~~~~~~ ../../../src/mdlib/sim_util.c:249:9: warning: unused variable 'j' [-Wunused-variable] int i,j; ^ ../../../src/mdlib/sim_util.c: In function 'do_force': ../../../src/mdlib/sim_util.c:348:15: warning: unused variable 'box_size' [-Wunused-variable] static rvec box_size; ^~~~~~~~ ../../../src/mdlib/sim_util.c: In function 'calc_enervirdiff': ../../../src/mdlib/sim_util.c:823:13: warning: variable 'r1' set but not used [-Wunused-but-set-variable] double r0,r1,r,rc3,rc9,ea,eb,ec,pa,pb,pc,pd; ^~ ../../../src/mdlib/sim_util.c: In function 'finish_run': ../../../src/mdlib/sim_util.c:1134:14: warning: unused variable 'status' [-Wunused-variable] MPI_Status status; ^~~~~~ ../../../src/mdlib/sim_util.c:1133:10: warning: unused variable 'nrnb_buf' [-Wunused-variable] double nrnb_buf[4]; ^~~~~~~~ ../../../src/mdlib/sim_util.c:1132:10: warning: unused variable 'sender' [-Wunused-variable] int sender; ^~~~~~ ../../../src/mdlib/sim_util.c: In function 'init_md': ../../../src/mdlib/sim_util.c:1222:13: warning: unused variable 'mod' [-Wunused-variable] real tmpt,mod; ^~~ ../../../src/mdlib/sim_util.c:1222:8: warning: unused variable 'tmpt' [-Wunused-variable] real tmpt,mod; ^~~~ ../../../src/mdlib/sim_util.c:1221:12: warning: unused variable 'n' [-Wunused-variable] int i,j,n; ^ ../../../src/mdlib/sim_util.c:1221:10: warning: unused variable 'j' [-Wunused-variable] int i,j,n; ^ At top level: ../../../src/mdlib/sim_util.c:348:15: warning: 'box_size' defined but not used [-Wunused-variable] static rvec box_size; ^~~~~~~~ In file included from ../../../src/mdlib/sim_util.c:78: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/pme.h:46, from ../../../src/mdlib/sim_util.c:68: ../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function] static t_complex cdiv(t_complex teller,t_complex noemer) ^~~~ ../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function] static t_complex csub(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function] static t_complex cadd(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function] static t_complex rcexp(real r) ^~~~~ ../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable] static t_complex cnul = { 0.0, 0.0 }; ^~~~ In file included from ../../../src/mdlib/sim_util.c:57: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/mdlib/sim_util.c:57: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o wall.lo ../../../src/mdlib/wall.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/wall.c -fPIC -DPIC -o .libs/wall.o ../../../src/mdlib/wall.c: In function 'do_walls': ../../../src/mdlib/wall.c:107:47: warning: unused variable 'Heps' [-Wunused-variable] real tabscale,*VFtab,rt,eps,eps2,Yt,Ft,Geps,Heps,Heps2,Fp,VV,FF; ^~~~ ../../../src/mdlib/wall.c:103:50: warning: variable 'Fwall' set but not used [-Wunused-but-set-variable] real *nbfp,lamfac,fac_d[2],fac_r[2],Cd,Cr,Vtot,Fwall[2]; ^~~~~ In file included from ../../../src/mdlib/wall.c:48: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/mdlib/wall.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/mdlib/wall.c:45: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o vcm.lo ../../../src/mdlib/vcm.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/vcm.c -fPIC -DPIC -o .libs/vcm.o ../../../src/mdlib/vcm.c: In function 'calc_vcm_grp': ../../../src/mdlib/vcm.c:122:28: warning: unused variable 'zz' [-Wunused-variable] real m0,xx,xy,xz,yy,yz,zz; ^~ ../../../src/mdlib/vcm.c:122:25: warning: unused variable 'yz' [-Wunused-variable] real m0,xx,xy,xz,yy,yz,zz; ^~ ../../../src/mdlib/vcm.c:122:22: warning: unused variable 'yy' [-Wunused-variable] real m0,xx,xy,xz,yy,yz,zz; ^~ ../../../src/mdlib/vcm.c:122:19: warning: unused variable 'xz' [-Wunused-variable] real m0,xx,xy,xz,yy,yz,zz; ^~ ../../../src/mdlib/vcm.c:122:16: warning: unused variable 'xy' [-Wunused-variable] real m0,xx,xy,xz,yy,yz,zz; ^~ ../../../src/mdlib/vcm.c:122:13: warning: unused variable 'xx' [-Wunused-variable] real m0,xx,xy,xz,yy,yz,zz; ^~ ../../../src/mdlib/vcm.c: In function 'do_stopcm_grp': ../../../src/mdlib/vcm.c:171:11: warning: unused variable 'tm_1' [-Wunused-variable] real tm,tm_1; ^~~~ ../../../src/mdlib/vcm.c:171:8: warning: unused variable 'tm' [-Wunused-variable] real tm,tm_1; ^~ ../../../src/mdlib/vcm.c:170:12: warning: unused variable 'm' [-Wunused-variable] int i,g,m; ^ ../../../src/mdlib/vcm.c: In function 'check_cm_grp': ../../../src/mdlib/vcm.c:250:14: warning: unused variable 'Tcm' [-Wunused-variable] tensor Icm,Tcm; ^~~ In file included from ../../../src/mdlib/vcm.c:43: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/mdlib/vcm.c:43: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o wnblist.lo ../../../src/mdlib/wnblist.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/wnblist.c -fPIC -DPIC -o .libs/wnblist.o ../../../src/mdlib/wnblist.c: In function 'read_nblist': ../../../src/mdlib/wnblist.c:135:27: warning: unused variable 'icmp' [-Wunused-variable] int i,ii,j,nnbl,full,icmp,nri,isolv; ^~~~ ../../../src/mdlib/wnblist.c:135:22: warning: unused variable 'full' [-Wunused-variable] int i,ii,j,nnbl,full,icmp,nri,isolv; ^~~~ ../../../src/mdlib/wnblist.c:135:17: warning: unused variable 'nnbl' [-Wunused-variable] int i,ii,j,nnbl,full,icmp,nri,isolv; ^~~~ ../../../src/mdlib/wnblist.c:134:26: warning: unused variable 'b2' [-Wunused-variable] char buf[256],b1[32],b2[32],solv[256],il_code[256]; ^~ ../../../src/mdlib/wnblist.c:134:19: warning: unused variable 'b1' [-Wunused-variable] char buf[256],b1[32],b2[32],solv[256],il_code[256]; ^~ ../../../src/mdlib/wnblist.c:133:10: warning: unused variable 'bNL' [-Wunused-variable] bool bNL; ^~~ In file included from ../../../src/mdlib/wnblist.c:44: At top level: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o update.lo ../../../src/mdlib/update.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/update.c -fPIC -DPIC -o .libs/update.o ../../../src/mdlib/update.c: In function 'update': ../../../src/mdlib/update.c:771:39: warning: unused variable 'g' [-Wunused-variable] int start,homenr,i,n,m,g; ^ ../../../src/mdlib/update.c:770:20: warning: variable 'dt_1' set but not used [-Wunused-but-set-variable] real dt_1; ^~~~ In file included from ../../../src/mdlib/update.c:62: At top level: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/update.h:48, from ../../../src/mdlib/update.c:53: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../src/mdlib/update.c:50: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/mdlib/update.c:50: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_fft.lo ../../../src/mdlib/gmx_fft.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/gmx_fft.c -fPIC -DPIC -o .libs/gmx_fft.o In file included from ../../../src/mdlib/gmx_fft.c:30: ../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function] static t_complex cdiv(t_complex teller,t_complex noemer) ^~~~ ../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function] static t_complex csub(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function] static t_complex cadd(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function] static t_complex rcexp(real r) ^~~~~ ../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable] static t_complex cnul = { 0.0, 0.0 }; ^~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o csettle.lo ../../../src/mdlib/csettle.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/csettle.c -fPIC -DPIC -o .libs/csettle.o ../../../src/mdlib/csettle.c: In function 'xshake': ../../../src/mdlib/csettle.c:183:39: warning: unused variable 'conv' [-Wunused-variable] int i,ll,ii,jj,l3,ix,iy,iz,jx,jy,jz,conv; ^~~~ ../../../src/mdlib/csettle.c: In function 'csettle': ../../../src/mdlib/csettle.c:298:10: warning: unused variable 'shakeret' [-Wunused-variable] int i, shakeret, ow1, hw2, hw3; ^~~~~~~~ In file included from ../../../src/mdlib/csettle.c:42: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/mdlib/csettle.c:42: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_parallel_3dfft.lo ../../../src/mdlib/gmx_parallel_3dfft.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/gmx_parallel_3dfft.c -fPIC -DPIC -o .libs/gmx_parallel_3dfft.o ../../../src/mdlib/gmx_parallel_3dfft.c: In function 'gmx_parallel_3dfft': ../../../src/mdlib/gmx_parallel_3dfft.c:283:22: warning: unused variable 'k' [-Wunused-variable] int i,j,k; ^ ../../../src/mdlib/gmx_parallel_3dfft.c: In function 'gmx_parallel_3dfft_complex2real': ../../../src/mdlib/gmx_parallel_3dfft.c:484:18: warning: variable 'cdata' set but not used [-Wunused-but-set-variable] t_complex * cdata; ^~~~~ ../../../src/mdlib/gmx_parallel_3dfft.c:483:18: warning: variable 'work' set but not used [-Wunused-but-set-variable] t_complex * work; ^~~~ ../../../src/mdlib/gmx_parallel_3dfft.c:480:24: warning: variable 'nzc' set but not used [-Wunused-but-set-variable] int nx,ny,nzc; ^~~ ../../../src/mdlib/gmx_parallel_3dfft.c:480:21: warning: variable 'ny' set but not used [-Wunused-but-set-variable] int nx,ny,nzc; ^~ ../../../src/mdlib/gmx_parallel_3dfft.c:480:18: warning: variable 'nx' set but not used [-Wunused-but-set-variable] int nx,ny,nzc; ^~ ../../../src/mdlib/gmx_parallel_3dfft.c:479:22: warning: unused variable 'k' [-Wunused-variable] int i,j,k; ^ ../../../src/mdlib/gmx_parallel_3dfft.c:479:20: warning: unused variable 'j' [-Wunused-variable] int i,j,k; ^ ../../../src/mdlib/gmx_parallel_3dfft.c:479:18: warning: unused variable 'i' [-Wunused-variable] int i,j,k; ^ In file included from ../../../include/gmx_parallel_3dfft.h:30, from ../../../src/mdlib/gmx_parallel_3dfft.c:32: At top level: ../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function] static t_complex cdiv(t_complex teller,t_complex noemer) ^~~~ ../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function] static t_complex csub(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function] static t_complex cadd(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function] static t_complex rcexp(real r) ^~~~~ ../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable] static t_complex cnul = { 0.0, 0.0 }; ^~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_wallcycle.lo ../../../src/mdlib/gmx_wallcycle.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/gmx_wallcycle.c -fPIC -DPIC -o .libs/gmx_wallcycle.o make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o qmmm.lo ../../../src/mdlib/qmmm.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/qmmm.c -fPIC -DPIC -o .libs/qmmm.o ../../../src/mdlib/qmmm.c: In function 'update_QMMMrec': ../../../src/mdlib/qmmm.c:725:6: warning: unused variable 'MMatoms' [-Wunused-variable] *MMatoms; ^~~~~~~ ../../../src/mdlib/qmmm.c:721:17: warning: variable 'QMMMlist_lr' set but not used [-Wunused-but-set-variable] QMMMlist_sr,QMMMlist_lr; ^~~~~~~~~~~ At top level: ../../../src/mdlib/qmmm.c:131:12: warning: 'int_comp' defined but not used [-Wunused-function] static int int_comp(const void *a,const void *b){ ^~~~~~~~ In file included from ../../../src/mdlib/qmmm.c:60: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/mdlib/qmmm.c:49: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../src/mdlib/qmmm.c:48: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/mdlib/qmmm.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o domdec.lo ../../../src/mdlib/domdec.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/domdec.c -fPIC -DPIC -o .libs/domdec.o ../../../src/mdlib/domdec.c: In function 'dd_move_cellx': ../../../src/mdlib/domdec.c:785:41: warning: unused variable 'k' [-Wunused-variable] int d,d1,dim,dim1,pos,buf_size,i,j,k,p,npulse; ^ ../../../src/mdlib/domdec.c:785:19: warning: unused variable 'dim1' [-Wunused-variable] int d,d1,dim,dim1,pos,buf_size,i,j,k,p,npulse; ^~~~ ../../../src/mdlib/domdec.c: In function 'dd_collect_vec': ../../../src/mdlib/domdec.c:1212:11: warning: unused variable 'buf' [-Wunused-variable] rvec *buf=NULL; ^~~ ../../../src/mdlib/domdec.c:1211:18: warning: unused variable 'nalloc' [-Wunused-variable] int n,i,c,a,nalloc=0; ^~~~~~ ../../../src/mdlib/domdec.c:1211:16: warning: unused variable 'a' [-Wunused-variable] int n,i,c,a,nalloc=0; ^ ../../../src/mdlib/domdec.c:1211:14: warning: unused variable 'c' [-Wunused-variable] int n,i,c,a,nalloc=0; ^ ../../../src/mdlib/domdec.c:1211:12: warning: unused variable 'i' [-Wunused-variable] int n,i,c,a,nalloc=0; ^ ../../../src/mdlib/domdec.c:1211:10: warning: unused variable 'n' [-Wunused-variable] int n,i,c,a,nalloc=0; ^ ../../../src/mdlib/domdec.c:1210:26: warning: unused variable 'ma' [-Wunused-variable] gmx_domdec_master_t *ma; ^~ ../../../src/mdlib/domdec.c: In function 'dd_distribute_vec_scatterv': ../../../src/mdlib/domdec.c:1427:18: warning: unused variable 'nalloc' [-Wunused-variable] int n,i,c,a,nalloc=0; ^~~~~~ ../../../src/mdlib/domdec.c: In function 'gmx_ddcoord2pmeindex': ../../../src/mdlib/domdec.c:1805:28: warning: unused variable 'nc' [-Wunused-variable] ivec coords,coords_pme,nc; ^~ ../../../src/mdlib/domdec.c:1805:17: warning: unused variable 'coords_pme' [-Wunused-variable] ivec coords,coords_pme,nc; ^~~~~~~~~~ ../../../src/mdlib/domdec.c: In function 'make_dd_indices': ../../../src/mdlib/domdec.c:2107:11: warning: variable 'bLocalCG' set but not used [-Wunused-but-set-variable] char *bLocalCG; ^~~~~~~~ ../../../src/mdlib/domdec.c: In function 'check_bLocalCG': ../../../src/mdlib/domdec.c:2162:9: warning: unused variable 'ncg' [-Wunused-variable] int ncg,i,ngl,nerr; ^~~ ../../../src/mdlib/domdec.c: In function 'dd_redistribute_cg': ../../../src/mdlib/domdec.c:3706:49: warning: unused variable 'cell_d' [-Wunused-variable] int c,i,cg,k,k0,k1,d,dim,dim2,dir,d2,d3,d4,cell_d; ^~~~~~ ../../../src/mdlib/domdec.c:3706:46: warning: unused variable 'd4' [-Wunused-variable] int c,i,cg,k,k0,k1,d,dim,dim2,dir,d2,d3,d4,cell_d; ^~ ../../../src/mdlib/domdec.c: In function 'get_load_distribution': ../../../src/mdlib/domdec.c:4326:16: warning: unused variable 'cid' [-Wunused-variable] int d,dim,cid,i,pos; ^~~ ../../../src/mdlib/domdec.c: In function 'setup_dd_grid': ../../../src/mdlib/domdec.c:4781:10: warning: unused variable 'bZYX' [-Wunused-variable] bool bZYX; ^~~~ ../../../src/mdlib/domdec.c: In function 'check_dlb_support': ../../../src/mdlib/domdec.c:5598:9: warning: label 'edlbYES' defined but not used [-Wunused-label] edlbYES: ^~~~~~~ ../../../src/mdlib/domdec.c:5594:9: warning: label 'edlbAUTO' defined but not used [-Wunused-label] edlbAUTO: ^~~~~~~~ ../../../src/mdlib/domdec.c:5592:9: warning: label 'edlbNO' defined but not used [-Wunused-label] edlbNO: ^~~~~~ ../../../src/mdlib/domdec.c:5553:19: warning: unused variable 'dd' [-Wunused-variable] gmx_domdec_t *dd; ^~ ../../../src/mdlib/domdec.c: In function 'init_domain_decomposition': ../../../src/mdlib/domdec.c:5652:14: warning: unused variable 'j' [-Wunused-variable] int d,i,j; ^ ../../../src/mdlib/domdec.c:5652:12: warning: unused variable 'i' [-Wunused-variable] int d,i,j; ^ ../../../src/mdlib/domdec.c:5652:10: warning: unused variable 'd' [-Wunused-variable] int d,i,j; ^ ../../../src/mdlib/domdec.c: In function 'turn_on_dlb': ../../../src/mdlib/domdec.c:6010:10: warning: unused variable 'buf' [-Wunused-variable] char buf[STRLEN]; ^~~ ../../../src/mdlib/domdec.c: In function 'dd_init_bondeds': ../../../src/mdlib/domdec.c:6086:10: warning: unused variable 'd' [-Wunused-variable] int d; ^ ../../../src/mdlib/domdec.c:6085:10: warning: unused variable 'bBondComm' [-Wunused-variable] bool bBondComm; ^~~~~~~~~ ../../../src/mdlib/domdec.c: In function 'setup_dd_communication': ../../../src/mdlib/domdec.c:6486:64: warning: unused variable 'inv_ncg' [-Wunused-variable] real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh; ^~~~~~~ ../../../src/mdlib/domdec.c:6486:58: warning: unused variable 'r2inc' [-Wunused-variable] real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh; ^~~~~ ../../../src/mdlib/domdec.c:6486:47: warning: unused variable 'r_1' [-Wunused-variable] real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh; ^~~ ../../../src/mdlib/domdec.c:6486:43: warning: unused variable 'r_0' [-Wunused-variable] real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh; ^~~ ../../../src/mdlib/domdec.c:6486:23: warning: unused variable 'r_scomm2' [-Wunused-variable] real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh; ^~~~~~~~ ../../../src/mdlib/domdec.c:6486:10: warning: unused variable 'r_mb' [-Wunused-variable] real r_mb,r_comm2,r_scomm2,r_bcomm2,r,r_0,r_1,r2,rb2,r2inc,inv_ncg,tric_sh; ^~~~ ../../../src/mdlib/domdec.c: In function 'dd_partition_system': ../../../src/mdlib/domdec.c:7481:12: warning: unused variable 'j' [-Wunused-variable] int i,j,n,cg0=0,ncg_home_old=-1; ^ In file included from ../../../include/mdrun.h:50, from ../../../src/mdlib/domdec.c:44: At top level: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../include/pme.h:46, from ../../../src/mdlib/domdec.c:41: ../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function] static t_complex cdiv(t_complex teller,t_complex noemer) ^~~~ ../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function] static t_complex csub(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function] static t_complex cadd(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function] static t_complex rcexp(real r) ^~~~~ ../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable] static t_complex cnul = { 0.0, 0.0 }; ^~~~ In file included from ../../../src/mdlib/domdec.c:31: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/mdlib/domdec.c:31: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_fft_fftw3.lo ../../../src/mdlib/gmx_fft_fftw3.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/gmx_fft_fftw3.c -fPIC -DPIC -o .libs/gmx_fft_fftw3.o In file included from ../../../include/gmx_fft.h:41, from ../../../src/mdlib/gmx_fft_fftw3.c:27: ../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function] static t_complex cdiv(t_complex teller,t_complex noemer) ^~~~ ../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function] static t_complex csub(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function] static t_complex cadd(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function] static t_complex rcexp(real r) ^~~~~ ../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable] static t_complex cnul = { 0.0, 0.0 }; ^~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o qm_gaussian.lo ../../../src/mdlib/qm_gaussian.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/qm_gaussian.c -fPIC -DPIC -o .libs/qm_gaussian.o ../../../src/mdlib/qm_gaussian.c: In function 'init_gaussian': ../../../src/mdlib/qm_gaussian.c:73:6: warning: unused variable 'rffile' [-Wunused-variable] *rffile=NULL,*out=NULL; ^~~~~~ In file included from ../../../src/mdlib/qm_gaussian.c:60: At top level: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/mdlib/qm_gaussian.c:49: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../src/mdlib/qm_gaussian.c:48: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/mdlib/qm_gaussian.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o vsite.lo ../../../src/mdlib/vsite.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/vsite.c -fPIC -DPIC -o .libs/vsite.o ../../../src/mdlib/vsite.c: In function 'constr_vsiten': ../../../src/mdlib/vsite.c:437:8: warning: unused variable 'xs' [-Wunused-variable] rvec xs,x1,dx; ^~ ../../../src/mdlib/vsite.c: In function 'construct_vsites': ../../../src/mdlib/vsite.c:484:25: warning: unused variable 'rtmp' [-Wunused-variable] rvec reftmp,vtmp,rtmp; ^~~~ ../../../src/mdlib/vsite.c:484:20: warning: unused variable 'vtmp' [-Wunused-variable] rvec reftmp,vtmp,rtmp; ^~~~ ../../../src/mdlib/vsite.c:484:13: warning: unused variable 'reftmp' [-Wunused-variable] rvec reftmp,vtmp,rtmp; ^~~~~~ ../../../src/mdlib/vsite.c:478:19: warning: unused variable 'ii' [-Wunused-variable] int i,inc,ii,nra,nr,tp,ftype; ^~ ../../../src/mdlib/vsite.c: In function 'spread_vsite2': ../../../src/mdlib/vsite.c:655:11: warning: unused variable 'b' [-Wunused-variable] real b; ^ ../../../src/mdlib/vsite.c: In function 'spread_vsite3FD': ../../../src/mdlib/vsite.c:770:23: warning: unused variable 'd' [-Wunused-variable] int svi,sji,skj,d; ^ ../../../src/mdlib/vsite.c:767:14: warning: unused variable 'fz' [-Wunused-variable] real fx,fy,fz,c,invl,fproj,a1; ^~ ../../../src/mdlib/vsite.c:767:11: warning: unused variable 'fy' [-Wunused-variable] real fx,fy,fz,c,invl,fproj,a1; ^~ ../../../src/mdlib/vsite.c:767:8: warning: unused variable 'fx' [-Wunused-variable] real fx,fy,fz,c,invl,fproj,a1; ^~ ../../../src/mdlib/vsite.c: In function 'spread_vsite_f': ../../../src/mdlib/vsite.c:1255:19: warning: unused variable 'm' [-Wunused-variable] int i,inc,m,nra,nr,tp,ftype; ^ ../../../src/mdlib/vsite.c: In function 'count_intercg_vsite': ../../../src/mdlib/vsite.c:1409:11: warning: unused variable 'mt' [-Wunused-variable] int mb,mt,ftype,nral,i,cg,a; ^~ ../../../src/mdlib/vsite.c: In function 'get_vsite_pbc': ../../../src/mdlib/vsite.c:1448:38: warning: unused variable 'cg_c' [-Wunused-variable] int ftype,nral,i,j,vsi,vsite,cg_v,cg_c,a,nc3=0; ^~~~ ../../../src/mdlib/vsite.c: In function 'init_vsite': ../../../src/mdlib/vsite.c:1559:13: warning: unused variable 'cg' [-Wunused-variable] int *a2cg,cg; ^~ In file included from ../../../src/mdlib/vsite.c:46: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/mdlib/vsite.c:46: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o clincs.lo ../../../src/mdlib/clincs.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/mdlib -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/mdlib/clincs.c -fPIC -DPIC -o .libs/clincs.o ../../../src/mdlib/clincs.c: In function 'do_lincsp': ../../../src/mdlib/clincs.c:189:54: warning: unused variable 'lam' [-Wunused-variable] real tmp0,tmp1,tmp2,im1,im2,mvb,rlen,len,wfac,lam; ^~~ ../../../src/mdlib/clincs.c:189:49: warning: unused variable 'wfac' [-Wunused-variable] real tmp0,tmp1,tmp2,im1,im2,mvb,rlen,len,wfac,lam; ^~~~ ../../../src/mdlib/clincs.c:189:45: warning: unused variable 'len' [-Wunused-variable] real tmp0,tmp1,tmp2,im1,im2,mvb,rlen,len,wfac,lam; ^~~ ../../../src/mdlib/clincs.c:189:40: warning: unused variable 'rlen' [-Wunused-variable] real tmp0,tmp1,tmp2,im1,im2,mvb,rlen,len,wfac,lam; ^~~~ ../../../src/mdlib/clincs.c: In function 'set_lincs': ../../../src/mdlib/clincs.c:764:14: warning: variable 'bLocal' set but not used [-Wunused-but-set-variable] bool bLocal; ^~~~~~ ../../../src/mdlib/clincs.c: In function 'constrain_lincs': ../../../src/mdlib/clincs.c:1084:25: warning: unused variable 'error' [-Wunused-variable] int i,warn,p_imax,error; ^~~~~ At top level: ../../../src/mdlib/clincs.c:1034:13: warning: 'dump_conf' defined but not used [-Wunused-function] static void dump_conf(gmx_domdec_t *dd,struct gmx_lincsdata *li, ^~~~~~~~~ In file included from ../../../include/mdrun.h:50, from ../../../src/mdlib/clincs.c:50: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../src/mdlib/clincs.c:47: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/mdlib/clincs.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/mdlib/clincs.c:45: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -version-info 5:0:0 -lgslcblas -o libmd_mpi_d.la -rpath /usr/lib64 calcmu.lo calcvir.lo constr.lo coupling.lo domdec.lo domdec_con.lo domdec_network.lo domdec_setup.lo domdec_top.lo ebin.lo edsam.lo ewald.lo fftgrid.lo force.lo ghat.lo init.lo mdatom.lo mdebin.lo minimize.lo mvxvf.lo ns.lo nsgrid.lo perf_est.lo pme.lo pme_pp.lo pppm.lo partdec.lo pull.lo pullutil.lo rf_util.lo shakef.lo sim_util.lo shellfc.lo stat.lo tables.lo tgroup.lo update.lo vcm.lo vsite.lo wall.lo wnblist.lo csettle.lo clincs.lo qmmm.lo gmx_fft.lo gmx_parallel_3dfft.lo gmx_wallcycle.lo qm_gaussian.lo gmx_fft_fftw3.lo ../gmxlib/libgmx_mpi_d.la -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath mpicc -shared .libs/calcmu.o .libs/calcvir.o .libs/constr.o .libs/coupling.o .libs/domdec.o .libs/domdec_con.o .libs/domdec_network.o .libs/domdec_setup.o .libs/domdec_top.o .libs/ebin.o .libs/edsam.o .libs/ewald.o .libs/fftgrid.o .libs/force.o .libs/ghat.o .libs/init.o .libs/mdatom.o .libs/mdebin.o .libs/minimize.o .libs/mvxvf.o .libs/ns.o .libs/nsgrid.o .libs/perf_est.o .libs/pme.o .libs/pme_pp.o .libs/pppm.o .libs/partdec.o .libs/pull.o .libs/pullutil.o .libs/rf_util.o .libs/shakef.o .libs/sim_util.o .libs/shellfc.o .libs/stat.o .libs/tables.o .libs/tgroup.o .libs/update.o .libs/vcm.o .libs/vsite.o .libs/wall.o .libs/wnblist.o .libs/csettle.o .libs/clincs.o .libs/qmmm.o .libs/gmx_fft.o .libs/gmx_parallel_3dfft.o .libs/gmx_wallcycle.o .libs/qm_gaussian.o .libs/gmx_fft_fftw3.o -lgslcblas ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wl,-soname -Wl,libmd_mpi_d.so.5 -o .libs/libmd_mpi_d.so.5.0.0 (cd .libs && rm -f libmd_mpi_d.so.5 && ln -s libmd_mpi_d.so.5.0.0 libmd_mpi_d.so.5) (cd .libs && rm -f libmd_mpi_d.so && ln -s libmd_mpi_d.so.5.0.0 libmd_mpi_d.so) creating libmd_mpi_d.la (cd .libs && rm -f libmd_mpi_d.la && ln -s ../libmd_mpi_d.la libmd_mpi_d.la) make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib' Making all in kernel make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o compute_io.lo ../../../src/kernel/compute_io.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/compute_io.c -fPIC -DPIC -o .libs/compute_io.o ../../../src/kernel/compute_io.c: In function 'compute_io': ../../../src/kernel/compute_io.c:49:53: warning: unused variable 'nfep' [-Wunused-variable] int nstx=0,nstv=0,nstf=0,nste=0,nstlog=0,nstxtc=0,nfep=0; ^~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o add_par.lo ../../../src/kernel/add_par.c mkdir .libs mkdir: cannot create directory '.libs': File exists mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/add_par.c -fPIC -DPIC -o .libs/add_par.o In file included from ../../../src/kernel/hackblock.h:41, from ../../../src/kernel/add_par.c:46: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/kernel/add_par.c:44: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o convparm.lo ../../../src/kernel/convparm.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/convparm.c -fPIC -DPIC -o .libs/convparm.o ../../../src/kernel/convparm.c: In function 'new_interaction_list': ../../../src/kernel/convparm.c:404:7: warning: unused variable 'i' [-Wunused-variable] int i; ^ ../../../src/kernel/convparm.c: In function 'convert_params': ../../../src/kernel/convparm.c:414:12: warning: unused variable 'j' [-Wunused-variable] int i,j,maxtypes,mt; ^ At top level: ../../../src/kernel/convparm.c:402:13: warning: 'new_interaction_list' defined but not used [-Wunused-function] static void new_interaction_list(t_ilist *ilist) ^~~~~~~~~~~~~~~~~~~~ In file included from ../../../src/kernel/topio.h:41, from ../../../src/kernel/convparm.c:48: ../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable] static const char *couple_lam[ecouplamNR+1] = { ^~~~~~~~~~ ../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable] static const char *constraints[eshNR+1] = { ^~~~~~~~~~~ In file included from ../../../src/kernel/readir.h:43, from ../../../src/kernel/topio.h:41, from ../../../src/kernel/convparm.c:48: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/readir.h:42, from ../../../src/kernel/topio.h:41, from ../../../src/kernel/convparm.c:48: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/kernel/convparm.c:44: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/convparm.c:44: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmxcpp.lo ../../../src/kernel/gmxcpp.c mkdir .libs mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/gmxcpp.c -fPIC -DPIC -o .libs/gmxcpp.o ../../../src/kernel/gmxcpp.c: In function 'cpp_close_file': ../../../src/kernel/gmxcpp.c:453:7: warning: unused variable 'i' [-Wunused-variable] int i; ^ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gpp_bond_atomtype.lo ../../../src/kernel/gpp_bond_atomtype.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/gpp_bond_atomtype.c -fPIC -DPIC -o .libs/gpp_bond_atomtype.o make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gpp_atomtype.lo ../../../src/kernel/gpp_atomtype.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/gpp_atomtype.c -fPIC -DPIC -o .libs/gpp_atomtype.o In file included from ../../../src/kernel/topdirs.h:40, from ../../../src/kernel/gpp_atomtype.c:45: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o genhydro.lo ../../../src/kernel/genhydro.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/genhydro.c -fPIC -DPIC -o .libs/genhydro.o In file included from ../../../src/kernel/hackblock.h:42, from ../../../src/kernel/genhydro.h:41, from ../../../src/kernel/genhydro.c:56: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/genhydro.h:40, from ../../../src/kernel/genhydro.c:56: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/kernel/genhydro.c:51: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/kernel/genhydro.c:50: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/genhydro.c:50: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/genhydro.c:46: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o grompp.o ../../../src/kernel/grompp.c ../../../src/kernel/grompp.c: In function 'new_status': ../../../src/kernel/grompp.c:300:3: warning: statement with no effect [-Wunused-value] mbs; ^~~ ../../../src/kernel/grompp.c: In function 'read_posres': ../../../src/kernel/grompp.c:478:10: warning: unused variable 'bFirst' [-Wunused-variable] bool bFirst = TRUE; ^~~~~~ ../../../src/kernel/grompp.c: In function 'gen_posres': ../../../src/kernel/grompp.c:604:9: warning: unused variable 'j' [-Wunused-variable] int i,j; ^ ../../../src/kernel/grompp.c:604:7: warning: unused variable 'i' [-Wunused-variable] int i,j; ^ ../../../src/kernel/grompp.c: In function 'main': ../../../src/kernel/grompp.c:769:16: warning: unused variable 'natoms' [-Wunused-variable] int natoms,nvsite,comb,mt; ^~~~~~ In file included from ../../../src/kernel/hackblock.h:41, from ../../../src/kernel/pdb2top.h:43, from ../../../src/kernel/add_par.h:41, from ../../../src/kernel/grompp.c:74: At top level: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/kernel/grompp.c:60: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/grompp.c:60: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/grompp.c:54: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/kernel/grompp.c:50: ../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable] static const char *couple_lam[ecouplamNR+1] = { ^~~~~~~~~~ ../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable] static const char *constraints[eshNR+1] = { ^~~~~~~~~~~ In file included from ../../../src/kernel/readir.h:43, from ../../../src/kernel/grompp.c:50: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/readir.h:42, from ../../../src/kernel/grompp.c:50: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ ../../../src/kernel/grompp.c: In function 'main': ../../../src/kernel/grompp.c:380:19: warning: '%s' directive writing up to 4095 bytes into a region of size between 4045 and 4055 [-Wformat-overflow=] sprintf(buf,"%d non-matching atom name%s\n" ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../src/kernel/grompp.c:856:14: new_status(fn,opt2fn_null("-pp",NFILE,fnm),opt2fn("-c",NFILE,fnm), ~~ ../../../src/kernel/grompp.c:381:25: note: format string is defined here "atom names from %s will be used\n" ^~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../src/kernel/grompp.c:46: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 89 or more bytes (assuming 4194) into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o h_db.lo ../../../src/kernel/h_db.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/h_db.c -fPIC -DPIC -o .libs/h_db.o ../../../src/kernel/h_db.c: In function 'dump_h_db': ../../../src/kernel/h_db.c:113:10: warning: unused variable 'j' [-Wunused-variable] int i,j,k; ^ In file included from ../../../src/kernel/hackblock.h:42, from ../../../src/kernel/h_db.h:41, from ../../../src/kernel/h_db.c:47: At top level: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/hackblock.h:41, from ../../../src/kernel/h_db.h:41, from ../../../src/kernel/h_db.c:47: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gen_ad.lo ../../../src/kernel/gen_ad.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/gen_ad.c -fPIC -DPIC -o .libs/gen_ad.o ../../../src/kernel/gen_ad.c: In function 'get_impropers': ../../../src/kernel/gen_ad.c:437:25: warning: unused variable 'r' [-Wunused-variable] int nidih,i,j,k,r,start,ninc,nalloc; ^ ../../../src/kernel/gen_ad.c:436:15: warning: unused variable 'hbidih' [-Wunused-variable] t_rbonded *hbidih; ^~~~~~ ../../../src/kernel/gen_ad.c:434:14: warning: unused variable 'a0' [-Wunused-variable] char *a0; ^~ ../../../src/kernel/gen_ad.c: In function 'clean_excls': ../../../src/kernel/gen_ad.c:576:26: warning: unused variable 'n' [-Wunused-variable] int i,j,j1,k,k1,l,l1,m,n,e; ^ ../../../src/kernel/gen_ad.c:576:24: warning: unused variable 'm' [-Wunused-variable] int i,j,j1,k,k1,l,l1,m,n,e; ^ ../../../src/kernel/gen_ad.c: In function 'generate_excls': ../../../src/kernel/gen_ad.c:618:28: warning: unused variable 'e' [-Wunused-variable] int i,j,j1,k,k1,l,l1,m,n,e,N; ^ ../../../src/kernel/gen_ad.c:618:24: warning: unused variable 'm' [-Wunused-variable] int i,j,j1,k,k1,l,l1,m,n,e,N; ^ ../../../src/kernel/gen_ad.c:618:21: warning: unused variable 'l1' [-Wunused-variable] int i,j,j1,k,k1,l,l1,m,n,e,N; ^~ ../../../src/kernel/gen_ad.c:618:19: warning: unused variable 'l' [-Wunused-variable] int i,j,j1,k,k1,l,l1,m,n,e,N; ^ ../../../src/kernel/gen_ad.c:618:16: warning: unused variable 'k1' [-Wunused-variable] int i,j,j1,k,k1,l,l1,m,n,e,N; ^~ ../../../src/kernel/gen_ad.c:618:14: warning: unused variable 'k' [-Wunused-variable] int i,j,j1,k,k1,l,l1,m,n,e,N; ^ ../../../src/kernel/gen_ad.c:618:11: warning: unused variable 'j1' [-Wunused-variable] int i,j,j1,k,k1,l,l1,m,n,e,N; ^~ At top level: ../../../src/kernel/gen_ad.c:327:13: warning: 'dump_param' defined but not used [-Wunused-function] static void dump_param(FILE *fp,char *title,int n,t_param ps[]) ^~~~~~~~~~ ../../../src/kernel/gen_ad.c:289:13: warning: 'ideq' defined but not used [-Wunused-function] static bool ideq(t_param *p1, t_param *p2) ^~~~ ../../../src/kernel/gen_ad.c:114:13: warning: 'aeq' defined but not used [-Wunused-function] static bool aeq(t_param *p1, t_param *p2) ^~~ In file included from ../../../src/kernel/hackblock.h:41, from ../../../src/kernel/resall.h:41, from ../../../src/kernel/gen_ad.c:57: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/kernel/topio.h:41, from ../../../src/kernel/gen_ad.c:51: ../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable] static const char *couple_lam[ecouplamNR+1] = { ^~~~~~~~~~ ../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable] static const char *constraints[eshNR+1] = { ^~~~~~~~~~~ In file included from ../../../src/kernel/readir.h:42, from ../../../src/kernel/topio.h:41, from ../../../src/kernel/gen_ad.c:51: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/kernel/toputil.h:40, from ../../../src/kernel/gen_ad.c:50: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/gen_ad.c:48: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/gen_ad.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o hackblock.lo ../../../src/kernel/hackblock.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/hackblock.c -fPIC -DPIC -o .libs/hackblock.o In file included from ../../../src/kernel/hackblock.c:44: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/hackblock.c:44: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/hackblock.h:42, from ../../../src/kernel/hackblock.c:42: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/hackblock.h:41, from ../../../src/kernel/hackblock.c:42: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o hizzie.lo ../../../src/kernel/hizzie.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/hizzie.c -fPIC -DPIC -o .libs/hizzie.o ../../../src/kernel/hizzie.c: In function 'set_histp': ../../../src/kernel/hizzie.c:195:8: warning: unused variable 'd' [-Wunused-variable] real d; ^ ../../../src/kernel/hizzie.c:192:27: warning: unused variable 'his0' [-Wunused-variable] int i,j,nd,na,aj,hisnr,his0,type=-1; ^~~~ ../../../src/kernel/hizzie.c:192:18: warning: unused variable 'aj' [-Wunused-variable] int i,j,nd,na,aj,hisnr,his0,type=-1; ^~ ../../../src/kernel/hizzie.c:188:15: warning: unused variable 'bHaveH' [-Wunused-variable] bool *hbond,bHaveH=FALSE; ^~~~~~ In file included from ../../../src/kernel/toputil.h:40, from ../../../src/kernel/hizzie.c:48: At top level: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/hizzie.c:46: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/hizzie.c:46: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/hizzie.c:44: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pgutil.lo ../../../src/kernel/pgutil.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/pgutil.c -fPIC -DPIC -o .libs/pgutil.o make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sorting.lo ../../../src/kernel/sorting.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/sorting.c -fPIC -DPIC -o .libs/sorting.o make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o readpull.lo ../../../src/kernel/readpull.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/readpull.c -fPIC -DPIC -o .libs/readpull.o ../../../src/kernel/readpull.c: In function 'read_pullparams': ../../../src/kernel/readpull.c:102:22: warning: unused variable 'nchar' [-Wunused-variable] int ninp,nerror,i,nchar,ndim,nscan,m; ^~~~~ In file included from ../../../src/kernel/readpull.c:54: At top level: ../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable] static const char *couple_lam[ecouplamNR+1] = { ^~~~~~~~~~ ../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable] static const char *constraints[eshNR+1] = { ^~~~~~~~~~~ In file included from ../../../src/kernel/readir.h:43, from ../../../src/kernel/readpull.c:54: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/readpull.c:46: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/readpull.c:46: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/kernel/readpull.c:45: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o resall.lo ../../../src/kernel/resall.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/resall.c -fPIC -DPIC -o .libs/resall.o In file included from ../../../src/kernel/hackblock.h:42, from ../../../src/kernel/resall.h:41, from ../../../src/kernel/resall.c:49: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/hackblock.h:41, from ../../../src/kernel/resall.h:41, from ../../../src/kernel/resall.c:49: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pdb2top.lo ../../../src/kernel/pdb2top.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/pdb2top.c -fPIC -DPIC -o .libs/pdb2top.o ../../../src/kernel/pdb2top.c: In function 'missing_atoms': ../../../src/kernel/pdb2top.c:75:16: warning: unused variable 'bRet' [-Wunused-variable] bool bFound, bRet; ^~~~ In file included from ../../../src/kernel/topio.h:41, from ../../../src/kernel/pdb2top.c:57: At top level: ../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable] static const char *couple_lam[ecouplamNR+1] = { ^~~~~~~~~~ ../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable] static const char *constraints[eshNR+1] = { ^~~~~~~~~~~ In file included from ../../../src/kernel/readir.h:42, from ../../../src/kernel/topio.h:41, from ../../../src/kernel/pdb2top.c:57: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/kernel/hackblock.h:41, from ../../../src/kernel/pdb2top.h:43, from ../../../src/kernel/pdb2top.c:50: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/kernel/pdb2top.h:41, from ../../../src/kernel/pdb2top.c:50: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/pdb2top.c:44: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/kernel/pdb2top.c:43: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/pdb2top.c:43: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ter_db.lo ../../../src/kernel/ter_db.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/ter_db.c -fPIC -DPIC -o .libs/ter_db.o ../../../src/kernel/ter_db.c: In function 'print_ter_db': ../../../src/kernel/ter_db.c:105:20: warning: unused variable 'nname' [-Wunused-variable] char buf[STRLEN],nname[STRLEN]; ^~~~~ ../../../src/kernel/ter_db.c: In function 'filter_ter': ../../../src/kernel/ter_db.c:301:12: warning: unused variable 's2' [-Wunused-variable] char *s,*s2,*c; ^~ ../../../src/kernel/ter_db.c:299:13: warning: unused variable 'len' [-Wunused-variable] int i,j,n,len,none_idx; ^~~ In file included from ../../../src/kernel/hackblock.h:42, from ../../../src/kernel/resall.h:41, from ../../../src/kernel/ter_db.c:45: At top level: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/hackblock.h:41, from ../../../src/kernel/resall.h:41, from ../../../src/kernel/ter_db.c:45: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o specbond.lo ../../../src/kernel/specbond.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/specbond.c -fPIC -DPIC -o .libs/specbond.o In file included from ../../../src/kernel/specbond.c:49: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/specbond.c:49: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/pdb2top.h:41, from ../../../src/kernel/specbond.h:40, from ../../../src/kernel/specbond.c:47: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/specbond.c:43: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ ../../../src/kernel/specbond.c: In function 'mk_specbonds': ../../../src/kernel/specbond.c:236:19: warning: '%d' directive writing between 1 and 11 bytes into a region of size 10 [-Wformat-overflow=] sprintf(buf,"%s%d",*pdba->resname[pdba->atom[sgp[i]].resnr], ^~ ../../../src/kernel/specbond.c:236:16: note: directive argument in the range [-2147483647, 2147483647] sprintf(buf,"%s%d",*pdba->resname[pdba->atom[sgp[i]].resnr], ^~~~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../include/typedefs.h:52, from ../../../src/kernel/specbond.c:42: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 12) into a destination of size 10 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../src/kernel/specbond.c:245:19: warning: '%d' directive writing between 1 and 11 bytes into a region of size 10 [-Wformat-overflow=] sprintf(buf,"%s%d",*pdba->atomname[sgp[i]], sgp[i]+1); ^~ ../../../src/kernel/specbond.c:245:16: note: directive argument in the range [-2147483647, 2147483647] sprintf(buf,"%s%d",*pdba->atomname[sgp[i]], sgp[i]+1); ^~~~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../include/typedefs.h:52, from ../../../src/kernel/specbond.c:42: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 12) into a destination of size 10 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../src/kernel/specbond.c:252:19: warning: '%d' directive writing between 1 and 11 bytes into a region of size 10 [-Wformat-overflow=] sprintf(buf,"%s%d",*pdba->resname[pdba->atom[sgp[i]].resnr], ^~ ../../../src/kernel/specbond.c:252:16: note: directive argument in the range [-2147483647, 2147483647] sprintf(buf,"%s%d",*pdba->resname[pdba->atom[sgp[i]].resnr], ^~~~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../include/typedefs.h:52, from ../../../src/kernel/specbond.c:42: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 12) into a destination of size 10 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../src/kernel/specbond.c:255:19: warning: '%d' directive writing between 1 and 11 bytes into a region of size 10 [-Wformat-overflow=] sprintf(buf,"%s%d", *pdba->atomname[sgp[i]], sgp[i]+1); ^~ ../../../src/kernel/specbond.c:255:16: note: directive argument in the range [-2147483647, 2147483647] sprintf(buf,"%s%d", *pdba->atomname[sgp[i]], sgp[i]+1); ^~~~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../include/typedefs.h:52, from ../../../src/kernel/specbond.c:42: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 12) into a destination of size 10 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o tomorse.lo ../../../src/kernel/tomorse.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/tomorse.c -fPIC -DPIC -o .libs/tomorse.o In file included from ../../../src/kernel/tomorse.c:46: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o topdirs.lo ../../../src/kernel/topdirs.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/topdirs.c -fPIC -DPIC -o .libs/topdirs.o make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gen_vsite.lo ../../../src/kernel/gen_vsite.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/gen_vsite.c -fPIC -DPIC -o .libs/gen_vsite.o ../../../src/kernel/gen_vsite.c: In function 'read_vsite_database': ../../../src/kernel/gen_vsite.c:150:34: warning: unused variable 'prevdir' [-Wunused-variable] int i,j,n,k,nvsite,ntop,curdir,prevdir; ^~~~~~~ ../../../src/kernel/gen_vsite.c:150:9: warning: unused variable 'j' [-Wunused-variable] int i,j,n,k,nvsite,ntop,curdir,prevdir; ^ ../../../src/kernel/gen_vsite.c: In function 'add_vsites': ../../../src/kernel/gen_vsite.c:477:33: warning: unused variable 'bb' [-Wunused-variable] int i,j,ftype,other,moreheavy,bb; ^~ ../../../src/kernel/gen_vsite.c: In function 'gen_vsites_6ring': ../../../src/kernel/gen_vsite.c:560:32: warning: variable 'yCE2' set but not used [-Wunused-but-set-variable] real xCG,yCG,xCE1,yCE1,xCE2,yCE2; ^~~~ ../../../src/kernel/gen_vsite.c:560:27: warning: variable 'xCE2' set but not used [-Wunused-but-set-variable] real xCG,yCG,xCE1,yCE1,xCE2,yCE2; ^~~~ ../../../src/kernel/gen_vsite.c:560:22: warning: variable 'yCE1' set but not used [-Wunused-but-set-variable] real xCG,yCG,xCE1,yCE1,xCE2,yCE2; ^~~~ ../../../src/kernel/gen_vsite.c:560:17: warning: variable 'xCE1' set but not used [-Wunused-but-set-variable] real xCG,yCG,xCE1,yCE1,xCE2,yCE2; ^~~~ ../../../src/kernel/gen_vsite.c:560:13: warning: variable 'yCG' set but not used [-Wunused-but-set-variable] real xCG,yCG,xCE1,yCE1,xCE2,yCE2; ^~~ ../../../src/kernel/gen_vsite.c: In function 'calc_vsite3_param': ../../../src/kernel/gen_vsite.c:693:13: warning: variable 'b_ik' set but not used [-Wunused-but-set-variable] real b_ij,b_ik; ^~~~ ../../../src/kernel/gen_vsite.c:693:8: warning: variable 'b_ij' set but not used [-Wunused-but-set-variable] real b_ij,b_ik; ^~~~ ../../../src/kernel/gen_vsite.c: In function 'gen_vsites_trp': ../../../src/kernel/gen_vsite.c:741:12: warning: unused variable 'c' [-Wunused-variable] real a,b,c[MAXFORCEPARAM]; ^ ../../../src/kernel/gen_vsite.c:740:14: warning: unused variable 'mtot' [-Wunused-variable] real mwtot,mtot,mM[NMASS],dCBM1,dCBM2,dM1M2; ^~~~ ../../../src/kernel/gen_vsite.c:740:8: warning: unused variable 'mwtot' [-Wunused-variable] real mwtot,mtot,mM[NMASS],dCBM1,dCBM2,dM1M2; ^~~~~ ../../../src/kernel/gen_vsite.c:738:8: warning: unused variable 'xM' [-Wunused-variable] real xM[NMASS]; ^~ ../../../src/kernel/gen_vsite.c:735:8: warning: variable 'a_CB_CG_CD1' set but not used [-Wunused-but-set-variable] real a_CB_CG_CD1,a_CD2_CG_CD1,a_CE2_CZ2_HZ2,a_CZ2_CH2_HH2; ^~~~~~~~~~~ ../../../src/kernel/gen_vsite.c:729:20: warning: unused variable 'dist' [-Wunused-variable] real lineA,lineB,dist; ^~~~ ../../../src/kernel/gen_vsite.c:729:14: warning: variable 'lineB' set but not used [-Wunused-but-set-variable] real lineA,lineB,dist; ^~~~~ ../../../src/kernel/gen_vsite.c:728:32: warning: unused variable 'I' [-Wunused-variable] real xcom[NMASS],ycom[NMASS],I,alpha; ^ ../../../src/kernel/gen_vsite.c: In function 'gen_vsites_tyr': ../../../src/kernel/gen_vsite.c:968:8: warning: unused variable 'vmass' [-Wunused-variable] real vmass,vdist,mM; ^~~~~ ../../../src/kernel/gen_vsite.c: In function 'do_vsites': ../../../src/kernel/gen_vsite.c:1332:29: warning: unused variable 'bb' [-Wunused-variable] int Hatoms[4],heavies[4],bb; ^~ In file included from ../../../src/kernel/gen_vsite.c:48: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/gen_vsite.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/hackblock.h:41, from ../../../src/kernel/gen_vsite.h:43, from ../../../src/kernel/gen_vsite.c:44: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/kernel/gen_vsite.h:41, from ../../../src/kernel/gen_vsite.c:44: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o topexcl.lo ../../../src/kernel/topexcl.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/topexcl.c -fPIC -DPIC -o .libs/topexcl.o In file included from ../../../include/gpp_nextnb.h:40, from ../../../src/kernel/topexcl.c:45: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o topshake.lo ../../../src/kernel/topshake.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/topshake.c -fPIC -DPIC -o .libs/topshake.o ../../../src/kernel/topshake.c: In function 'make_shake': ../../../src/kernel/topshake.c:98:19: warning: unused variable 'b' [-Wunused-variable] int nb,b,i,j,ftype,ftype_a; ^ ../../../src/kernel/topshake.c:98:16: warning: unused variable 'nb' [-Wunused-variable] int nb,b,i,j,ftype,ftype_a; ^~ In file included from ../../../src/kernel/topshake.c:46: At top level: ../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable] static const char *couple_lam[ecouplamNR+1] = { ^~~~~~~~~~ ../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable] static const char *constraints[eshNR+1] = { ^~~~~~~~~~~ In file included from ../../../src/kernel/readir.h:43, from ../../../src/kernel/topshake.c:46: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/readir.h:42, from ../../../src/kernel/topshake.c:46: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o toputil.lo ../../../src/kernel/toputil.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/toputil.c -fPIC -DPIC -o .libs/toputil.o ../../../src/kernel/toputil.c:135:13: warning: 'print_nbt' defined but not used [-Wunused-function] static void print_nbt (FILE *out,char *title,t_atomtype at, ^~~~~~~~~ In file included from ../../../src/kernel/topdirs.h:40, from ../../../src/kernel/toputil.c:45: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xlate.lo ../../../src/kernel/xlate.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/xlate.c -fPIC -DPIC -o .libs/xlate.o make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o glaasje.o ../../../src/kernel/glaasje.c ../../../src/kernel/glaasje.c: In function 'do_glas': ../../../src/kernel/glaasje.c:55:40: warning: unused variable 'r3' [-Wunused-variable] real wd,wdd,zi,fz,dd,d10,d4,d9,d3,r9,r3,sign,cc6,cc12; ^~ ../../../src/kernel/glaasje.c:55:37: warning: unused variable 'r9' [-Wunused-variable] real wd,wdd,zi,fz,dd,d10,d4,d9,d3,r9,r3,sign,cc6,cc12; ^~ In file included from ../../../src/kernel/glaasje.c:44: At top level: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gctio.o ../../../src/kernel/gctio.c In file included from ../../../src/kernel/gctio.c:49: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/kernel/xmdrun.h:50, from ../../../src/kernel/gctio.c:41: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o tpbcmp.lo ../../../src/kernel/tpbcmp.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/tpbcmp.c -fPIC -DPIC -o .libs/tpbcmp.o ../../../src/kernel/tpbcmp.c: In function 'cmp_block': ../../../src/kernel/tpbcmp.c:242:11: warning: unused variable 'k' [-Wunused-variable] int i,j,k; ^ ../../../src/kernel/tpbcmp.c:242:9: warning: unused variable 'j' [-Wunused-variable] int i,j,k; ^ ../../../src/kernel/tpbcmp.c:242:7: warning: unused variable 'i' [-Wunused-variable] int i,j,k; ^ ../../../src/kernel/tpbcmp.c: In function 'cmp_blocka': ../../../src/kernel/tpbcmp.c:252:11: warning: unused variable 'k' [-Wunused-variable] int i,j,k; ^ ../../../src/kernel/tpbcmp.c:252:9: warning: unused variable 'j' [-Wunused-variable] int i,j,k; ^ ../../../src/kernel/tpbcmp.c:252:7: warning: unused variable 'i' [-Wunused-variable] int i,j,k; ^ ../../../src/kernel/tpbcmp.c: In function 'cmp_atom': ../../../src/kernel/tpbcmp.c:265:8: warning: unused variable 'buf' [-Wunused-variable] char buf[256]; ^~~ ../../../src/kernel/tpbcmp.c:264:8: warning: unused variable 'i' [-Wunused-variable] int i; ^ ../../../src/kernel/tpbcmp.c: In function 'cmp_top': ../../../src/kernel/tpbcmp.c:302:7: warning: unused variable 'i' [-Wunused-variable] int i; ^ ../../../src/kernel/tpbcmp.c: In function 'comp_tpx': ../../../src/kernel/tpbcmp.c:567:15: warning: unused variable 'sh' [-Wunused-variable] t_tpxheader sh[2]; ^~ ../../../src/kernel/tpbcmp.c: In function 'comp_enx': ../../../src/kernel/tpbcmp.c:723:38: warning: unused variable 'buf' [-Wunused-variable] char **enm1=NULL,**enm2=NULL,buf[256]; ^~~ ../../../src/kernel/tpbcmp.c:721:36: warning: unused variable 'block' [-Wunused-variable] int in1,in2,nre,nre1,nre2,block; ^~~~~ At top level: ../../../src/kernel/tpbcmp.c:77:13: warning: 'cmp_uc' defined but not used [-Wunused-function] static void cmp_uc(FILE *fp,char *s,int index,unsigned char i1,unsigned char i2) ^~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/kernel/tpbcmp.c:48: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ionize.o ../../../src/kernel/ionize.c ../../../src/kernel/ionize.c: In function 'ionize': ../../../src/kernel/ionize.c:735:2: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (bL) ^~ ../../../src/kernel/ionize.c:737:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (ephot == 2) E_lost += 0.5; /* Real energy should be 2.5 KeV*/ ^~ In file included from ../../../src/kernel/ionize.c:48: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/ionize.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o topio.lo ../../../src/kernel/topio.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/topio.c -fPIC -DPIC -o .libs/topio.o ../../../src/kernel/topio.c: In function 'read_topol': ../../../src/kernel/topio.c:474:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation] else ^~~~ ../../../src/kernel/topio.c:476:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' break; ^~~~~ ../../../src/kernel/topio.c:314:15: warning: unused variable 'block' [-Wunused-variable] t_topology *block=NULL; ^~~~~ In file included from ../../../src/kernel/topio.h:41, from ../../../src/kernel/topio.c:66: At top level: ../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable] static const char *couple_lam[ecouplamNR+1] = { ^~~~~~~~~~ ../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable] static const char *constraints[eshNR+1] = { ^~~~~~~~~~~ In file included from ../../../src/kernel/readir.h:42, from ../../../src/kernel/topio.h:41, from ../../../src/kernel/topio.c:66: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/kernel/vsite_parm.h:41, from ../../../src/kernel/topio.c:59: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o do_gct.o ../../../src/kernel/do_gct.c ../../../src/kernel/do_gct.c: In function 'init_coupling': ../../../src/kernel/do_gct.c:63:19: warning: unused variable 'atj' [-Wunused-variable] int ati,atj; ^~~ ../../../src/kernel/do_gct.c:63:15: warning: unused variable 'ati' [-Wunused-variable] int ati,atj; ^~~ ../../../src/kernel/do_gct.c:62:26: warning: unused variable 'j' [-Wunused-variable] int i,nc,index,j; ^ ../../../src/kernel/do_gct.c:62:20: warning: unused variable 'index' [-Wunused-variable] int i,nc,index,j; ^~~~~ ../../../src/kernel/do_gct.c:62:17: warning: unused variable 'nc' [-Wunused-variable] int i,nc,index,j; ^~ ../../../src/kernel/do_gct.c:62:15: warning: unused variable 'i' [-Wunused-variable] int i,nc,index,j; ^ ../../../src/kernel/do_gct.c: In function 'do_coupling': ../../../src/kernel/do_gct.c:489:15: warning: unused variable 'bTest' [-Wunused-variable] bool bTest,bPrint; ^~~~~ ../../../src/kernel/do_gct.c:487:59: warning: unused variable 'xi12' [-Wunused-variable] real Epol,Eintern,Virial,muabs,xiH=-1,xiS=-1,xi6,xi12; ^~~~ ../../../src/kernel/do_gct.c:487:55: warning: unused variable 'xi6' [-Wunused-variable] real Epol,Eintern,Virial,muabs,xiH=-1,xiS=-1,xi6,xi12; ^~~ ../../../src/kernel/do_gct.c:486:32: warning: unused variable 'ffc' [-Wunused-variable] real ff6,ff12,ffa,ffb,ffc,ffq,factor,dt,mu_ind; ^~~ ../../../src/kernel/do_gct.c:486:28: warning: unused variable 'ffb' [-Wunused-variable] real ff6,ff12,ffa,ffb,ffc,ffq,factor,dt,mu_ind; ^~~ ../../../src/kernel/do_gct.c:486:24: warning: unused variable 'ffa' [-Wunused-variable] real ff6,ff12,ffa,ffb,ffc,ffq,factor,dt,mu_ind; ^~~ ../../../src/kernel/do_gct.c:485:60: warning: unused variable 'rmsf' [-Wunused-variable] real deviation[eoObsNR],prdev[eoObsNR],epot0,dist,rmsf; ^~~~ At top level: ../../../src/kernel/do_gct.c:457:13: warning: 'dump_fm' defined but not used [-Wunused-function] static void dump_fm(FILE *fp,int n,real f[],char *s) ^~~~~~~ In file included from ../../../src/kernel/do_gct.c:50: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../include/pull.h:44, from ../../../include/mdrun.h:56, from ../../../src/kernel/do_gct.c:48: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../include/pull.h:44, from ../../../include/mdrun.h:56, from ../../../src/kernel/do_gct.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/xmdrun.h:50, from ../../../src/kernel/do_gct.c:41: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o mdrun.o ../../../src/kernel/mdrun.c ../../../src/kernel/mdrun.c: In function 'main': ../../../src/kernel/mdrun.c:387:20: warning: unused variable 'fptest' [-Wunused-variable] FILE *fplog,*fptest; ^~~~~~ ../../../src/kernel/mdrun.c:386:12: warning: unused variable 'HaveCheckpoint' [-Wunused-variable] bool HaveCheckpoint; ^~~~~~~~~~~~~~ ../../../src/kernel/mdrun.c:285:15: warning: unused variable 'bPPPME' [-Wunused-variable] static bool bPPPME = FALSE; ^~~~~~ ../../../src/kernel/mdrun.c:284:15: warning: unused variable 'bCart' [-Wunused-variable] static bool bCart = FALSE; ^~~~~ At top level: ../../../src/kernel/mdrun.c:284:15: warning: 'bCart' defined but not used [-Wunused-variable] ../../../src/kernel/mdrun.c:285:15: warning: 'bPPPME' defined but not used [-Wunused-variable] static bool bPPPME = FALSE; ^~~~~~ In file included from ../../../include/pull.h:44, from ../../../include/mdrun.h:56, from ../../../src/kernel/mdrun.c:49: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../include/pull.h:44, from ../../../include/mdrun.h:56, from ../../../src/kernel/mdrun.c:49: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/mdrun.h:50, from ../../../src/kernel/mdrun.c:49: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/kernel/mdrun.c:44: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/kernel/mdrun.c:42: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o repl_ex.o ../../../src/kernel/repl_ex.c ../../../src/kernel/repl_ex.c: In function 'init_replica_exchange': ../../../src/kernel/repl_ex.c:111:8: warning: unused variable 'temp' [-Wunused-variable] real temp,pres; ^~~~ ../../../src/kernel/repl_ex.c: In function 'replica_exchange': ../../../src/kernel/repl_ex.c:560:20: warning: unused variable 'shift' [-Wunused-variable] int exchange=-1,shift; ^~~~~ At top level: ../../../src/kernel/repl_ex.c:544:13: warning: 'write_debug_x' defined but not used [-Wunused-function] static void write_debug_x(t_state *state) ^~~~~~~~~~~~~ In file included from ../../../src/kernel/repl_ex.c:48: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/repl_ex.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/repl_ex.c:46: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o toppush.lo ../../../src/kernel/toppush.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/toppush.c -fPIC -DPIC -o .libs/toppush.o ../../../src/kernel/toppush.c: In function 'push_bt': ../../../src/kernel/toppush.c:573:37: warning: variable 'nrfpB' set but not used [-Wunused-but-set-variable] int i,ft,ftype,nn,nrfp,nrfpA,nrfpB; ^~~~~ ../../../src/kernel/toppush.c: In function 'push_dihedraltype': ../../../src/kernel/toppush.c:661:37: warning: variable 'nrfpB' set but not used [-Wunused-but-set-variable] int i,ft,ftype,nn,nrfp,nrfpA,nrfpB,nral; ^~~~~ ../../../src/kernel/toppush.c: In function 'push_nbt': ../../../src/kernel/toppush.c:778:17: warning: unused variable 'sig6' [-Wunused-variable] real cr[4],sig6; ^~~~ ../../../src/kernel/toppush.c:776:23: warning: unused variable 'atnr' [-Wunused-variable] int i,f,n,ftype,atnr,nrfp; ^~~~ ../../../src/kernel/toppush.c: In function 'push_atom_now': ../../../src/kernel/toppush.c:871:7: warning: unused variable 'j' [-Wunused-variable] int j,resnr_diff=-1; ^ ../../../src/kernel/toppush.c: In function 'push_bond': ../../../src/kernel/toppush.c:1234:18: warning: unused variable 'paramB' [-Wunused-variable] t_param param,paramB,*param_defA,*param_defB; ^~~~~~ In file included from ../../../src/kernel/toppush.c:51: At top level: ../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable] static const char *couple_lam[ecouplamNR+1] = { ^~~~~~~~~~ ../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable] static const char *constraints[eshNR+1] = { ^~~~~~~~~~~ In file included from ../../../src/kernel/readir.h:42, from ../../../src/kernel/toppush.c:51: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/kernel/toputil.h:40, from ../../../src/kernel/toppush.c:48: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ ../../../src/kernel/toppush.c: In function 'push_at': ../../../src/kernel/toppush.c:446:41: warning: '%s' directive writing up to 4095 bytes into a region of size 236 [-Wformat-overflow=] sprintf(errbuf,"Overriding atomtype %s",type); ^~ ~~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../src/kernel/toppush.c:43: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 21 and 4116 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xutils.o ../../../src/kernel/xutils.c ../../../src/kernel/xutils.c: In function 'calc_mu_aver': ../../../src/kernel/xutils.c:65:19: warning: variable 'end' set but not used [-Wunused-but-set-variable] int i,start,end; ^~~ ../../../src/kernel/xutils.c: In function 'update_forcefield': ../../../src/kernel/xutils.c:335:10: warning: unused variable 'bDone' [-Wunused-variable] bool bDone; ^~~~~ In file included from ../../../src/kernel/xutils.c:45: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/xutils.c:45: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/xmdrun.h:50, from ../../../src/kernel/xutils.c:44: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o readir.lo ../../../src/kernel/readir.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/readir.c -fPIC -DPIC -o .libs/readir.o ../../../src/kernel/readir.c: In function 'do_index': ../../../src/kernel/readir.c:1427:38: warning: variable 'nbTS' set but not used [-Wunused-but-set-variable] nSAon,nSAoff,nSAsteps,nQMg,nbOPT,nbTS; ^~~~ ../../../src/kernel/readir.c:1427:32: warning: variable 'nbOPT' set but not used [-Wunused-but-set-variable] nSAon,nSAoff,nSAsteps,nQMg,nbOPT,nbTS; ^~~~~ ../../../src/kernel/readir.c:1427:18: warning: variable 'nSAsteps' set but not used [-Wunused-but-set-variable] nSAon,nSAoff,nSAsteps,nQMg,nbOPT,nbTS; ^~~~~~~~ ../../../src/kernel/readir.c:1427:11: warning: variable 'nSAoff' set but not used [-Wunused-but-set-variable] nSAon,nSAoff,nSAsteps,nQMg,nbOPT,nbTS; ^~~~~~ ../../../src/kernel/readir.c:1427:5: warning: variable 'nSAon' set but not used [-Wunused-but-set-variable] nSAon,nSAoff,nSAsteps,nQMg,nbOPT,nbTS; ^~~~~ ../../../src/kernel/readir.c:1426:61: warning: variable 'nCASelec' set but not used [-Wunused-but-set-variable] int nQMmethod,nQMbasis,nQMcharge,nQMmult,nbSH,nCASorb,nCASelec, ^~~~~~~~ ../../../src/kernel/readir.c:1426:53: warning: variable 'nCASorb' set but not used [-Wunused-but-set-variable] int nQMmethod,nQMbasis,nQMcharge,nQMmult,nbSH,nCASorb,nCASelec, ^~~~~~~ ../../../src/kernel/readir.c:1426:48: warning: variable 'nbSH' set but not used [-Wunused-but-set-variable] int nQMmethod,nQMbasis,nQMcharge,nQMmult,nbSH,nCASorb,nCASelec, ^~~~ ../../../src/kernel/readir.c:1426:40: warning: variable 'nQMmult' set but not used [-Wunused-but-set-variable] int nQMmethod,nQMbasis,nQMcharge,nQMmult,nbSH,nCASorb,nCASelec, ^~~~~~~ ../../../src/kernel/readir.c:1426:30: warning: variable 'nQMcharge' set but not used [-Wunused-but-set-variable] int nQMmethod,nQMbasis,nQMcharge,nQMmult,nbSH,nCASorb,nCASelec, ^~~~~~~~~ ../../../src/kernel/readir.c:1424:11: warning: unused variable 'SAtime' [-Wunused-variable] real SAtime; ^~~~~~ ../../../src/kernel/readir.c: In function 'triple_check': ../../../src/kernel/readir.c:1872:17: warning: unused variable 'npct' [-Wunused-variable] int i,m,nmol,npct; ^~~~ In file included from ../../../src/kernel/readir.c:58: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/readir.c:58: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/readir.h:43, from ../../../src/kernel/readir.c:54: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/readir.c:53: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o protonate.o ../../../src/kernel/protonate.c In file included from ../../../src/kernel/protonate.c:50: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/protonate.c:50: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/hackblock.h:42, from ../../../src/kernel/genhydro.h:41, from ../../../src/kernel/protonate.c:47: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/genhydro.h:40, from ../../../src/kernel/protonate.c:47: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/kernel/protonate.c:45: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/kernel/protonate.c:43: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o luck.o ../../../src/kernel/luck.c In file included from ../../../include/statutil.h:51, from ../../../src/kernel/luck.c:43: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/kernel/luck.c:41: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o genalg.o ../../../src/kernel/genalg.c ../../../src/kernel/genalg.c: In function 'update_ga': ../../../src/kernel/genalg.c:197:12: warning: unused variable 'j' [-Wunused-variable] int i, j, L, n; /* counting variables */ ^ In file included from ../../../src/kernel/genalg.c:75: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/genalg.c:75: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o vsite_parm.lo ../../../src/kernel/vsite_parm.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/kernel/vsite_parm.c -fPIC -DPIC -o .libs/vsite_parm.o ../../../src/kernel/vsite_parm.c: In function 'clean_vsite_bonds': ../../../src/kernel/vsite_parm.c:862:62: warning: unused variable 'vsitetype' [-Wunused-variable] int ftype,i,j,parnr,k,l,m,n,nvsite,nOut,kept_i,vsnral,vsitetype; ^~~~~~~~~ ../../../src/kernel/vsite_parm.c:862:30: warning: unused variable 'l' [-Wunused-variable] int ftype,i,j,parnr,k,l,m,n,nvsite,nOut,kept_i,vsnral,vsitetype; ^ ../../../src/kernel/vsite_parm.c:862:22: warning: unused variable 'parnr' [-Wunused-variable] int ftype,i,j,parnr,k,l,m,n,nvsite,nOut,kept_i,vsnral,vsitetype; ^~~~~ ../../../src/kernel/vsite_parm.c: In function 'clean_vsite_angles': ../../../src/kernel/vsite_parm.c:1035:51: warning: unused variable 'vsitetype' [-Wunused-variable] int i,j,parnr,k,l,m,n,nvsite,kept_i,vsnral,vsitetype; ^~~~~~~~~ ../../../src/kernel/vsite_parm.c:1035:24: warning: unused variable 'l' [-Wunused-variable] int i,j,parnr,k,l,m,n,nvsite,kept_i,vsnral,vsitetype; ^ ../../../src/kernel/vsite_parm.c:1035:16: warning: unused variable 'parnr' [-Wunused-variable] int i,j,parnr,k,l,m,n,nvsite,kept_i,vsnral,vsitetype; ^~~~~ ../../../src/kernel/vsite_parm.c: In function 'clean_vsite_dihs': ../../../src/kernel/vsite_parm.c:1130:28: warning: unused variable 'l' [-Wunused-variable] int ftype,i,parnr,k,l,m,n,nvsite,kept_i,vsnral; ^ ../../../src/kernel/vsite_parm.c:1130:20: warning: unused variable 'parnr' [-Wunused-variable] int ftype,i,parnr,k,l,m,n,nvsite,kept_i,vsnral; ^~~~~ ../../../src/kernel/vsite_parm.c:1130:12: warning: unused variable 'ftype' [-Wunused-variable] int ftype,i,parnr,k,l,m,n,nvsite,kept_i,vsnral; ^~~~~ In file included from ../../../src/kernel/vsite_parm.c:47: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/vsite_parm.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/hackblock.h:41, from ../../../src/kernel/resall.h:41, from ../../../src/kernel/vsite_parm.c:45: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/kernel/vsite_parm.h:41, from ../../../src/kernel/vsite_parm.c:43: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o tpbconv.o ../../../src/kernel/tpbconv.c ../../../src/kernel/tpbconv.c: In function 'main': ../../../src/kernel/tpbconv.c:365:7: warning: unused variable 'nerror' [-Wunused-variable] int nerror = 0; ^~~~~~ ../../../src/kernel/tpbconv.c:325:17: warning: unused variable 'gopts' [-Wunused-variable] t_gromppopts *gopts; ^~~~~ ../../../src/kernel/tpbconv.c:324:21: warning: unused variable 'irnew' [-Wunused-variable] t_inputrec *ir,*irnew=NULL; ^~~~~ ../../../src/kernel/tpbconv.c:318:33: warning: unused variable 'nsteps_org' [-Wunused-variable] int i,frame,run_step,nsteps_org; ^~~~~~~~~~ In file included from ../../../src/kernel/tpbconv.c:56: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/tpbconv.c:56: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/tpbconv.c:54: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/kernel/tpbconv.c:52: ../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable] static const char *couple_lam[ecouplamNR+1] = { ^~~~~~~~~~ ../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable] static const char *constraints[eshNR+1] = { ^~~~~~~~~~~ In file included from ../../../src/kernel/readir.h:43, from ../../../src/kernel/tpbconv.c:52: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/readir.h:42, from ../../../src/kernel/tpbconv.c:52: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmxdump.o ../../../src/kernel/gmxdump.c ../../../src/kernel/gmxdump.c: In function 'list_tpx': ../../../src/kernel/gmxdump.c:146:16: warning: left-hand operand of comma expression has no effect [-Wunused-value] if (state,tpx.bF) { ^ ../../../src/kernel/gmxdump.c:99:20: warning: unused variable 'fp' [-Wunused-variable] int step,fp,indent,i,j,**gcount,atot; ^~ ../../../src/kernel/gmxdump.c: In function 'list_ene': ../../../src/kernel/gmxdump.c:314:17: warning: unused variable 'ndr' [-Wunused-variable] int in,ndr; ^~~ At top level: ../../../src/kernel/gmxdump.c:65:13: warning: 'dump_top' defined but not used [-Wunused-function] static void dump_top(FILE *fp,t_topology *top,char *tpr) ^~~~~~~~ In file included from ../../../src/kernel/gmxdump.c:47: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/kernel/gmxdump.c:46: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nm2type.o ../../../src/kernel/nm2type.c ../../../src/kernel/nm2type.c: In function 'rd_nm2type': ../../../src/kernel/nm2type.c:72:20: warning: unused variable 'blen' [-Wunused-variable] double qq,mm,*blen; ^~~~ ../../../src/kernel/nm2type.c: In function 'nm2type': ../../../src/kernel/nm2type.c:160:38: warning: unused variable 'quality' [-Wunused-variable] int *bbb,*n_mask,*m_mask,**match,**quality; ^~~~~~~ In file included from ../../../src/kernel/hackblock.h:41, from ../../../src/kernel/pdb2top.h:43, from ../../../src/kernel/nm2type.c:59: At top level: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/kernel/toputil.h:40, from ../../../src/kernel/toppush.h:41, from ../../../src/kernel/nm2type.c:58: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/nm2type.c:52: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/kernel/nm2type.c:51: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/kernel/nm2type.c:44: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/kernel/nm2type.c:42: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o x2top.o ../../../src/kernel/x2top.c ../../../src/kernel/x2top.c: In function 'set_cgnr': ../../../src/kernel/x2top.c:178:15: warning: unused variable 'mt' [-Wunused-variable] double qt=0,mt=0; ^~ ../../../src/kernel/x2top.c: In function 'set_force_const': ../../../src/kernel/x2top.c:255:7: warning: unused variable 'i' [-Wunused-variable] int i; ^ ../../../src/kernel/x2top.c: In function 'main': ../../../src/kernel/x2top.c:419:15: warning: unused variable 'scale' [-Wunused-variable] static real scale = 1.1, kb = 4e5,kt = 400,kp = 5; ^~~~~ ../../../src/kernel/x2top.c:411:14: warning: unused variable 'cutoff' [-Wunused-variable] real cutoff,qtot,mtot; ^~~~~~ ../../../src/kernel/x2top.c:408:24: warning: unused variable 'ndih' [-Wunused-variable] int i,j,k,l,m,ndih; ^~~~ ../../../src/kernel/x2top.c:408:22: warning: unused variable 'm' [-Wunused-variable] int i,j,k,l,m,ndih; ^ ../../../src/kernel/x2top.c:408:20: warning: unused variable 'l' [-Wunused-variable] int i,j,k,l,m,ndih; ^ ../../../src/kernel/x2top.c:408:18: warning: unused variable 'k' [-Wunused-variable] int i,j,k,l,m,ndih; ^ ../../../src/kernel/x2top.c:408:16: warning: unused variable 'j' [-Wunused-variable] int i,j,k,l,m,ndih; ^ ../../../src/kernel/x2top.c:408:14: warning: unused variable 'i' [-Wunused-variable] int i,j,k,l,m,ndih; ^ ../../../src/kernel/x2top.c:407:14: warning: unused variable 'nres' [-Wunused-variable] int nres; /* number of molecules? */ ^~~~ At top level: ../../../src/kernel/x2top.c:419:15: warning: 'scale' defined but not used [-Wunused-variable] static real scale = 1.1, kb = 4e5,kt = 400,kp = 5; ^~~~~ ../../../src/kernel/x2top.c:117:12: warning: 'get_atype' defined but not used [-Wunused-function] static int get_atype(char *nm) ^~~~~~~~~ ../../../src/kernel/x2top.c:80:13: warning: 'set_x_blen' defined but not used [-Wunused-function] static real set_x_blen(real scale) ^~~~~~~~~~ In file included from ../../../src/kernel/topio.h:41, from ../../../src/kernel/gen_ad.h:42, from ../../../src/kernel/x2top.c:60: ../../../src/kernel/readir.h:53:20: warning: 'couple_lam' defined but not used [-Wunused-variable] static const char *couple_lam[ecouplamNR+1] = { ^~~~~~~~~~ ../../../src/kernel/readir.h:47:20: warning: 'constraints' defined but not used [-Wunused-variable] static const char *constraints[eshNR+1] = { ^~~~~~~~~~~ In file included from ../../../src/kernel/hackblock.h:41, from ../../../src/kernel/pdb2top.h:43, from ../../../src/kernel/x2top.c:59: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/kernel/toputil.h:40, from ../../../src/kernel/toppush.h:41, from ../../../src/kernel/x2top.c:58: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/x2top.c:52: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/kernel/x2top.c:51: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/kernel/x2top.c:42: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/kernel/x2top.c:40: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o libgmxpreprocess_mpi_d.la add_par.lo compute_io.lo convparm.lo gen_ad.lo gen_vsite.lo genhydro.lo gmxcpp.lo gpp_atomtype.lo gpp_bond_atomtype.lo h_db.lo hackblock.lo hizzie.lo pdb2top.lo pgutil.lo readir.lo readpull.lo resall.lo sorting.lo specbond.lo ter_db.lo tomorse.lo topdirs.lo topexcl.lo topio.lo toppush.lo topshake.lo toputil.lo tpbcmp.lo vsite_parm.lo xlate.lo -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath ar cru .libs/libgmxpreprocess_mpi_d.a .libs/add_par.o .libs/compute_io.o .libs/convparm.o .libs/gen_ad.o .libs/gen_vsite.o .libs/genhydro.o .libs/gmxcpp.o .libs/gpp_atomtype.o .libs/gpp_bond_atomtype.o .libs/h_db.o .libs/hackblock.o .libs/hizzie.o .libs/pdb2top.o .libs/pgutil.o .libs/readir.o .libs/readpull.o .libs/resall.o .libs/sorting.o .libs/specbond.o .libs/ter_db.o .libs/tomorse.o .libs/topdirs.o .libs/topexcl.o .libs/topio.o .libs/toppush.o .libs/topshake.o .libs/toputil.o .libs/tpbcmp.o .libs/vsite_parm.o .libs/xlate.o ranlib .libs/libgmxpreprocess_mpi_d.a creating libgmxpreprocess_mpi_d.la (cd .libs && rm -f libgmxpreprocess_mpi_d.la && ln -s ../libgmxpreprocess_mpi_d.la libgmxpreprocess_mpi_d.la) make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmxcheck.o ../../../src/kernel/gmxcheck.c ../../../src/kernel/gmxcheck.c: In function 'tpx2system': ../../../src/kernel/gmxcheck.c:90:7: warning: unused variable 'i' [-Wunused-variable] int i,nmol,nvsite=0; ^ ../../../src/kernel/gmxcheck.c: In function 'tpx2methods': ../../../src/kernel/gmxcheck.c:140:15: warning: unused variable 'i' [-Wunused-variable] int i,step; ^ ../../../src/kernel/gmxcheck.c:136:15: warning: unused variable 'sh' [-Wunused-variable] t_tpxheader sh; ^~ ../../../src/kernel/gmxcheck.c: In function 'chk_bonds': ../../../src/kernel/gmxcheck.c:202:26: warning: variable 'devtot' set but not used [-Wunused-but-set-variable] real b0,blen,deviation,devtot; ^~~~~~ ../../../src/kernel/gmxcheck.c:201:14: warning: unused variable 'i' [-Wunused-variable] int ftype,i,k,ai,aj,type; ^ ../../../src/kernel/gmxcheck.c: In function 'chk_trj': ../../../src/kernel/gmxcheck.c:252:35: warning: unused variable 'bOK' [-Wunused-variable] bool bShowTimestep=TRUE,bOK,newline=FALSE; ^~~ ../../../src/kernel/gmxcheck.c:251:40: warning: unused variable 'prec' [-Wunused-variable] real rdum,t,tt,old_t1,old_t2,prec; ^~~~ ../../../src/kernel/gmxcheck.c:251:23: warning: unused variable 'tt' [-Wunused-variable] real rdum,t,tt,old_t1,old_t2,prec; ^~ ../../../src/kernel/gmxcheck.c:251:16: warning: unused variable 'rdum' [-Wunused-variable] real rdum,t,tt,old_t1,old_t2,prec; ^~~~ ../../../src/kernel/gmxcheck.c:250:16: warning: variable 'fpos' set but not used [-Wunused-but-set-variable] off_t fpos; ^~~~ ../../../src/kernel/gmxcheck.c: In function 'chk_ndx': ../../../src/kernel/gmxcheck.c:526:10: warning: unused variable 'j' [-Wunused-variable] int i,j; ^ ../../../src/kernel/gmxcheck.c: In function 'chk_enx': ../../../src/kernel/gmxcheck.c:550:25: warning: unused variable 'ndr' [-Wunused-variable] int in,nre,fnr,ndr; ^~~ In file included from ../../../src/kernel/gmxcheck.c:57: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/gmxcheck.c:57: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/gmxcheck.c:48: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/kernel/gmxcheck.c:47: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pdb2gmx.o ../../../src/kernel/pdb2gmx.c ../../../src/kernel/pdb2gmx.c:149:20: warning: 'get_cystp' defined but not used [-Wunused-function] static const char *get_cystp(int resnr) ^~~~~~~~~ In file included from ../../../src/kernel/toputil.h:40, from ../../../src/kernel/pdb2gmx.c:55: ../../../include/grompp.h:141:14: warning: 'ds' defined but not used [-Wunused-variable] static char *ds[d_maxdir+1] = { ^~ In file included from ../../../src/kernel/pdb2gmx.c:54: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/kernel/pdb2gmx.c:51: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/kernel/pdb2gmx.c:50: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/pdb2gmx.c:50: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/kernel/pdb2gmx.c:46: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ ../../../src/kernel/pdb2gmx.c: In function 'main': ../../../src/kernel/pdb2gmx.c:783:18: warning: '.rtp' directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(rtp,"%s.rtp",forcefield); ^~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../src/kernel/pdb2gmx.c:42: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 5 and 4100 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../src/kernel/pdb2gmx.c:1162:31: warning: '%s' directive writing up to 4095 bytes into a region of size 4089 [-Wformat-overflow=] sprintf(molname,"Protein%s",suffix); ^~ ~~~~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../src/kernel/pdb2gmx.c:42: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 8 and 4103 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../src/kernel/pdb2gmx.c:1176:22: warning: '_pr.itp' directive writing 7 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(posre_fn,"%s_pr.itp",buf_fn); ^~~~~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../src/kernel/pdb2gmx.c:42: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 8 and 4103 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' mpicc -DHAVE_CONFIG_H -I. -I../../../src/kernel -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o md.o ../../../src/kernel/md.c ../../../src/kernel/md.c: In function 'mdrunner': ../../../src/kernel/md.c:140:15: warning: unused variable 'gro' [-Wunused-variable] char *gro; ^~~ ../../../src/kernel/md.c:139:45: warning: unused variable 'nalloc' [-Wunused-variable] int i,m,nChargePerturbed=-1,status,nalloc; ^~~~~~ ../../../src/kernel/md.c:139:16: warning: unused variable 'm' [-Wunused-variable] int i,m,nChargePerturbed=-1,status,nalloc; ^ ../../../src/kernel/md.c:139:14: warning: unused variable 'i' [-Wunused-variable] int i,m,nChargePerturbed=-1,status,nalloc; ^ ../../../src/kernel/md.c:128:20: warning: unused variable 'tmpr2' [-Wunused-variable] real tmpr1,tmpr2; ^~~~~ ../../../src/kernel/md.c:128:14: warning: unused variable 'tmpr1' [-Wunused-variable] real tmpr1,tmpr2; ^~~~~ ../../../src/kernel/md.c: In function 'do_md': ../../../src/kernel/md.c:533:16: warning: unused variable 'grpname' [-Wunused-variable] char *grpname; ^~~~~~~ ../../../src/kernel/md.c:525:15: warning: unused variable 'timestep' [-Wunused-variable] real timestep=0; ^~~~~~~~ In file included from ../../../include/pppm.h:46, from ../../../src/kernel/md.c:69: At top level: ../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function] static t_complex cdiv(t_complex teller,t_complex noemer) ^~~~ ../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function] static t_complex csub(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function] static t_complex cadd(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function] static t_complex rcexp(real r) ^~~~~ ../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable] static t_complex cnul = { 0.0, 0.0 }; ^~~~ In file included from ../../../include/statutil.h:51, from ../../../src/kernel/md.c:46: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/kernel/md.c:45: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/kernel/md.c:45: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o luck luck.o libgmxpreprocess_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/luck luck.o ./.libs/libgmxpreprocess_mpi_d.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath creating luck make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o tpbconv tpbconv.o libgmxpreprocess_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/tpbconv tpbconv.o ./.libs/libgmxpreprocess_mpi_d.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath creating tpbconv make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o gmxdump gmxdump.o libgmxpreprocess_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/gmxdump gmxdump.o ./.libs/libgmxpreprocess_mpi_d.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath creating gmxdump make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o grompp grompp.o libgmxpreprocess_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/grompp grompp.o ./.libs/libgmxpreprocess_mpi_d.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath creating grompp make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o protonate protonate.o libgmxpreprocess_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/protonate protonate.o ./.libs/libgmxpreprocess_mpi_d.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath creating protonate make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o x2top x2top.o nm2type.o libgmxpreprocess_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/x2top x2top.o nm2type.o ./.libs/libgmxpreprocess_mpi_d.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath creating x2top make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o pdb2gmx pdb2gmx.o libgmxpreprocess_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/pdb2gmx pdb2gmx.o ./.libs/libgmxpreprocess_mpi_d.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath creating pdb2gmx make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o gmxcheck gmxcheck.o libgmxpreprocess_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/gmxcheck gmxcheck.o ./.libs/libgmxpreprocess_mpi_d.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath creating gmxcheck make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o mdrun glaasje.o gctio.o ionize.o do_gct.o repl_ex.o xutils.o md.o mdrun.o genalg.o libgmxpreprocess_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/mdrun glaasje.o gctio.o ionize.o do_gct.o repl_ex.o xutils.o md.o mdrun.o genalg.o ./.libs/libgmxpreprocess_mpi_d.a -lgslcblas -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -lopenblas -llapack -lgfortran -lm -lquadmath creating mdrun make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' Making all in tools make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o polynomials.lo ../../../src/tools/polynomials.c mkdir .libs mkdir: cannot create directory '.libs': File exists mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/polynomials.c -fPIC -DPIC -o .libs/polynomials.o In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/tools/polynomials.c:44: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pp2shift.lo ../../../src/tools/pp2shift.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/pp2shift.c -fPIC -DPIC -o .libs/pp2shift.o In file included from ../../../src/tools/pp2shift.c:50: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/pp2shift.c:47: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o do_dssp.o ../../../src/tools/do_dssp.c ../../../src/tools/do_dssp.c: In function 'main': ../../../src/tools/do_dssp.c:347:16: warning: unused variable 'j' [-Wunused-variable] int i,j,natoms,nframe=0; ^ In file included from ../../../src/tools/do_dssp.c:49: At top level: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/tools/do_dssp.c:48: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/do_dssp.c:47: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dlist.lo ../../../src/tools/dlist.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/dlist.c -fPIC -DPIC -o .libs/dlist.o In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/tools/dlist.c:44: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o eigio.lo ../../../src/tools/eigio.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/eigio.c -fPIC -DPIC -o .libs/eigio.o In file included from ../../../src/tools/eigio.c:41: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/eigio.c:41: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o expfit.lo ../../../src/tools/expfit.c mkdir .libs mkdir: cannot create directory '.libs': File exists mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/expfit.c -fPIC -DPIC -o .libs/expfit.o In file included from ../../../src/tools/expfit.c:49: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/expfit.c:49: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/tools/expfit.c:48: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o lsq.lo ../../../src/tools/lsq.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/lsq.c -fPIC -DPIC -o .libs/lsq.o In file included from ../../../src/tools/lsq.c:42: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/lsq.c:42: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/tools/lsq.c:41: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o levenmar.lo ../../../src/tools/levenmar.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/levenmar.c -fPIC -DPIC -o .libs/levenmar.o ../../../src/tools/levenmar.c:224:13: warning: 'free_convert_matrix' defined but not used [-Wunused-function] static void free_convert_matrix(real **b, int nrl) ^~~~~~~~~~~~~~~~~~~ ../../../src/tools/levenmar.c:208:15: warning: 'convert_matrix' defined but not used [-Wunused-function] static real **convert_matrix(real *a, int nrl, int nrh, int ncl, int nch) ^~~~~~~~~~~~~~ ../../../src/tools/levenmar.c:201:13: warning: 'free_submatrix' defined but not used [-Wunused-function] static void free_submatrix(real **b, int nrl) ^~~~~~~~~~~~~~ ../../../src/tools/levenmar.c:191:13: warning: 'free_imatrix' defined but not used [-Wunused-function] static void free_imatrix(int **m, int nrl, int nrh, int ncl) ^~~~~~~~~~~~ ../../../src/tools/levenmar.c:183:13: warning: 'free_dmatrix' defined but not used [-Wunused-function] static void free_dmatrix(double **m, int nrl, int nrh, int ncl) ^~~~~~~~~~~~ ../../../src/tools/levenmar.c:168:13: warning: 'free_dvector' defined but not used [-Wunused-function] static void free_dvector(int *v, int nl) ^~~~~~~~~~~~ ../../../src/tools/levenmar.c:141:15: warning: 'submatrix' defined but not used [-Wunused-function] static real **submatrix(real **a, int oldrl, int oldrh, int oldcl, ^~~~~~~~~ ../../../src/tools/levenmar.c:123:14: warning: 'imatrix1' defined but not used [-Wunused-function] static int **imatrix1(int nrl, int nrh, int ncl, int nch) ^~~~~~~~ ../../../src/tools/levenmar.c:106:17: warning: 'dmatrix' defined but not used [-Wunused-function] static double **dmatrix(int nrl, int nrh, int ncl, int nch) ^~~~~~~ ../../../src/tools/levenmar.c:78:16: warning: 'dvector' defined but not used [-Wunused-function] static double *dvector(int nl, int nh) ^~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o cmat.lo ../../../src/tools/cmat.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/cmat.c -fPIC -DPIC -o .libs/cmat.o make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o eigensolver.lo ../../../src/tools/eigensolver.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/eigensolver.c -fPIC -DPIC -o .libs/eigensolver.o ../../../src/tools/eigensolver.c: In function 'eigensolver': ../../../src/tools/eigensolver.c:65:16: warning: unused variable 'iu' [-Wunused-variable] int il,iu,m,iw0,info; ^~ ../../../src/tools/eigensolver.c:65:13: warning: unused variable 'il' [-Wunused-variable] int il,iu,m,iw0,info; ^~ ../../../src/tools/eigensolver.c: In function 'sparse_eigensolver': ../../../src/tools/eigensolver.c:296:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(i=0;i<11;i++) ^~~ ../../../src/tools/eigensolver.c:299:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' iparam[0] = 1; /* Don't use explicit shifts */ ^~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o anadih.lo ../../../src/tools/anadih.c mkdir .libs mkdir: cannot create directory '.libs': File exists mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/anadih.c -fPIC -DPIC -o .libs/anadih.o In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/tools/anadih.c:51: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/anadih.c:50: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/anadih.c:50: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o autocorr.lo ../../../src/tools/autocorr.c mkdir .libs mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/autocorr.c -fPIC -DPIC -o .libs/autocorr.o In file included from ../../../include/gmx_fft.h:41, from ../../../src/tools/correl.h:40, from ../../../src/tools/autocorr.c:53: ../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function] static t_complex cdiv(t_complex teller,t_complex noemer) ^~~~ ../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function] static t_complex csub(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function] static t_complex cadd(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function] static t_complex rcexp(real r) ^~~~~ ../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable] static t_complex cnul = { 0.0, 0.0 }; ^~~~ In file included from ../../../src/tools/autocorr.c:51: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/autocorr.c:51: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/tools/autocorr.c:48: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o fitahx.lo ../../../src/tools/fitahx.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/fitahx.c -fPIC -DPIC -o .libs/fitahx.o In file included from ../../../src/tools/fitahx.c:41: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/fitahx.c:41: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_bond.lo ../../../src/tools/gmx_bond.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_bond.c -fPIC -DPIC -o .libs/gmx_bond.o In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_bond.c:51: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_bond.c:48: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_bond.c:45: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_bond.c:45: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o hxprops.lo ../../../src/tools/hxprops.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/hxprops.c -fPIC -DPIC -o .libs/hxprops.o ../../../src/tools/hxprops.c: In function 'ellipticity': ../../../src/tools/hxprops.c:85:14: warning: unused variable 'Xi' [-Wunused-variable] const real Xi=1.0; ^~ In file included from ../../../src/tools/hxprops.c:46: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/hxprops.c:46: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_angle.lo ../../../src/tools/gmx_angle.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_angle.c -fPIC -DPIC -o .libs/gmx_angle.o ../../../src/tools/gmx_angle.c: In function 'gmx_angle': ../../../src/tools/gmx_angle.c:147:14: warning: unused variable 'buf' [-Wunused-variable] char buf[80]; ^~~ ../../../src/tools/gmx_angle.c:143:38: warning: unused variable 'fraction' [-Wunused-variable] real t,aa,aver,aver2,aversig,fraction; /* fraction trans dihedrals */ ^~~~~~~~ ../../../src/tools/gmx_angle.c:143:16: warning: unused variable 'aa' [-Wunused-variable] real t,aa,aver,aver2,aversig,fraction; /* fraction trans dihedrals */ ^~ ../../../src/tools/gmx_angle.c:143:14: warning: unused variable 't' [-Wunused-variable] real t,aa,aver,aver2,aversig,fraction; /* fraction trans dihedrals */ ^ ../../../src/tools/gmx_angle.c:138:55: warning: unused variable 'angind' [-Wunused-variable] int i,j,total,nangles,natoms,nat2,first,last,angind; ^~~~~~ ../../../src/tools/gmx_angle.c:138:39: warning: unused variable 'nat2' [-Wunused-variable] int i,j,total,nangles,natoms,nat2,first,last,angind; ^~~~ ../../../src/tools/gmx_angle.c:138:32: warning: unused variable 'natoms' [-Wunused-variable] int i,j,total,nangles,natoms,nat2,first,last,angind; ^~~~~~ ../../../src/tools/gmx_angle.c:138:18: warning: unused variable 'total' [-Wunused-variable] int i,j,total,nangles,natoms,nat2,first,last,angind; ^~~~~ ../../../src/tools/gmx_angle.c:135:21: warning: unused variable 'Jc' [-Wunused-variable] real maxang,Jc,S2,norm_fac,maxstat; ^~ ../../../src/tools/gmx_angle.c:132:14: warning: unused variable 'status' [-Wunused-variable] int status,isize; ^~~~~~ ../../../src/tools/gmx_angle.c:131:14: warning: unused variable 'tmp' [-Wunused-variable] real tmp,dt; ^~~ In file included from ../../../src/tools/gmx_angle.c:49: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_angle.c:49: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/tools/gmx_angle.c:48: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_angle.c:47: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_bundle.lo ../../../src/tools/gmx_bundle.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_bundle.c -fPIC -DPIC -o .libs/gmx_bundle.o ../../../src/tools/gmx_bundle.c: In function 'dump_axes': ../../../src/tools/gmx_bundle.c:141:17: warning: unused variable 'end' [-Wunused-variable] int i,end; ^~~ ../../../src/tools/gmx_bundle.c: In function 'gmx_bundle': ../../../src/tools/gmx_bundle.c:210:16: warning: unused variable 'j' [-Wunused-variable] int i,j,gnx[MAX_ENDS]; ^ ../../../src/tools/gmx_bundle.c:208:14: warning: unused variable 'natoms' [-Wunused-variable] int natoms; ^~~~~~ ../../../src/tools/gmx_bundle.c:198:15: warning: unused variable 'out' [-Wunused-variable] FILE *out,*flen,*fdist,*fz,*ftilt,*ftiltr,*ftiltl; ^~~ In file included from ../../../src/tools/gmx_bundle.c:48: At top level: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_bundle.c:47: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_bundle.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_bundle.c:42: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_analyze.lo ../../../src/tools/gmx_analyze.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_analyze.c -fPIC -DPIC -o .libs/gmx_analyze.o ../../../src/tools/gmx_analyze.c: In function 'luzar_correl': ../../../src/tools/gmx_analyze.c:514:8: warning: unused variable 'weight' [-Wunused-variable] real weight,d2; ^~~~~~ ../../../src/tools/gmx_analyze.c:512:14: warning: unused variable 'tol' [-Wunused-variable] const real tol = 1e-8; ^~~ ../../../src/tools/gmx_analyze.c: In function 'gmx_analyze': ../../../src/tools/gmx_analyze.c:744:63: warning: unused variable 'bLuzarError' [-Wunused-variable] static bool bIntegrate=FALSE,bRegression=FALSE,bLuzar=FALSE,bLuzarError=FALSE; ^~~~~~~~~~~ At top level: ../../../src/tools/gmx_analyze.c:744:63: warning: 'bLuzarError' defined but not used [-Wunused-variable] ../../../src/tools/gmx_analyze.c:273:13: warning: 'anal_ee' defined but not used [-Wunused-function] static real anal_ee(real *parm,real T,real t) ^~~~~~~ In file included from ../../../src/tools/gmx_analyze.c:48: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_analyze.c:47: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_analyze.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_analyze.c:41: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nsc.lo ../../../src/tools/nsc.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/nsc.c -fPIC -DPIC -o .libs/nsc.o ../../../src/tools/nsc.c: In function 'make_unsp': ../../../src/tools/nsc.c:446:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (xpunsp) free(xpunsp); if (ico_wk) free(ico_wk); ^~ ../../../src/tools/nsc.c:446:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (xpunsp) free(xpunsp); if (ico_wk) free(ico_wk); ^~ ../../../src/tools/nsc.c: In function 'nsc_dclm_pbc': ../../../src/tools/nsc.c:652:21: warning: unused variable 'm' [-Wunused-variable] int ix,iy,iz,m; ^ ../../../src/tools/nsc.c:551:16: warning: unused variable 'jat_xx' [-Wunused-variable] int iat_xx,jat_xx; ^~~~~~ In file included from ../../../src/tools/nsc.c:48: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/nsc.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_covar.lo ../../../src/tools/gmx_covar.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_covar.c -fPIC -DPIC -o .libs/gmx_covar.o ../../../src/tools/gmx_covar.c: In function 'gmx_covar': ../../../src/tools/gmx_covar.c:120:30: warning: unused variable 'count' [-Wunused-variable] int natoms,nat,ndim,count,nframes0,nframes,nlevels; ^~~~~ ../../../src/tools/gmx_covar.c:119:24: warning: unused variable 'step' [-Wunused-variable] int ntopatoms,step; ^~~~ ../../../src/tools/gmx_covar.c:119:14: warning: unused variable 'ntopatoms' [-Wunused-variable] int ntopatoms,step; ^~~~~~~~~ ../../../src/tools/gmx_covar.c:109:21: warning: unused variable 'trjout' [-Wunused-variable] int status,trjout; ^~~~~~ In file included from ../../../src/tools/gmx_covar.c:50: At top level: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_covar.c:48: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_covar.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_covar.c:43: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_confrms.lo ../../../src/tools/gmx_confrms.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_confrms.c -fPIC -DPIC -o .libs/gmx_confrms.o ../../../src/tools/gmx_confrms.c: In function 'find_matching_names': ../../../src/tools/gmx_confrms.c:252:35: warning: unused variable 'atnm2' [-Wunused-variable] char *resnm1, *resnm2, *atnm1, *atnm2; ^~~~~ ../../../src/tools/gmx_confrms.c:252:27: warning: unused variable 'atnm1' [-Wunused-variable] char *resnm1, *resnm2, *atnm1, *atnm2; ^~~~~ ../../../src/tools/gmx_confrms.c:252:18: warning: unused variable 'resnm2' [-Wunused-variable] char *resnm1, *resnm2, *atnm1, *atnm2; ^~~~~~ ../../../src/tools/gmx_confrms.c:252:9: warning: unused variable 'resnm1' [-Wunused-variable] char *resnm1, *resnm2, *atnm1, *atnm2; ^~~~~~ ../../../src/tools/gmx_confrms.c:249:7: warning: unused variable 'r' [-Wunused-variable] int r,rnr1, rnr2, prnr1, prnr2; ^ ../../../src/tools/gmx_confrms.c:247:7: warning: unused variable 'i' [-Wunused-variable] int i, i1, i2, ii1, ii2, m1, m2; ^ ../../../src/tools/gmx_confrms.c: In function 'gmx_confrms': ../../../src/tools/gmx_confrms.c:407:17: warning: unused variable 'tmas2' [-Wunused-variable] real tmas1,tmas2; ^~~~~ ../../../src/tools/gmx_confrms.c:407:11: warning: unused variable 'tmas1' [-Wunused-variable] real tmas1,tmas2; ^~~~~ ../../../src/tools/gmx_confrms.c:404:13: warning: unused variable 'j' [-Wunused-variable] int i,j,m; ^ In file included from ../../../src/tools/gmx_confrms.c:56: At top level: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/tools/gmx_confrms.c:50: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_confrms.c:50: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_confrms.c:47: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_confrms.c:46: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_anaeig.lo ../../../src/tools/gmx_anaeig.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_anaeig.c -fPIC -DPIC -o .libs/gmx_anaeig.o ../../../src/tools/gmx_anaeig.c: In function 'calc_entropy_schlitter': ../../../src/tools/gmx_anaeig.c:98:10: warning: unused variable 'buf' [-Wunused-variable] char buf[256]; ^~~ ../../../src/tools/gmx_anaeig.c:97:16: warning: unused variable 'm' [-Wunused-variable] int i,j,k,m; ^ ../../../src/tools/gmx_anaeig.c:97:14: warning: unused variable 'k' [-Wunused-variable] int i,j,k,m; ^ ../../../src/tools/gmx_anaeig.c:97:12: warning: unused variable 'j' [-Wunused-variable] int i,j,k,m; ^ ../../../src/tools/gmx_anaeig.c:96:11: warning: unused variable 'indx' [-Wunused-variable] int *indx; ^~~~ ../../../src/tools/gmx_anaeig.c: In function 'compare': ../../../src/tools/gmx_anaeig.c:224:12: warning: unused variable 'nrow' [-Wunused-variable] int n,nrow; ^~~~ ../../../src/tools/gmx_anaeig.c: In function 'rmsf': ../../../src/tools/gmx_anaeig.c:692:9: warning: unused variable 'nrow' [-Wunused-variable] int nrow,g,v,i; ^~~~ ../../../src/tools/gmx_anaeig.c: In function 'gmx_anaeig': ../../../src/tools/gmx_anaeig.c:1015:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (i!=natoms) ^~ ../../../src/tools/gmx_anaeig.c:1017:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' printf("\n"); ^~~~~~ ../../../src/tools/gmx_anaeig.c:835:21: warning: unused variable 'step' [-Wunused-variable] int natoms,step; ^~~~ ../../../src/tools/gmx_anaeig.c:834:42: warning: unused variable 'lambda' [-Wunused-variable] real xid,totmass,*sqrtm,*w_rls,t,lambda; ^~~~~~ ../../../src/tools/gmx_anaeig.c:834:14: warning: unused variable 'xid' [-Wunused-variable] real xid,totmass,*sqrtm,*w_rls,t,lambda; ^~~ ../../../src/tools/gmx_anaeig.c:832:18: warning: unused variable 'xread' [-Wunused-variable] rvec *x,*xread,*xav1,*xav2,**eigvec1=NULL,**eigvec2=NULL; ^~~~~ ../../../src/tools/gmx_anaeig.c:832:15: warning: unused variable 'x' [-Wunused-variable] rvec *x,*xread,*xav1,*xav2,**eigvec1=NULL,**eigvec2=NULL; ^ ../../../src/tools/gmx_anaeig.c:825:21: warning: unused variable 'trjout' [-Wunused-variable] int status,trjout; ^~~~~~ ../../../src/tools/gmx_anaeig.c:825:14: warning: unused variable 'status' [-Wunused-variable] int status,trjout; ^~~~~~ ../../../src/tools/gmx_anaeig.c:824:15: warning: unused variable 'out' [-Wunused-variable] FILE *out; ^~~ In file included from ../../../src/tools/gmx_anaeig.c:53: At top level: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ In file included from ../../../src/tools/gmx_anaeig.c:49: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_anaeig.c:47: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_anaeig.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_anaeig.c:41: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_density.lo ../../../src/tools/gmx_density.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_density.c -fPIC -DPIC -o .libs/gmx_density.o ../../../src/tools/gmx_density.c: In function 'calc_density': ../../../src/tools/gmx_density.c:261:9: warning: unused variable 'buf' [-Wunused-variable] char *buf; /* for tmp. keeping atomname */ ^~~ ../../../src/tools/gmx_density.c:254:9: warning: unused variable 'j' [-Wunused-variable] i,j,n, /* loop indices */ ^ ../../../src/tools/gmx_density.c:253:9: warning: unused variable 'slCount' [-Wunused-variable] **slCount, /* nr. of atoms in one slice for a group */ ^~~~~~~ In file included from ../../../src/tools/gmx_density.c:52: At top level: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_density.c:49: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_density.c:49: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/tools/gmx_density.c:48: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_current.lo ../../../src/tools/gmx_current.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_current.c -fPIC -DPIC -o .libs/gmx_current.o ../../../src/tools/gmx_current.c: In function 'calc_mjdsp': ../../../src/tools/gmx_current.c:266:7: warning: unused variable 'rfr' [-Wunused-variable] real rfr; ^~~ ../../../src/tools/gmx_current.c:265:8: warning: unused variable 'rtmp' [-Wunused-variable] real rtmp; ^~~~ ../../../src/tools/gmx_current.c: In function 'dielectric': ../../../src/tools/gmx_current.c:338:8: warning: variable 'rest' set but not used [-Wunused-but-set-variable] real rest=0.0; ^~~~ ../../../src/tools/gmx_current.c:326:8: warning: unused variable 'qtmp' [-Wunused-variable] real qtmp; ^~~~ ../../../src/tools/gmx_current.c:308:13: warning: unused variable 'dm_d' [-Wunused-variable] real dm_s,dm_d; ^~~~ ../../../src/tools/gmx_current.c:308:8: warning: unused variable 'dm_s' [-Wunused-variable] real dm_s,dm_d; ^~~~ ../../../src/tools/gmx_current.c:298:8: warning: unused variable 'rfr' [-Wunused-variable] real rfr=0.0; ^~~ ../../../src/tools/gmx_current.c:293:33: warning: variable 'itrust' set but not used [-Wunused-but-set-variable] int valloc,nalloc,nfr,nvfr,m,itrust=0; ^~~~~~ ../../../src/tools/gmx_current.c:293:31: warning: unused variable 'm' [-Wunused-variable] int valloc,nalloc,nfr,nvfr,m,itrust=0; ^ ../../../src/tools/gmx_current.c:292:17: warning: unused variable 'f' [-Wunused-variable] int i,j,k,l,f; ^ ../../../src/tools/gmx_current.c:292:15: warning: unused variable 'l' [-Wunused-variable] int i,j,k,l,f; ^ ../../../src/tools/gmx_current.c:292:13: warning: unused variable 'k' [-Wunused-variable] int i,j,k,l,f; ^ ../../../src/tools/gmx_current.c: In function 'gmx_current': ../../../src/tools/gmx_current.c:720:15: warning: unused variable 'tfile' [-Wunused-variable] FILE *tfile=NULL; ^~~~~ ../../../src/tools/gmx_current.c:719:15: warning: unused variable 'outi' [-Wunused-variable] FILE *outi=NULL; ^~~~ ../../../src/tools/gmx_current.c:716:14: warning: unused variable 'lambda' [-Wunused-variable] real lambda; ^~~~~~ ../../../src/tools/gmx_current.c:715:13: warning: unused variable 't' [-Wunused-variable] real t; ^ ../../../src/tools/gmx_current.c:714:14: warning: unused variable 'step' [-Wunused-variable] int step; ^~~~ ../../../src/tools/gmx_current.c:713:21: warning: unused variable 'l' [-Wunused-variable] int i,j,k=0,l; ^ ../../../src/tools/gmx_current.c:713:17: warning: unused variable 'k' [-Wunused-variable] int i,j,k=0,l; ^ ../../../src/tools/gmx_current.c:713:15: warning: unused variable 'j' [-Wunused-variable] int i,j,k=0,l; ^ ../../../src/tools/gmx_current.c:711:12: warning: unused variable 'natoms' [-Wunused-variable] int natoms; ^~~~~~ ../../../src/tools/gmx_current.c:707:10: warning: variable 'bNEU' set but not used [-Wunused-but-set-variable] bool bNEU; ^~~~ ../../../src/tools/gmx_current.c:706:13: warning: variable 'bTop' set but not used [-Wunused-but-set-variable] bool bTop; ^~~~ In file included from ../../../src/tools/gmx_current.c:44: At top level: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_current.c:43: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_current.c:43: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_current.c:40: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_chi.lo ../../../src/tools/gmx_chi.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_chi.c -fPIC -DPIC -o .libs/gmx_chi.o ../../../src/tools/gmx_chi.c: In function 'histogramming': ../../../src/tools/gmx_chi.c:418:23: warning: unused variable 'his_aa1' [-Wunused-variable] int ***his_aa,**his_aa1,*histmp; ^~~~~~~ ../../../src/tools/gmx_chi.c: In function 'print_transitions': ../../../src/tools/gmx_chi.c:834:8: warning: variable 'nh' set but not used [-Wunused-but-set-variable] int nh[edMax]; ^~ ../../../src/tools/gmx_chi.c: In function 'gmx_chi': ../../../src/tools/gmx_chi.c:1098:16: warning: unused variable 'j' [-Wunused-variable] int i,j,**chi_lookup,*xity; ^ In file included from ../../../src/tools/gmx_chi.c:59: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../src/tools/gmx_chi.c:49: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/tools/gmx_chi.c:47: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_chi.c:44: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_chi.c:43: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../src/tools/gmx_chi.c: In function 'histogramming.isra.1': ../../../src/tools/gmx_chi.c:657:30: warning: '.xvg' directive writing 4 bytes into a region of size between 0 and 255 [-Wformat-overflow=] sprintf(sshisfile,"%s-%s.xvg",hisfile,sss[k]); ^~~~ In file included from /usr/include/stdio.h:862, from ../../../src/tools/gmx_chi.c:39: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 6 or more bytes (assuming 261) into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_densmap.lo ../../../src/tools/gmx_densmap.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_densmap.c -fPIC -DPIC -o .libs/gmx_densmap.o In file included from ../../../src/tools/gmx_densmap.c:50: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_densmap.c:48: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_densmap.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_densmap.c:43: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_dih.lo ../../../src/tools/gmx_dih.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_dih.c -fPIC -DPIC -o .libs/gmx_dih.o ../../../src/tools/gmx_dih.c:55:13: warning: 'dump_dih' defined but not used [-Wunused-function] static void dump_dih(int nframes,char *title,real time[],real dih[]) ^~~~~~~~ In file included from ../../../src/tools/gmx_dih.c:51: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_dih.c:51: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_dih.c:46: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_dih.c:43: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ ../../../src/tools/gmx_dih.c: In function 'gmx_dih': ../../../src/tools/gmx_dih.c:265:22: warning: '%d' directive writing between 1 and 10 bytes into a region of size 6 [-Wformat-overflow=] sprintf(buf,"dih-%d",i); ^~ ../../../src/tools/gmx_dih.c:265:17: note: directive argument in the range [0, 2147483647] sprintf(buf,"dih-%d",i); ^~~~~~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../src/tools/gmx_dih.c:41: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 6 and 15 bytes into a destination of size 10 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_dielectric.lo ../../../src/tools/gmx_dielectric.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_dielectric.c -fPIC -DPIC -o .libs/gmx_dielectric.o ../../../src/tools/gmx_dielectric.c: In function 'calc_nbegin': ../../../src/tools/gmx_dielectric.c:60:11: warning: unused variable 'dtt' [-Wunused-variable] real dt,dtt; ^~~ ../../../src/tools/gmx_dielectric.c:60:8: warning: unused variable 'dt' [-Wunused-variable] real dt,dtt; ^~ In file included from ../../../src/tools/gmx_dielectric.c:53: At top level: ../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function] static t_complex csub(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function] static t_complex cadd(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function] static t_complex rcexp(real r) ^~~~~ ../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable] static t_complex cnul = { 0.0, 0.0 }; ^~~~ In file included from ../../../src/tools/gmx_dielectric.c:51: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/tools/gmx_dielectric.c:47: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_dielectric.c:44: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_spatial.lo ../../../src/tools/gmx_spatial.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_spatial.c -fPIC -DPIC -o .libs/gmx_spatial.o ../../../src/tools/gmx_spatial.c: In function 'gmx_spatial': ../../../src/tools/gmx_spatial.c:131:21: warning: unused variable 'shx' [-Wunused-variable] rvec *xtop,*shx[26]; ^~~ ../../../src/tools/gmx_spatial.c:103:15: warning: unused variable 'bSHIFT' [-Wunused-variable] static bool bSHIFT=FALSE; ^~~~~~ At top level: ../../../src/tools/gmx_spatial.c:103:15: warning: 'bSHIFT' defined but not used [-Wunused-variable] In file included from ../../../src/tools/gmx_spatial.c:44: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_spatial.c:43: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_spatial.c:43: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_spatial.c:40: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ ../../../src/tools/gmx_spatial.c:38:14: warning: 'SRCID_template_c' defined but not used [-Wunused-variable] static char *SRCID_template_c = "$Id$"; ^~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_cluster.lo ../../../src/tools/gmx_cluster.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_cluster.c -fPIC -DPIC -o .libs/gmx_cluster.o ../../../src/tools/gmx_cluster.c: In function 'mark_clusters': ../../../src/tools/gmx_cluster.c:638:11: warning: unused variable 'v' [-Wunused-variable] int i,j,v; ^ ../../../src/tools/gmx_cluster.c: In function 'gmx_cluster': ../../../src/tools/gmx_cluster.c:1341:7: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(i=0; (ipdbinfo[ii0].pdbresnr,"%d",r0+1); ^~ ../../../src/tools/gmx_sas.c:152:44: note: directive argument in the range [-2147483647, 2147483647] sprintf(atoms->pdbinfo[ii0].pdbresnr,"%d",r0+1); ^~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../src/tools/gmx_sas.c:42: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 2 and 12 bytes into a destination of size 6 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_rdf.lo ../../../src/tools/gmx_rdf.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_rdf.c -fPIC -DPIC -o .libs/gmx_rdf.o ../../../src/tools/gmx_rdf.c: In function 'do_rdf': ../../../src/tools/gmx_rdf.c:168:23: warning: unused variable 'index_cm' [-Wunused-variable] atom_id **index,*index_cm=NULL; ^~~~~~~~ ../../../src/tools/gmx_rdf.c:167:21: warning: unused variable 'isize_cm' [-Wunused-variable] int *isize,isize_cm=0,nrdf=0,max_i,isize0,isize_g; ^~~~~~~~ ../../../src/tools/gmx_rdf.c:164:40: warning: unused variable 'n' [-Wunused-variable] int g,natoms,i,j,k,nbin,j0,j1,n,nframes; ^ ../../../src/tools/gmx_rdf.c:164:37: warning: unused variable 'j1' [-Wunused-variable] int g,natoms,i,j,k,nbin,j0,j1,n,nframes; ^~ ../../../src/tools/gmx_rdf.c:164:34: warning: unused variable 'j0' [-Wunused-variable] int g,natoms,i,j,k,nbin,j0,j1,n,nframes; ^~ ../../../src/tools/gmx_rdf.c:162:28: warning: unused variable 'outf2' [-Wunused-variable] char outf1[STRLEN],outf2[STRLEN]; ^~~~~ ../../../src/tools/gmx_rdf.c:162:14: warning: unused variable 'outf1' [-Wunused-variable] char outf1[STRLEN],outf2[STRLEN]; ^~~~~ In file included from ../../../include/fftgrid.h:46, from ../../../src/tools/gmx_rdf.c:57: At top level: ../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function] static t_complex cdiv(t_complex teller,t_complex noemer) ^~~~ ../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function] static t_complex csub(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function] static t_complex cadd(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function] static t_complex rcexp(real r) ^~~~~ ../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable] static t_complex cnul = { 0.0, 0.0 }; ^~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_rdf.c:52: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_rdf.c:50: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_rdf.c:47: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_rdf.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_rms.lo ../../../src/tools/gmx_rms.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_rms.c -fPIC -DPIC -o .libs/gmx_rms.o In file included from ../../../src/tools/gmx_rms.c:49: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_rms.c:49: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_rms.c:47: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_rms.c:46: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_sgangle.lo ../../../src/tools/gmx_sgangle.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_sgangle.c -fPIC -DPIC -o .libs/gmx_sgangle.o In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_sgangle.c:52: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_sgangle.c:50: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_sgangle.c:47: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_sgangle.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_sorient.lo ../../../src/tools/gmx_sorient.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_sorient.c -fPIC -DPIC -o .libs/gmx_sorient.o ../../../src/tools/gmx_sorient.c: In function 'gmx_sorient': ../../../src/tools/gmx_sorient.c:114:72: warning: unused variable 'mtot' [-Wunused-variable] real inp,outp,two_pi,nav,normfac,rmin2,rmax2,rcut,rcut2,r2,r,mass,mtot; ^~~~ ../../../src/tools/gmx_sorient.c:114:67: warning: unused variable 'mass' [-Wunused-variable] real inp,outp,two_pi,nav,normfac,rmin2,rmax2,rcut,rcut2,r2,r,mass,mtot; ^~~~ ../../../src/tools/gmx_sorient.c:114:20: warning: variable 'two_pi' set but not used [-Wunused-but-set-variable] real inp,outp,two_pi,nav,normfac,rmin2,rmax2,rcut,rcut2,r2,r,mass,mtot; ^~~~~~ ../../../src/tools/gmx_sorient.c:108:13: warning: unused variable 'j' [-Wunused-variable] int i,j,p,sa0,sa1,sa2,n,ntot,nf,m,*hist1,*hist2,*histn,nbin1,nbin2,nrbin; ^ In file included from ../../../src/tools/gmx_sorient.c:45: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_sorient.c:45: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/tools/gmx_sorient.c:43: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_sorient.c:41: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_sdf.lo ../../../src/tools/gmx_sdf.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_sdf.c -fPIC -DPIC -o .libs/gmx_sdf.o ../../../src/tools/gmx_sdf.c: In function 'do_sdf': ../../../src/tools/gmx_sdf.c:101:25: warning: unused variable 'bRefDone' [-Wunused-variable] bool bTop=FALSE,bRefDone=FALSE,bInGroup=FALSE; ^~~~~~~~ ../../../src/tools/gmx_sdf.c:97:17: warning: unused variable 'jx' [-Wunused-variable] atom_id ix,jx; ^~ ../../../src/tools/gmx_sdf.c:97:14: warning: unused variable 'ix' [-Wunused-variable] atom_id ix,jx; ^~ ../../../src/tools/gmx_sdf.c:92:17: warning: unused variable 'xcog' [-Wunused-variable] rvec *x,xcog,dx,*x_i1,xi,*x_refmol; ^~~~ ../../../src/tools/gmx_sdf.c:89:23: warning: variable 'hbox' set but not used [-Wunused-but-set-variable] real t,boxmin,hbox,normfac; ^~~~ ../../../src/tools/gmx_sdf.c:88:15: warning: unused variable 'index_ref' [-Wunused-variable] atom_id *index_ref=NULL; ^~~~~~~~~ ../../../src/tools/gmx_sdf.c:87:15: warning: unused variable 'index_cg' [-Wunused-variable] atom_id *index_cg=NULL; ^~~~~~~~ ../../../src/tools/gmx_sdf.c:85:24: warning: unused variable 'refc' [-Wunused-variable] int nrefmol=0,refc=0; ^~~~ ../../../src/tools/gmx_sdf.c:83:14: warning: unused variable 'isize_ref' [-Wunused-variable] int isize_ref=3; ^~~~~~~~~ ../../../src/tools/gmx_sdf.c:82:14: warning: unused variable 'isize_cg' [-Wunused-variable] int isize_cg=0; ^~~~~~~~ ../../../src/tools/gmx_sdf.c:75:41: warning: unused variable 'dest' [-Wunused-variable] int ng,natoms,i,j,k,l,X,Y,Z,lc,dest; ^~~~ ../../../src/tools/gmx_sdf.c:75:38: warning: unused variable 'lc' [-Wunused-variable] int ng,natoms,i,j,k,l,X,Y,Z,lc,dest; ^~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_sdf.c:33: At top level: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_sdf.c:31: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_sdf.c:28: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_sdf.c:28: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ ../../../src/tools/gmx_sdf.c:20:14: warning: 'SRCID_template_c' defined but not used [-Wunused-variable] static char *SRCID_template_c = "$Id$"; ^~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_spol.lo ../../../src/tools/gmx_spol.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_spol.c -fPIC -DPIC -o .libs/gmx_spol.o ../../../src/tools/gmx_spol.c: In function 'gmx_spol': ../../../src/tools/gmx_spol.c:165:28: warning: unused variable 'bPBC' [-Wunused-variable] static bool bCom = FALSE,bPBC = FALSE; ^~~~ ../../../src/tools/gmx_spol.c:131:13: warning: unused variable 'xtop' [-Wunused-variable] rvec *xtop,*x,xref,try,dx,dip,dir; ^~~~ ../../../src/tools/gmx_spol.c:127:12: warning: unused variable 'title' [-Wunused-variable] char title[STRLEN]; ^~~~~ At top level: ../../../src/tools/gmx_spol.c:165:28: warning: 'bPBC' defined but not used [-Wunused-variable] static bool bCom = FALSE,bPBC = FALSE; ^~~~ In file included from ../../../src/tools/gmx_spol.c:45: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_spol.c:45: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/tools/gmx_spol.c:43: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_spol.c:41: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_hbond.lo ../../../src/tools/gmx_hbond.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_hbond.c -fPIC -DPIC -o .libs/gmx_hbond.o ../../../src/tools/gmx_hbond.c: In function 'mk_hbmap': ../../../src/tools/gmx_hbond.c:182:10: warning: unused variable 'j' [-Wunused-variable] int i,j; ^ ../../../src/tools/gmx_hbond.c: In function 'add_frames': ../../../src/tools/gmx_hbond.c:194:14: warning: unused variable 'l' [-Wunused-variable] int i,j,k,l; ^ ../../../src/tools/gmx_hbond.c:194:12: warning: unused variable 'k' [-Wunused-variable] int i,j,k,l; ^ ../../../src/tools/gmx_hbond.c:194:10: warning: unused variable 'j' [-Wunused-variable] int i,j,k,l; ^ ../../../src/tools/gmx_hbond.c:194:8: warning: unused variable 'i' [-Wunused-variable] int i,j,k,l; ^ ../../../src/tools/gmx_hbond.c: In function 'search_donors': ../../../src/tools/gmx_hbond.c:543:14: warning: unused variable 'stop' [-Wunused-variable] bool stop; ^~~~ ../../../src/tools/gmx_hbond.c:539:22: warning: unused variable 'n' [-Wunused-variable] int i,j,nra,n; ^ ../../../src/tools/gmx_hbond.c:539:18: warning: unused variable 'nra' [-Wunused-variable] int i,j,nra,n; ^~~ ../../../src/tools/gmx_hbond.c: In function 'is_hbond': ../../../src/tools/gmx_hbond.c:900:19: warning: unused variable 'ihb' [-Wunused-variable] int h,hh,id,ja,ihb; ^~~ ../../../src/tools/gmx_hbond.c: In function 'merge_hb': ../../../src/tools/gmx_hbond.c:1021:44: warning: unused variable 'ogrp' [-Wunused-variable] int i,inrnew,indnew,j,ii,jj,m,id,ia,grp,ogrp,ntmp; ^~~~ ../../../src/tools/gmx_hbond.c:1021:40: warning: unused variable 'grp' [-Wunused-variable] int i,inrnew,indnew,j,ii,jj,m,id,ia,grp,ogrp,ntmp; ^~~ ../../../src/tools/gmx_hbond.c:1021:32: warning: unused variable 'm' [-Wunused-variable] int i,inrnew,indnew,j,ii,jj,m,id,ia,grp,ogrp,ntmp; ^ ../../../src/tools/gmx_hbond.c: In function 'do_nhb_dist': ../../../src/tools/gmx_hbond.c:1077:8: warning: unused variable 'nhb' [-Wunused-variable] h_id nhb; ^~~ ../../../src/tools/gmx_hbond.c: In function 'smooth_tail': ../../../src/tools/gmx_hbond.c:1439:9: warning: unused variable 'fp' [-Wunused-variable] FILE *fp; ^~ ../../../src/tools/gmx_hbond.c: In function 'analyse_corr': ../../../src/tools/gmx_hbond.c:1461:56: warning: unused variable 'dt' [-Wunused-variable] real Q=0,chi22,chi2,dg,dgp,tau_hb,dtau,tau_rlx,e_1,dt,sigma_k,sigma_kp,ddg; ^~ ../../../src/tools/gmx_hbond.c:1461:28: warning: unused variable 'dgp' [-Wunused-variable] real Q=0,chi22,chi2,dg,dgp,tau_hb,dtau,tau_rlx,e_1,dt,sigma_k,sigma_kp,ddg; ^~~ ../../../src/tools/gmx_hbond.c:1461:25: warning: unused variable 'dg' [-Wunused-variable] real Q=0,chi22,chi2,dg,dgp,tau_hb,dtau,tau_rlx,e_1,dt,sigma_k,sigma_kp,ddg; ^~ ../../../src/tools/gmx_hbond.c:1461:14: warning: variable 'chi22' set but not used [-Wunused-but-set-variable] real Q=0,chi22,chi2,dg,dgp,tau_hb,dtau,tau_rlx,e_1,dt,sigma_k,sigma_kp,ddg; ^~~~~ ../../../src/tools/gmx_hbond.c: In function 'do_hbac': ../../../src/tools/gmx_hbond.c:1585:27: warning: variable 'ngh' set but not used [-Wunused-but-set-variable] int nh,nhbonds,nhydro,ngh; ^~~ ../../../src/tools/gmx_hbond.c:1577:18: warning: unused variable 'nd' [-Wunused-variable] int i,j,k,m,n,nd,ihb,idist,n2,nn; ^~ ../../../src/tools/gmx_hbond.c:1577:16: warning: unused variable 'n' [-Wunused-variable] int i,j,k,m,n,nd,ihb,idist,n2,nn; ^ ../../../src/tools/gmx_hbond.c: In function 'gmx_hbond': ../../../src/tools/gmx_hbond.c:2051:30: warning: unused variable 'bin' [-Wunused-variable] int grp,nabin,nrbin,bin,resdist,ihb; ^~~ ../../../src/tools/gmx_hbond.c:2049:43: warning: unused variable 'was' [-Wunused-variable] bool bSelected,bHBmap,bStop,bTwo,new,was,bBox,bTric; ^~~ ../../../src/tools/gmx_hbond.c:2049:39: warning: unused variable 'new' [-Wunused-variable] bool bSelected,bHBmap,bStop,bTwo,new,was,bBox,bTric; ^~~ ../../../src/tools/gmx_hbond.c:2045:34: warning: unused variable 'ja' [-Wunused-variable] int h,i,j,k,l,start,end,id,ja,ogrp,nsel; ^~ ../../../src/tools/gmx_hbond.c:2045:31: warning: unused variable 'id' [-Wunused-variable] int h,i,j,k,l,start,end,id,ja,ogrp,nsel; ^~ ../../../src/tools/gmx_hbond.c:2045:27: warning: unused variable 'end' [-Wunused-variable] int h,i,j,k,l,start,end,id,ja,ogrp,nsel; ^~~ ../../../src/tools/gmx_hbond.c:2045:21: warning: unused variable 'start' [-Wunused-variable] int h,i,j,k,l,start,end,id,ja,ogrp,nsel; ^~~~~ ../../../src/tools/gmx_hbond.c:2045:19: warning: unused variable 'l' [-Wunused-variable] int h,i,j,k,l,start,end,id,ja,ogrp,nsel; ^ At top level: ../../../src/tools/gmx_hbond.c:372:13: warning: 'in_list' defined but not used [-Wunused-function] static bool in_list(atom_id selection,int isize,atom_id *index) ^~~~~~~ In file included from ../../../include/gmx_fft.h:41, from ../../../src/tools/correl.h:40, from ../../../src/tools/gmx_hbond.c:59: ../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function] static t_complex cdiv(t_complex teller,t_complex noemer) ^~~~ ../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function] static t_complex csub(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function] static t_complex cadd(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function] static t_complex rcexp(real r) ^~~~~ ../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable] static t_complex cnul = { 0.0, 0.0 }; ^~~~ In file included from ../../../src/tools/gmx_hbond.c:53: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_hbond.c:53: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/tools/gmx_hbond.c:43: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_hbond.c:42: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_tcaf.lo ../../../src/tools/gmx_tcaf.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_tcaf.c -fPIC -DPIC -o .libs/gmx_tcaf.o ../../../src/tools/gmx_tcaf.c: In function 'gmx_tcaf': ../../../src/tools/gmx_tcaf.c:274:16: warning: unused variable 'c1' [-Wunused-variable] real **c1,**tc; ^~ ../../../src/tools/gmx_tcaf.c:265:14: warning: unused variable 'bTPS' [-Wunused-variable] bool bTPS,bTop; /* ,bCubic; */ ^~~~ In file included from ../../../src/tools/gmx_tcaf.c:57: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../src/tools/gmx_tcaf.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/tools/gmx_tcaf.c:46: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_tcaf.c:43: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_velacc.lo ../../../src/tools/gmx_velacc.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_velacc.c -fPIC -DPIC -o .libs/gmx_velacc.o In file included from ../../../src/tools/gmx_velacc.c:57: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../src/tools/gmx_velacc.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/tools/gmx_velacc.c:46: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_velacc.c:43: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o correl.lo ../../../src/tools/correl.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/correl.c -fPIC -DPIC -o .libs/correl.o ../../../src/tools/correl.c: In function 'complex_mult': ../../../src/tools/correl.c:189:10: warning: unused variable 'no2' [-Wunused-variable] int i,no2,n_2,k; ^~~ In file included from ../../../include/gmx_fft.h:41, from ../../../src/tools/correl.c:43: At top level: ../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function] static t_complex cdiv(t_complex teller,t_complex noemer) ^~~~ ../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function] static t_complex csub(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function] static t_complex cadd(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function] static t_complex rcexp(real r) ^~~~~ ../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable] static t_complex cnul = { 0.0, 0.0 }; ^~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_mdmat.lo ../../../src/tools/gmx_mdmat.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_mdmat.c -fPIC -DPIC -o .libs/gmx_mdmat.o ../../../src/tools/gmx_mdmat.c: In function 'gmx_mdmat': ../../../src/tools/gmx_mdmat.c:193:14: warning: unused variable 'nr0' [-Wunused-variable] int nr0; ^~~ ../../../src/tools/gmx_mdmat.c:192:45: warning: unused variable 'it' [-Wunused-variable] int i,j,status,nres,natoms,nframes,it,trxnat; ^~ ../../../src/tools/gmx_mdmat.c:165:15: warning: unused variable 'bAtom' [-Wunused-variable] static bool bAtom=FALSE; ^~~~~ At top level: ../../../src/tools/gmx_mdmat.c:165:15: warning: 'bAtom' defined but not used [-Wunused-variable] In file included from ../../../src/tools/gmx_mdmat.c:49: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_mdmat.c:48: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_mdmat.c:44: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_mdmat.c:44: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_clustsize.lo ../../../src/tools/gmx_clustsize.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_clustsize.c -fPIC -DPIC -o .libs/gmx_clustsize.o ../../../src/tools/gmx_clustsize.c: In function 'clust_size': ../../../src/tools/gmx_clustsize.c:94:50: warning: unused variable 'n_y' [-Wunused-variable] int i,j,k,ai,aj,ak,ci,cj,nframe,nclust,n_x,n_y,max_size=0; ^~~ ../../../src/tools/gmx_clustsize.c:94:23: warning: unused variable 'ak' [-Wunused-variable] int i,j,k,ai,aj,ak,ci,cj,nframe,nclust,n_x,n_y,max_size=0; ^~ ../../../src/tools/gmx_clustsize.c:89:40: warning: unused variable 'nsame' [-Wunused-variable] int version,generation,sss,ii,jj,nsame; ^~~~~ ../../../src/tools/gmx_clustsize.c: In function 'gmx_clustsize': ../../../src/tools/gmx_clustsize.c:396:18: warning: unused variable 'bRDF' [-Wunused-variable] bool bSQ,bRDF; ^~~~ ../../../src/tools/gmx_clustsize.c:396:14: warning: unused variable 'bSQ' [-Wunused-variable] bool bSQ,bRDF; ^~~ In file included from ../../../include/pme.h:46, from ../../../src/tools/gmx_clustsize.c:62: At top level: ../../../include/gmxcomplex.h:115:18: warning: 'cdiv' defined but not used [-Wunused-function] static t_complex cdiv(t_complex teller,t_complex noemer) ^~~~ ../../../include/gmxcomplex.h:85:18: warning: 'csub' defined but not used [-Wunused-function] static t_complex csub(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:75:18: warning: 'cadd' defined but not used [-Wunused-function] static t_complex cadd(t_complex a,t_complex b) ^~~~ ../../../include/gmxcomplex.h:64:18: warning: 'rcexp' defined but not used [-Wunused-function] static t_complex rcexp(real r) ^~~~~ ../../../include/gmxcomplex.h:52:18: warning: 'cnul' defined but not used [-Wunused-variable] static t_complex cnul = { 0.0, 0.0 }; ^~~~ In file included from ../../../src/tools/gmx_clustsize.c:52: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_clustsize.c:50: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_clustsize.c:47: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_clustsize.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_helixorient.lo ../../../src/tools/gmx_helixorient.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_helixorient.c -fPIC -DPIC -o .libs/gmx_helixorient.o ../../../src/tools/gmx_helixorient.c: In function 'gmx_helixorient': ../../../src/tools/gmx_helixorient.c:125:14: warning: unused variable 'rotangle' [-Wunused-variable] real tmp,rotangle; ^~~~~~~~ ../../../src/tools/gmx_helixorient.c:107:10: warning: unused variable 'axes' [-Wunused-variable] rvec axes[3]; ^~~~ ../../../src/tools/gmx_helixorient.c:106:10: warning: unused variable 'axes_t0' [-Wunused-variable] rvec axes_t0[3]; ^~~~~~~ ../../../src/tools/gmx_helixorient.c:93:27: warning: unused variable 'vproj' [-Wunused-variable] rvec v1,v2,p1,p2,vtmp,vproj; ^~~~~ ../../../src/tools/gmx_helixorient.c:93:22: warning: unused variable 'vtmp' [-Wunused-variable] rvec v1,v2,p1,p2,vtmp,vproj; ^~~~ ../../../src/tools/gmx_helixorient.c:93:19: warning: unused variable 'p2' [-Wunused-variable] rvec v1,v2,p1,p2,vtmp,vproj; ^~ ../../../src/tools/gmx_helixorient.c:93:16: warning: unused variable 'p1' [-Wunused-variable] rvec v1,v2,p1,p2,vtmp,vproj; ^~ ../../../src/tools/gmx_helixorient.c:92:10: warning: unused variable 'averageaxis' [-Wunused-variable] rvec averageaxis; ^~~~~~~~~~~ ../../../src/tools/gmx_helixorient.c:86:9: warning: unused variable 'd' [-Wunused-variable] int d,i,j,teller=0; ^ ../../../src/tools/gmx_helixorient.c:80:18: warning: unused variable 'dx' [-Wunused-variable] rvec *x=NULL,dx; ^~ In file included from ../../../src/tools/gmx_helixorient.c:48: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_helixorient.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_helixorient.c:46: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_helixorient.c:45: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_nmtraj.lo ../../../src/tools/gmx_nmtraj.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_nmtraj.c -fPIC -DPIC -o .libs/gmx_nmtraj.o ../../../src/tools/gmx_nmtraj.c: In function 'gmx_nmtraj': ../../../src/tools/gmx_nmtraj.c:129:14: warning: variable 'dum' set but not used [-Wunused-but-set-variable] real dum; ^~~ ../../../src/tools/gmx_nmtraj.c:124:14: warning: unused variable 'found' [-Wunused-variable] bool found; ^~~~~ ../../../src/tools/gmx_nmtraj.c:123:25: warning: unused variable 'sum' [-Wunused-variable] real omega,Ekin,sum,m,vel; ^~~ ../../../src/tools/gmx_nmtraj.c:121:15: warning: unused variable 'out_eigval' [-Wunused-variable] real *out_eigval; ^~~~~~~~~~ ../../../src/tools/gmx_nmtraj.c:115:14: warning: unused variable 'neigval' [-Wunused-variable] int neigval; ^~~~~~~ ../../../src/tools/gmx_nmtraj.c:113:14: warning: unused variable 'grpname' [-Wunused-variable] char * grpname; ^~~~~~~ ../../../src/tools/gmx_nmtraj.c:111:14: warning: unused variable 'indexfile' [-Wunused-variable] char * indexfile; ^~~~~~~~~ ../../../src/tools/gmx_nmtraj.c:109:30: warning: unused variable 'v' [-Wunused-variable] int i,j,k,kmode,d,s,v; ^ ../../../src/tools/gmx_nmtraj.c:109:28: warning: unused variable 's' [-Wunused-variable] int i,j,k,kmode,d,s,v; ^ ../../../src/tools/gmx_nmtraj.c:105:15: warning: unused variable 'eigvalnr' [-Wunused-variable] int *eigvalnr; ^~~~~~~~ In file included from ../../../src/tools/gmx_nmtraj.c:54: At top level: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/tools/gmx_nmtraj.c:50: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_nmtraj.c:49: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_nmtraj.c:49: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_nmtraj.c:43: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_traj.lo ../../../src/tools/gmx_traj.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_traj.c -fPIC -DPIC -o .libs/gmx_traj.o ../../../src/tools/gmx_traj.c: In function 'write_pdb_bfac': ../../../src/tools/gmx_traj.c:337:11: warning: unused variable 'bOne' [-Wunused-variable] bool bOne; ^~~~ ../../../src/tools/gmx_traj.c: In function 'gmx_traj': ../../../src/tools/gmx_traj.c:525:18: warning: unused variable 'n' [-Wunused-variable] int i,j,n; ^ In file included from ../../../src/tools/gmx_traj.c:49: At top level: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_traj.c:47: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_traj.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_traj.c:42: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_trjorder.lo ../../../src/tools/gmx_trjorder.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_trjorder.c -fPIC -DPIC -o .libs/gmx_trjorder.o In file included from ../../../src/tools/gmx_trjorder.c:49: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_trjorder.c:47: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_trjorder.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_trjorder.c:42: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_trjcat.lo ../../../src/tools/gmx_trjcat.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_trjcat.c -fPIC -DPIC -o .libs/gmx_trjcat.o ../../../src/tools/gmx_trjcat.c: In function 'scan_trj_files': ../../../src/tools/gmx_trjcat.c:78:8: warning: unused variable 't' [-Wunused-variable] real t; ^ ../../../src/tools/gmx_trjcat.c: In function 'gmx_trjcat': ../../../src/tools/gmx_trjcat.c:392:58: warning: unused variable 'last_ok_step' [-Wunused-variable] int earliersteps,nfile_in,nfile_out,*cont_type,last_ok_step; ^~~~~~~~~~~~ ../../../src/tools/gmx_trjcat.c:388:34: warning: unused variable 'in_file' [-Wunused-variable] char **fnms,**fnms_out,*in_file,*out_file; ^~~~~~~ ../../../src/tools/gmx_trjcat.c:385:19: warning: unused variable 'v' [-Wunused-variable] rvec *x,*v; ^ ../../../src/tools/gmx_trjcat.c:385:16: warning: unused variable 'x' [-Wunused-variable] rvec *x,*v; ^ ../../../src/tools/gmx_trjcat.c:384:53: warning: unused variable 'trjout' [-Wunused-variable] int status,ftpin,i,frame,frame_out,step=0,trjout=0; ^~~~~~ ../../../src/tools/gmx_trjcat.c:384:22: warning: unused variable 'ftpin' [-Wunused-variable] int status,ftpin,i,frame,frame_out,step=0,trjout=0; ^~~~~ In file included from ../../../src/tools/gmx_trjcat.c:56: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_trjcat.c:56: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/tools/gmx_trjcat.c:52: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_trjcat.c:50: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_trjcat.c:46: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_sham.lo ../../../src/tools/gmx_sham.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_sham.c -fPIC -DPIC -o .libs/gmx_sham.o ../../../src/tools/gmx_sham.c: In function 'do_sham': ../../../src/tools/gmx_sham.c:286:32: warning: unused variable 'd' [-Wunused-variable] int i,j,k,imin,len,index,d,*nbin,*bindex,bi; ^ ../../../src/tools/gmx_sham.c: In function 'gmx_sham': ../../../src/tools/gmx_sham.c:778:41: warning: unused variable 'db' [-Wunused-variable] double *av,*sig,cum1,cum2,cum3,cum4,db; ^~ ../../../src/tools/gmx_sham.c:778:36: warning: unused variable 'cum4' [-Wunused-variable] double *av,*sig,cum1,cum2,cum3,cum4,db; ^~~~ ../../../src/tools/gmx_sham.c:778:31: warning: unused variable 'cum3' [-Wunused-variable] double *av,*sig,cum1,cum2,cum3,cum4,db; ^~~~ ../../../src/tools/gmx_sham.c:778:26: warning: unused variable 'cum2' [-Wunused-variable] double *av,*sig,cum1,cum2,cum3,cum4,db; ^~~~ ../../../src/tools/gmx_sham.c:778:21: warning: unused variable 'cum1' [-Wunused-variable] double *av,*sig,cum1,cum2,cum3,cum4,db; ^~~~ ../../../src/tools/gmx_sham.c:778:17: warning: unused variable 'sig' [-Wunused-variable] double *av,*sig,cum1,cum2,cum3,cum4,db; ^~~ ../../../src/tools/gmx_sham.c:778:13: warning: unused variable 'av' [-Wunused-variable] double *av,*sig,cum1,cum2,cum3,cum4,db; ^~ ../../../src/tools/gmx_sham.c:776:66: warning: unused variable 'error' [-Wunused-variable] real **val,**et_val,**dt_val,*t,*e_t,e_dt,d_dt,*d_t,dt,tot,error; ^~~~~ ../../../src/tools/gmx_sham.c:776:62: warning: unused variable 'tot' [-Wunused-variable] real **val,**et_val,**dt_val,*t,*e_t,e_dt,d_dt,*d_t,dt,tot,error; ^~~ ../../../src/tools/gmx_sham.c:775:51: warning: unused variable 'j' [-Wunused-variable] int n,e_n,d_n,nlast,s,nset,e_nset,d_nset,i,j=0,*idim,*ibox; ^ ../../../src/tools/gmx_sham.c:775:28: warning: unused variable 's' [-Wunused-variable] int n,e_n,d_n,nlast,s,nset,e_nset,d_nset,i,j=0,*idim,*ibox; ^ ../../../src/tools/gmx_sham.c:775:22: warning: unused variable 'nlast' [-Wunused-variable] int n,e_n,d_n,nlast,s,nset,e_nset,d_nset,i,j=0,*idim,*ibox; ^~~~~ ../../../src/tools/gmx_sham.c:774:13: warning: unused variable 'out' [-Wunused-variable] FILE *out; ^~~ ../../../src/tools/gmx_sham.c:728:35: warning: unused variable 'resol' [-Wunused-variable] static int nsets_in=1,nb_min=4,resol=10,nlevels=25; ^~~~~ ../../../src/tools/gmx_sham.c:728:26: warning: unused variable 'nb_min' [-Wunused-variable] static int nsets_in=1,nb_min=4,resol=10,nlevels=25; ^~~~~~ ../../../src/tools/gmx_sham.c:723:15: warning: unused variable 'bShamEner' [-Wunused-variable] static bool bShamEner=TRUE,bSham=TRUE; ^~~~~~~~~ ../../../src/tools/gmx_sham.c:722:56: warning: unused variable 'bPower' [-Wunused-variable] static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE; ^~~~~~ ../../../src/tools/gmx_sham.c:722:41: warning: unused variable 'bEeFitAc' [-Wunused-variable] static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE; ^~~~~~~~ ../../../src/tools/gmx_sham.c:722:28: warning: unused variable 'bEENLC' [-Wunused-variable] static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE; ^~~~~~ ../../../src/tools/gmx_sham.c:722:15: warning: unused variable 'bEESEF' [-Wunused-variable] static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE; ^~~~~~ ../../../src/tools/gmx_sham.c:721:66: warning: unused variable 'bXYdy' [-Wunused-variable] static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE; ^~~~~ ../../../src/tools/gmx_sham.c:721:50: warning: unused variable 'bAverCorr' [-Wunused-variable] static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE; ^~~~~~~~~ ../../../src/tools/gmx_sham.c:721:38: warning: unused variable 'bSubAv' [-Wunused-variable] static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE; ^~~~~~ ../../../src/tools/gmx_sham.c:720:36: warning: unused variable 'filtlen' [-Wunused-variable] static real tb=-1,te=-1,frac=0.5,filtlen=0,binwidth=0.1; ^~~~~~~ ../../../src/tools/gmx_sham.c:720:27: warning: unused variable 'frac' [-Wunused-variable] static real tb=-1,te=-1,frac=0.5,filtlen=0,binwidth=0.1; ^~~~ At top level: ../../../src/tools/gmx_sham.c:720:27: warning: 'frac' defined but not used [-Wunused-variable] ../../../src/tools/gmx_sham.c:720:36: warning: 'filtlen' defined but not used [-Wunused-variable] static real tb=-1,te=-1,frac=0.5,filtlen=0,binwidth=0.1; ^~~~~~~ ../../../src/tools/gmx_sham.c:721:38: warning: 'bSubAv' defined but not used [-Wunused-variable] static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE; ^~~~~~ ../../../src/tools/gmx_sham.c:721:50: warning: 'bAverCorr' defined but not used [-Wunused-variable] static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE; ^~~~~~~~~ ../../../src/tools/gmx_sham.c:721:66: warning: 'bXYdy' defined but not used [-Wunused-variable] static bool bHaveT=TRUE,bDer=FALSE,bSubAv=TRUE,bAverCorr=FALSE,bXYdy=FALSE; ^~~~~ ../../../src/tools/gmx_sham.c:722:15: warning: 'bEESEF' defined but not used [-Wunused-variable] static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE; ^~~~~~ ../../../src/tools/gmx_sham.c:722:28: warning: 'bEENLC' defined but not used [-Wunused-variable] static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE; ^~~~~~ ../../../src/tools/gmx_sham.c:722:41: warning: 'bEeFitAc' defined but not used [-Wunused-variable] static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE; ^~~~~~~~ ../../../src/tools/gmx_sham.c:722:56: warning: 'bPower' defined but not used [-Wunused-variable] static bool bEESEF=FALSE,bEENLC=FALSE,bEeFitAc=FALSE,bPower=FALSE; ^~~~~~ ../../../src/tools/gmx_sham.c:723:15: warning: 'bShamEner' defined but not used [-Wunused-variable] static bool bShamEner=TRUE,bSham=TRUE; ^~~~~~~~~ ../../../src/tools/gmx_sham.c:728:26: warning: 'nb_min' defined but not used [-Wunused-variable] static int nsets_in=1,nb_min=4,resol=10,nlevels=25; ^~~~~~ ../../../src/tools/gmx_sham.c:728:35: warning: 'resol' defined but not used [-Wunused-variable] static int nsets_in=1,nb_min=4,resol=10,nlevels=25; ^~~~~ In file included from ../../../src/tools/gmx_sham.c:56: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/tools/gmx_sham.c:48: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_sham.c:47: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_sham.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_sham.c:41: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_genbox.lo ../../../src/tools/gmx_genbox.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_genbox.c -fPIC -DPIC -o .libs/gmx_genbox.o ../../../src/tools/gmx_genbox.c: In function 'gmx_genbox': ../../../src/tools/gmx_genbox.c:665:11: warning: unused variable 'pbc' [-Wunused-variable] t_pbc pbc; ^~~ In file included from ../../../src/tools/gmx_genbox.c:61: At top level: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_genbox.c:57: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_genbox.c:55: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_genbox.c:55: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/tools/gmx_genbox.c:47: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ ../../../src/tools/gmx_genbox.c: In function 'update_top.constprop': ../../../src/tools/gmx_genbox.c:538:19: warning: ' in water ' directive writing 10 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(buf,"%s in water\n",buf2); ^~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../src/tools/gmx_genbox.c:41: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 11 and 4106 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_wham.lo ../../../src/tools/gmx_wham.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_wham.c -fPIC -DPIC -o .libs/gmx_wham.o In file included from ../../../src/tools/gmx_wham.c:48: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_wham.c:47: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_wham.c:47: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_wham.c:44: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ ../../../src/tools/gmx_wham.c: In function 'open_pdo_pipe': ../../../src/tools/gmx_wham.c:1201:27: warning: ' -c < ' directive writing 6 bytes into a region of size between 1 and 1024 [-Wformat-overflow=] sprintf(Buffer,"%s -c < %s",gunzip,fn); ^~~~~~ In file included from /usr/include/stdio.h:862, from ../../../src/tools/gmx_wham.c:37: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 7 or more bytes (assuming 1030) into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_genion.lo ../../../src/tools/gmx_genion.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_genion.c -fPIC -DPIC -o .libs/gmx_genion.o ../../../src/tools/gmx_genion.c: In function 'insert_ion': ../../../src/tools/gmx_genion.c:72:8: warning: unused variable 'xei' [-Wunused-variable] rvec xei,dx; ^~~ ../../../src/tools/gmx_genion.c:70:29: warning: unused variable 'm' [-Wunused-variable] int i,ii,ei,owater,wlast,m,nw; ^ ../../../src/tools/gmx_genion.c:70:23: warning: unused variable 'wlast' [-Wunused-variable] int i,ii,ei,owater,wlast,m,nw; ^~~~~ ../../../src/tools/gmx_genion.c:70:16: warning: unused variable 'owater' [-Wunused-variable] int i,ii,ei,owater,wlast,m,nw; ^~~~~~ In file included from ../../../src/tools/gmx_genion.c:54: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../src/tools/gmx_genion.c:51: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/tools/gmx_genion.c:48: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_genion.c:46: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_genion.c:41: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_genconf.lo ../../../src/tools/gmx_genconf.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_genconf.c -fPIC -DPIC -o .libs/gmx_genconf.o ../../../src/tools/gmx_genconf.c:93:13: warning: 'move_x' defined but not used [-Wunused-function] static void move_x(int natoms,rvec x[],matrix box) ^~~~~~ In file included from ../../../src/tools/gmx_genconf.c:48: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_genconf.c:47: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_genconf.c:42: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_genconf.c:40: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_genpr.lo ../../../src/tools/gmx_genpr.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_genpr.c -fPIC -DPIC -o .libs/gmx_genpr.o In file included from ../../../src/tools/gmx_genpr.c:50: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_genpr.c:50: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/tools/gmx_genpr.c:44: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_genpr.c:42: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_editconf.lo ../../../src/tools/gmx_editconf.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_editconf.c -fPIC -DPIC -o .libs/gmx_editconf.o ../../../src/tools/gmx_editconf.c: In function 'calc_geom': ../../../src/tools/gmx_editconf.c:103:12: warning: unused variable 'grpnames' [-Wunused-variable] char *grpnames; ^~~~~~~~ ../../../src/tools/gmx_editconf.c: In function 'set_pdb_conf_bfac': ../../../src/tools/gmx_editconf.c:195:9: warning: unused variable 'out' [-Wunused-variable] FILE *out; ^~~ ../../../src/tools/gmx_editconf.c: In function 'gmx_editconf': ../../../src/tools/gmx_editconf.c:518:35: warning: unused variable 'zcent' [-Wunused-variable] real xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw; ^~~~~ ../../../src/tools/gmx_editconf.c:518:29: warning: unused variable 'ycent' [-Wunused-variable] real xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw; ^~~~~ ../../../src/tools/gmx_editconf.c:518:23: warning: unused variable 'xcent' [-Wunused-variable] real xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw; ^~~~~ ../../../src/tools/gmx_editconf.c:518:20: warning: unused variable 'zs' [-Wunused-variable] real xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw; ^~ ../../../src/tools/gmx_editconf.c:518:17: warning: unused variable 'ys' [-Wunused-variable] real xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw; ^~ ../../../src/tools/gmx_editconf.c:518:14: warning: unused variable 'xs' [-Wunused-variable] real xs,ys,zs,xcent,ycent,zcent,diam=0,mass=0,d,vdw; ^~ ../../../src/tools/gmx_editconf.c:516:38: warning: unused variable 'bCubic' [-Wunused-variable] bool bIndex,bSetSize,bSetAng,bCubic,bDist,bSetCenter; ^~~~~~ ../../../src/tools/gmx_editconf.c:512:30: warning: unused variable 'tindex' [-Wunused-variable] atom_id *index,*sindex,*tindex; ^~~~~~ ../../../src/tools/gmx_editconf.c:511:26: warning: unused variable 'tsize' [-Wunused-variable] int isize,ssize,tsize; ^~~~~ ../../../src/tools/gmx_editconf.c:456:33: warning: unused variable 'to_diam' [-Wunused-variable] static real dist=0.0,rbox=0.0,to_diam=0.0; ^~~~~~~ ../../../src/tools/gmx_editconf.c:456:24: warning: unused variable 'rbox' [-Wunused-variable] static real dist=0.0,rbox=0.0,to_diam=0.0; ^~~~ At top level: ../../../src/tools/gmx_editconf.c:456:24: warning: 'rbox' defined but not used [-Wunused-variable] ../../../src/tools/gmx_editconf.c:456:33: warning: 'to_diam' defined but not used [-Wunused-variable] static real dist=0.0,rbox=0.0,to_diam=0.0; ^~~~~~~ ../../../src/tools/gmx_editconf.c:79:14: warning: 'pdbtp' defined but not used [-Wunused-variable] static char *pdbtp[epdbNR]={"ATOM ","HETATM"}; ^~~~~ In file included from ../../../src/tools/gmx_editconf.c:53: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_editconf.c:53: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_editconf.c:49: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_editconf.c:48: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_editconf.c:43: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_xpm2ps.lo ../../../src/tools/gmx_xpm2ps.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_xpm2ps.c -fPIC -DPIC -o .libs/gmx_xpm2ps.o ../../../src/tools/gmx_xpm2ps.c: In function 'xpm_mat': ../../../src/tools/gmx_xpm2ps.c:559:14: warning: unused variable 'k' [-Wunused-variable] int i,j,k,x,y,col; ^ ../../../src/tools/gmx_xpm2ps.c:559:12: warning: unused variable 'j' [-Wunused-variable] int i,j,k,x,y,col; ^ ../../../src/tools/gmx_xpm2ps.c:558:10: warning: unused variable 'buf' [-Wunused-variable] char buf[100]; ^~~ ../../../src/tools/gmx_xpm2ps.c: In function 'tick_spacing': ../../../src/tools/gmx_xpm2ps.c:599:18: warning: unused variable 'bFive' [-Wunused-variable] bool bTryAgain,bFive; ^~~~~ ../../../src/tools/gmx_xpm2ps.c: In function 'ps_mat': ../../../src/tools/gmx_xpm2ps.c:644:12: warning: unused variable 'j' [-Wunused-variable] int i,j,x,y,col,leg=0; ^ ../../../src/tools/gmx_xpm2ps.c: In function 'write_combined_matrix': ../../../src/tools/gmx_xpm2ps.c:919:14: warning: unused variable 'map' [-Wunused-variable] t_mapping *map=NULL; ^~~ ../../../src/tools/gmx_xpm2ps.c: In function 'gmx_xpm2ps': ../../../src/tools/gmx_xpm2ps.c:1127:56: warning: unused variable 'bAdd' [-Wunused-variable] static bool bFrame=TRUE,bZeroLine=FALSE,bYonce=FALSE,bAdd=FALSE; ^~~~ At top level: ../../../src/tools/gmx_xpm2ps.c:1127:56: warning: 'bAdd' defined but not used [-Wunused-variable] In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_xpm2ps.c:45: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_xpm2ps.c:42: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ ../../../src/tools/gmx_xpm2ps.c: In function 'ps_mat': ../../../src/tools/gmx_xpm2ps.c:346:22: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(buf,"%g",mat[i].axis_x[j]); ^ In file included from /usr/include/stdio.h:862, from ../../../include/string2.h:56, from ../../../src/tools/gmx_xpm2ps.c:41: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 2 and 14 bytes into a destination of size 12 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../src/tools/gmx_xpm2ps.c:374:22: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(buf,"%g",mat[i].axis_y[j]); ^ In file included from /usr/include/stdio.h:862, from ../../../include/string2.h:56, from ../../../src/tools/gmx_xpm2ps.c:41: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 2 and 14 bytes into a destination of size 12 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_trjconv.lo ../../../src/tools/gmx_trjconv.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_trjconv.c -fPIC -DPIC -o .libs/gmx_trjconv.o ../../../src/tools/gmx_trjconv.c: In function 'calc_pbc_cluster': ../../../src/tools/gmx_trjconv.c:89:34: warning: unused variable 'is' [-Wunused-variable] int m,i,j,j0,j1,jj,ai,iter,is; ^~ ../../../src/tools/gmx_trjconv.c: In function 'put_molecule_com_in_box': ../../../src/tools/gmx_trjconv.c:252:29: warning: unused variable 'dx' [-Wunused-variable] rvec com,new_com,shift,dx,box_center; ^~ ../../../src/tools/gmx_trjconv.c: In function 'put_residue_com_in_box': ../../../src/tools/gmx_trjconv.c:303:37: warning: variable 'res_nat' set but not used [-Wunused-but-set-variable] atom_id i, j, res_start, res_end, res_nat; ^~~~~~~ ../../../src/tools/gmx_trjconv.c: In function 'gmx_trjconv': ../../../src/tools/gmx_trjconv.c:726:16: warning: unused variable 'xdr' [-Wunused-variable] int xdr=0; ^~~ ../../../src/tools/gmx_trjconv.c:725:42: warning: unused variable 'command' [-Wunused-variable] char top_title[256],title[256],command[256],filemode[5]; ^~~~~~~ ../../../src/tools/gmx_trjconv.c:715:21: warning: variable 'bFitXY' set but not used [-Wunused-but-set-variable] bool bFit,bFitXY,bPFit,bReset; ^~~~~~ ../../../src/tools/gmx_trjconv.c:707:25: warning: unused variable 'gn_rms' [-Wunused-variable] char *gn_fit,*gn_rms; ^~~~~~ ../../../src/tools/gmx_trjconv.c:706:26: warning: unused variable 'ind_rms' [-Wunused-variable] atom_id *ind_fit,*ind_rms; ^~~~~~~ ../../../src/tools/gmx_trjconv.c:705:21: warning: unused variable 'irms' [-Wunused-variable] int ifit,irms,my_clust=-1; ^~~~ ../../../src/tools/gmx_trjconv.c:695:55: warning: unused variable 'nre' [-Wunused-variable] int m,i,d,frame,outframe,natoms,nout,ncent,nre,newstep=0,model_nr; ^~~ ../../../src/tools/gmx_trjconv.c:694:23: warning: unused variable 'lambda' [-Wunused-variable] real xtcpr, lambda,*w_rls=NULL; ^~~~~~ ../../../src/tools/gmx_trjconv.c:694:16: warning: unused variable 'xtcpr' [-Wunused-variable] real xtcpr, lambda,*w_rls=NULL; ^~~~~ ../../../src/tools/gmx_trjconv.c:693:49: warning: unused variable 'dx' [-Wunused-variable] rvec *xp=NULL,x_shift,hbox,box_center,dx; ^~ ../../../src/tools/gmx_trjconv.c:693:38: warning: unused variable 'box_center' [-Wunused-variable] rvec *xp=NULL,x_shift,hbox,box_center,dx; ^~~~~~~~~~ In file included from ../../../src/tools/gmx_trjconv.c:57: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_trjconv.c:57: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/tools/gmx_trjconv.c:53: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_trjconv.c:51: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_trjconv.c:47: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ ../../../src/tools/gmx_trjconv.c: In function 'gmx_trjconv': ../../../src/tools/gmx_trjconv.c:1325:46: warning: '%s' directive writing up to 255 bytes into a region of size 233 [-Wformat-overflow=] sprintf(title,"Generated by trjconv : %s t= %9.5f", ^~ top_title,fr.time); ~~~~~~~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../include/typedefs.h:52, from ../../../include/macros.h:49, from ../../../src/tools/gmx_trjconv.c:42: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 37 and 599 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../src/tools/gmx_trjconv.c:1336:20: warning: ' t= ' directive writing 4 bytes into a region of size between 1 and 256 [-Wformat-overflow=] sprintf(title,"%s t= %9.5f",top_title,frout.time); ^~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../include/typedefs.h:52, from ../../../include/macros.h:49, from ../../../src/tools/gmx_trjconv.c:42: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 14 and 576 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o editconf.o ../../../src/tools/editconf.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o eneconv.o ../../../src/tools/eneconv.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o genbox.o ../../../src/tools/genbox.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o genconf.o ../../../src/tools/genconf.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o genrestr.o ../../../src/tools/genrestr.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_nmtraj.o ../../../src/tools/g_nmtraj.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_wheel.lo ../../../src/tools/gmx_wheel.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_wheel.c -fPIC -DPIC -o .libs/gmx_wheel.o In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_wheel.c:55: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/gmx_wheel.c:52: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_wheel.c:49: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/gmx_wheel.c:49: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o edittop.lo ../../../src/tools/edittop.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/edittop.c -fPIC -DPIC -o .libs/edittop.o ../../../src/tools/edittop.c: In function 'delete_from_block': ../../../src/tools/edittop.c:104:17: warning: unused variable 'k' [-Wunused-variable] int i,i1,j1,j,k; ^ ../../../src/tools/edittop.c:104:12: warning: unused variable 'j1' [-Wunused-variable] int i,i1,j1,j,k; ^~ ../../../src/tools/edittop.c: In function 'delete_atom': ../../../src/tools/edittop.c:161:7: warning: unused variable 'k' [-Wunused-variable] int k; ^ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o trjcat.o ../../../src/tools/trjcat.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o calcpot.lo ../../../src/tools/calcpot.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/calcpot.c -fPIC -DPIC -o .libs/calcpot.o ../../../src/tools/calcpot.c: In function 'c_tabpot': ../../../src/tools/calcpot.c:79:8: warning: unused variable 'qqO' [-Wunused-variable] real qqO,qj; ^~~ ../../../src/tools/calcpot.c:78:43: warning: unused variable 'rinv2O' [-Wunused-variable] real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O; ^~~~~~ ../../../src/tools/calcpot.c:78:24: warning: unused variable 'fsO' [-Wunused-variable] real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O; ^~~ ../../../src/tools/calcpot.c:78:20: warning: unused variable 'vcO' [-Wunused-variable] real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O; ^~~ ../../../src/tools/calcpot.c:78:16: warning: unused variable 'tzO' [-Wunused-variable] real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O; ^~~ ../../../src/tools/calcpot.c:78:12: warning: unused variable 'tyO' [-Wunused-variable] real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O; ^~~ ../../../src/tools/calcpot.c:78:8: warning: unused variable 'txO' [-Wunused-variable] real txO,tyO,tzO,vcO,fsO,qO,rsqO,rinv1O,rinv2O; ^~~ ../../../src/tools/calcpot.c:76:28: warning: unused variable 'fzO' [-Wunused-variable] real fxJ,fyJ,fzJ,fxO,fyO,fzO; ^~~ ../../../src/tools/calcpot.c:76:24: warning: unused variable 'fyO' [-Wunused-variable] real fxJ,fyJ,fzJ,fxO,fyO,fzO; ^~~ ../../../src/tools/calcpot.c:76:20: warning: unused variable 'fxO' [-Wunused-variable] real fxJ,fyJ,fzJ,fxO,fyO,fzO; ^~~ ../../../src/tools/calcpot.c:76:16: warning: unused variable 'fzJ' [-Wunused-variable] real fxJ,fyJ,fzJ,fxO,fyO,fzO; ^~~ ../../../src/tools/calcpot.c:76:12: warning: unused variable 'fyJ' [-Wunused-variable] real fxJ,fyJ,fzJ,fxO,fyO,fzO; ^~~ ../../../src/tools/calcpot.c:76:8: warning: unused variable 'fxJ' [-Wunused-variable] real fxJ,fyJ,fzJ,fxO,fyO,fzO; ^~~ ../../../src/tools/calcpot.c:75:38: warning: unused variable 'ggid' [-Wunused-variable] int ii,k,n,jnr,ii3,nj0,nj1,is3,j3,ggid; ^~~~ ../../../src/tools/calcpot.c:71:50: warning: unused variable 'FF' [-Wunused-variable] real r1,r1t,fijC,eps,eps2,Y,F,Fp,Geps,Heps2,VV,FF; ^~ ../../../src/tools/calcpot.c:71:15: warning: unused variable 'fijC' [-Wunused-variable] real r1,r1t,fijC,eps,eps2,Y,F,Fp,Geps,Heps2,VV,FF; ^~~~ ../../../src/tools/calcpot.c:70:14: warning: unused variable 'two' [-Wunused-variable] const real two = 2.000000; ^~~ ../../../src/tools/calcpot.c: In function 'calc_pot': ../../../src/tools/calcpot.c:176:15: warning: variable 'box_size' set but not used [-Wunused-but-set-variable] rvec box_size; ^~~~~~~~ ../../../src/tools/calcpot.c: In function 'init_calcpot': ../../../src/tools/calcpot.c:238:12: warning: variable 'box_size' set but not used [-Wunused-but-set-variable] rvec box_size; ^~~~~~~~ In file included from ../../../src/tools/calcpot.c:46: At top level: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../src/tools/calcpot.c:40: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/calcpot.c:40: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_eneconv.lo ../../../src/tools/gmx_eneconv.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_eneconv.c -fPIC -DPIC -o .libs/gmx_eneconv.o ../../../src/tools/gmx_eneconv.c: In function 'gmx_eneconv': ../../../src/tools/gmx_eneconv.c:427:14: warning: unused variable 'ok' [-Wunused-variable] bool ok; ^~ ../../../src/tools/gmx_eneconv.c:426:35: warning: unused variable 'chptr' [-Wunused-variable] char inputstring[STRLEN],*chptr; ^~~~~ ../../../src/tools/gmx_eneconv.c:426:14: warning: unused variable 'inputstring' [-Wunused-variable] char inputstring[STRLEN],*chptr; ^~~~~~~~~~~ ../../../src/tools/gmx_eneconv.c:425:42: warning: unused variable 't1' [-Wunused-variable] real *readtime,*settime,timestep,t1,tadjust; ^~ ../../../src/tools/gmx_eneconv.c:421:42: warning: unused variable 'j' [-Wunused-variable] int nre,nremax,this_nre,nfile,i,j,kkk,nset,*set=NULL; ^ At top level: ../../../src/tools/gmx_eneconv.c:101:13: warning: 'same_time' defined but not used [-Wunused-function] static bool same_time(real t1,real t2) ^~~~~~~~~ In file included from ../../../src/tools/gmx_eneconv.c:48: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_eneconv.c:45: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o trjconv.o ../../../src/tools/trjconv.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o trjorder.o ../../../src/tools/trjorder.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o wheel.o ../../../src/tools/wheel.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xpm2ps.o ../../../src/tools/xpm2ps.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o genion.o ../../../src/tools/genion.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_analyze.o ../../../src/tools/g_analyze.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_anaeig.o ../../../src/tools/g_anaeig.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o gmx_vanhove.lo ../../../src/tools/gmx_vanhove.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/gmx_vanhove.c -fPIC -DPIC -o .libs/gmx_vanhove.o In file included from ../../../src/tools/gmx_vanhove.c:56: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../src/tools/gmx_vanhove.c:51: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/gmx_vanhove.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/gmx_vanhove.c:47: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_angle.o ../../../src/tools/g_angle.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_bond.o ../../../src/tools/g_bond.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_bundle.o ../../../src/tools/g_bundle.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_chi.o ../../../src/tools/g_chi.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_cluster.o ../../../src/tools/g_cluster.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_confrms.o ../../../src/tools/g_confrms.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o mk_angndx.o ../../../src/tools/mk_angndx.c In file included from ../../../include/statutil.h:51, from ../../../src/tools/mk_angndx.c:43: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/mk_angndx.c:42: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_covar.o ../../../src/tools/g_covar.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_current.o ../../../src/tools/g_current.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_density.o ../../../src/tools/g_density.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_densmap.o ../../../src/tools/g_densmap.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_dih.o ../../../src/tools/g_dih.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_dielectric.o ../../../src/tools/g_dielectric.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_helixorient.o ../../../src/tools/g_helixorient.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_disre.o ../../../src/tools/g_disre.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_principal.o ../../../src/tools/g_principal.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_dipoles.o ../../../src/tools/g_dipoles.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o addconf.lo ../../../src/tools/addconf.c mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c ../../../src/tools/addconf.c -fPIC -DPIC -o .libs/addconf.o ../../../src/tools/addconf.c: In function 'do_nsgrid': ../../../src/tools/addconf.c:205:14: warning: variable 'box_size' set but not used [-Wunused-but-set-variable] rvec box_size; ^~~~~~~~ ../../../src/tools/addconf.c: In function 'add_conf': ../../../src/tools/addconf.c:328:23: warning: unused variable 'xpp' [-Wunused-variable] rvec dx,xi,xj,xpp,*x_all,*v_all; ^~~ ../../../src/tools/addconf.c:326:34: warning: unused variable 'dz1' [-Wunused-variable] int dx0,dx1,dy0,dy1,dz0,dz1; ^~~ ../../../src/tools/addconf.c:326:30: warning: unused variable 'dz0' [-Wunused-variable] int dx0,dx1,dy0,dy1,dz0,dz1; ^~~ ../../../src/tools/addconf.c:326:26: warning: unused variable 'dy1' [-Wunused-variable] int dx0,dx1,dy0,dy1,dz0,dz1; ^~~ ../../../src/tools/addconf.c:326:22: warning: unused variable 'dy0' [-Wunused-variable] int dx0,dx1,dy0,dy1,dz0,dz1; ^~~ ../../../src/tools/addconf.c:326:18: warning: unused variable 'dx1' [-Wunused-variable] int dx0,dx1,dy0,dy1,dz0,dz1; ^~~ ../../../src/tools/addconf.c:326:14: warning: unused variable 'dx0' [-Wunused-variable] int dx0,dx1,dy0,dy1,dz0,dz1; ^~~ ../../../src/tools/addconf.c:325:44: warning: unused variable 'maxincell' [-Wunused-variable] int prev,resnr,nresadd,d,k,ncells,maxincell; ^~~~~~~~~ ../../../src/tools/addconf.c:325:37: warning: unused variable 'ncells' [-Wunused-variable] int prev,resnr,nresadd,d,k,ncells,maxincell; ^~~~~~ ../../../src/tools/addconf.c:325:35: warning: unused variable 'k' [-Wunused-variable] int prev,resnr,nresadd,d,k,ncells,maxincell; ^ ../../../src/tools/addconf.c:325:33: warning: unused variable 'd' [-Wunused-variable] int prev,resnr,nresadd,d,k,ncells,maxincell; ^ ../../../src/tools/addconf.c:325:19: warning: unused variable 'resnr' [-Wunused-variable] int prev,resnr,nresadd,d,k,ncells,maxincell; ^~~~~ ../../../src/tools/addconf.c:324:47: warning: unused variable 'iprot' [-Wunused-variable] int i,j,jj,m,j0,j1,jjj,jnres,jnr,inr,iprot,is1,is2; ^~~~~ ../../../src/tools/addconf.c:324:21: warning: unused variable 'm' [-Wunused-variable] int i,j,jj,m,j0,j1,jjj,jnres,jnr,inr,iprot,is1,is2; ^ ../../../src/tools/addconf.c:324:18: warning: unused variable 'jj' [-Wunused-variable] int i,j,jj,m,j0,j1,jjj,jnres,jnr,inr,iprot,is1,is2; ^~ ../../../src/tools/addconf.c:322:47: warning: unused variable 'ib2' [-Wunused-variable] real max_vdw,*r_prot,*r_all,n2,r2,ib1,ib2; ^~~ ../../../src/tools/addconf.c:322:43: warning: unused variable 'ib1' [-Wunused-variable] real max_vdw,*r_prot,*r_all,n2,r2,ib1,ib2; ^~~ At top level: ../../../src/tools/addconf.c:70:13: warning: 'set_margin' defined but not used [-Wunused-function] static void set_margin(t_atoms *atoms, rvec *x, real *r) ^~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/tools/addconf.c:47: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/addconf.c:46: ../../../include/force.h:51:14: warning: 'sepdvdlformat' defined but not used [-Wunused-variable] static char *sepdvdlformat=" %-30s V %12.5e dVdl %12.5e\n"; ^~~~~~~~~~~~~ In file included from ../../../src/tools/addconf.c:42: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/addconf.c:42: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_dist.o ../../../src/tools/g_dist.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_enemat.o ../../../src/tools/g_enemat.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_dyndom.o ../../../src/tools/g_dyndom.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_lie.o ../../../src/tools/g_lie.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_energy.o ../../../src/tools/g_energy.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_filter.o ../../../src/tools/g_filter.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_h2order.o ../../../src/tools/g_h2order.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_gyrate.o ../../../src/tools/g_gyrate.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_helix.o ../../../src/tools/g_helix.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_hbond.o ../../../src/tools/g_hbond.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o anadock.o ../../../src/tools/anadock.c ../../../src/tools/anadock.c: In function 'rmsd_dist': ../../../src/tools/anadock.c:197:13: warning: variable 'dist' set but not used [-Wunused-but-set-variable] real rmsd,dist; ^~~~ In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/tools/anadock.c:47: At top level: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/tools/anadock.c:46: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/anadock.c:46: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/tools/anadock.c:41: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ ../../../src/tools/anadock.c: In function 'main': ../../../src/tools/anadock.c:110:22: warning: '%d' directive writing between 1 and 10 bytes into a region of size between 0 and 255 [-Wformat-overflow=] sprintf(name,"%s_%d.pdb",buf,i+1); ^~ ../../../src/tools/anadock.c:110:18: note: directive argument in the range [1, 2147483647] sprintf(name,"%s_%d.pdb",buf,i+1); ^~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../include/typedefs.h:52, from ../../../include/confio.h:44, from ../../../src/tools/anadock.c:40: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 7 and 271 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_mindist.o ../../../src/tools/g_mindist.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_morph.o ../../../src/tools/g_morph.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_msd.o ../../../src/tools/g_msd.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_order.o ../../../src/tools/g_order.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_nmeig.o ../../../src/tools/g_nmeig.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_nmens.o ../../../src/tools/g_nmens.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_polystat.o ../../../src/tools/g_polystat.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_potential.o ../../../src/tools/g_potential.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_rama.o ../../../src/tools/g_rama.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_rdf.o ../../../src/tools/g_rdf.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_rms.o ../../../src/tools/g_rms.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_rmsdist.o ../../../src/tools/g_rmsdist.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_rmsf.o ../../../src/tools/g_rmsf.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_rotacf.o ../../../src/tools/g_rotacf.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_saltbr.o ../../../src/tools/g_saltbr.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_sas.o ../../../src/tools/g_sas.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_sgangle.o ../../../src/tools/g_sgangle.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_sham.o ../../../src/tools/g_sham.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_sorient.o ../../../src/tools/g_sorient.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_sdf.o ../../../src/tools/g_sdf.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_spol.o ../../../src/tools/g_spol.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_spatial.o ../../../src/tools/g_spatial.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_tcaf.o ../../../src/tools/g_tcaf.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_vanhove.o ../../../src/tools/g_vanhove.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_traj.o ../../../src/tools/g_traj.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_clustsize.o ../../../src/tools/g_clustsize.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_velacc.o ../../../src/tools/g_velacc.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_wham.o ../../../src/tools/g_wham.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_mdmat.o ../../../src/tools/g_mdmat.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o g_kinetics.o ../../../src/tools/g_kinetics.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o make_edi.o ../../../src/tools/make_edi.c ../../../src/tools/make_edi.c: In function 'sscan_list': ../../../src/tools/make_edi.c:185:14: warning: this 'else' clause does not guard... [-Wmisleading-indentation] else status=sError; break; ^~~~ ../../../src/tools/make_edi.c:185:34: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' else status=sError; break; ^~~~~ ../../../src/tools/make_edi.c: In function 'main': ../../../src/tools/make_edi.c:640:10: warning: variable 'bTop' set but not used [-Wunused-but-set-variable] bool bTop, bFit1; ^~~~ In file included from ../../../src/tools/make_edi.c:56: At top level: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/tools/make_edi.c:52: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/tools/make_edi.c:50: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/make_edi.c:50: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/tools/make_edi.c:43: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o sigeps.o ../../../src/tools/sigeps.c ../../../src/tools/sigeps.c: In function 'main': ../../../src/tools/sigeps.c:106:42: warning: unused variable 'pp' [-Wunused-variable] real qq,x,oldx,minimum,mval,dp[2],pp[2]; ^~ In file included from ../../../src/tools/sigeps.c:50: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/sigeps.c:50: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/tools/sigeps.c:47: ../../../include/pdbio.h:53:14: warning: 'pdbformat4' defined but not used [-Wunused-variable] static char *pdbformat4="%-6s%5u %-4.4s %3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~~ ../../../include/pdbio.h:52:14: warning: 'pdbformat' defined but not used [-Wunused-variable] static char *pdbformat ="%-6s%5u %-4.4s%3.3s %c%4d %8.3f%8.3f%8.3f"; ^~~~~~~~~ In file included from ../../../src/tools/sigeps.c:44: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/sigeps.c:43: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' mpicc -DHAVE_CONFIG_H -I. -I../../../src/tools -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o make_ndx.o ../../../src/tools/make_ndx.c In file included from ../../../src/tools/make_ndx.c:52: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/tools/make_ndx.c:52: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ In file included from ../../../src/tools/make_ndx.c:48: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/tools/make_ndx.c:46: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ ../../../src/tools/make_ndx.c: In function 'main': ../../../src/tools/make_ndx.c:994:20: warning: '_&_' directive writing 3 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(gname,"%s_&_%s",gname1,gname2); ^~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../src/tools/make_ndx.c:41: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 4 and 8194 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../src/tools/make_ndx.c:990:21: warning: '%s' directive writing up to 4095 bytes into a region of size between 0 and 4095 [-Wformat-overflow=] sprintf(gname,"%s_%s",gname1,gname2); ^~ ~~~~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../src/tools/make_ndx.c:41: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 2 and 8192 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -version-info 5:0:0 -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o libgmxana_mpi_d.la -rpath /usr/lib64 autocorr.lo expfit.lo polynomials.lo levenmar.lo anadih.lo pp2shift.lo dlist.lo eigio.lo lsq.lo cmat.lo eigensolver.lo nsc.lo hxprops.lo fitahx.lo gmx_analyze.lo gmx_anaeig.lo gmx_angle.lo gmx_bond.lo gmx_bundle.lo gmx_chi.lo gmx_cluster.lo gmx_confrms.lo gmx_covar.lo gmx_current.lo gmx_density.lo gmx_densmap.lo gmx_dih.lo gmx_dielectric.lo gmx_kinetics.lo gmx_spatial.lo gmx_dipoles.lo gmx_disre.lo gmx_dist.lo gmx_dyndom.lo gmx_enemat.lo gmx_energy.lo gmx_lie.lo gmx_filter.lo gmx_gyrate.lo gmx_h2order.lo gmx_hbond.lo gmx_helix.lo gmx_mindist.lo gmx_msd.lo gmx_morph.lo gmx_nmeig.lo gmx_nmens.lo gmx_order.lo gmx_principal.lo gmx_polystat.lo gmx_potential.lo gmx_rama.lo gmx_rdf.lo gmx_rms.lo gmx_rmsdist.lo gmx_rmsf.lo gmx_rotacf.lo gmx_saltbr.lo gmx_sas.lo gmx_sdf.lo gmx_sgangle.lo gmx_sorient.lo gmx_spol.lo gmx_tcaf.lo gmx_traj.lo gmx_velacc.lo gmx_helixorient.lo gmx_clustsize.lo gmx_mdmat.lo gmx_wham.lo correl.lo gmx_sham.lo gmx_nmtraj.lo gmx_trjconv.lo gmx_trjcat.lo gmx_trjorder.lo gmx_xpm2ps.lo gmx_editconf.lo gmx_genbox.lo gmx_genion.lo gmx_genconf.lo gmx_genpr.lo gmx_eneconv.lo gmx_vanhove.lo gmx_wheel.lo addconf.lo calcpot.lo edittop.lo ../gmxlib/libgmx_mpi_d.la ../mdlib/libmd_mpi_d.la -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte mpicc -shared .libs/autocorr.o .libs/expfit.o .libs/polynomials.o .libs/levenmar.o .libs/anadih.o .libs/pp2shift.o .libs/dlist.o .libs/eigio.o .libs/lsq.o .libs/cmat.o .libs/eigensolver.o .libs/nsc.o .libs/hxprops.o .libs/fitahx.o .libs/gmx_analyze.o .libs/gmx_anaeig.o .libs/gmx_angle.o .libs/gmx_bond.o .libs/gmx_bundle.o .libs/gmx_chi.o .libs/gmx_cluster.o .libs/gmx_confrms.o .libs/gmx_covar.o .libs/gmx_current.o .libs/gmx_density.o .libs/gmx_densmap.o .libs/gmx_dih.o .libs/gmx_dielectric.o .libs/gmx_kinetics.o .libs/gmx_spatial.o .libs/gmx_dipoles.o .libs/gmx_disre.o .libs/gmx_dist.o .libs/gmx_dyndom.o .libs/gmx_enemat.o .libs/gmx_energy.o .libs/gmx_lie.o .libs/gmx_filter.o .libs/gmx_gyrate.o .libs/gmx_h2order.o .libs/gmx_hbond.o .libs/gmx_helix.o .libs/gmx_mindist.o .libs/gmx_msd.o .libs/gmx_morph.o .libs/gmx_nmeig.o .libs/gmx_nmens.o .libs/gmx_order.o .libs/gmx_principal.o .libs/gmx_polystat.o .libs/gmx_potential.o .libs/gmx_rama.o .libs/gmx_rdf.o .libs/gmx_rms.o .libs/gmx_rmsdist.o .libs/gmx_rmsf.o .libs/gmx_rotacf.o .libs/gmx_saltbr.o .libs/gmx_sas.o .libs/gmx_sdf.o .libs/gmx_sgangle.o .libs/gmx_sorient.o .libs/gmx_spol.o .libs/gmx_tcaf.o .libs/gmx_traj.o .libs/gmx_velacc.o .libs/gmx_helixorient.o .libs/gmx_clustsize.o .libs/gmx_mdmat.o .libs/gmx_wham.o .libs/correl.o .libs/gmx_sham.o .libs/gmx_nmtraj.o .libs/gmx_trjconv.o .libs/gmx_trjcat.o .libs/gmx_trjorder.o .libs/gmx_xpm2ps.o .libs/gmx_editconf.o .libs/gmx_genbox.o .libs/gmx_genion.o .libs/gmx_genconf.o .libs/gmx_genpr.o .libs/gmx_eneconv.o .libs/gmx_vanhove.o .libs/gmx_wheel.o .libs/addconf.o .libs/calcpot.o .libs/edittop.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/lib64/openmpi/lib ../gmxlib/.libs/libgmx_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wl,-Rpath:/usr/lib64/openmpi/lib -Wl,-soname -Wl,libgmxana_mpi_d.so.5 -o .libs/libgmxana_mpi_d.so.5.0.0 (cd .libs && rm -f libgmxana_mpi_d.so.5 && ln -s libgmxana_mpi_d.so.5.0.0 libgmxana_mpi_d.so.5) (cd .libs && rm -f libgmxana_mpi_d.so && ln -s libgmxana_mpi_d.so.5.0.0 libgmxana_mpi_d.so) creating libgmxana_mpi_d.la (cd .libs && rm -f libgmxana_mpi_d.la && ln -s ../libgmxana_mpi_d.la libgmxana_mpi_d.la) make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o eneconv eneconv.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_eneconv.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/eneconv eneconv.o .libs/gmx_eneconv.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating eneconv make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o do_dssp do_dssp.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/do_dssp do_dssp.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating do_dssp make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o genrestr genrestr.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_genpr.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/genrestr genrestr.o .libs/gmx_genpr.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating genrestr make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o genconf genconf.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_genconf.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/genconf genconf.o .libs/gmx_genconf.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating genconf make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o genbox genbox.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/addconf.o .libs/gmx_genbox.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/genbox genbox.o .libs/addconf.o .libs/gmx_genbox.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating genbox make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o editconf editconf.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_editconf.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/editconf editconf.o .libs/gmx_editconf.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating editconf make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_nmtraj g_nmtraj.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/eigio.o .libs/gmx_nmtraj.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_nmtraj g_nmtraj.o .libs/eigio.o .libs/gmx_nmtraj.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_nmtraj make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o make_ndx make_ndx.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/make_ndx make_ndx.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating make_ndx make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o mk_angndx mk_angndx.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/mk_angndx mk_angndx.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating mk_angndx make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o trjcat trjcat.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_trjcat.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/trjcat trjcat.o .libs/gmx_trjcat.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating trjcat make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o trjconv trjconv.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_trjconv.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/trjconv trjconv.o .libs/gmx_trjconv.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating trjconv make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o wheel wheel.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_wheel.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/wheel wheel.o .libs/gmx_wheel.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating wheel make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o trjorder trjorder.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_trjorder.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/trjorder trjorder.o .libs/gmx_trjorder.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating trjorder make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o xpm2ps xpm2ps.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_xpm2ps.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/xpm2ps xpm2ps.o .libs/gmx_xpm2ps.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating xpm2ps make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o genion genion.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/calcpot.o .libs/gmx_genion.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/genion genion.o .libs/calcpot.o .libs/gmx_genion.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating genion make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o anadock anadock.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/lsq.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/anadock anadock.o .libs/lsq.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating anadock make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o make_edi make_edi.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/eigio.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/make_edi make_edi.o .libs/eigio.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating make_edi make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_angle g_angle.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/dlist.o .libs/anadih.o .libs/gmx_angle.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_angle g_angle.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/dlist.o .libs/anadih.o .libs/gmx_angle.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_angle make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_anaeig g_anaeig.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/eigio.o .libs/gmx_anaeig.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_anaeig g_anaeig.o .libs/eigio.o .libs/gmx_anaeig.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_anaeig make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_bundle g_bundle.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_bundle.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_bundle g_bundle.o .libs/gmx_bundle.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_bundle make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_bond g_bond.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/lsq.o .libs/gmx_bond.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_bond g_bond.o .libs/lsq.o .libs/gmx_bond.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_bond make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_analyze g_analyze.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_hbond.o .libs/gmx_analyze.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_analyze g_analyze.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_hbond.o .libs/gmx_analyze.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_analyze make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_chi g_chi.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/pp2shift.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/dlist.o .libs/anadih.o .libs/gmx_chi.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_chi g_chi.o .libs/pp2shift.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/dlist.o .libs/anadih.o .libs/gmx_chi.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_chi make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_cluster g_cluster.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/eigensolver.o .libs/cmat.o .libs/gmx_cluster.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_cluster g_cluster.o .libs/eigensolver.o .libs/cmat.o .libs/gmx_cluster.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_cluster make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_confrms g_confrms.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_confrms.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_confrms g_confrms.o .libs/gmx_confrms.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_confrms make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_density g_density.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_density.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_density g_density.o .libs/gmx_density.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_density make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_densmap g_densmap.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_densmap.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_densmap g_densmap.o .libs/gmx_densmap.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_densmap make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_current g_current.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_current.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_current g_current.o .libs/gmx_current.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_current make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_dielectric g_dielectric.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_dielectric.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_dielectric g_dielectric.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_dielectric.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_dielectric make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_covar g_covar.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/eigensolver.o .libs/eigio.o .libs/gmx_covar.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_covar g_covar.o .libs/eigensolver.o .libs/eigio.o .libs/gmx_covar.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_covar make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_helixorient g_helixorient.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_helixorient.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_helixorient g_helixorient.o .libs/gmx_helixorient.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_helixorient make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_dih g_dih.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_dih.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_dih g_dih.o .libs/gmx_dih.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_dih make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_principal g_principal.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_principal.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_principal g_principal.o .libs/gmx_principal.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_principal make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_dist g_dist.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_dist.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_dist g_dist.o .libs/gmx_dist.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_dist make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_dipoles g_dipoles.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/lsq.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_dipoles.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_dipoles g_dipoles.o .libs/lsq.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_dipoles.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_dipoles make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_disre g_disre.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_disre.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_disre g_disre.o .libs/gmx_disre.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_disre make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_dyndom g_dyndom.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_dyndom.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_dyndom g_dyndom.o .libs/gmx_dyndom.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_dyndom make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_lie g_lie.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_lie.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_lie g_lie.o .libs/gmx_lie.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_lie make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_energy g_energy.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_energy.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_energy g_energy.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_energy.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_energy make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_enemat g_enemat.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_enemat.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_enemat g_enemat.o .libs/gmx_enemat.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_enemat make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_filter g_filter.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_filter.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_filter g_filter.o .libs/gmx_filter.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_filter make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_h2order g_h2order.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_h2order.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_h2order g_h2order.o .libs/gmx_h2order.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_h2order make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_gyrate g_gyrate.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_gyrate.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_gyrate g_gyrate.o .libs/levenmar.o .libs/polynomials.o .libs/expfit.o .libs/correl.o .libs/autocorr.o .libs/gmx_gyrate.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_gyrate make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_helix g_helix.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/hxprops.o .libs/fitahx.o .libs/gmx_helix.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_helix g_helix.o .libs/hxprops.o .libs/fitahx.o .libs/gmx_helix.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_helix make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_mindist g_mindist.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_mindist.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_mindist g_mindist.o .libs/gmx_mindist.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_mindist make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_morph g_morph.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_morph.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_morph g_morph.o .libs/gmx_morph.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_morph make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_msd g_msd.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/lsq.o .libs/gmx_msd.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_msd g_msd.o .libs/lsq.o .libs/gmx_msd.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_msd make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_hbond g_hbond.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_hbond.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_hbond g_hbond.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_hbond.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_hbond make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_nmeig g_nmeig.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/eigensolver.o .libs/eigio.o .libs/gmx_nmeig.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_nmeig g_nmeig.o .libs/eigensolver.o .libs/eigio.o .libs/gmx_nmeig.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_nmeig make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_nmens g_nmens.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/eigensolver.o .libs/eigio.o .libs/gmx_nmens.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_nmens g_nmens.o .libs/eigensolver.o .libs/eigio.o .libs/gmx_nmens.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_nmens make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_order g_order.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_order.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_order g_order.o .libs/gmx_order.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_order make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_rama g_rama.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_rama.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_rama g_rama.o .libs/gmx_rama.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_rama make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_potential g_potential.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_potential.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_potential g_potential.o .libs/gmx_potential.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_potential make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_polystat g_polystat.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_polystat.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_polystat g_polystat.o .libs/gmx_polystat.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_polystat make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_rms g_rms.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/cmat.o .libs/gmx_rms.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_rms g_rms.o .libs/cmat.o .libs/gmx_rms.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_rms make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_rdf g_rdf.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_rdf.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_rdf g_rdf.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_rdf.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_rdf make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_rmsdist g_rmsdist.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_rmsdist.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_rmsdist g_rmsdist.o .libs/gmx_rmsdist.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_rmsdist make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_sgangle g_sgangle.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_sgangle.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_sgangle g_sgangle.o .libs/gmx_sgangle.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_sgangle make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_sorient g_sorient.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_sorient.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_sorient g_sorient.o .libs/gmx_sorient.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_sorient make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_rotacf g_rotacf.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_rotacf.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_rotacf g_rotacf.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_rotacf.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_rotacf make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_saltbr g_saltbr.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_saltbr.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_saltbr g_saltbr.o .libs/gmx_saltbr.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_saltbr make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_rmsf g_rmsf.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/eigensolver.o .libs/gmx_rmsf.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_rmsf g_rmsf.o .libs/eigensolver.o .libs/gmx_rmsf.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_rmsf make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_sas g_sas.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/nsc.o .libs/gmx_sas.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_sas g_sas.o .libs/nsc.o .libs/gmx_sas.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_sas make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_sham g_sham.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_sham.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_sham g_sham.o .libs/gmx_sham.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_sham make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_spol g_spol.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_spol.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_spol g_spol.o .libs/gmx_spol.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_spol make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_sdf g_sdf.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_sdf.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_sdf g_sdf.o .libs/gmx_sdf.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_sdf make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_clustsize g_clustsize.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_clustsize.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_clustsize g_clustsize.o .libs/gmx_clustsize.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_clustsize make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_tcaf g_tcaf.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_tcaf.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_tcaf g_tcaf.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_tcaf.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_tcaf make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_traj g_traj.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_traj.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_traj g_traj.o .libs/gmx_traj.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_traj make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_spatial g_spatial.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_spatial.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_spatial g_spatial.o .libs/gmx_spatial.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_spatial make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_velacc g_velacc.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_velacc.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_velacc g_velacc.o .libs/levenmar.o .libs/expfit.o .libs/correl.o .libs/polynomials.o .libs/autocorr.o .libs/gmx_velacc.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_velacc make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_vanhove g_vanhove.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_vanhove.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_vanhove g_vanhove.o .libs/gmx_vanhove.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_vanhove make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_mdmat g_mdmat.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_mdmat.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_mdmat g_mdmat.o .libs/gmx_mdmat.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_mdmat make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_wham g_wham.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_wham.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_wham g_wham.o .libs/gmx_wham.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_wham make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o sigeps sigeps.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/sigeps sigeps.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating sigeps make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o g_kinetics g_kinetics.o libgmxana_mpi_d.la ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la .libs/gmx_kinetics.o -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte DIE_RPATH_DIE="/usr/lib64:/usr/lib64/openmpi/lib:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -o .libs/g_kinetics g_kinetics.o .libs/gmx_kinetics.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/lib64/openmpi/lib ./.libs/libgmxana_mpi_d.so ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.so /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.so /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/openmpi/lib/libopen-pal.so /usr/lib64/openmpi/lib/libopen-rte.so creating g_kinetics make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' Making all in ngmx make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx' mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xmb.o ../../../src/ngmx/xmb.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx' mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o ngmx.o ../../../src/ngmx/ngmx.c ../../../src/ngmx/ngmx.c: In function 'dump_xw': ../../../src/ngmx/ngmx.c:68:8: warning: variable 'rc' set but not used [-Wunused-but-set-variable] int rc; ^~ ../../../src/ngmx/ngmx.c: In function 'init_gmx': ../../../src/ngmx/ngmx.c:354:35: warning: unused variable 'nre' [-Wunused-variable] int step,natom,nre,natom_trx; ^~~ At top level: ../../../src/ngmx/ngmx.c:65:13: warning: 'dump_xw' defined but not used [-Wunused-function] static void dump_xw(char *dispname,Window w,char *fn) ^~~~~~~ In file included from ../../../src/ngmx/ngmx.c:52: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/ngmx/ngmx.c:49: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx' mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xutil.o ../../../src/ngmx/xutil.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx' mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o popup.o ../../../src/ngmx/popup.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx' mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o x11.o ../../../src/ngmx/x11.c ../../../src/ngmx/x11.c:265:13: warning: 'Xrm' defined but not used [-Wunused-function] static void Xrm(int *argc, char *argv[]) ^~~ ../../../src/ngmx/x11.c:132:13: warning: 'TestEvent' defined but not used [-Wunused-function] static Bool TestEvent(Display *disp,XEvent *event,char *arg) ^~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx' mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o fgrid.o ../../../src/ngmx/fgrid.c ../../../src/ngmx/fgrid.c: In function 'GetBuf': ../../../src/ngmx/fgrid.c:101:7: warning: variable 'rc' set but not used [-Wunused-but-set-variable] int rc; ^~ ../../../src/ngmx/fgrid.c: In function 'FGridFromFile': ../../../src/ngmx/fgrid.c:346:8: warning: unused variable 'newinfile' [-Wunused-variable] char newinfile[STRLEN]; ^~~~~~~~~ ../../../src/ngmx/fgrid.c:345:9: warning: unused variable 'gmxlib' [-Wunused-variable] char *gmxlib; ^~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx' mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xdlghi.o ../../../src/ngmx/xdlghi.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx' mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o pulldown.o ../../../src/ngmx/pulldown.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx' mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xdlgitem.o ../../../src/ngmx/xdlgitem.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx' mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o buttons.o ../../../src/ngmx/buttons.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx' mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nleg.o ../../../src/ngmx/nleg.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx' mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o logo.o ../../../src/ngmx/logo.c In file included from ../../../src/ngmx/logo.c:45: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx' mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o dialogs.o ../../../src/ngmx/dialogs.c ../../../src/ngmx/dialogs.c:373:13: warning: 'in_set' defined but not used [-Wunused-function] static bool in_set(int i,int n,int set[]) ^~~~~~ ../../../src/ngmx/dialogs.c:240:13: warning: 'Extract' defined but not used [-Wunused-function] static void Extract(t_dlg *dlg,int ID,char *buf) ^~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx' mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o filter.o ../../../src/ngmx/filter.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx' mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o manager.o ../../../src/ngmx/manager.c ../../../src/ngmx/manager.c: In function 'set_file': ../../../src/ngmx/manager.c:182:18: warning: unused variable 'idum' [-Wunused-variable] int i,idum; ^~~~ ../../../src/ngmx/manager.c: In function 'step_man': ../../../src/ngmx/manager.c:312:15: warning: unused variable 'dum' [-Wunused-variable] int dum; ^~~ ../../../src/ngmx/manager.c:311:15: warning: unused variable 'rdum' [-Wunused-variable] real rdum; ^~~~ In file included from ../../../src/ngmx/manager.c:57: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../include/gstat.h:45, from ../../../src/ngmx/manager.c:56: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/ngmx/manager.c:55: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ In file included from ../../../src/ngmx/manager.c:48: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ ../../../src/ngmx/manager.c: In function 'set_file': ../../../src/ngmx/manager.c:213:20: warning: '%s' directive writing up to 255 bytes into a region of size 254 [-Wformat-overflow=] sprintf(buf,"%s: %s",*man->top.name,quote); ^~ ~~~~~ In file included from /usr/include/stdio.h:862, from ../../../include/sysstuff.h:51, from ../../../src/ngmx/manager.c:40: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 3 or more bytes (assuming 258) into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx' mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xdlg.o ../../../src/ngmx/xdlg.c make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx' mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o nmol.o ../../../src/ngmx/nmol.c ../../../src/ngmx/nmol.c: In function 'draw_box': ../../../src/ngmx/nmol.c:422:23: warning: unused variable 'tv2' [-Wunused-variable] iv2 vec2[NCUCEDGE],tv2; ^~~ In file included from ../../../src/ngmx/nmol.c:51: At top level: ../../../include/vec.h:835:13: warning: 'm_rveccopy' defined but not used [-Wunused-function] static void m_rveccopy(int dim, rvec *a, rvec *b) ^~~~~~~~~~ ../../../include/vec.h:829:13: warning: 'm_rvec_to_one' defined but not used [-Wunused-function] static void m_rvec_to_one(int dim, rvec *a) ^~~~~~~~~~~~~ ../../../include/vec.h:797:13: warning: 'm_rvecadd' defined but not used [-Wunused-function] static void m_rvecadd(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:787:13: warning: 'm_rvecsub' defined but not used [-Wunused-function] static void m_rvecsub(int dim, rvec *a, rvec *b, rvec *c) ^~~~~~~~~ ../../../include/vec.h:760:13: warning: 'calc_lll' defined but not used [-Wunused-function] static void calc_lll(rvec box,rvec lll) ^~~~~~~~ In file included from ../../../include/vec.h:121, from ../../../src/ngmx/nmol.c:51: ../../../include/maths.h:126:1: warning: 'gmx_numzero' defined but not used [-Wunused-function] gmx_numzero(double a) ^~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx' mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o molps.o ../../../src/ngmx/molps.c ../../../src/ngmx/molps.c: In function 'ps_draw_mol': ../../../src/ngmx/molps.c:204:15: warning: unused variable 'ntime' [-Wunused-variable] static int ntime=0; ^~~~~ ../../../src/ngmx/molps.c:203:15: warning: unused variable 'tstr' [-Wunused-variable] static char tstr[2][20]; ^~~~ At top level: ../../../src/ngmx/molps.c:203:15: warning: 'tstr' defined but not used [-Wunused-variable] ../../../src/ngmx/molps.c:204:15: warning: 'ntime' defined but not used [-Wunused-variable] static int ntime=0; ^~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx' mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o xrama.o ../../../src/ngmx/xrama.c ../../../src/ngmx/xrama.c: In function 'main': ../../../src/ngmx/xrama.c:319:15: warning: variable 'ramatop' set but not used [-Wunused-but-set-variable] t_topology *ramatop; ^~~~~~~ In file included from ../../../include/statutil.h:51, from ../../../src/ngmx/xrama.c:50: At top level: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/ngmx/xrama.c:44: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx' mpicc -DHAVE_CONFIG_H -I. -I../../../src/ngmx -I../../src -I../../../include -DGMXLIBDIR=\"/usr/share/top\" -g -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -c -o highway.o ../../../src/ngmx/highway.c In file included from ../../../include/statutil.h:51, from ../../../src/ngmx/highway.c:47: ../../../include/readinp.h:97:14: warning: 'argtp' defined but not used [-Wunused-variable] static char *argtp[etNR] = { ^~~~~ In file included from ../../../src/ngmx/highway.c:46: ../../../include/copyrite.h:61:20: warning: 'GPLText' defined but not used [-Wunused-variable] static const char *GPLText[] = { ^~~~~~~ ../../../include/copyrite.h:54:20: warning: 'CopyrightText' defined but not used [-Wunused-variable] static const char *CopyrightText[] = { ^~~~~~~~~~~~~ make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o ngmx ngmx.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath mkdir .libs DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/ngmx ngmx.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o -lgslcblas ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath creating ngmx make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o xrama xrama.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/xrama xrama.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o -lgslcblas ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath creating xrama make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx' /bin/sh ../../libtool --tag=CC --mode=link mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -lgslcblas -o highway highway.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o ../mdlib/libmd_mpi_d.la ../gmxlib/libgmx_mpi_d.la -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath DIE_RPATH_DIE="/usr/lib64:$DIE_RPATH_DIE" mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -o .libs/highway highway.o xutil.o xmb.o x11.o xdlghi.o fgrid.o xdlgitem.o popup.o pulldown.o xdlg.o manager.o buttons.o nmol.o nleg.o dialogs.o logo.o filter.o molps.o -lgslcblas ../mdlib/.libs/libmd_mpi_d.so ../gmxlib/.libs/libgmx_mpi_d.so -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath creating highway make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx' Making all in contrib make[3]: Nothing to be done for 'all'. Making all in admin make[1]: Nothing to be done for 'all'. Making all in scripts make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/scripts' cat ../../scripts/GMXRC.in | sed 's,@bindir\@,/usr/bin,' > GMXRC make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/scripts' make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/scripts' cat ../../scripts/GMXRC.csh.in | sed 's,@libdir\@,/usr/lib64,' | \ sed 's,@bindir\@,/usr/bin,' | \ sed 's,@datadir\@,/usr/share,' | \ sed 's,@mandir\@,/usr/share/man,' > GMXRC.csh make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/scripts' make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/scripts' cat ../../scripts/GMXRC.zsh.in | sed 's,@libdir\@,/usr/lib64,' | \ sed 's,@bindir\@,/usr/bin,' | \ sed 's,@datadir\@,/usr/share,' | \ sed 's,@mandir\@,/usr/share/man,' > GMXRC.zsh make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/scripts' make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/scripts' cat ../../scripts/GMXRC.bash.in | sed 's,@libdir\@,/usr/lib64,' | \ sed 's,@bindir\@,/usr/bin,' | \ sed 's,@datadir\@,/usr/share,' | \ sed 's,@mandir\@,/usr/share/man,' > GMXRC.bash make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/scripts' Making all in share Making all in top make[2]: Nothing to be done for 'all'. Making all in tutor Making all in nmr1 make[3]: Nothing to be done for 'all'. Making all in nmr2 make[3]: Nothing to be done for 'all'. Making all in speptide make[3]: Nothing to be done for 'all'. Making all in water make[3]: Nothing to be done for 'all'. Making all in gmxdemo make[3]: Nothing to be done for 'all'. Making all in methanol make[3]: Nothing to be done for 'all'. Making all in mixed make[3]: Nothing to be done for 'all'. make[3]: Nothing to be done for 'all-am'. Making all in template make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/template' cat ../../../share/template/Template.mak | \ sed 's,@LDFLAGS\@,-L/usr/lib64 -lgslcblas ,' | \ sed 's,@LIBS\@,-lmd_mpi_d -lgmx_mpi_d -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath ,' | \ sed 's,@CFLAGS\@,-g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -I/usr/include -I/usr/include/gromacs -DGMX_DOUBLE,' | \ sed 's,@CC\@,mpicc,' | \ sed 's,@host\@,x86_64-alt-linux-gnu,' >Makefile.x86_64-alt-linux-gnu_double sed: -e expression #1, char 36: unknown option to `s' make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/template' Making all in html Making all in . make[3]: Nothing to be done for 'all-am'. Making all in images make[3]: Nothing to be done for 'all'. Making all in online make[3]: Nothing to be done for 'all'. make[2]: Nothing to be done for 'all-am'. Making all in man Making all in man1 make[2]: Nothing to be done for 'all'. make[2]: Nothing to be done for 'all-am'. make[1]: Nothing to be done for 'all-am'. + popd ~/RPM/BUILD/gromacs-4.0.7 + exit 0 Executing(%install): /bin/sh -e /usr/src/tmp/rpm-tmp.40609 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + /bin/chmod -Rf u+rwX -- /usr/src/tmp/gromacs-buildroot + : + /bin/rm -rf -- /usr/src/tmp/gromacs-buildroot + PATH=/usr/libexec/rpm-build:/usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games + cd gromacs-4.0.7 + export 'OMPI_LDFLAGS=-Wl,--as-needed,-rpath,/usr/lib64/openmpi/lib -L/usr/lib64/openmpi/lib' + OMPI_LDFLAGS='-Wl,--as-needed,-rpath,/usr/lib64/openmpi/lib -L/usr/lib64/openmpi/lib' + pushd single ~/RPM/BUILD/gromacs-4.0.7/single ~/RPM/BUILD/gromacs-4.0.7 + make 'INSTALL=/usr/libexec/rpm-build/install -p' install DESTDIR=/usr/src/tmp/gromacs-buildroot make: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single' Making install in include make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/include' Making install in . make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/include' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/include' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/include/gromacs' /usr/libexec/rpm-build/install -p -m 644 ../../include/3dview.h ../../include/assert.h ../../include/atomprop.h ../../include/bondf.h ../../include/calcgrid.h ../../include/calch.h ../../include/calcmu.h ../../include/checkpoint.h ../../include/confio.h ../../include/constr.h ../../include/copyrite.h ../../include/coulomb.h ../../include/dihre.h ../../include/disre.h ../../include/domdec.h ../../include/domdec_network.h ../../include/do_fit.h ../../include/ebin.h ../../include/edsam.h ../../include/enxio.h ../../include/gmx_fatal.h ../../include/ffscanf.h ../../include/fftgrid.h ../../include/filenm.h ../../include/force.h ../../include/futil.h ../../include/gbutil.h ../../include/gmx_ana.h ../../include/gmx_arpack.h ../../include/gmx_blas.h ../../include/gmxcomplex.h ../../include/gmx_cyclecounter.h ../../include/gmxfio.h ../../include/gmx_fft.h ../../include/gmx_lapack.h ../../include/gmx_random.h ../../include/gmx_parallel_3dfft.h ../../include/gmx_system_xdr.h ../../include/gmx_thread.h ../../include/gmx_wallcycle.h '/usr/src/tmp/gromacs-buildroot/usr/include/gromacs' /usr/libexec/rpm-build/install -p -m 644 ../../include/gpp_atomtype.h ../../include/gpp_nextnb.h ../../include/grompp.h ../../include/gstat.h ../../include/index.h ../../include/invblock.h ../../include/macros.h ../../include/magic.h ../../include/main.h ../../include/maths.h ../../include/matio.h ../../include/mdatoms.h ../../include/mdebin.h ../../include/mdrun.h ../../include/mpelogging.h ../../include/mshift.h ../../include/mtop_util.h ../../include/mtxio.h ../../include/mvdata.h ../../include/names.h ../../include/network.h ../../include/nonbonded.h ../../include/nrama.h ../../include/nrjac.h ../../include/nrnb.h ../../include/nsgrid.h ../../include/ns.h ../../include/orires.h ../../include/partdec.h ../../include/pbc.h ../../include/pdbio.h ../../include/pdebug.h ../../include/perf_est.h ../../include/physics.h ../../include/pme.h ../../include/pppm.h ../../include/princ.h ../../include/pull.h ../../include/qmmm.h ../../include/random.h '/usr/src/tmp/gromacs-buildroot/usr/include/gromacs' /usr/libexec/rpm-build/install -p -m 644 ../../include/rbin.h ../../include/rdgroup.h ../../include/readcomp.h ../../include/readinp.h ../../include/reorder.h ../../include/rmpbc.h ../../include/shellfc.h ../../include/shift.h ../../include/smalloc.h ../../include/sortwater.h ../../include/sparsematrix.h ../../include/split.h ../../include/splitter.h ../../include/statusio.h ../../include/statutil.h ../../include/strdb.h ../../include/string2.h ../../include/struc2.h ../../include/symtab.h ../../include/sysstuff.h ../../include/tags.h ../../include/tgroup.h ../../include/topsort.h ../../include/tpxio.h ../../include/transfer.h ../../include/trnio.h ../../include/txtdump.h ../../include/typedefs.h ../../include/update.h ../../include/utils.h ../../include/vcm.h ../../include/vec.h ../../include/viewit.h ../../include/vsite.h ../../include/wgms.h ../../include/wman.h ../../include/writeps.h ../../include/xdrf.h ../../include/xtcio.h ../../include/xvgr.h '/usr/src/tmp/gromacs-buildroot/usr/include/gromacs' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/include' make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/include' Making install in types make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/include/types' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/include/types' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/include/gromacs/types' /usr/libexec/rpm-build/install -p -m 644 ../../../include/types/atoms.h ../../../include/types/forcerec.h ../../../include/types/ifunc.h ../../../include/types/mdatom.h ../../../include/types/simple.h ../../../include/types/block.h ../../../include/types/constr.h ../../../include/types/energy.h ../../../include/types/graph.h ../../../include/types/inputrec.h ../../../include/types/nblist.h ../../../include/types/ns.h ../../../include/types/nsgrid.h ../../../include/types/symtab.h ../../../include/types/commrec.h ../../../include/types/enums.h ../../../include/types/group.h ../../../include/types/ishift.h ../../../include/types/nbslist.h ../../../include/types/topology.h ../../../include/types/fcdata.h ../../../include/types/filenm.h ../../../include/types/idef.h ../../../include/types/matrix.h ../../../include/types/nrnb.h ../../../include/types/trx.h ../../../include/types/state.h ../../../include/types/pbc.h ../../../include/types/qmmmrec.h ../../../include/types/shellfc.h '/usr/src/tmp/gromacs-buildroot/usr/include/gromacs/types' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/include/types' make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/include/types' make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/include' Making install in src make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src' Making install in gmxlib make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' Making install in nonbonded make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded' Making install in nb_kernel_x86_64_sse make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' Making install in nb_kernel make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make install-am make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded' make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/nonbonded' Making install in gmx_blas make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_blas' Making install in gmx_lapack make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/gmx_lapack' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/lib64' /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p libgmx.la '/usr/src/tmp/gromacs-buildroot/usr/lib64' /usr/libexec/rpm-build/install -p .libs/libgmx.so.5.0.0 /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmx.so.5.0.0 (cd /usr/src/tmp/gromacs-buildroot/usr/lib64 && { ln -s -f libgmx.so.5.0.0 libgmx.so.5 || { rm -f libgmx.so.5 && ln -s libgmx.so.5.0.0 libgmx.so.5; }; }) (cd /usr/src/tmp/gromacs-buildroot/usr/lib64 && { ln -s -f libgmx.so.5.0.0 libgmx.so || { rm -f libgmx.so && ln -s libgmx.so.5.0.0 libgmx.so; }; }) /usr/libexec/rpm-build/install -p .libs/libgmx.lai /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmx.la libtool: install: warning: remember to run `libtool --finish /usr/lib64' make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib' Making install in mdlib make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/lib64' /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p libmd.la '/usr/src/tmp/gromacs-buildroot/usr/lib64' libtool: install: warning: relinking `libmd.la' (cd /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib; /bin/sh ../../libtool --tag=CC --mode=relink x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -version-info 5:0:0 -lgslcblas -o libmd.la -rpath /usr/lib64 calcmu.lo calcvir.lo constr.lo coupling.lo domdec.lo domdec_con.lo domdec_network.lo domdec_setup.lo domdec_top.lo ebin.lo edsam.lo ewald.lo fftgrid.lo force.lo ghat.lo init.lo mdatom.lo mdebin.lo minimize.lo mvxvf.lo ns.lo nsgrid.lo perf_est.lo pme.lo pme_pp.lo pppm.lo partdec.lo pull.lo pullutil.lo rf_util.lo shakef.lo sim_util.lo shellfc.lo stat.lo tables.lo tgroup.lo update.lo vcm.lo vsite.lo wall.lo wnblist.lo csettle.lo clincs.lo qmmm.lo gmx_fft.lo gmx_parallel_3dfft.lo gmx_wallcycle.lo qm_gaussian.lo gmx_fft_fftw3.lo ../gmxlib/libgmx.la -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -inst-prefix-dir /usr/src/tmp/gromacs-buildroot) x86_64-alt-linux-gcc -shared .libs/calcmu.o .libs/calcvir.o .libs/constr.o .libs/coupling.o .libs/domdec.o .libs/domdec_con.o .libs/domdec_network.o .libs/domdec_setup.o .libs/domdec_top.o .libs/ebin.o .libs/edsam.o .libs/ewald.o .libs/fftgrid.o .libs/force.o .libs/ghat.o .libs/init.o .libs/mdatom.o .libs/mdebin.o .libs/minimize.o .libs/mvxvf.o .libs/ns.o .libs/nsgrid.o .libs/perf_est.o .libs/pme.o .libs/pme_pp.o .libs/pppm.o .libs/partdec.o .libs/pull.o .libs/pullutil.o .libs/rf_util.o .libs/shakef.o .libs/sim_util.o .libs/shellfc.o .libs/stat.o .libs/tables.o .libs/tgroup.o .libs/update.o .libs/vcm.o .libs/vsite.o .libs/wall.o .libs/wnblist.o .libs/csettle.o .libs/clincs.o .libs/qmmm.o .libs/gmx_fft.o .libs/gmx_parallel_3dfft.o .libs/gmx_wallcycle.o .libs/qm_gaussian.o .libs/gmx_fft_fftw3.o -lgslcblas -L/usr/src/tmp/gromacs-buildroot/usr/lib64 -L/usr/lib64 -lgmx -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wl,-soname -Wl,libmd.so.5 -o .libs/libmd.so.5.0.0 /usr/libexec/rpm-build/install -p .libs/libmd.so.5.0.0T /usr/src/tmp/gromacs-buildroot/usr/lib64/libmd.so.5.0.0 (cd /usr/src/tmp/gromacs-buildroot/usr/lib64 && { ln -s -f libmd.so.5.0.0 libmd.so.5 || { rm -f libmd.so.5 && ln -s libmd.so.5.0.0 libmd.so.5; }; }) (cd /usr/src/tmp/gromacs-buildroot/usr/lib64 && { ln -s -f libmd.so.5.0.0 libmd.so || { rm -f libmd.so && ln -s libmd.so.5.0.0 libmd.so; }; }) /usr/libexec/rpm-build/install -p .libs/libmd.lai /usr/src/tmp/gromacs-buildroot/usr/lib64/libmd.la libtool: install: warning: remember to run `libtool --finish /usr/lib64' make install-exec-hook make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' make[4]: Nothing to be done for 'install-exec-hook'. make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib' Making install in kernel make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/bin' /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p grompp mdrun tpbconv pdb2gmx protonate luck gmxdump gmxcheck x2top '/usr/src/tmp/gromacs-buildroot/usr/bin' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/grompp /usr/src/tmp/gromacs-buildroot/usr/bin/grompp libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/mdrun /usr/src/tmp/gromacs-buildroot/usr/bin/mdrun libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/tpbconv /usr/src/tmp/gromacs-buildroot/usr/bin/tpbconv libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/pdb2gmx /usr/src/tmp/gromacs-buildroot/usr/bin/pdb2gmx libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/protonate /usr/src/tmp/gromacs-buildroot/usr/bin/protonate libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/luck /usr/src/tmp/gromacs-buildroot/usr/bin/luck libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/gmxdump /usr/src/tmp/gromacs-buildroot/usr/bin/gmxdump libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/gmxcheck /usr/src/tmp/gromacs-buildroot/usr/bin/gmxcheck libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/x2top /usr/src/tmp/gromacs-buildroot/usr/bin/x2top make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/kernel' Making install in tools make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/lib64' /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p libgmxana.la '/usr/src/tmp/gromacs-buildroot/usr/lib64' libtool: install: warning: relinking `libgmxana.la' (cd /usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools; /bin/sh ../../libtool --tag=CC --mode=relink x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -version-info 5:0:0 -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o libgmxana.la -rpath /usr/lib64 autocorr.lo expfit.lo polynomials.lo levenmar.lo anadih.lo pp2shift.lo dlist.lo eigio.lo lsq.lo cmat.lo eigensolver.lo nsc.lo hxprops.lo fitahx.lo gmx_analyze.lo gmx_anaeig.lo gmx_angle.lo gmx_bond.lo gmx_bundle.lo gmx_chi.lo gmx_cluster.lo gmx_confrms.lo gmx_covar.lo gmx_current.lo gmx_density.lo gmx_densmap.lo gmx_dih.lo gmx_dielectric.lo gmx_kinetics.lo gmx_spatial.lo gmx_dipoles.lo gmx_disre.lo gmx_dist.lo gmx_dyndom.lo gmx_enemat.lo gmx_energy.lo gmx_lie.lo gmx_filter.lo gmx_gyrate.lo gmx_h2order.lo gmx_hbond.lo gmx_helix.lo gmx_mindist.lo gmx_msd.lo gmx_morph.lo gmx_nmeig.lo gmx_nmens.lo gmx_order.lo gmx_principal.lo gmx_polystat.lo gmx_potential.lo gmx_rama.lo gmx_rdf.lo gmx_rms.lo gmx_rmsdist.lo gmx_rmsf.lo gmx_rotacf.lo gmx_saltbr.lo gmx_sas.lo gmx_sdf.lo gmx_sgangle.lo gmx_sorient.lo gmx_spol.lo gmx_tcaf.lo gmx_traj.lo gmx_velacc.lo gmx_helixorient.lo gmx_clustsize.lo gmx_mdmat.lo gmx_wham.lo correl.lo gmx_sham.lo gmx_nmtraj.lo gmx_trjconv.lo gmx_trjcat.lo gmx_trjorder.lo gmx_xpm2ps.lo gmx_editconf.lo gmx_genbox.lo gmx_genion.lo gmx_genconf.lo gmx_genpr.lo gmx_eneconv.lo gmx_vanhove.lo gmx_wheel.lo addconf.lo calcpot.lo edittop.lo ../gmxlib/libgmx.la ../mdlib/libmd.la -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -lmpi -lopen-pal -lopen-rte -inst-prefix-dir /usr/src/tmp/gromacs-buildroot) x86_64-alt-linux-gcc -shared .libs/autocorr.o .libs/expfit.o .libs/polynomials.o .libs/levenmar.o .libs/anadih.o .libs/pp2shift.o .libs/dlist.o .libs/eigio.o .libs/lsq.o .libs/cmat.o .libs/eigensolver.o .libs/nsc.o .libs/hxprops.o .libs/fitahx.o .libs/gmx_analyze.o .libs/gmx_anaeig.o .libs/gmx_angle.o .libs/gmx_bond.o .libs/gmx_bundle.o .libs/gmx_chi.o .libs/gmx_cluster.o .libs/gmx_confrms.o .libs/gmx_covar.o .libs/gmx_current.o .libs/gmx_density.o .libs/gmx_densmap.o .libs/gmx_dih.o .libs/gmx_dielectric.o .libs/gmx_kinetics.o .libs/gmx_spatial.o .libs/gmx_dipoles.o .libs/gmx_disre.o .libs/gmx_dist.o .libs/gmx_dyndom.o .libs/gmx_enemat.o .libs/gmx_energy.o .libs/gmx_lie.o .libs/gmx_filter.o .libs/gmx_gyrate.o .libs/gmx_h2order.o .libs/gmx_hbond.o .libs/gmx_helix.o .libs/gmx_mindist.o .libs/gmx_msd.o .libs/gmx_morph.o .libs/gmx_nmeig.o .libs/gmx_nmens.o .libs/gmx_order.o .libs/gmx_principal.o .libs/gmx_polystat.o .libs/gmx_potential.o .libs/gmx_rama.o .libs/gmx_rdf.o .libs/gmx_rms.o .libs/gmx_rmsdist.o .libs/gmx_rmsf.o .libs/gmx_rotacf.o .libs/gmx_saltbr.o .libs/gmx_sas.o .libs/gmx_sdf.o .libs/gmx_sgangle.o .libs/gmx_sorient.o .libs/gmx_spol.o .libs/gmx_tcaf.o .libs/gmx_traj.o .libs/gmx_velacc.o .libs/gmx_helixorient.o .libs/gmx_clustsize.o .libs/gmx_mdmat.o .libs/gmx_wham.o .libs/correl.o .libs/gmx_sham.o .libs/gmx_nmtraj.o .libs/gmx_trjconv.o .libs/gmx_trjcat.o .libs/gmx_trjorder.o .libs/gmx_xpm2ps.o .libs/gmx_editconf.o .libs/gmx_genbox.o .libs/gmx_genion.o .libs/gmx_genconf.o .libs/gmx_genpr.o .libs/gmx_eneconv.o .libs/gmx_vanhove.o .libs/gmx_wheel.o .libs/addconf.o .libs/calcpot.o .libs/edittop.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs -L/usr/lib64/openmpi/lib -L/usr/src/tmp/gromacs-buildroot/usr/lib64 -L/usr/lib64 -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx -lmd -L/usr/src/tmp/gromacs-buildroot/usr/lib64/openmpi/lib -lmpi -lopen-pal -lopen-rte -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wl,-Rpath:/usr/lib64/openmpi/lib -Wl,-soname -Wl,libgmxana.so.5 -o .libs/libgmxana.so.5.0.0 /usr/libexec/rpm-build/install -p .libs/libgmxana.so.5.0.0T /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana.so.5.0.0 (cd /usr/src/tmp/gromacs-buildroot/usr/lib64 && { ln -s -f libgmxana.so.5.0.0 libgmxana.so.5 || { rm -f libgmxana.so.5 && ln -s libgmxana.so.5.0.0 libgmxana.so.5; }; }) (cd /usr/src/tmp/gromacs-buildroot/usr/lib64 && { ln -s -f libgmxana.so.5.0.0 libgmxana.so || { rm -f libgmxana.so && ln -s libgmxana.so.5.0.0 libgmxana.so; }; }) /usr/libexec/rpm-build/install -p .libs/libgmxana.lai /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana.la libtool: install: warning: remember to run `libtool --finish /usr/lib64' /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/bin' /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p do_dssp editconf eneconv genbox genconf genrestr g_nmtraj make_ndx mk_angndx trjcat trjconv trjorder wheel xpm2ps genion anadock make_edi g_analyze g_anaeig g_angle g_bond g_bundle g_chi g_cluster g_confrms g_covar g_current g_density g_densmap g_dih g_dielectric g_helixorient g_principal g_dipoles g_disre g_dist g_dyndom g_enemat g_energy g_lie g_filter g_gyrate g_h2order g_hbond g_helix g_mindist g_msd g_morph g_nmeig g_nmens g_order g_polystat g_potential g_rama g_rdf g_rms g_rmsdist g_rmsf g_rotacf g_saltbr g_sas g_sgangle g_sham g_sorient g_spol g_sdf g_spatial g_tcaf g_traj g_vanhove g_velacc g_clustsize g_mdmat g_wham g_kinetics sigeps '/usr/src/tmp/gromacs-buildroot/usr/bin' libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/do_dssp /usr/src/tmp/gromacs-buildroot/usr/bin/do_dssp libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/editconf /usr/src/tmp/gromacs-buildroot/usr/bin/editconf libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/eneconv /usr/src/tmp/gromacs-buildroot/usr/bin/eneconv libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/genbox /usr/src/tmp/gromacs-buildroot/usr/bin/genbox libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/genconf /usr/src/tmp/gromacs-buildroot/usr/bin/genconf libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/genrestr /usr/src/tmp/gromacs-buildroot/usr/bin/genrestr libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_nmtraj /usr/src/tmp/gromacs-buildroot/usr/bin/g_nmtraj libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/make_ndx /usr/src/tmp/gromacs-buildroot/usr/bin/make_ndx libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/mk_angndx /usr/src/tmp/gromacs-buildroot/usr/bin/mk_angndx libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/trjcat /usr/src/tmp/gromacs-buildroot/usr/bin/trjcat libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/trjconv /usr/src/tmp/gromacs-buildroot/usr/bin/trjconv libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/trjorder /usr/src/tmp/gromacs-buildroot/usr/bin/trjorder libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/wheel /usr/src/tmp/gromacs-buildroot/usr/bin/wheel libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/xpm2ps /usr/src/tmp/gromacs-buildroot/usr/bin/xpm2ps libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/genion /usr/src/tmp/gromacs-buildroot/usr/bin/genion libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/anadock /usr/src/tmp/gromacs-buildroot/usr/bin/anadock libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/make_edi /usr/src/tmp/gromacs-buildroot/usr/bin/make_edi libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_analyze /usr/src/tmp/gromacs-buildroot/usr/bin/g_analyze libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_anaeig /usr/src/tmp/gromacs-buildroot/usr/bin/g_anaeig libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_angle /usr/src/tmp/gromacs-buildroot/usr/bin/g_angle libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_bond /usr/src/tmp/gromacs-buildroot/usr/bin/g_bond libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_bundle /usr/src/tmp/gromacs-buildroot/usr/bin/g_bundle libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_chi /usr/src/tmp/gromacs-buildroot/usr/bin/g_chi libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_cluster /usr/src/tmp/gromacs-buildroot/usr/bin/g_cluster libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_confrms /usr/src/tmp/gromacs-buildroot/usr/bin/g_confrms libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_covar /usr/src/tmp/gromacs-buildroot/usr/bin/g_covar libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_current /usr/src/tmp/gromacs-buildroot/usr/bin/g_current libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_density /usr/src/tmp/gromacs-buildroot/usr/bin/g_density libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_densmap /usr/src/tmp/gromacs-buildroot/usr/bin/g_densmap libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_dih /usr/src/tmp/gromacs-buildroot/usr/bin/g_dih libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_dielectric /usr/src/tmp/gromacs-buildroot/usr/bin/g_dielectric libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_helixorient /usr/src/tmp/gromacs-buildroot/usr/bin/g_helixorient libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_principal /usr/src/tmp/gromacs-buildroot/usr/bin/g_principal libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_dipoles /usr/src/tmp/gromacs-buildroot/usr/bin/g_dipoles libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_disre /usr/src/tmp/gromacs-buildroot/usr/bin/g_disre libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_dist /usr/src/tmp/gromacs-buildroot/usr/bin/g_dist libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_dyndom /usr/src/tmp/gromacs-buildroot/usr/bin/g_dyndom libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_enemat /usr/src/tmp/gromacs-buildroot/usr/bin/g_enemat libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_energy /usr/src/tmp/gromacs-buildroot/usr/bin/g_energy libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_lie /usr/src/tmp/gromacs-buildroot/usr/bin/g_lie libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_filter /usr/src/tmp/gromacs-buildroot/usr/bin/g_filter libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_gyrate /usr/src/tmp/gromacs-buildroot/usr/bin/g_gyrate libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_h2order /usr/src/tmp/gromacs-buildroot/usr/bin/g_h2order libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_hbond /usr/src/tmp/gromacs-buildroot/usr/bin/g_hbond libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_helix /usr/src/tmp/gromacs-buildroot/usr/bin/g_helix libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_mindist /usr/src/tmp/gromacs-buildroot/usr/bin/g_mindist libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_msd /usr/src/tmp/gromacs-buildroot/usr/bin/g_msd libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_morph /usr/src/tmp/gromacs-buildroot/usr/bin/g_morph libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_nmeig /usr/src/tmp/gromacs-buildroot/usr/bin/g_nmeig libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_nmens /usr/src/tmp/gromacs-buildroot/usr/bin/g_nmens libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_order /usr/src/tmp/gromacs-buildroot/usr/bin/g_order libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_polystat /usr/src/tmp/gromacs-buildroot/usr/bin/g_polystat libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_potential /usr/src/tmp/gromacs-buildroot/usr/bin/g_potential libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_rama /usr/src/tmp/gromacs-buildroot/usr/bin/g_rama libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_rdf /usr/src/tmp/gromacs-buildroot/usr/bin/g_rdf libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_rms /usr/src/tmp/gromacs-buildroot/usr/bin/g_rms libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_rmsdist /usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsdist libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_rmsf /usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsf libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_rotacf /usr/src/tmp/gromacs-buildroot/usr/bin/g_rotacf libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_saltbr /usr/src/tmp/gromacs-buildroot/usr/bin/g_saltbr libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_sas /usr/src/tmp/gromacs-buildroot/usr/bin/g_sas libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_sgangle /usr/src/tmp/gromacs-buildroot/usr/bin/g_sgangle libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_sham /usr/src/tmp/gromacs-buildroot/usr/bin/g_sham libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_sorient /usr/src/tmp/gromacs-buildroot/usr/bin/g_sorient libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_spol /usr/src/tmp/gromacs-buildroot/usr/bin/g_spol libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_sdf /usr/src/tmp/gromacs-buildroot/usr/bin/g_sdf libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_spatial /usr/src/tmp/gromacs-buildroot/usr/bin/g_spatial libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_tcaf /usr/src/tmp/gromacs-buildroot/usr/bin/g_tcaf libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_traj /usr/src/tmp/gromacs-buildroot/usr/bin/g_traj libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_vanhove /usr/src/tmp/gromacs-buildroot/usr/bin/g_vanhove libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_velacc /usr/src/tmp/gromacs-buildroot/usr/bin/g_velacc libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_clustsize /usr/src/tmp/gromacs-buildroot/usr/bin/g_clustsize libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_mdmat /usr/src/tmp/gromacs-buildroot/usr/bin/g_mdmat libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_wham /usr/src/tmp/gromacs-buildroot/usr/bin/g_wham libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_kinetics /usr/src/tmp/gromacs-buildroot/usr/bin/g_kinetics libtool: install: warning: `libgmxana.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/gmxlib/.libs/libgmx.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/mdlib/.libs/libmd.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/sigeps /usr/src/tmp/gromacs-buildroot/usr/bin/sigeps make install-exec-hook make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' libname="libgmxana"; \ nompi="`echo $libname | sed -e 's,_mpi,,'`"; \ libdir="/usr/lib64"; \ if echo $libname | grep mpi >/dev/null ; then \ (cd $libdir && test -e $libname.a -a ! -e $nompi.a && ln -s $libname.a $nompi.a ; exit 0); \ (cd $libdir && test -e $libname.so -a ! -e $nompi.so && ln -s $libname.so $nompi.so ; exit 0); \ fi; make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/tools' Making install in ngmx make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx' /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/bin' /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p ngmx xrama highway '/usr/src/tmp/gromacs-buildroot/usr/bin' libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/ngmx /usr/src/tmp/gromacs-buildroot/usr/bin/ngmx libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/xrama /usr/src/tmp/gromacs-buildroot/usr/bin/xrama libtool: install: warning: `../mdlib/libmd.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/highway /usr/src/tmp/gromacs-buildroot/usr/bin/highway make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx' make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/ngmx' Making install in contrib make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/contrib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/contrib' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/contrib' make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src/contrib' make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src' make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src' make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/src' Making install in admin make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/admin' make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/admin' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/admin' make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/admin' Making install in scripts make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/scripts' make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/scripts' /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/bin' /usr/libexec/rpm-build/install -p GMXRC GMXRC.csh GMXRC.bash GMXRC.zsh '/usr/src/tmp/gromacs-buildroot/usr/bin' /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/bin' /usr/libexec/rpm-build/install -p ../../scripts/completion.csh ../../scripts/completion.bash ../../scripts/completion.zsh ../../scripts/demux.pl ../../scripts/xplor2gmx.pl '/usr/src/tmp/gromacs-buildroot/usr/bin' make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/scripts' make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/scripts' Making install in share make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share' Making install in top make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/top' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/top' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/top' /usr/libexec/rpm-build/install -p -m 644 ../../../share/top/ffgmx.itp ../../../share/top/ffgmxnb.itp ../../../share/top/ffgmxbon.itp ../../../share/top/ffgmx.atp ../../../share/top/ffgmx.hdb ../../../share/top/ffgmx.rtp ../../../share/top/ffgmx-c.tdb ../../../share/top/ffgmx-n.tdb ../../../share/top/ffgmx2.itp ../../../share/top/ffgmx2nb.itp ../../../share/top/ffgmx2bon.itp ../../../share/top/ffgmx2.atp ../../../share/top/ffgmx2.hdb ../../../share/top/ffgmx2.rtp ../../../share/top/ffgmx2-c.tdb ../../../share/top/ffgmx2-n.tdb ../../../share/top/ffG43a1.itp ../../../share/top/ffG43a1nb.itp ../../../share/top/ffG43a1bon.itp ../../../share/top/ffG43a1.atp ../../../share/top/ffG43a1.hdb ../../../share/top/ffG43a1.rtp ../../../share/top/ffG43a1-c.tdb ../../../share/top/ffG43a1-n.tdb ../../../share/top/ffG43a2.itp ../../../share/top/ffG43a2nb.itp ../../../share/top/ffG43a2bon.itp ../../../share/top/ffG43a2.atp ../../../share/top/ffG43a2.hdb ../../../share/top/ffG43a2.rtp ../../../share/top/ffG43a2-c.tdb ../../../share/top/ffG43a2-n.tdb ../../../share/top/ffgmx.ddb ../../../share/top/ffgmx2.ddb ../../../share/top/ffG43a1.ddb ../../../share/top/ffG43a2.ddb ../../../share/top/ffG45a3-c.tdb ../../../share/top/ffG45a3.atp ../../../share/top/ffG45a3.hdb ../../../share/top/ffG45a3.rtp '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/top' /usr/libexec/rpm-build/install -p -m 644 ../../../share/top/ffG45a3nb.itp ../../../share/top/ffG45a3-n.tdb ../../../share/top/ffG45a3.ddb ../../../share/top/ffG45a3.itp ../../../share/top/ffG45a3bon.itp ../../../share/top/ffG53a5-c.tdb ../../../share/top/ffG53a5.atp ../../../share/top/ffG53a5.hdb ../../../share/top/ffG53a5.rtp ../../../share/top/ffG53a5nb.itp ../../../share/top/ffG53a5-n.tdb ../../../share/top/ffG53a5.ddb ../../../share/top/ffG53a5.itp ../../../share/top/ffG53a5bon.itp ../../../share/top/ffG53a5.n2t ../../../share/top/ffG53a6-c.tdb ../../../share/top/ffG53a6.atp ../../../share/top/ffG53a6.hdb ../../../share/top/ffG53a6.rtp ../../../share/top/ffG53a6nb.itp ../../../share/top/ffG53a6-n.tdb ../../../share/top/ffG53a6.ddb ../../../share/top/ffG53a6.itp ../../../share/top/ffG53a6bon.itp ../../../share/top/ffoplsaa.atp ../../../share/top/ffoplsaa.itp ../../../share/top/ffoplsaabon.itp ../../../share/top/ffoplsaanb.itp ../../../share/top/ffoplsaa.hdb ../../../share/top/ffoplsaa-n.tdb ../../../share/top/ffoplsaa-c.tdb ../../../share/top/ffoplsaa.rtp ../../../share/top/ffoplsaa.ddb ../../../share/top/ffoplsaa.n2t ../../../share/top/ffencads-c.tdb ../../../share/top/ffencads.itp ../../../share/top/ffencadv-c.tdb ../../../share/top/ffencadv.itp ../../../share/top/ffencads-n.tdb ../../../share/top/ffencads.rtp '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/top' /usr/libexec/rpm-build/install -p -m 644 ../../../share/top/ffencadv-n.tdb ../../../share/top/ffencadv.rtp ../../../share/top/ffencads.atp ../../../share/top/ffencadsbon.itp ../../../share/top/ffencadv.atp ../../../share/top/ffencadvbon.itp ../../../share/top/ffencads.hdb ../../../share/top/ffencadsnb.itp ../../../share/top/ffencadv.hdb ../../../share/top/ffencadvnb.itp ../../../share/top/1mlg.itp ../../../share/top/2mlg.itp ../../../share/top/benzamide.itp ../../../share/top/bondadd.itp ../../../share/top/buck.itp ../../../share/top/decane.itp ../../../share/top/dlg.itp ../../../share/top/dmso.itp ../../../share/top/fa.itp ../../../share/top/ff_dum.itp ../../../share/top/flexspc.itp ../../../share/top/flexspce.itp ../../../share/top/flexwat-ferguson.itp ../../../share/top/h2p4o13.itp ../../../share/top/h2p8o25.itp ../../../share/top/h2po4.itp ../../../share/top/ions.itp ../../../share/top/methanol.itp ../../../share/top/spc.itp ../../../share/top/spce.itp ../../../share/top/tfe.itp ../../../share/top/tip3p.itp ../../../share/top/tip4p.itp ../../../share/top/urea.itp ../../../share/top/dgsolv.dat ../../../share/top/electroneg.dat ../../../share/top/dec50.gro ../../../share/top/dmso.gro ../../../share/top/spc216.gro ../../../share/top/tip4p.gro '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/top' /usr/libexec/rpm-build/install -p -m 644 ../../../share/top/urea+h2o.gro ../../../share/top/f3c.itp ../../../share/top/aminoacids.dat ../../../share/top/atommass.dat ../../../share/top/bromacs.dat ../../../share/top/ca-shift.dat ../../../share/top/cb-shift.dat ../../../share/top/co-shift.dat ../../../share/top/edissoc.dat ../../../share/top/FF.dat ../../../share/top/gurgle.dat ../../../share/top/ha-shift.dat ../../../share/top/links.dat ../../../share/top/phbres.dat ../../../share/top/random.dat ../../../share/top/refi_aa.dat ../../../share/top/specbond.dat ../../../share/top/surface.dat ../../../share/top/vdwradii.dat ../../../share/top/xlateat.dat ../../../share/top/highway.dat ../../../share/top/export.dlg ../../../share/top/bonds.dlg ../../../share/top/ss.map ../../../share/top/ps.m2p ../../../share/top/table6-10.xvg ../../../share/top/table6-11.xvg ../../../share/top/table6-12.xvg ../../../share/top/table6-8.xvg ../../../share/top/table6-9.xvg ../../../share/top/atom_nom.tbl ../../../share/top/gromacs.dtd ../../../share/top/tip5p.gro ../../../share/top/tip5p.itp ../../../share/top/sw.itp ../../../share/top/elements.dat '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/top' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/top' make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/top' Making install in tutor make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor' Making install in nmr1 make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/nmr1' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/nmr1' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/nmr1' /usr/libexec/rpm-build/install -p -m 644 ../../../../share/tutor/nmr1/conf.gro ../../../../share/tutor/nmr1/grompp.mdp ../../../../share/tutor/nmr1/pep.pdb ../../../../share/tutor/nmr1/topol.top '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/nmr1' make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/nmr1' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/nmr1' Making install in nmr2 make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/nmr2' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/nmr2' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/nmr2' /usr/libexec/rpm-build/install -p -m 644 ../../../../share/tutor/nmr2/conf.gro ../../../../share/tutor/nmr2/genconf.gcp ../../../../share/tutor/nmr2/grompp.mdp ../../../../share/tutor/nmr2/pep.pdb ../../../../share/tutor/nmr2/topol.top '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/nmr2' make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/nmr2' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/nmr2' Making install in speptide make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/speptide' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/speptide' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/speptide' /usr/libexec/rpm-build/install -p -m 644 ../../../../share/tutor/speptide/em.mdp ../../../../share/tutor/speptide/full.mdp ../../../../share/tutor/speptide/pr.mdp ../../../../share/tutor/speptide/speptide.pdb '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/speptide' make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/speptide' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/speptide' Making install in water make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/water' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/water' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/water' /usr/libexec/rpm-build/install -p -m 644 ../../../../share/tutor/water/index.ndx ../../../../share/tutor/water/conf.gro ../../../../share/tutor/water/spc216.pdb ../../../../share/tutor/water/grompp.mdp ../../../../share/tutor/water/topol.top '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/water' make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/water' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/water' Making install in gmxdemo make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/gmxdemo' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/gmxdemo' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/gmxdemo' /usr/libexec/rpm-build/install -p -m 644 ../../../../share/tutor/gmxdemo/cpeptide.pdb '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/gmxdemo' /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/gmxdemo' /usr/libexec/rpm-build/install -p ../../../../share/tutor/gmxdemo/demo '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/gmxdemo' make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/gmxdemo' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/gmxdemo' Making install in methanol make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/methanol' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/methanol' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/methanol' /usr/libexec/rpm-build/install -p -m 644 ../../../../share/tutor/methanol/index.ndx ../../../../share/tutor/methanol/conf.gro ../../../../share/tutor/methanol/methanol.pdb ../../../../share/tutor/methanol/grompp.mdp ../../../../share/tutor/methanol/topol.top ../../../../share/tutor/methanol/methanol.itp '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/methanol' make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/methanol' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/methanol' Making install in mixed make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/mixed' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/mixed' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/mixed' /usr/libexec/rpm-build/install -p -m 644 ../../../../share/tutor/mixed/index.ndx ../../../../share/tutor/mixed/conf.gro ../../../../share/tutor/mixed/mixed.pdb ../../../../share/tutor/mixed/grompp.mdp ../../../../share/tutor/mixed/topol.top '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/mixed' make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/mixed' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor/mixed' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor' make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/tutor' Making install in template make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/template' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/template' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/template' /usr/libexec/rpm-build/install -p -m 644 ../../../share/template/template.c ../../../share/template/README Makefile.x86_64-alt-linux-gnu '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/template' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/template' make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/template' Making install in html make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/html' Making install in . make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/html' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/html' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html' /usr/libexec/rpm-build/install -p -m 644 ../../../share/html/online.html ../../../share/html/gmxfaq.html '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html' make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/html' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/html' Making install in images make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/html/images' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/html/images' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html/images' /usr/libexec/rpm-build/install -p -m 644 ../../../../share/html/images/features.gif ../../../../share/html/images/flow_leftrightup.gif ../../../../share/html/images/flow_vrule.gif ../../../../share/html/images/flow_down.gif ../../../../share/html/images/flow_leftup.gif ../../../../share/html/images/links.gif ../../../../share/html/images/articles.gif ../../../../share/html/images/flow_downleft.gif ../../../../share/html/images/flow_right+left.gif ../../../../share/html/images/mail.gif ../../../../share/html/images/bench.gif ../../../../share/html/images/flow_hline.gif ../../../../share/html/images/flow_right.gif ../../../../share/html/images/manual.gif ../../../../share/html/images/charts_down.gif ../../../../share/html/images/flow_left.gif ../../../../share/html/images/flow_rightleftdown.gif ../../../../share/html/images/gmxlogo_small.jpg ../../../../share/html/images/charts_up.gif ../../../../share/html/images/flow_leftright.gif ../../../../share/html/images/flow_uprightleft.gif ../../../../share/html/images/software.gif ../../../../share/html/images/faq.gif ../../../../share/html/images/flow_leftrightdown.gif ../../../../share/html/images/flow_vline.gif ../../../../share/html/images/topologies.gif ../../../../share/html/images/plotje.gif ../../../../share/html/images/xvgr.gif ../../../../share/html/images/1ctf-0.jpg ../../../../share/html/images/1ctf-0.2.jpg ../../../../share/html/images/1ctf-0.5.jpg ../../../../share/html/images/1ctf-1.jpg ../../../../share/html/images/1ctf-4.jpg ../../../../share/html/images/1ctf-10.jpg '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html/images' make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/html/images' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/html/images' Making install in online make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/html/online' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/html/online' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html/online' /usr/libexec/rpm-build/install -p -m 644 ../../../../share/html/online/cpt.html ../../../../share/html/online/dat.html ../../../../share/html/online/g_disre.html ../../../../share/html/online/g_sorient.html ../../../../share/html/online/ndx.html ../../../../share/html/online/dlg.html ../../../../share/html/online/g_dist.html ../../../../share/html/online/g_tcaf.html ../../../../share/html/online/ngmx.html ../../../../share/html/online/do_dssp.html ../../../../share/html/online/g_dyndom.html ../../../../share/html/online/g_traj.html ../../../../share/html/online/edi.html ../../../../share/html/online/g_enemat.html ../../../../share/html/online/g_velacc.html ../../../../share/html/online/options.html ../../../../share/html/online/editconf.html ../../../../share/html/online/g_energy.html ../../../../share/html/online/genbox.html ../../../../share/html/online/out.html ../../../../share/html/online/edo.html ../../../../share/html/online/g_gyrate.html ../../../../share/html/online/genconf.html ../../../../share/html/online/pdb.html ../../../../share/html/online/edr.html ../../../../share/html/online/g_h2order.html ../../../../share/html/online/genion.html ../../../../share/html/online/pdb2gmx.html ../../../../share/html/online/ene.html ../../../../share/html/online/g_hbond.html ../../../../share/html/online/genpr.html ../../../../share/html/online/protonate.html ../../../../share/html/online/eneconv.html ../../../../share/html/online/g_helix.html ../../../../share/html/online/getting_started.html ../../../../share/html/online/rtp.html ../../../../share/html/online/eps.html ../../../../share/html/online/g_lie.html ../../../../share/html/online/gmxcheck.html ../../../../share/html/online/tex.html '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html/online' /usr/libexec/rpm-build/install -p -m 644 ../../../../share/html/online/files.html ../../../../share/html/online/g_mdmat.html ../../../../share/html/online/gmxdump.html ../../../../share/html/online/top.html ../../../../share/html/online/flow.html ../../../../share/html/online/g_mindist.html ../../../../share/html/online/gro.html ../../../../share/html/online/tpa.html ../../../../share/html/online/g87.html ../../../../share/html/online/g_morph.html ../../../../share/html/online/grompp.html ../../../../share/html/online/tpb.html ../../../../share/html/online/g96.html ../../../../share/html/online/g_msd.html ../../../../share/html/online/hat.html ../../../../share/html/online/tpbconv.html ../../../../share/html/online/g_anaeig.html ../../../../share/html/online/g_nmeig.html ../../../../share/html/online/highway.html ../../../../share/html/online/tpr.html ../../../../share/html/online/g_analyze.html ../../../../share/html/online/g_nmens.html ../../../../share/html/online/include_bot.html ../../../../share/html/online/trj.html ../../../../share/html/online/g_angle.html ../../../../share/html/online/g_order.html ../../../../share/html/online/include_top.html ../../../../share/html/online/trjcat.html ../../../../share/html/online/g_bond.html ../../../../share/html/online/g_potential.html ../../../../share/html/online/itp.html ../../../../share/html/online/trjconv.html ../../../../share/html/online/g_bundle.html ../../../../share/html/online/g_rama.html ../../../../share/html/online/log.html ../../../../share/html/online/trjorder.html ../../../../share/html/online/g_chi.html ../../../../share/html/online/g_rdf.html ../../../../share/html/online/m2p.html ../../../../share/html/online/trr.html '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html/online' /usr/libexec/rpm-build/install -p -m 644 ../../../../share/html/online/g_cluster.html ../../../../share/html/online/g_rms.html ../../../../share/html/online/make_ndx.html ../../../../share/html/online/wheel.html ../../../../share/html/online/g_confrms.html ../../../../share/html/online/g_rmsdist.html ../../../../share/html/online/map.html ../../../../share/html/online/x2top.html ../../../../share/html/online/g_covar.html ../../../../share/html/online/g_rmsf.html ../../../../share/html/online/mdp.html ../../../../share/html/online/xpm.html ../../../../share/html/online/g_density.html ../../../../share/html/online/g_rotacf.html ../../../../share/html/online/mdp_opt.html ../../../../share/html/online/xpm2ps.html ../../../../share/html/online/g_dielectric.html ../../../../share/html/online/g_saltbr.html ../../../../share/html/online/mdrun.html ../../../../share/html/online/xrama.html ../../../../share/html/online/g_dih.html ../../../../share/html/online/g_sas.html ../../../../share/html/online/mk_angndx.html ../../../../share/html/online/xtc.html ../../../../share/html/online/g_dipoles.html ../../../../share/html/online/g_sgangle.html ../../../../share/html/online/mtx.html ../../../../share/html/online/xvg.html ../../../../share/html/online/g_densmap.html ../../../../share/html/online/g_sham.html ../../../../share/html/online/make_edi.html ../../../../share/html/online/style.css ../../../../share/html/online/water.html ../../../../share/html/online/gmxdemo.html ../../../../share/html/online/speptide.html ../../../../share/html/online/yourown.html ../../../../share/html/online/methanol.html ../../../../share/html/online/mixed.html ../../../../share/html/online/protunf.html '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html/online' make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/html/online' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/html/online' make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share/html' make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share' make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share' make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/share' Making install in man make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/man' Making install in man1 make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/man/man1' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/man/man1' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1' /usr/libexec/rpm-build/install -p -m 644 ../../../man/man1/anadock.1 ../../../man/man1/do_dssp.1 ../../../man/man1/editconf.1 ../../../man/man1/eneconv.1 ../../../man/man1/g_anaeig.1 ../../../man/man1/g_analyze.1 ../../../man/man1/g_angle.1 ../../../man/man1/g_bond.1 ../../../man/man1/g_bundle.1 ../../../man/man1/g_chi.1 ../../../man/man1/g_cluster.1 ../../../man/man1/g_clustsize.1 ../../../man/man1/g_confrms.1 ../../../man/man1/g_covar.1 ../../../man/man1/g_current.1 ../../../man/man1/g_density.1 ../../../man/man1/g_densmap.1 ../../../man/man1/g_dielectric.1 ../../../man/man1/g_dih.1 ../../../man/man1/g_dipoles.1 ../../../man/man1/g_disre.1 ../../../man/man1/g_dist.1 ../../../man/man1/g_dyndom.1 ../../../man/man1/g_enemat.1 ../../../man/man1/g_energy.1 ../../../man/man1/g_filter.1 ../../../man/man1/g_gyrate.1 ../../../man/man1/g_h2order.1 ../../../man/man1/g_hbond.1 ../../../man/man1/g_helix.1 ../../../man/man1/g_helixorient.1 ../../../man/man1/g_kinetics.1 ../../../man/man1/g_lie.1 ../../../man/man1/g_mdmat.1 ../../../man/man1/g_mindist.1 ../../../man/man1/g_morph.1 ../../../man/man1/g_msd.1 ../../../man/man1/g_nmeig.1 ../../../man/man1/g_nmens.1 ../../../man/man1/g_nmtraj.1 '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1' /usr/libexec/rpm-build/install -p -m 644 ../../../man/man1/g_order.1 ../../../man/man1/g_polystat.1 ../../../man/man1/g_potential.1 ../../../man/man1/g_principal.1 ../../../man/man1/g_rama.1 ../../../man/man1/g_rdf.1 ../../../man/man1/g_rms.1 ../../../man/man1/g_rmsdist.1 ../../../man/man1/g_rmsf.1 ../../../man/man1/g_rotacf.1 ../../../man/man1/g_saltbr.1 ../../../man/man1/g_sas.1 ../../../man/man1/g_sdf.1 ../../../man/man1/g_sgangle.1 ../../../man/man1/g_sham.1 ../../../man/man1/g_sorient.1 ../../../man/man1/g_spatial.1 ../../../man/man1/g_spol.1 ../../../man/man1/g_tcaf.1 ../../../man/man1/g_traj.1 ../../../man/man1/g_vanhove.1 ../../../man/man1/g_velacc.1 ../../../man/man1/g_wham.1 ../../../man/man1/gen_table.1 ../../../man/man1/genbox.1 ../../../man/man1/genconf.1 ../../../man/man1/genion.1 ../../../man/man1/genrestr.1 ../../../man/man1/gmxcheck.1 ../../../man/man1/gmxdump.1 ../../../man/man1/grompp.1 ../../../man/man1/highway.1 ../../../man/man1/make_edi.1 ../../../man/man1/make_ndx.1 ../../../man/man1/mdrun.1 ../../../man/man1/mk_angndx.1 ../../../man/man1/ngmx.1 ../../../man/man1/pdb2gmx.1 ../../../man/man1/protonate.1 ../../../man/man1/sigeps.1 '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1' /usr/libexec/rpm-build/install -p -m 644 ../../../man/man1/tpbconv.1 ../../../man/man1/trjcat.1 ../../../man/man1/trjconv.1 ../../../man/man1/trjorder.1 ../../../man/man1/wheel.1 ../../../man/man1/x2top.1 ../../../man/man1/xpm2ps.1 ../../../man/man1/xrama.1 '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/man/man1' make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/man/man1' make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/man' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/man' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/man' make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/man' make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single/man' make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single' make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single' make install-exec-hook make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single' GROMACS is installed under /usr. Make sure to update your PATH and MANPATH to find the programs and unix manual pages, and possibly LD_LIBRARY_PATH or /etc/ld.so.conf if you are using dynamic libraries. Please run "make tests" now to verify your installation. If you want links to the executables in /usr/local/bin, you can issue "make links" now. make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single' make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single' make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single' make: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/single' + popd ~/RPM/BUILD/gromacs-4.0.7 + pushd double ~/RPM/BUILD/gromacs-4.0.7/double ~/RPM/BUILD/gromacs-4.0.7 + make 'INSTALL=/usr/libexec/rpm-build/install -p' install DESTDIR=/usr/src/tmp/gromacs-buildroot make: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double' Making install in include make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/include' Making install in . make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/include' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/include' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/include/gromacs' /usr/libexec/rpm-build/install -p -m 644 ../../include/3dview.h ../../include/assert.h ../../include/atomprop.h ../../include/bondf.h ../../include/calcgrid.h ../../include/calch.h ../../include/calcmu.h ../../include/checkpoint.h ../../include/confio.h ../../include/constr.h ../../include/copyrite.h ../../include/coulomb.h ../../include/dihre.h ../../include/disre.h ../../include/domdec.h ../../include/domdec_network.h ../../include/do_fit.h ../../include/ebin.h ../../include/edsam.h ../../include/enxio.h ../../include/gmx_fatal.h ../../include/ffscanf.h ../../include/fftgrid.h ../../include/filenm.h ../../include/force.h ../../include/futil.h ../../include/gbutil.h ../../include/gmx_ana.h ../../include/gmx_arpack.h ../../include/gmx_blas.h ../../include/gmxcomplex.h ../../include/gmx_cyclecounter.h ../../include/gmxfio.h ../../include/gmx_fft.h ../../include/gmx_lapack.h ../../include/gmx_random.h ../../include/gmx_parallel_3dfft.h ../../include/gmx_system_xdr.h ../../include/gmx_thread.h ../../include/gmx_wallcycle.h '/usr/src/tmp/gromacs-buildroot/usr/include/gromacs' /usr/libexec/rpm-build/install -p -m 644 ../../include/gpp_atomtype.h ../../include/gpp_nextnb.h ../../include/grompp.h ../../include/gstat.h ../../include/index.h ../../include/invblock.h ../../include/macros.h ../../include/magic.h ../../include/main.h ../../include/maths.h ../../include/matio.h ../../include/mdatoms.h ../../include/mdebin.h ../../include/mdrun.h ../../include/mpelogging.h ../../include/mshift.h ../../include/mtop_util.h ../../include/mtxio.h ../../include/mvdata.h ../../include/names.h ../../include/network.h ../../include/nonbonded.h ../../include/nrama.h ../../include/nrjac.h ../../include/nrnb.h ../../include/nsgrid.h ../../include/ns.h ../../include/orires.h ../../include/partdec.h ../../include/pbc.h ../../include/pdbio.h ../../include/pdebug.h ../../include/perf_est.h ../../include/physics.h ../../include/pme.h ../../include/pppm.h ../../include/princ.h ../../include/pull.h ../../include/qmmm.h ../../include/random.h '/usr/src/tmp/gromacs-buildroot/usr/include/gromacs' /usr/libexec/rpm-build/install -p -m 644 ../../include/rbin.h ../../include/rdgroup.h ../../include/readcomp.h ../../include/readinp.h ../../include/reorder.h ../../include/rmpbc.h ../../include/shellfc.h ../../include/shift.h ../../include/smalloc.h ../../include/sortwater.h ../../include/sparsematrix.h ../../include/split.h ../../include/splitter.h ../../include/statusio.h ../../include/statutil.h ../../include/strdb.h ../../include/string2.h ../../include/struc2.h ../../include/symtab.h ../../include/sysstuff.h ../../include/tags.h ../../include/tgroup.h ../../include/topsort.h ../../include/tpxio.h ../../include/transfer.h ../../include/trnio.h ../../include/txtdump.h ../../include/typedefs.h ../../include/update.h ../../include/utils.h ../../include/vcm.h ../../include/vec.h ../../include/viewit.h ../../include/vsite.h ../../include/wgms.h ../../include/wman.h ../../include/writeps.h ../../include/xdrf.h ../../include/xtcio.h ../../include/xvgr.h '/usr/src/tmp/gromacs-buildroot/usr/include/gromacs' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/include' make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/include' Making install in types make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/include/types' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/include/types' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/include/gromacs/types' /usr/libexec/rpm-build/install -p -m 644 ../../../include/types/atoms.h ../../../include/types/forcerec.h ../../../include/types/ifunc.h ../../../include/types/mdatom.h ../../../include/types/simple.h ../../../include/types/block.h ../../../include/types/constr.h ../../../include/types/energy.h ../../../include/types/graph.h ../../../include/types/inputrec.h ../../../include/types/nblist.h ../../../include/types/ns.h ../../../include/types/nsgrid.h ../../../include/types/symtab.h ../../../include/types/commrec.h ../../../include/types/enums.h ../../../include/types/group.h ../../../include/types/ishift.h ../../../include/types/nbslist.h ../../../include/types/topology.h ../../../include/types/fcdata.h ../../../include/types/filenm.h ../../../include/types/idef.h ../../../include/types/matrix.h ../../../include/types/nrnb.h ../../../include/types/trx.h ../../../include/types/state.h ../../../include/types/pbc.h ../../../include/types/qmmmrec.h ../../../include/types/shellfc.h '/usr/src/tmp/gromacs-buildroot/usr/include/gromacs/types' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/include/types' make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/include/types' make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/include' Making install in src make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src' Making install in gmxlib make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' Making install in nonbonded make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded' Making install in nb_kernel_x86_64_sse2 make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' Making install in nb_kernel make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make install-am make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded' make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/nonbonded' Making install in gmx_blas make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_blas' Making install in gmx_lapack make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/gmx_lapack' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/lib64' /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p libgmx_d.la '/usr/src/tmp/gromacs-buildroot/usr/lib64' /usr/libexec/rpm-build/install -p .libs/libgmx_d.so.5.0.0 /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmx_d.so.5.0.0 (cd /usr/src/tmp/gromacs-buildroot/usr/lib64 && { ln -s -f libgmx_d.so.5.0.0 libgmx_d.so.5 || { rm -f libgmx_d.so.5 && ln -s libgmx_d.so.5.0.0 libgmx_d.so.5; }; }) (cd /usr/src/tmp/gromacs-buildroot/usr/lib64 && { ln -s -f libgmx_d.so.5.0.0 libgmx_d.so || { rm -f libgmx_d.so && ln -s libgmx_d.so.5.0.0 libgmx_d.so; }; }) /usr/libexec/rpm-build/install -p .libs/libgmx_d.lai /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmx_d.la libtool: install: warning: remember to run `libtool --finish /usr/lib64' make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib' Making install in mdlib make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib' /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/lib64' /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p libmd_d.la '/usr/src/tmp/gromacs-buildroot/usr/lib64' libtool: install: warning: relinking `libmd_d.la' (cd /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib; /bin/sh ../../libtool --tag=CC --mode=relink x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -version-info 5:0:0 -lgslcblas -o libmd_d.la -rpath /usr/lib64 calcmu.lo calcvir.lo constr.lo coupling.lo domdec.lo domdec_con.lo domdec_network.lo domdec_setup.lo domdec_top.lo ebin.lo edsam.lo ewald.lo fftgrid.lo force.lo ghat.lo init.lo mdatom.lo mdebin.lo minimize.lo mvxvf.lo ns.lo nsgrid.lo perf_est.lo pme.lo pme_pp.lo pppm.lo partdec.lo pull.lo pullutil.lo rf_util.lo shakef.lo sim_util.lo shellfc.lo stat.lo tables.lo tgroup.lo update.lo vcm.lo vsite.lo wall.lo wnblist.lo csettle.lo clincs.lo qmmm.lo gmx_fft.lo gmx_parallel_3dfft.lo gmx_wallcycle.lo qm_gaussian.lo gmx_fft_fftw3.lo ../gmxlib/libgmx_d.la -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -inst-prefix-dir /usr/src/tmp/gromacs-buildroot) x86_64-alt-linux-gcc -shared .libs/calcmu.o .libs/calcvir.o .libs/constr.o .libs/coupling.o .libs/domdec.o .libs/domdec_con.o .libs/domdec_network.o .libs/domdec_setup.o .libs/domdec_top.o .libs/ebin.o .libs/edsam.o .libs/ewald.o .libs/fftgrid.o .libs/force.o .libs/ghat.o .libs/init.o .libs/mdatom.o .libs/mdebin.o .libs/minimize.o .libs/mvxvf.o .libs/ns.o .libs/nsgrid.o .libs/perf_est.o .libs/pme.o .libs/pme_pp.o .libs/pppm.o .libs/partdec.o .libs/pull.o .libs/pullutil.o .libs/rf_util.o .libs/shakef.o .libs/sim_util.o .libs/shellfc.o .libs/stat.o .libs/tables.o .libs/tgroup.o .libs/update.o .libs/vcm.o .libs/vsite.o .libs/wall.o .libs/wnblist.o .libs/csettle.o .libs/clincs.o .libs/qmmm.o .libs/gmx_fft.o .libs/gmx_parallel_3dfft.o .libs/gmx_wallcycle.o .libs/qm_gaussian.o .libs/gmx_fft_fftw3.o -lgslcblas -L/usr/src/tmp/gromacs-buildroot/usr/lib64 -L/usr/lib64 -lgmx_d -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wl,-soname -Wl,libmd_d.so.5 -o .libs/libmd_d.so.5.0.0 /usr/libexec/rpm-build/install -p .libs/libmd_d.so.5.0.0T /usr/src/tmp/gromacs-buildroot/usr/lib64/libmd_d.so.5.0.0 (cd /usr/src/tmp/gromacs-buildroot/usr/lib64 && { ln -s -f libmd_d.so.5.0.0 libmd_d.so.5 || { rm -f libmd_d.so.5 && ln -s libmd_d.so.5.0.0 libmd_d.so.5; }; }) (cd /usr/src/tmp/gromacs-buildroot/usr/lib64 && { ln -s -f libmd_d.so.5.0.0 libmd_d.so || { rm -f libmd_d.so && ln -s libmd_d.so.5.0.0 libmd_d.so; }; }) /usr/libexec/rpm-build/install -p .libs/libmd_d.lai /usr/src/tmp/gromacs-buildroot/usr/lib64/libmd_d.la libtool: install: warning: remember to run `libtool --finish /usr/lib64' make install-exec-hook make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib' make[4]: Nothing to be done for 'install-exec-hook'. make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib' make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib' make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib' Making install in kernel make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/bin' /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p grompp '/usr/src/tmp/gromacs-buildroot/usr/bin/./grompp_d' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/grompp /usr/src/tmp/gromacs-buildroot/usr/bin/./grompp_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p mdrun '/usr/src/tmp/gromacs-buildroot/usr/bin/./mdrun_d' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/mdrun /usr/src/tmp/gromacs-buildroot/usr/bin/./mdrun_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p tpbconv '/usr/src/tmp/gromacs-buildroot/usr/bin/./tpbconv_d' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/tpbconv /usr/src/tmp/gromacs-buildroot/usr/bin/./tpbconv_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p pdb2gmx '/usr/src/tmp/gromacs-buildroot/usr/bin/./pdb2gmx_d' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/pdb2gmx /usr/src/tmp/gromacs-buildroot/usr/bin/./pdb2gmx_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p protonate '/usr/src/tmp/gromacs-buildroot/usr/bin/./protonate_d' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/protonate /usr/src/tmp/gromacs-buildroot/usr/bin/./protonate_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p luck '/usr/src/tmp/gromacs-buildroot/usr/bin/./luck_d' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/luck /usr/src/tmp/gromacs-buildroot/usr/bin/./luck_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p gmxdump '/usr/src/tmp/gromacs-buildroot/usr/bin/./gmxdump_d' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/gmxdump /usr/src/tmp/gromacs-buildroot/usr/bin/./gmxdump_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p gmxcheck '/usr/src/tmp/gromacs-buildroot/usr/bin/./gmxcheck_d' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/gmxcheck /usr/src/tmp/gromacs-buildroot/usr/bin/./gmxcheck_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p x2top '/usr/src/tmp/gromacs-buildroot/usr/bin/./x2top_d' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/x2top /usr/src/tmp/gromacs-buildroot/usr/bin/./x2top_d make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/kernel' Making install in tools make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/lib64' /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p libgmxana_d.la '/usr/src/tmp/gromacs-buildroot/usr/lib64' libtool: install: warning: relinking `libgmxana_d.la' (cd /usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools; /bin/sh ../../libtool --tag=CC --mode=relink x86_64-alt-linux-gcc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -version-info 5:0:0 -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o libgmxana_d.la -rpath /usr/lib64 autocorr.lo expfit.lo polynomials.lo levenmar.lo anadih.lo pp2shift.lo dlist.lo eigio.lo lsq.lo cmat.lo eigensolver.lo nsc.lo hxprops.lo fitahx.lo gmx_analyze.lo gmx_anaeig.lo gmx_angle.lo gmx_bond.lo gmx_bundle.lo gmx_chi.lo gmx_cluster.lo gmx_confrms.lo gmx_covar.lo gmx_current.lo gmx_density.lo gmx_densmap.lo gmx_dih.lo gmx_dielectric.lo gmx_kinetics.lo gmx_spatial.lo gmx_dipoles.lo gmx_disre.lo gmx_dist.lo gmx_dyndom.lo gmx_enemat.lo gmx_energy.lo gmx_lie.lo gmx_filter.lo gmx_gyrate.lo gmx_h2order.lo gmx_hbond.lo gmx_helix.lo gmx_mindist.lo gmx_msd.lo gmx_morph.lo gmx_nmeig.lo gmx_nmens.lo gmx_order.lo gmx_principal.lo gmx_polystat.lo gmx_potential.lo gmx_rama.lo gmx_rdf.lo gmx_rms.lo gmx_rmsdist.lo gmx_rmsf.lo gmx_rotacf.lo gmx_saltbr.lo gmx_sas.lo gmx_sdf.lo gmx_sgangle.lo gmx_sorient.lo gmx_spol.lo gmx_tcaf.lo gmx_traj.lo gmx_velacc.lo gmx_helixorient.lo gmx_clustsize.lo gmx_mdmat.lo gmx_wham.lo correl.lo gmx_sham.lo gmx_nmtraj.lo gmx_trjconv.lo gmx_trjcat.lo gmx_trjorder.lo gmx_xpm2ps.lo gmx_editconf.lo gmx_genbox.lo gmx_genion.lo gmx_genconf.lo gmx_genpr.lo gmx_eneconv.lo gmx_vanhove.lo gmx_wheel.lo addconf.lo calcpot.lo edittop.lo ../gmxlib/libgmx_d.la ../mdlib/libmd_d.la -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -lmpi -lopen-pal -lopen-rte -inst-prefix-dir /usr/src/tmp/gromacs-buildroot) x86_64-alt-linux-gcc -shared .libs/autocorr.o .libs/expfit.o .libs/polynomials.o .libs/levenmar.o .libs/anadih.o .libs/pp2shift.o .libs/dlist.o .libs/eigio.o .libs/lsq.o .libs/cmat.o .libs/eigensolver.o .libs/nsc.o .libs/hxprops.o .libs/fitahx.o .libs/gmx_analyze.o .libs/gmx_anaeig.o .libs/gmx_angle.o .libs/gmx_bond.o .libs/gmx_bundle.o .libs/gmx_chi.o .libs/gmx_cluster.o .libs/gmx_confrms.o .libs/gmx_covar.o .libs/gmx_current.o .libs/gmx_density.o .libs/gmx_densmap.o .libs/gmx_dih.o .libs/gmx_dielectric.o .libs/gmx_kinetics.o .libs/gmx_spatial.o .libs/gmx_dipoles.o .libs/gmx_disre.o .libs/gmx_dist.o .libs/gmx_dyndom.o .libs/gmx_enemat.o .libs/gmx_energy.o .libs/gmx_lie.o .libs/gmx_filter.o .libs/gmx_gyrate.o .libs/gmx_h2order.o .libs/gmx_hbond.o .libs/gmx_helix.o .libs/gmx_mindist.o .libs/gmx_msd.o .libs/gmx_morph.o .libs/gmx_nmeig.o .libs/gmx_nmens.o .libs/gmx_order.o .libs/gmx_principal.o .libs/gmx_polystat.o .libs/gmx_potential.o .libs/gmx_rama.o .libs/gmx_rdf.o .libs/gmx_rms.o .libs/gmx_rmsdist.o .libs/gmx_rmsf.o .libs/gmx_rotacf.o .libs/gmx_saltbr.o .libs/gmx_sas.o .libs/gmx_sdf.o .libs/gmx_sgangle.o .libs/gmx_sorient.o .libs/gmx_spol.o .libs/gmx_tcaf.o .libs/gmx_traj.o .libs/gmx_velacc.o .libs/gmx_helixorient.o .libs/gmx_clustsize.o .libs/gmx_mdmat.o .libs/gmx_wham.o .libs/correl.o .libs/gmx_sham.o .libs/gmx_nmtraj.o .libs/gmx_trjconv.o .libs/gmx_trjcat.o .libs/gmx_trjorder.o .libs/gmx_xpm2ps.o .libs/gmx_editconf.o .libs/gmx_genbox.o .libs/gmx_genion.o .libs/gmx_genconf.o .libs/gmx_genpr.o .libs/gmx_eneconv.o .libs/gmx_vanhove.o .libs/gmx_wheel.o .libs/addconf.o .libs/calcpot.o .libs/edittop.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs -L/usr/lib64/openmpi/lib -L/usr/src/tmp/gromacs-buildroot/usr/lib64 -L/usr/lib64 -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_d -lmd_d -L/usr/src/tmp/gromacs-buildroot/usr/lib64/openmpi/lib -lmpi -lopen-pal -lopen-rte -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wl,-Rpath:/usr/lib64/openmpi/lib -Wl,-soname -Wl,libgmxana_d.so.5 -o .libs/libgmxana_d.so.5.0.0 /usr/libexec/rpm-build/install -p .libs/libgmxana_d.so.5.0.0T /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana_d.so.5.0.0 (cd /usr/src/tmp/gromacs-buildroot/usr/lib64 && { ln -s -f libgmxana_d.so.5.0.0 libgmxana_d.so.5 || { rm -f libgmxana_d.so.5 && ln -s libgmxana_d.so.5.0.0 libgmxana_d.so.5; }; }) (cd /usr/src/tmp/gromacs-buildroot/usr/lib64 && { ln -s -f libgmxana_d.so.5.0.0 libgmxana_d.so || { rm -f libgmxana_d.so && ln -s libgmxana_d.so.5.0.0 libgmxana_d.so; }; }) /usr/libexec/rpm-build/install -p .libs/libgmxana_d.lai /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana_d.la libtool: install: warning: remember to run `libtool --finish /usr/lib64' /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/bin' /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p do_dssp '/usr/src/tmp/gromacs-buildroot/usr/bin/./do_dssp_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/do_dssp /usr/src/tmp/gromacs-buildroot/usr/bin/./do_dssp_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p editconf '/usr/src/tmp/gromacs-buildroot/usr/bin/./editconf_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/editconf /usr/src/tmp/gromacs-buildroot/usr/bin/./editconf_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p eneconv '/usr/src/tmp/gromacs-buildroot/usr/bin/./eneconv_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/eneconv /usr/src/tmp/gromacs-buildroot/usr/bin/./eneconv_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p genbox '/usr/src/tmp/gromacs-buildroot/usr/bin/./genbox_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/genbox /usr/src/tmp/gromacs-buildroot/usr/bin/./genbox_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p genconf '/usr/src/tmp/gromacs-buildroot/usr/bin/./genconf_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/genconf /usr/src/tmp/gromacs-buildroot/usr/bin/./genconf_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p genrestr '/usr/src/tmp/gromacs-buildroot/usr/bin/./genrestr_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/genrestr /usr/src/tmp/gromacs-buildroot/usr/bin/./genrestr_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_nmtraj '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_nmtraj_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_nmtraj /usr/src/tmp/gromacs-buildroot/usr/bin/./g_nmtraj_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p make_ndx '/usr/src/tmp/gromacs-buildroot/usr/bin/./make_ndx_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/make_ndx /usr/src/tmp/gromacs-buildroot/usr/bin/./make_ndx_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p mk_angndx '/usr/src/tmp/gromacs-buildroot/usr/bin/./mk_angndx_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/mk_angndx /usr/src/tmp/gromacs-buildroot/usr/bin/./mk_angndx_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p trjcat '/usr/src/tmp/gromacs-buildroot/usr/bin/./trjcat_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/trjcat /usr/src/tmp/gromacs-buildroot/usr/bin/./trjcat_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p trjconv '/usr/src/tmp/gromacs-buildroot/usr/bin/./trjconv_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/trjconv /usr/src/tmp/gromacs-buildroot/usr/bin/./trjconv_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p trjorder '/usr/src/tmp/gromacs-buildroot/usr/bin/./trjorder_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/trjorder /usr/src/tmp/gromacs-buildroot/usr/bin/./trjorder_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p wheel '/usr/src/tmp/gromacs-buildroot/usr/bin/./wheel_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/wheel /usr/src/tmp/gromacs-buildroot/usr/bin/./wheel_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p xpm2ps '/usr/src/tmp/gromacs-buildroot/usr/bin/./xpm2ps_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/xpm2ps /usr/src/tmp/gromacs-buildroot/usr/bin/./xpm2ps_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p genion '/usr/src/tmp/gromacs-buildroot/usr/bin/./genion_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/genion /usr/src/tmp/gromacs-buildroot/usr/bin/./genion_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p anadock '/usr/src/tmp/gromacs-buildroot/usr/bin/./anadock_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/anadock /usr/src/tmp/gromacs-buildroot/usr/bin/./anadock_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p make_edi '/usr/src/tmp/gromacs-buildroot/usr/bin/./make_edi_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/make_edi /usr/src/tmp/gromacs-buildroot/usr/bin/./make_edi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_analyze '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_analyze_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_analyze /usr/src/tmp/gromacs-buildroot/usr/bin/./g_analyze_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_anaeig '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_anaeig_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_anaeig /usr/src/tmp/gromacs-buildroot/usr/bin/./g_anaeig_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_angle '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_angle_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_angle /usr/src/tmp/gromacs-buildroot/usr/bin/./g_angle_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_bond '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_bond_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_bond /usr/src/tmp/gromacs-buildroot/usr/bin/./g_bond_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_bundle '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_bundle_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_bundle /usr/src/tmp/gromacs-buildroot/usr/bin/./g_bundle_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_chi '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_chi_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_chi /usr/src/tmp/gromacs-buildroot/usr/bin/./g_chi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_cluster '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_cluster_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_cluster /usr/src/tmp/gromacs-buildroot/usr/bin/./g_cluster_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_confrms '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_confrms_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_confrms /usr/src/tmp/gromacs-buildroot/usr/bin/./g_confrms_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_covar '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_covar_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_covar /usr/src/tmp/gromacs-buildroot/usr/bin/./g_covar_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_current '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_current_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_current /usr/src/tmp/gromacs-buildroot/usr/bin/./g_current_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_density '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_density_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_density /usr/src/tmp/gromacs-buildroot/usr/bin/./g_density_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_densmap '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_densmap_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_densmap /usr/src/tmp/gromacs-buildroot/usr/bin/./g_densmap_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_dih '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_dih_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_dih /usr/src/tmp/gromacs-buildroot/usr/bin/./g_dih_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_dielectric '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_dielectric_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_dielectric /usr/src/tmp/gromacs-buildroot/usr/bin/./g_dielectric_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_helixorient '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_helixorient_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_helixorient /usr/src/tmp/gromacs-buildroot/usr/bin/./g_helixorient_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_principal '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_principal_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_principal /usr/src/tmp/gromacs-buildroot/usr/bin/./g_principal_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_dipoles '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_dipoles_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_dipoles /usr/src/tmp/gromacs-buildroot/usr/bin/./g_dipoles_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_disre '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_disre_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_disre /usr/src/tmp/gromacs-buildroot/usr/bin/./g_disre_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_dist '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_dist_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_dist /usr/src/tmp/gromacs-buildroot/usr/bin/./g_dist_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_dyndom '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_dyndom_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_dyndom /usr/src/tmp/gromacs-buildroot/usr/bin/./g_dyndom_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_enemat '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_enemat_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_enemat /usr/src/tmp/gromacs-buildroot/usr/bin/./g_enemat_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_energy '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_energy_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_energy /usr/src/tmp/gromacs-buildroot/usr/bin/./g_energy_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_lie '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_lie_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_lie /usr/src/tmp/gromacs-buildroot/usr/bin/./g_lie_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_filter '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_filter_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_filter /usr/src/tmp/gromacs-buildroot/usr/bin/./g_filter_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_gyrate '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_gyrate_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_gyrate /usr/src/tmp/gromacs-buildroot/usr/bin/./g_gyrate_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_h2order '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_h2order_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_h2order /usr/src/tmp/gromacs-buildroot/usr/bin/./g_h2order_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_hbond '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_hbond_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_hbond /usr/src/tmp/gromacs-buildroot/usr/bin/./g_hbond_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_helix '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_helix_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_helix /usr/src/tmp/gromacs-buildroot/usr/bin/./g_helix_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_mindist '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_mindist_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_mindist /usr/src/tmp/gromacs-buildroot/usr/bin/./g_mindist_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_msd '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_msd_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_msd /usr/src/tmp/gromacs-buildroot/usr/bin/./g_msd_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_morph '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_morph_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_morph /usr/src/tmp/gromacs-buildroot/usr/bin/./g_morph_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_nmeig '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_nmeig_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_nmeig /usr/src/tmp/gromacs-buildroot/usr/bin/./g_nmeig_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_nmens '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_nmens_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_nmens /usr/src/tmp/gromacs-buildroot/usr/bin/./g_nmens_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_order '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_order_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_order /usr/src/tmp/gromacs-buildroot/usr/bin/./g_order_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_polystat '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_polystat_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_polystat /usr/src/tmp/gromacs-buildroot/usr/bin/./g_polystat_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_potential '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_potential_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_potential /usr/src/tmp/gromacs-buildroot/usr/bin/./g_potential_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_rama '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_rama_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_rama /usr/src/tmp/gromacs-buildroot/usr/bin/./g_rama_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_rdf '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_rdf_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_rdf /usr/src/tmp/gromacs-buildroot/usr/bin/./g_rdf_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_rms '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_rms_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_rms /usr/src/tmp/gromacs-buildroot/usr/bin/./g_rms_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_rmsdist '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_rmsdist_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_rmsdist /usr/src/tmp/gromacs-buildroot/usr/bin/./g_rmsdist_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_rmsf '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_rmsf_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_rmsf /usr/src/tmp/gromacs-buildroot/usr/bin/./g_rmsf_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_rotacf '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_rotacf_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_rotacf /usr/src/tmp/gromacs-buildroot/usr/bin/./g_rotacf_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_saltbr '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_saltbr_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_saltbr /usr/src/tmp/gromacs-buildroot/usr/bin/./g_saltbr_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_sas '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_sas_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_sas /usr/src/tmp/gromacs-buildroot/usr/bin/./g_sas_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_sgangle '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_sgangle_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_sgangle /usr/src/tmp/gromacs-buildroot/usr/bin/./g_sgangle_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_sham '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_sham_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_sham /usr/src/tmp/gromacs-buildroot/usr/bin/./g_sham_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_sorient '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_sorient_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_sorient /usr/src/tmp/gromacs-buildroot/usr/bin/./g_sorient_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_spol '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_spol_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_spol /usr/src/tmp/gromacs-buildroot/usr/bin/./g_spol_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_sdf '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_sdf_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_sdf /usr/src/tmp/gromacs-buildroot/usr/bin/./g_sdf_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_spatial '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_spatial_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_spatial /usr/src/tmp/gromacs-buildroot/usr/bin/./g_spatial_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_tcaf '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_tcaf_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_tcaf /usr/src/tmp/gromacs-buildroot/usr/bin/./g_tcaf_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_traj '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_traj_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_traj /usr/src/tmp/gromacs-buildroot/usr/bin/./g_traj_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_vanhove '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_vanhove_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_vanhove /usr/src/tmp/gromacs-buildroot/usr/bin/./g_vanhove_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_velacc '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_velacc_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_velacc /usr/src/tmp/gromacs-buildroot/usr/bin/./g_velacc_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_clustsize '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_clustsize_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_clustsize /usr/src/tmp/gromacs-buildroot/usr/bin/./g_clustsize_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_mdmat '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_mdmat_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_mdmat /usr/src/tmp/gromacs-buildroot/usr/bin/./g_mdmat_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_wham '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_wham_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_wham /usr/src/tmp/gromacs-buildroot/usr/bin/./g_wham_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_kinetics '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_kinetics_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_kinetics /usr/src/tmp/gromacs-buildroot/usr/bin/./g_kinetics_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p sigeps '/usr/src/tmp/gromacs-buildroot/usr/bin/./sigeps_d' libtool: install: warning: `libgmxana_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/gmxlib/.libs/libgmx_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/mdlib/.libs/libmd_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/sigeps /usr/src/tmp/gromacs-buildroot/usr/bin/./sigeps_d make install-exec-hook make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' libname="libgmxana_d"; \ nompi="`echo $libname | sed -e 's,_mpi,,'`"; \ libdir="/usr/lib64"; \ if echo $libname | grep mpi >/dev/null ; then \ (cd $libdir && test -e $libname.a -a ! -e $nompi.a && ln -s $libname.a $nompi.a ; exit 0); \ (cd $libdir && test -e $libname.so -a ! -e $nompi.so && ln -s $libname.so $nompi.so ; exit 0); \ fi; make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/tools' Making install in ngmx make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx' /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/bin' /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p ngmx '/usr/src/tmp/gromacs-buildroot/usr/bin/./ngmx_d' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/ngmx /usr/src/tmp/gromacs-buildroot/usr/bin/./ngmx_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p xrama '/usr/src/tmp/gromacs-buildroot/usr/bin/./xrama_d' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/xrama /usr/src/tmp/gromacs-buildroot/usr/bin/./xrama_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p highway '/usr/src/tmp/gromacs-buildroot/usr/bin/./highway_d' libtool: install: warning: `../mdlib/libmd_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/highway /usr/src/tmp/gromacs-buildroot/usr/bin/./highway_d make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx' make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/ngmx' Making install in contrib make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/contrib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/contrib' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/contrib' make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src/contrib' make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src' make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src' make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/src' Making install in admin make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/admin' make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/admin' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/admin' make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/admin' Making install in scripts make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/scripts' make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/scripts' /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/bin' /usr/libexec/rpm-build/install -p GMXRC GMXRC.csh GMXRC.bash GMXRC.zsh '/usr/src/tmp/gromacs-buildroot/usr/bin' /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/bin' /usr/libexec/rpm-build/install -p ../../scripts/completion.csh ../../scripts/completion.bash ../../scripts/completion.zsh ../../scripts/demux.pl ../../scripts/xplor2gmx.pl '/usr/src/tmp/gromacs-buildroot/usr/bin' make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/scripts' make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/scripts' Making install in share make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share' Making install in top make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/top' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/top' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/top' /usr/libexec/rpm-build/install -p -m 644 ../../../share/top/ffgmx.itp ../../../share/top/ffgmxnb.itp ../../../share/top/ffgmxbon.itp ../../../share/top/ffgmx.atp ../../../share/top/ffgmx.hdb ../../../share/top/ffgmx.rtp ../../../share/top/ffgmx-c.tdb ../../../share/top/ffgmx-n.tdb ../../../share/top/ffgmx2.itp ../../../share/top/ffgmx2nb.itp ../../../share/top/ffgmx2bon.itp ../../../share/top/ffgmx2.atp ../../../share/top/ffgmx2.hdb ../../../share/top/ffgmx2.rtp ../../../share/top/ffgmx2-c.tdb ../../../share/top/ffgmx2-n.tdb ../../../share/top/ffG43a1.itp ../../../share/top/ffG43a1nb.itp ../../../share/top/ffG43a1bon.itp ../../../share/top/ffG43a1.atp ../../../share/top/ffG43a1.hdb ../../../share/top/ffG43a1.rtp ../../../share/top/ffG43a1-c.tdb ../../../share/top/ffG43a1-n.tdb ../../../share/top/ffG43a2.itp ../../../share/top/ffG43a2nb.itp ../../../share/top/ffG43a2bon.itp ../../../share/top/ffG43a2.atp ../../../share/top/ffG43a2.hdb ../../../share/top/ffG43a2.rtp ../../../share/top/ffG43a2-c.tdb ../../../share/top/ffG43a2-n.tdb ../../../share/top/ffgmx.ddb ../../../share/top/ffgmx2.ddb ../../../share/top/ffG43a1.ddb ../../../share/top/ffG43a2.ddb ../../../share/top/ffG45a3-c.tdb ../../../share/top/ffG45a3.atp ../../../share/top/ffG45a3.hdb ../../../share/top/ffG45a3.rtp '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/top' /usr/libexec/rpm-build/install -p -m 644 ../../../share/top/ffG45a3nb.itp ../../../share/top/ffG45a3-n.tdb ../../../share/top/ffG45a3.ddb ../../../share/top/ffG45a3.itp ../../../share/top/ffG45a3bon.itp ../../../share/top/ffG53a5-c.tdb ../../../share/top/ffG53a5.atp ../../../share/top/ffG53a5.hdb ../../../share/top/ffG53a5.rtp ../../../share/top/ffG53a5nb.itp ../../../share/top/ffG53a5-n.tdb ../../../share/top/ffG53a5.ddb ../../../share/top/ffG53a5.itp ../../../share/top/ffG53a5bon.itp ../../../share/top/ffG53a5.n2t ../../../share/top/ffG53a6-c.tdb ../../../share/top/ffG53a6.atp ../../../share/top/ffG53a6.hdb ../../../share/top/ffG53a6.rtp ../../../share/top/ffG53a6nb.itp ../../../share/top/ffG53a6-n.tdb ../../../share/top/ffG53a6.ddb ../../../share/top/ffG53a6.itp ../../../share/top/ffG53a6bon.itp ../../../share/top/ffoplsaa.atp ../../../share/top/ffoplsaa.itp ../../../share/top/ffoplsaabon.itp ../../../share/top/ffoplsaanb.itp ../../../share/top/ffoplsaa.hdb ../../../share/top/ffoplsaa-n.tdb ../../../share/top/ffoplsaa-c.tdb ../../../share/top/ffoplsaa.rtp ../../../share/top/ffoplsaa.ddb ../../../share/top/ffoplsaa.n2t ../../../share/top/ffencads-c.tdb ../../../share/top/ffencads.itp ../../../share/top/ffencadv-c.tdb ../../../share/top/ffencadv.itp ../../../share/top/ffencads-n.tdb ../../../share/top/ffencads.rtp '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/top' /usr/libexec/rpm-build/install -p -m 644 ../../../share/top/ffencadv-n.tdb ../../../share/top/ffencadv.rtp ../../../share/top/ffencads.atp ../../../share/top/ffencadsbon.itp ../../../share/top/ffencadv.atp ../../../share/top/ffencadvbon.itp ../../../share/top/ffencads.hdb ../../../share/top/ffencadsnb.itp ../../../share/top/ffencadv.hdb ../../../share/top/ffencadvnb.itp ../../../share/top/1mlg.itp ../../../share/top/2mlg.itp ../../../share/top/benzamide.itp ../../../share/top/bondadd.itp ../../../share/top/buck.itp ../../../share/top/decane.itp ../../../share/top/dlg.itp ../../../share/top/dmso.itp ../../../share/top/fa.itp ../../../share/top/ff_dum.itp ../../../share/top/flexspc.itp ../../../share/top/flexspce.itp ../../../share/top/flexwat-ferguson.itp ../../../share/top/h2p4o13.itp ../../../share/top/h2p8o25.itp ../../../share/top/h2po4.itp ../../../share/top/ions.itp ../../../share/top/methanol.itp ../../../share/top/spc.itp ../../../share/top/spce.itp ../../../share/top/tfe.itp ../../../share/top/tip3p.itp ../../../share/top/tip4p.itp ../../../share/top/urea.itp ../../../share/top/dgsolv.dat ../../../share/top/electroneg.dat ../../../share/top/dec50.gro ../../../share/top/dmso.gro ../../../share/top/spc216.gro ../../../share/top/tip4p.gro '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/top' /usr/libexec/rpm-build/install -p -m 644 ../../../share/top/urea+h2o.gro ../../../share/top/f3c.itp ../../../share/top/aminoacids.dat ../../../share/top/atommass.dat ../../../share/top/bromacs.dat ../../../share/top/ca-shift.dat ../../../share/top/cb-shift.dat ../../../share/top/co-shift.dat ../../../share/top/edissoc.dat ../../../share/top/FF.dat ../../../share/top/gurgle.dat ../../../share/top/ha-shift.dat ../../../share/top/links.dat ../../../share/top/phbres.dat ../../../share/top/random.dat ../../../share/top/refi_aa.dat ../../../share/top/specbond.dat ../../../share/top/surface.dat ../../../share/top/vdwradii.dat ../../../share/top/xlateat.dat ../../../share/top/highway.dat ../../../share/top/export.dlg ../../../share/top/bonds.dlg ../../../share/top/ss.map ../../../share/top/ps.m2p ../../../share/top/table6-10.xvg ../../../share/top/table6-11.xvg ../../../share/top/table6-12.xvg ../../../share/top/table6-8.xvg ../../../share/top/table6-9.xvg ../../../share/top/atom_nom.tbl ../../../share/top/gromacs.dtd ../../../share/top/tip5p.gro ../../../share/top/tip5p.itp ../../../share/top/sw.itp ../../../share/top/elements.dat '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/top' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/top' make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/top' Making install in tutor make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor' Making install in nmr1 make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/nmr1' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/nmr1' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/nmr1' /usr/libexec/rpm-build/install -p -m 644 ../../../../share/tutor/nmr1/conf.gro ../../../../share/tutor/nmr1/grompp.mdp ../../../../share/tutor/nmr1/pep.pdb ../../../../share/tutor/nmr1/topol.top '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/nmr1' make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/nmr1' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/nmr1' Making install in nmr2 make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/nmr2' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/nmr2' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/nmr2' /usr/libexec/rpm-build/install -p -m 644 ../../../../share/tutor/nmr2/conf.gro ../../../../share/tutor/nmr2/genconf.gcp ../../../../share/tutor/nmr2/grompp.mdp ../../../../share/tutor/nmr2/pep.pdb ../../../../share/tutor/nmr2/topol.top '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/nmr2' make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/nmr2' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/nmr2' Making install in speptide make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/speptide' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/speptide' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/speptide' /usr/libexec/rpm-build/install -p -m 644 ../../../../share/tutor/speptide/em.mdp ../../../../share/tutor/speptide/full.mdp ../../../../share/tutor/speptide/pr.mdp ../../../../share/tutor/speptide/speptide.pdb '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/speptide' make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/speptide' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/speptide' Making install in water make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/water' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/water' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/water' /usr/libexec/rpm-build/install -p -m 644 ../../../../share/tutor/water/index.ndx ../../../../share/tutor/water/conf.gro ../../../../share/tutor/water/spc216.pdb ../../../../share/tutor/water/grompp.mdp ../../../../share/tutor/water/topol.top '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/water' make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/water' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/water' Making install in gmxdemo make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/gmxdemo' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/gmxdemo' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/gmxdemo' /usr/libexec/rpm-build/install -p -m 644 ../../../../share/tutor/gmxdemo/cpeptide.pdb '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/gmxdemo' /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/gmxdemo' /usr/libexec/rpm-build/install -p ../../../../share/tutor/gmxdemo/demo '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/gmxdemo/./demo_d' make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/gmxdemo' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/gmxdemo' Making install in methanol make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/methanol' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/methanol' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/methanol' /usr/libexec/rpm-build/install -p -m 644 ../../../../share/tutor/methanol/index.ndx ../../../../share/tutor/methanol/conf.gro ../../../../share/tutor/methanol/methanol.pdb ../../../../share/tutor/methanol/grompp.mdp ../../../../share/tutor/methanol/topol.top ../../../../share/tutor/methanol/methanol.itp '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/methanol' make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/methanol' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/methanol' Making install in mixed make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/mixed' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/mixed' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/mixed' /usr/libexec/rpm-build/install -p -m 644 ../../../../share/tutor/mixed/index.ndx ../../../../share/tutor/mixed/conf.gro ../../../../share/tutor/mixed/mixed.pdb ../../../../share/tutor/mixed/grompp.mdp ../../../../share/tutor/mixed/topol.top '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/mixed' make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/mixed' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor/mixed' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor' make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/tutor' Making install in template make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/template' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/template' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/template' /usr/libexec/rpm-build/install -p -m 644 ../../../share/template/template.c ../../../share/template/README Makefile.x86_64-alt-linux-gnu_double '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/template' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/template' make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/template' Making install in html make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/html' Making install in . make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/html' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/html' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html' /usr/libexec/rpm-build/install -p -m 644 ../../../share/html/online.html ../../../share/html/gmxfaq.html '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html' make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/html' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/html' Making install in images make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/html/images' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/html/images' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html/images' /usr/libexec/rpm-build/install -p -m 644 ../../../../share/html/images/features.gif ../../../../share/html/images/flow_leftrightup.gif ../../../../share/html/images/flow_vrule.gif ../../../../share/html/images/flow_down.gif ../../../../share/html/images/flow_leftup.gif ../../../../share/html/images/links.gif ../../../../share/html/images/articles.gif ../../../../share/html/images/flow_downleft.gif ../../../../share/html/images/flow_right+left.gif ../../../../share/html/images/mail.gif ../../../../share/html/images/bench.gif ../../../../share/html/images/flow_hline.gif ../../../../share/html/images/flow_right.gif ../../../../share/html/images/manual.gif ../../../../share/html/images/charts_down.gif ../../../../share/html/images/flow_left.gif ../../../../share/html/images/flow_rightleftdown.gif ../../../../share/html/images/gmxlogo_small.jpg ../../../../share/html/images/charts_up.gif ../../../../share/html/images/flow_leftright.gif ../../../../share/html/images/flow_uprightleft.gif ../../../../share/html/images/software.gif ../../../../share/html/images/faq.gif ../../../../share/html/images/flow_leftrightdown.gif ../../../../share/html/images/flow_vline.gif ../../../../share/html/images/topologies.gif ../../../../share/html/images/plotje.gif ../../../../share/html/images/xvgr.gif ../../../../share/html/images/1ctf-0.jpg ../../../../share/html/images/1ctf-0.2.jpg ../../../../share/html/images/1ctf-0.5.jpg ../../../../share/html/images/1ctf-1.jpg ../../../../share/html/images/1ctf-4.jpg ../../../../share/html/images/1ctf-10.jpg '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html/images' make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/html/images' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/html/images' Making install in online make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/html/online' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/html/online' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html/online' /usr/libexec/rpm-build/install -p -m 644 ../../../../share/html/online/cpt.html ../../../../share/html/online/dat.html ../../../../share/html/online/g_disre.html ../../../../share/html/online/g_sorient.html ../../../../share/html/online/ndx.html ../../../../share/html/online/dlg.html ../../../../share/html/online/g_dist.html ../../../../share/html/online/g_tcaf.html ../../../../share/html/online/ngmx.html ../../../../share/html/online/do_dssp.html ../../../../share/html/online/g_dyndom.html ../../../../share/html/online/g_traj.html ../../../../share/html/online/edi.html ../../../../share/html/online/g_enemat.html ../../../../share/html/online/g_velacc.html ../../../../share/html/online/options.html ../../../../share/html/online/editconf.html ../../../../share/html/online/g_energy.html ../../../../share/html/online/genbox.html ../../../../share/html/online/out.html ../../../../share/html/online/edo.html ../../../../share/html/online/g_gyrate.html ../../../../share/html/online/genconf.html ../../../../share/html/online/pdb.html ../../../../share/html/online/edr.html ../../../../share/html/online/g_h2order.html ../../../../share/html/online/genion.html ../../../../share/html/online/pdb2gmx.html ../../../../share/html/online/ene.html ../../../../share/html/online/g_hbond.html ../../../../share/html/online/genpr.html ../../../../share/html/online/protonate.html ../../../../share/html/online/eneconv.html ../../../../share/html/online/g_helix.html ../../../../share/html/online/getting_started.html ../../../../share/html/online/rtp.html ../../../../share/html/online/eps.html ../../../../share/html/online/g_lie.html ../../../../share/html/online/gmxcheck.html ../../../../share/html/online/tex.html '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html/online' /usr/libexec/rpm-build/install -p -m 644 ../../../../share/html/online/files.html ../../../../share/html/online/g_mdmat.html ../../../../share/html/online/gmxdump.html ../../../../share/html/online/top.html ../../../../share/html/online/flow.html ../../../../share/html/online/g_mindist.html ../../../../share/html/online/gro.html ../../../../share/html/online/tpa.html ../../../../share/html/online/g87.html ../../../../share/html/online/g_morph.html ../../../../share/html/online/grompp.html ../../../../share/html/online/tpb.html ../../../../share/html/online/g96.html ../../../../share/html/online/g_msd.html ../../../../share/html/online/hat.html ../../../../share/html/online/tpbconv.html ../../../../share/html/online/g_anaeig.html ../../../../share/html/online/g_nmeig.html ../../../../share/html/online/highway.html ../../../../share/html/online/tpr.html ../../../../share/html/online/g_analyze.html ../../../../share/html/online/g_nmens.html ../../../../share/html/online/include_bot.html ../../../../share/html/online/trj.html ../../../../share/html/online/g_angle.html ../../../../share/html/online/g_order.html ../../../../share/html/online/include_top.html ../../../../share/html/online/trjcat.html ../../../../share/html/online/g_bond.html ../../../../share/html/online/g_potential.html ../../../../share/html/online/itp.html ../../../../share/html/online/trjconv.html ../../../../share/html/online/g_bundle.html ../../../../share/html/online/g_rama.html ../../../../share/html/online/log.html ../../../../share/html/online/trjorder.html ../../../../share/html/online/g_chi.html ../../../../share/html/online/g_rdf.html ../../../../share/html/online/m2p.html ../../../../share/html/online/trr.html '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html/online' /usr/libexec/rpm-build/install -p -m 644 ../../../../share/html/online/g_cluster.html ../../../../share/html/online/g_rms.html ../../../../share/html/online/make_ndx.html ../../../../share/html/online/wheel.html ../../../../share/html/online/g_confrms.html ../../../../share/html/online/g_rmsdist.html ../../../../share/html/online/map.html ../../../../share/html/online/x2top.html ../../../../share/html/online/g_covar.html ../../../../share/html/online/g_rmsf.html ../../../../share/html/online/mdp.html ../../../../share/html/online/xpm.html ../../../../share/html/online/g_density.html ../../../../share/html/online/g_rotacf.html ../../../../share/html/online/mdp_opt.html ../../../../share/html/online/xpm2ps.html ../../../../share/html/online/g_dielectric.html ../../../../share/html/online/g_saltbr.html ../../../../share/html/online/mdrun.html ../../../../share/html/online/xrama.html ../../../../share/html/online/g_dih.html ../../../../share/html/online/g_sas.html ../../../../share/html/online/mk_angndx.html ../../../../share/html/online/xtc.html ../../../../share/html/online/g_dipoles.html ../../../../share/html/online/g_sgangle.html ../../../../share/html/online/mtx.html ../../../../share/html/online/xvg.html ../../../../share/html/online/g_densmap.html ../../../../share/html/online/g_sham.html ../../../../share/html/online/make_edi.html ../../../../share/html/online/style.css ../../../../share/html/online/water.html ../../../../share/html/online/gmxdemo.html ../../../../share/html/online/speptide.html ../../../../share/html/online/yourown.html ../../../../share/html/online/methanol.html ../../../../share/html/online/mixed.html ../../../../share/html/online/protunf.html '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html/online' make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/html/online' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/html/online' make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share/html' make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share' make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share' make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/share' Making install in man make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/man' Making install in man1 make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/man/man1' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/man/man1' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/anadock.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/anadock_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/do_dssp.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/do_dssp_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/editconf.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/editconf_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/eneconv.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/eneconv_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_anaeig.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_anaeig_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_analyze.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_analyze_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_angle.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_angle_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_bond.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_bond_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_bundle.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_bundle_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_chi.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_chi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_cluster.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_cluster_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_clustsize.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_clustsize_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_confrms.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_confrms_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_covar.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_covar_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_current.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_current_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_density.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_density_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_densmap.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_densmap_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_dielectric.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_dielectric_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_dih.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_dih_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_dipoles.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_dipoles_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_disre.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_disre_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_dist.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_dist_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_dyndom.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_dyndom_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_enemat.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_enemat_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_energy.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_energy_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_filter.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_filter_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_gyrate.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_gyrate_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_h2order.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_h2order_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_hbond.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_hbond_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_helix.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_helix_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_helixorient.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_helixorient_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_kinetics.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_kinetics_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_lie.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_lie_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_mdmat.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_mdmat_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_mindist.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_mindist_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_morph.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_morph_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_msd.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_msd_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_nmeig.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_nmeig_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_nmens.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_nmens_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_nmtraj.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_nmtraj_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_order.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_order_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_polystat.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_polystat_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_potential.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_potential_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_principal.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_principal_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_rama.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_rama_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_rdf.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_rdf_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_rms.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_rms_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_rmsdist.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_rmsdist_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_rmsf.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_rmsf_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_rotacf.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_rotacf_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_saltbr.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_saltbr_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_sas.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_sas_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_sdf.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_sdf_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_sgangle.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_sgangle_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_sham.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_sham_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_sorient.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_sorient_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_spatial.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_spatial_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_spol.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_spol_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_tcaf.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_tcaf_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_traj.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_traj_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_vanhove.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_vanhove_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_velacc.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_velacc_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_wham.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_wham_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/gen_table.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/gen_table_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/genbox.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/genbox_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/genconf.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/genconf_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/genion.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/genion_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/genrestr.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/genrestr_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/gmxcheck.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/gmxcheck_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/gmxdump.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/gmxdump_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/grompp.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/grompp_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/highway.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/highway_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/make_edi.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/make_edi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/make_ndx.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/make_ndx_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/mdrun.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/mdrun_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/mk_angndx.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/mk_angndx_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/ngmx.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/ngmx_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/pdb2gmx.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/pdb2gmx_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/protonate.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/protonate_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/sigeps.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/sigeps_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/tpbconv.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/tpbconv_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/trjcat.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/trjcat_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/trjconv.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/trjconv_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/trjorder.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/trjorder_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/wheel.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/wheel_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/x2top.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/x2top_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/xpm2ps.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/xpm2ps_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/xrama.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/xrama_d.1' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/man/man1' make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/man/man1' make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/man' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/man' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/man' make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/man' make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double/man' make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double' make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double' make install-exec-hook make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double' GROMACS is installed under /usr. Make sure to update your PATH and MANPATH to find the programs and unix manual pages, and possibly LD_LIBRARY_PATH or /etc/ld.so.conf if you are using dynamic libraries. Please run "make tests" now to verify your installation. If you want links to the executables in /usr/local/bin, you can issue "make links" now. make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double' make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double' make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double' make: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/double' + popd ~/RPM/BUILD/gromacs-4.0.7 + pushd mpi-single ~/RPM/BUILD/gromacs-4.0.7/mpi-single ~/RPM/BUILD/gromacs-4.0.7 + make 'INSTALL=/usr/libexec/rpm-build/install -p' install DESTDIR=/usr/src/tmp/gromacs-buildroot make: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single' Making install in include make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/include' Making install in . make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/include' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/include' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/include/gromacs' /usr/libexec/rpm-build/install -p -m 644 ../../include/3dview.h ../../include/assert.h ../../include/atomprop.h ../../include/bondf.h ../../include/calcgrid.h ../../include/calch.h ../../include/calcmu.h ../../include/checkpoint.h ../../include/confio.h ../../include/constr.h ../../include/copyrite.h ../../include/coulomb.h ../../include/dihre.h ../../include/disre.h ../../include/domdec.h ../../include/domdec_network.h ../../include/do_fit.h ../../include/ebin.h ../../include/edsam.h ../../include/enxio.h ../../include/gmx_fatal.h ../../include/ffscanf.h ../../include/fftgrid.h ../../include/filenm.h ../../include/force.h ../../include/futil.h ../../include/gbutil.h ../../include/gmx_ana.h ../../include/gmx_arpack.h ../../include/gmx_blas.h ../../include/gmxcomplex.h ../../include/gmx_cyclecounter.h ../../include/gmxfio.h ../../include/gmx_fft.h ../../include/gmx_lapack.h ../../include/gmx_random.h ../../include/gmx_parallel_3dfft.h ../../include/gmx_system_xdr.h ../../include/gmx_thread.h ../../include/gmx_wallcycle.h '/usr/src/tmp/gromacs-buildroot/usr/include/gromacs' /usr/libexec/rpm-build/install -p -m 644 ../../include/gpp_atomtype.h ../../include/gpp_nextnb.h ../../include/grompp.h ../../include/gstat.h ../../include/index.h ../../include/invblock.h ../../include/macros.h ../../include/magic.h ../../include/main.h ../../include/maths.h ../../include/matio.h ../../include/mdatoms.h ../../include/mdebin.h ../../include/mdrun.h ../../include/mpelogging.h ../../include/mshift.h ../../include/mtop_util.h ../../include/mtxio.h ../../include/mvdata.h ../../include/names.h ../../include/network.h ../../include/nonbonded.h ../../include/nrama.h ../../include/nrjac.h ../../include/nrnb.h ../../include/nsgrid.h ../../include/ns.h ../../include/orires.h ../../include/partdec.h ../../include/pbc.h ../../include/pdbio.h ../../include/pdebug.h ../../include/perf_est.h ../../include/physics.h ../../include/pme.h ../../include/pppm.h ../../include/princ.h ../../include/pull.h ../../include/qmmm.h ../../include/random.h '/usr/src/tmp/gromacs-buildroot/usr/include/gromacs' /usr/libexec/rpm-build/install -p -m 644 ../../include/rbin.h ../../include/rdgroup.h ../../include/readcomp.h ../../include/readinp.h ../../include/reorder.h ../../include/rmpbc.h ../../include/shellfc.h ../../include/shift.h ../../include/smalloc.h ../../include/sortwater.h ../../include/sparsematrix.h ../../include/split.h ../../include/splitter.h ../../include/statusio.h ../../include/statutil.h ../../include/strdb.h ../../include/string2.h ../../include/struc2.h ../../include/symtab.h ../../include/sysstuff.h ../../include/tags.h ../../include/tgroup.h ../../include/topsort.h ../../include/tpxio.h ../../include/transfer.h ../../include/trnio.h ../../include/txtdump.h ../../include/typedefs.h ../../include/update.h ../../include/utils.h ../../include/vcm.h ../../include/vec.h ../../include/viewit.h ../../include/vsite.h ../../include/wgms.h ../../include/wman.h ../../include/writeps.h ../../include/xdrf.h ../../include/xtcio.h ../../include/xvgr.h '/usr/src/tmp/gromacs-buildroot/usr/include/gromacs' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/include' make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/include' Making install in types make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/include/types' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/include/types' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/include/gromacs/types' /usr/libexec/rpm-build/install -p -m 644 ../../../include/types/atoms.h ../../../include/types/forcerec.h ../../../include/types/ifunc.h ../../../include/types/mdatom.h ../../../include/types/simple.h ../../../include/types/block.h ../../../include/types/constr.h ../../../include/types/energy.h ../../../include/types/graph.h ../../../include/types/inputrec.h ../../../include/types/nblist.h ../../../include/types/ns.h ../../../include/types/nsgrid.h ../../../include/types/symtab.h ../../../include/types/commrec.h ../../../include/types/enums.h ../../../include/types/group.h ../../../include/types/ishift.h ../../../include/types/nbslist.h ../../../include/types/topology.h ../../../include/types/fcdata.h ../../../include/types/filenm.h ../../../include/types/idef.h ../../../include/types/matrix.h ../../../include/types/nrnb.h ../../../include/types/trx.h ../../../include/types/state.h ../../../include/types/pbc.h ../../../include/types/qmmmrec.h ../../../include/types/shellfc.h '/usr/src/tmp/gromacs-buildroot/usr/include/gromacs/types' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/include/types' make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/include/types' make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/include' Making install in src make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src' Making install in gmxlib make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' Making install in nonbonded make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded' Making install in nb_kernel_x86_64_sse make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse' Making install in nb_kernel make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make install-am make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded' make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded' Making install in gmx_blas make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas' Making install in gmx_lapack make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/lib64' /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p libgmx_mpi.la '/usr/src/tmp/gromacs-buildroot/usr/lib64' /usr/libexec/rpm-build/install -p .libs/libgmx_mpi.so.5.0.0 /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmx_mpi.so.5.0.0 (cd /usr/src/tmp/gromacs-buildroot/usr/lib64 && { ln -s -f libgmx_mpi.so.5.0.0 libgmx_mpi.so.5 || { rm -f libgmx_mpi.so.5 && ln -s libgmx_mpi.so.5.0.0 libgmx_mpi.so.5; }; }) (cd /usr/src/tmp/gromacs-buildroot/usr/lib64 && { ln -s -f libgmx_mpi.so.5.0.0 libgmx_mpi.so || { rm -f libgmx_mpi.so && ln -s libgmx_mpi.so.5.0.0 libgmx_mpi.so; }; }) /usr/libexec/rpm-build/install -p .libs/libgmx_mpi.lai /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmx_mpi.la libtool: install: warning: remember to run `libtool --finish /usr/lib64' make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib' Making install in mdlib make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib' /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/lib64' /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p libmd_mpi.la '/usr/src/tmp/gromacs-buildroot/usr/lib64' libtool: install: warning: relinking `libmd_mpi.la' (cd /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib; /bin/sh ../../libtool --tag=CC --mode=relink mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -version-info 5:0:0 -lgslcblas -o libmd_mpi.la -rpath /usr/lib64 calcmu.lo calcvir.lo constr.lo coupling.lo domdec.lo domdec_con.lo domdec_network.lo domdec_setup.lo domdec_top.lo ebin.lo edsam.lo ewald.lo fftgrid.lo force.lo ghat.lo init.lo mdatom.lo mdebin.lo minimize.lo mvxvf.lo ns.lo nsgrid.lo perf_est.lo pme.lo pme_pp.lo pppm.lo partdec.lo pull.lo pullutil.lo rf_util.lo shakef.lo sim_util.lo shellfc.lo stat.lo tables.lo tgroup.lo update.lo vcm.lo vsite.lo wall.lo wnblist.lo csettle.lo clincs.lo qmmm.lo gmx_fft.lo gmx_parallel_3dfft.lo gmx_wallcycle.lo qm_gaussian.lo gmx_fft_fftw3.lo ../gmxlib/libgmx_mpi.la -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -inst-prefix-dir /usr/src/tmp/gromacs-buildroot) mpicc -shared .libs/calcmu.o .libs/calcvir.o .libs/constr.o .libs/coupling.o .libs/domdec.o .libs/domdec_con.o .libs/domdec_network.o .libs/domdec_setup.o .libs/domdec_top.o .libs/ebin.o .libs/edsam.o .libs/ewald.o .libs/fftgrid.o .libs/force.o .libs/ghat.o .libs/init.o .libs/mdatom.o .libs/mdebin.o .libs/minimize.o .libs/mvxvf.o .libs/ns.o .libs/nsgrid.o .libs/perf_est.o .libs/pme.o .libs/pme_pp.o .libs/pppm.o .libs/partdec.o .libs/pull.o .libs/pullutil.o .libs/rf_util.o .libs/shakef.o .libs/sim_util.o .libs/shellfc.o .libs/stat.o .libs/tables.o .libs/tgroup.o .libs/update.o .libs/vcm.o .libs/vsite.o .libs/wall.o .libs/wnblist.o .libs/csettle.o .libs/clincs.o .libs/qmmm.o .libs/gmx_fft.o .libs/gmx_parallel_3dfft.o .libs/gmx_wallcycle.o .libs/qm_gaussian.o .libs/gmx_fft_fftw3.o -lgslcblas -L/usr/src/tmp/gromacs-buildroot/usr/lib64 -L/usr/lib64 -lgmx_mpi -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wl,-soname -Wl,libmd_mpi.so.5 -o .libs/libmd_mpi.so.5.0.0 /usr/libexec/rpm-build/install -p .libs/libmd_mpi.so.5.0.0T /usr/src/tmp/gromacs-buildroot/usr/lib64/libmd_mpi.so.5.0.0 (cd /usr/src/tmp/gromacs-buildroot/usr/lib64 && { ln -s -f libmd_mpi.so.5.0.0 libmd_mpi.so.5 || { rm -f libmd_mpi.so.5 && ln -s libmd_mpi.so.5.0.0 libmd_mpi.so.5; }; }) (cd /usr/src/tmp/gromacs-buildroot/usr/lib64 && { ln -s -f libmd_mpi.so.5.0.0 libmd_mpi.so || { rm -f libmd_mpi.so && ln -s libmd_mpi.so.5.0.0 libmd_mpi.so; }; }) /usr/libexec/rpm-build/install -p .libs/libmd_mpi.lai /usr/src/tmp/gromacs-buildroot/usr/lib64/libmd_mpi.la libtool: install: warning: remember to run `libtool --finish /usr/lib64' make install-exec-hook make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib' make[4]: Nothing to be done for 'install-exec-hook'. make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib' make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib' make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib' Making install in kernel make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/bin' /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p grompp '/usr/src/tmp/gromacs-buildroot/usr/bin/./grompp_mpi' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/grompp /usr/src/tmp/gromacs-buildroot/usr/bin/./grompp_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p mdrun '/usr/src/tmp/gromacs-buildroot/usr/bin/./mdrun_mpi' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/mdrun /usr/src/tmp/gromacs-buildroot/usr/bin/./mdrun_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p tpbconv '/usr/src/tmp/gromacs-buildroot/usr/bin/./tpbconv_mpi' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/tpbconv /usr/src/tmp/gromacs-buildroot/usr/bin/./tpbconv_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p pdb2gmx '/usr/src/tmp/gromacs-buildroot/usr/bin/./pdb2gmx_mpi' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/pdb2gmx /usr/src/tmp/gromacs-buildroot/usr/bin/./pdb2gmx_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p protonate '/usr/src/tmp/gromacs-buildroot/usr/bin/./protonate_mpi' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/protonate /usr/src/tmp/gromacs-buildroot/usr/bin/./protonate_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p luck '/usr/src/tmp/gromacs-buildroot/usr/bin/./luck_mpi' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/luck /usr/src/tmp/gromacs-buildroot/usr/bin/./luck_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p gmxdump '/usr/src/tmp/gromacs-buildroot/usr/bin/./gmxdump_mpi' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/gmxdump /usr/src/tmp/gromacs-buildroot/usr/bin/./gmxdump_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p gmxcheck '/usr/src/tmp/gromacs-buildroot/usr/bin/./gmxcheck_mpi' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/gmxcheck /usr/src/tmp/gromacs-buildroot/usr/bin/./gmxcheck_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p x2top '/usr/src/tmp/gromacs-buildroot/usr/bin/./x2top_mpi' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/x2top /usr/src/tmp/gromacs-buildroot/usr/bin/./x2top_mpi make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/kernel' Making install in tools make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/lib64' /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p libgmxana_mpi.la '/usr/src/tmp/gromacs-buildroot/usr/lib64' libtool: install: warning: relinking `libgmxana_mpi.la' (cd /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools; /bin/sh ../../libtool --tag=CC --mode=relink mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -version-info 5:0:0 -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o libgmxana_mpi.la -rpath /usr/lib64 autocorr.lo expfit.lo polynomials.lo levenmar.lo anadih.lo pp2shift.lo dlist.lo eigio.lo lsq.lo cmat.lo eigensolver.lo nsc.lo hxprops.lo fitahx.lo gmx_analyze.lo gmx_anaeig.lo gmx_angle.lo gmx_bond.lo gmx_bundle.lo gmx_chi.lo gmx_cluster.lo gmx_confrms.lo gmx_covar.lo gmx_current.lo gmx_density.lo gmx_densmap.lo gmx_dih.lo gmx_dielectric.lo gmx_kinetics.lo gmx_spatial.lo gmx_dipoles.lo gmx_disre.lo gmx_dist.lo gmx_dyndom.lo gmx_enemat.lo gmx_energy.lo gmx_lie.lo gmx_filter.lo gmx_gyrate.lo gmx_h2order.lo gmx_hbond.lo gmx_helix.lo gmx_mindist.lo gmx_msd.lo gmx_morph.lo gmx_nmeig.lo gmx_nmens.lo gmx_order.lo gmx_principal.lo gmx_polystat.lo gmx_potential.lo gmx_rama.lo gmx_rdf.lo gmx_rms.lo gmx_rmsdist.lo gmx_rmsf.lo gmx_rotacf.lo gmx_saltbr.lo gmx_sas.lo gmx_sdf.lo gmx_sgangle.lo gmx_sorient.lo gmx_spol.lo gmx_tcaf.lo gmx_traj.lo gmx_velacc.lo gmx_helixorient.lo gmx_clustsize.lo gmx_mdmat.lo gmx_wham.lo correl.lo gmx_sham.lo gmx_nmtraj.lo gmx_trjconv.lo gmx_trjcat.lo gmx_trjorder.lo gmx_xpm2ps.lo gmx_editconf.lo gmx_genbox.lo gmx_genion.lo gmx_genconf.lo gmx_genpr.lo gmx_eneconv.lo gmx_vanhove.lo gmx_wheel.lo addconf.lo calcpot.lo edittop.lo ../gmxlib/libgmx_mpi.la ../mdlib/libmd_mpi.la -lgsl -lfftw3f -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -lmpi -lopen-pal -lopen-rte -inst-prefix-dir /usr/src/tmp/gromacs-buildroot) mpicc -shared .libs/autocorr.o .libs/expfit.o .libs/polynomials.o .libs/levenmar.o .libs/anadih.o .libs/pp2shift.o .libs/dlist.o .libs/eigio.o .libs/lsq.o .libs/cmat.o .libs/eigensolver.o .libs/nsc.o .libs/hxprops.o .libs/fitahx.o .libs/gmx_analyze.o .libs/gmx_anaeig.o .libs/gmx_angle.o .libs/gmx_bond.o .libs/gmx_bundle.o .libs/gmx_chi.o .libs/gmx_cluster.o .libs/gmx_confrms.o .libs/gmx_covar.o .libs/gmx_current.o .libs/gmx_density.o .libs/gmx_densmap.o .libs/gmx_dih.o .libs/gmx_dielectric.o .libs/gmx_kinetics.o .libs/gmx_spatial.o .libs/gmx_dipoles.o .libs/gmx_disre.o .libs/gmx_dist.o .libs/gmx_dyndom.o .libs/gmx_enemat.o .libs/gmx_energy.o .libs/gmx_lie.o .libs/gmx_filter.o .libs/gmx_gyrate.o .libs/gmx_h2order.o .libs/gmx_hbond.o .libs/gmx_helix.o .libs/gmx_mindist.o .libs/gmx_msd.o .libs/gmx_morph.o .libs/gmx_nmeig.o .libs/gmx_nmens.o .libs/gmx_order.o .libs/gmx_principal.o .libs/gmx_polystat.o .libs/gmx_potential.o .libs/gmx_rama.o .libs/gmx_rdf.o .libs/gmx_rms.o .libs/gmx_rmsdist.o .libs/gmx_rmsf.o .libs/gmx_rotacf.o .libs/gmx_saltbr.o .libs/gmx_sas.o .libs/gmx_sdf.o .libs/gmx_sgangle.o .libs/gmx_sorient.o .libs/gmx_spol.o .libs/gmx_tcaf.o .libs/gmx_traj.o .libs/gmx_velacc.o .libs/gmx_helixorient.o .libs/gmx_clustsize.o .libs/gmx_mdmat.o .libs/gmx_wham.o .libs/correl.o .libs/gmx_sham.o .libs/gmx_nmtraj.o .libs/gmx_trjconv.o .libs/gmx_trjcat.o .libs/gmx_trjorder.o .libs/gmx_xpm2ps.o .libs/gmx_editconf.o .libs/gmx_genbox.o .libs/gmx_genion.o .libs/gmx_genconf.o .libs/gmx_genpr.o .libs/gmx_eneconv.o .libs/gmx_vanhove.o .libs/gmx_wheel.o .libs/addconf.o .libs/calcpot.o .libs/edittop.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs -L/usr/lib64/openmpi/lib -L/usr/src/tmp/gromacs-buildroot/usr/lib64 -L/usr/lib64 -lgsl -lfftw3f -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi -lmd_mpi -L/usr/src/tmp/gromacs-buildroot/usr/lib64/openmpi/lib -lmpi -lopen-pal -lopen-rte -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wl,-Rpath:/usr/lib64/openmpi/lib -Wl,-soname -Wl,libgmxana_mpi.so.5 -o .libs/libgmxana_mpi.so.5.0.0 /usr/libexec/rpm-build/install -p .libs/libgmxana_mpi.so.5.0.0T /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana_mpi.so.5.0.0 (cd /usr/src/tmp/gromacs-buildroot/usr/lib64 && { ln -s -f libgmxana_mpi.so.5.0.0 libgmxana_mpi.so.5 || { rm -f libgmxana_mpi.so.5 && ln -s libgmxana_mpi.so.5.0.0 libgmxana_mpi.so.5; }; }) (cd /usr/src/tmp/gromacs-buildroot/usr/lib64 && { ln -s -f libgmxana_mpi.so.5.0.0 libgmxana_mpi.so || { rm -f libgmxana_mpi.so && ln -s libgmxana_mpi.so.5.0.0 libgmxana_mpi.so; }; }) /usr/libexec/rpm-build/install -p .libs/libgmxana_mpi.lai /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana_mpi.la libtool: install: warning: remember to run `libtool --finish /usr/lib64' /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/bin' /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p do_dssp '/usr/src/tmp/gromacs-buildroot/usr/bin/./do_dssp_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/do_dssp /usr/src/tmp/gromacs-buildroot/usr/bin/./do_dssp_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p editconf '/usr/src/tmp/gromacs-buildroot/usr/bin/./editconf_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/editconf /usr/src/tmp/gromacs-buildroot/usr/bin/./editconf_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p eneconv '/usr/src/tmp/gromacs-buildroot/usr/bin/./eneconv_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/eneconv /usr/src/tmp/gromacs-buildroot/usr/bin/./eneconv_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p genbox '/usr/src/tmp/gromacs-buildroot/usr/bin/./genbox_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/genbox /usr/src/tmp/gromacs-buildroot/usr/bin/./genbox_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p genconf '/usr/src/tmp/gromacs-buildroot/usr/bin/./genconf_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/genconf /usr/src/tmp/gromacs-buildroot/usr/bin/./genconf_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p genrestr '/usr/src/tmp/gromacs-buildroot/usr/bin/./genrestr_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/genrestr /usr/src/tmp/gromacs-buildroot/usr/bin/./genrestr_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_nmtraj '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_nmtraj_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_nmtraj /usr/src/tmp/gromacs-buildroot/usr/bin/./g_nmtraj_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p make_ndx '/usr/src/tmp/gromacs-buildroot/usr/bin/./make_ndx_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/make_ndx /usr/src/tmp/gromacs-buildroot/usr/bin/./make_ndx_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p mk_angndx '/usr/src/tmp/gromacs-buildroot/usr/bin/./mk_angndx_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/mk_angndx /usr/src/tmp/gromacs-buildroot/usr/bin/./mk_angndx_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p trjcat '/usr/src/tmp/gromacs-buildroot/usr/bin/./trjcat_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/trjcat /usr/src/tmp/gromacs-buildroot/usr/bin/./trjcat_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p trjconv '/usr/src/tmp/gromacs-buildroot/usr/bin/./trjconv_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/trjconv /usr/src/tmp/gromacs-buildroot/usr/bin/./trjconv_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p trjorder '/usr/src/tmp/gromacs-buildroot/usr/bin/./trjorder_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/trjorder /usr/src/tmp/gromacs-buildroot/usr/bin/./trjorder_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p wheel '/usr/src/tmp/gromacs-buildroot/usr/bin/./wheel_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/wheel /usr/src/tmp/gromacs-buildroot/usr/bin/./wheel_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p xpm2ps '/usr/src/tmp/gromacs-buildroot/usr/bin/./xpm2ps_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/xpm2ps /usr/src/tmp/gromacs-buildroot/usr/bin/./xpm2ps_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p genion '/usr/src/tmp/gromacs-buildroot/usr/bin/./genion_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/genion /usr/src/tmp/gromacs-buildroot/usr/bin/./genion_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p anadock '/usr/src/tmp/gromacs-buildroot/usr/bin/./anadock_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/anadock /usr/src/tmp/gromacs-buildroot/usr/bin/./anadock_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p make_edi '/usr/src/tmp/gromacs-buildroot/usr/bin/./make_edi_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/make_edi /usr/src/tmp/gromacs-buildroot/usr/bin/./make_edi_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_analyze '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_analyze_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_analyze /usr/src/tmp/gromacs-buildroot/usr/bin/./g_analyze_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_anaeig '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_anaeig_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_anaeig /usr/src/tmp/gromacs-buildroot/usr/bin/./g_anaeig_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_angle '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_angle_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_angle /usr/src/tmp/gromacs-buildroot/usr/bin/./g_angle_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_bond '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_bond_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_bond /usr/src/tmp/gromacs-buildroot/usr/bin/./g_bond_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_bundle '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_bundle_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_bundle /usr/src/tmp/gromacs-buildroot/usr/bin/./g_bundle_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_chi '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_chi_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_chi /usr/src/tmp/gromacs-buildroot/usr/bin/./g_chi_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_cluster '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_cluster_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_cluster /usr/src/tmp/gromacs-buildroot/usr/bin/./g_cluster_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_confrms '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_confrms_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_confrms /usr/src/tmp/gromacs-buildroot/usr/bin/./g_confrms_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_covar '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_covar_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_covar /usr/src/tmp/gromacs-buildroot/usr/bin/./g_covar_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_current '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_current_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_current /usr/src/tmp/gromacs-buildroot/usr/bin/./g_current_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_density '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_density_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_density /usr/src/tmp/gromacs-buildroot/usr/bin/./g_density_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_densmap '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_densmap_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_densmap /usr/src/tmp/gromacs-buildroot/usr/bin/./g_densmap_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_dih '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_dih_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_dih /usr/src/tmp/gromacs-buildroot/usr/bin/./g_dih_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_dielectric '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_dielectric_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_dielectric /usr/src/tmp/gromacs-buildroot/usr/bin/./g_dielectric_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_helixorient '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_helixorient_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_helixorient /usr/src/tmp/gromacs-buildroot/usr/bin/./g_helixorient_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_principal '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_principal_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_principal /usr/src/tmp/gromacs-buildroot/usr/bin/./g_principal_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_dipoles '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_dipoles_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_dipoles /usr/src/tmp/gromacs-buildroot/usr/bin/./g_dipoles_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_disre '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_disre_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_disre /usr/src/tmp/gromacs-buildroot/usr/bin/./g_disre_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_dist '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_dist_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_dist /usr/src/tmp/gromacs-buildroot/usr/bin/./g_dist_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_dyndom '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_dyndom_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_dyndom /usr/src/tmp/gromacs-buildroot/usr/bin/./g_dyndom_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_enemat '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_enemat_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_enemat /usr/src/tmp/gromacs-buildroot/usr/bin/./g_enemat_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_energy '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_energy_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_energy /usr/src/tmp/gromacs-buildroot/usr/bin/./g_energy_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_lie '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_lie_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_lie /usr/src/tmp/gromacs-buildroot/usr/bin/./g_lie_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_filter '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_filter_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_filter /usr/src/tmp/gromacs-buildroot/usr/bin/./g_filter_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_gyrate '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_gyrate_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_gyrate /usr/src/tmp/gromacs-buildroot/usr/bin/./g_gyrate_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_h2order '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_h2order_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_h2order /usr/src/tmp/gromacs-buildroot/usr/bin/./g_h2order_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_hbond '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_hbond_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_hbond /usr/src/tmp/gromacs-buildroot/usr/bin/./g_hbond_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_helix '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_helix_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_helix /usr/src/tmp/gromacs-buildroot/usr/bin/./g_helix_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_mindist '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_mindist_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_mindist /usr/src/tmp/gromacs-buildroot/usr/bin/./g_mindist_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_msd '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_msd_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_msd /usr/src/tmp/gromacs-buildroot/usr/bin/./g_msd_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_morph '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_morph_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_morph /usr/src/tmp/gromacs-buildroot/usr/bin/./g_morph_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_nmeig '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_nmeig_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_nmeig /usr/src/tmp/gromacs-buildroot/usr/bin/./g_nmeig_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_nmens '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_nmens_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_nmens /usr/src/tmp/gromacs-buildroot/usr/bin/./g_nmens_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_order '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_order_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_order /usr/src/tmp/gromacs-buildroot/usr/bin/./g_order_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_polystat '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_polystat_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_polystat /usr/src/tmp/gromacs-buildroot/usr/bin/./g_polystat_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_potential '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_potential_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_potential /usr/src/tmp/gromacs-buildroot/usr/bin/./g_potential_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_rama '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_rama_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_rama /usr/src/tmp/gromacs-buildroot/usr/bin/./g_rama_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_rdf '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_rdf_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_rdf /usr/src/tmp/gromacs-buildroot/usr/bin/./g_rdf_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_rms '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_rms_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_rms /usr/src/tmp/gromacs-buildroot/usr/bin/./g_rms_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_rmsdist '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_rmsdist_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_rmsdist /usr/src/tmp/gromacs-buildroot/usr/bin/./g_rmsdist_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_rmsf '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_rmsf_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_rmsf /usr/src/tmp/gromacs-buildroot/usr/bin/./g_rmsf_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_rotacf '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_rotacf_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_rotacf /usr/src/tmp/gromacs-buildroot/usr/bin/./g_rotacf_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_saltbr '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_saltbr_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_saltbr /usr/src/tmp/gromacs-buildroot/usr/bin/./g_saltbr_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_sas '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_sas_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_sas /usr/src/tmp/gromacs-buildroot/usr/bin/./g_sas_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_sgangle '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_sgangle_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_sgangle /usr/src/tmp/gromacs-buildroot/usr/bin/./g_sgangle_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_sham '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_sham_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_sham /usr/src/tmp/gromacs-buildroot/usr/bin/./g_sham_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_sorient '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_sorient_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_sorient /usr/src/tmp/gromacs-buildroot/usr/bin/./g_sorient_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_spol '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_spol_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_spol /usr/src/tmp/gromacs-buildroot/usr/bin/./g_spol_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_sdf '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_sdf_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_sdf /usr/src/tmp/gromacs-buildroot/usr/bin/./g_sdf_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_spatial '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_spatial_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_spatial /usr/src/tmp/gromacs-buildroot/usr/bin/./g_spatial_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_tcaf '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_tcaf_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_tcaf /usr/src/tmp/gromacs-buildroot/usr/bin/./g_tcaf_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_traj '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_traj_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_traj /usr/src/tmp/gromacs-buildroot/usr/bin/./g_traj_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_vanhove '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_vanhove_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_vanhove /usr/src/tmp/gromacs-buildroot/usr/bin/./g_vanhove_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_velacc '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_velacc_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_velacc /usr/src/tmp/gromacs-buildroot/usr/bin/./g_velacc_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_clustsize '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_clustsize_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_clustsize /usr/src/tmp/gromacs-buildroot/usr/bin/./g_clustsize_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_mdmat '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_mdmat_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_mdmat /usr/src/tmp/gromacs-buildroot/usr/bin/./g_mdmat_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_wham '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_wham_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_wham /usr/src/tmp/gromacs-buildroot/usr/bin/./g_wham_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_kinetics '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_kinetics_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_kinetics /usr/src/tmp/gromacs-buildroot/usr/bin/./g_kinetics_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p sigeps '/usr/src/tmp/gromacs-buildroot/usr/bin/./sigeps_mpi' libtool: install: warning: `libgmxana_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/gmxlib/.libs/libgmx_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/mdlib/.libs/libmd_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/sigeps /usr/src/tmp/gromacs-buildroot/usr/bin/./sigeps_mpi make install-exec-hook make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' libname="libgmxana_mpi"; \ nompi="`echo $libname | sed -e 's,_mpi,,'`"; \ libdir="/usr/lib64"; \ if echo $libname | grep mpi >/dev/null ; then \ (cd $libdir && test -e $libname.a -a ! -e $nompi.a && ln -s $libname.a $nompi.a ; exit 0); \ (cd $libdir && test -e $libname.so -a ! -e $nompi.so && ln -s $libname.so $nompi.so ; exit 0); \ fi; make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/tools' Making install in ngmx make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx' /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/bin' /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p ngmx '/usr/src/tmp/gromacs-buildroot/usr/bin/./ngmx_mpi' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/ngmx /usr/src/tmp/gromacs-buildroot/usr/bin/./ngmx_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p xrama '/usr/src/tmp/gromacs-buildroot/usr/bin/./xrama_mpi' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/xrama /usr/src/tmp/gromacs-buildroot/usr/bin/./xrama_mpi /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p highway '/usr/src/tmp/gromacs-buildroot/usr/bin/./highway_mpi' libtool: install: warning: `../mdlib/libmd_mpi.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/highway /usr/src/tmp/gromacs-buildroot/usr/bin/./highway_mpi make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx' make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/ngmx' Making install in contrib make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/contrib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/contrib' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/contrib' make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src/contrib' make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src' make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src' make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/src' Making install in admin make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/admin' make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/admin' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/admin' make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/admin' Making install in scripts make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/scripts' make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/scripts' /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/bin' /usr/libexec/rpm-build/install -p GMXRC GMXRC.csh GMXRC.bash GMXRC.zsh '/usr/src/tmp/gromacs-buildroot/usr/bin' /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/bin' /usr/libexec/rpm-build/install -p ../../scripts/completion.csh ../../scripts/completion.bash ../../scripts/completion.zsh ../../scripts/demux.pl ../../scripts/xplor2gmx.pl '/usr/src/tmp/gromacs-buildroot/usr/bin' make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/scripts' make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/scripts' Making install in share make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share' Making install in top make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/top' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/top' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/top' /usr/libexec/rpm-build/install -p -m 644 ../../../share/top/ffgmx.itp ../../../share/top/ffgmxnb.itp ../../../share/top/ffgmxbon.itp ../../../share/top/ffgmx.atp ../../../share/top/ffgmx.hdb ../../../share/top/ffgmx.rtp ../../../share/top/ffgmx-c.tdb ../../../share/top/ffgmx-n.tdb ../../../share/top/ffgmx2.itp ../../../share/top/ffgmx2nb.itp ../../../share/top/ffgmx2bon.itp ../../../share/top/ffgmx2.atp ../../../share/top/ffgmx2.hdb ../../../share/top/ffgmx2.rtp ../../../share/top/ffgmx2-c.tdb ../../../share/top/ffgmx2-n.tdb ../../../share/top/ffG43a1.itp ../../../share/top/ffG43a1nb.itp ../../../share/top/ffG43a1bon.itp ../../../share/top/ffG43a1.atp ../../../share/top/ffG43a1.hdb ../../../share/top/ffG43a1.rtp ../../../share/top/ffG43a1-c.tdb ../../../share/top/ffG43a1-n.tdb ../../../share/top/ffG43a2.itp ../../../share/top/ffG43a2nb.itp ../../../share/top/ffG43a2bon.itp ../../../share/top/ffG43a2.atp ../../../share/top/ffG43a2.hdb ../../../share/top/ffG43a2.rtp ../../../share/top/ffG43a2-c.tdb ../../../share/top/ffG43a2-n.tdb ../../../share/top/ffgmx.ddb ../../../share/top/ffgmx2.ddb ../../../share/top/ffG43a1.ddb ../../../share/top/ffG43a2.ddb ../../../share/top/ffG45a3-c.tdb ../../../share/top/ffG45a3.atp ../../../share/top/ffG45a3.hdb ../../../share/top/ffG45a3.rtp '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/top' /usr/libexec/rpm-build/install -p -m 644 ../../../share/top/ffG45a3nb.itp ../../../share/top/ffG45a3-n.tdb ../../../share/top/ffG45a3.ddb ../../../share/top/ffG45a3.itp ../../../share/top/ffG45a3bon.itp ../../../share/top/ffG53a5-c.tdb ../../../share/top/ffG53a5.atp ../../../share/top/ffG53a5.hdb ../../../share/top/ffG53a5.rtp ../../../share/top/ffG53a5nb.itp ../../../share/top/ffG53a5-n.tdb ../../../share/top/ffG53a5.ddb ../../../share/top/ffG53a5.itp ../../../share/top/ffG53a5bon.itp ../../../share/top/ffG53a5.n2t ../../../share/top/ffG53a6-c.tdb ../../../share/top/ffG53a6.atp ../../../share/top/ffG53a6.hdb ../../../share/top/ffG53a6.rtp ../../../share/top/ffG53a6nb.itp ../../../share/top/ffG53a6-n.tdb ../../../share/top/ffG53a6.ddb ../../../share/top/ffG53a6.itp ../../../share/top/ffG53a6bon.itp ../../../share/top/ffoplsaa.atp ../../../share/top/ffoplsaa.itp ../../../share/top/ffoplsaabon.itp ../../../share/top/ffoplsaanb.itp ../../../share/top/ffoplsaa.hdb ../../../share/top/ffoplsaa-n.tdb ../../../share/top/ffoplsaa-c.tdb ../../../share/top/ffoplsaa.rtp ../../../share/top/ffoplsaa.ddb ../../../share/top/ffoplsaa.n2t ../../../share/top/ffencads-c.tdb ../../../share/top/ffencads.itp ../../../share/top/ffencadv-c.tdb ../../../share/top/ffencadv.itp ../../../share/top/ffencads-n.tdb ../../../share/top/ffencads.rtp '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/top' /usr/libexec/rpm-build/install -p -m 644 ../../../share/top/ffencadv-n.tdb ../../../share/top/ffencadv.rtp ../../../share/top/ffencads.atp ../../../share/top/ffencadsbon.itp ../../../share/top/ffencadv.atp ../../../share/top/ffencadvbon.itp ../../../share/top/ffencads.hdb ../../../share/top/ffencadsnb.itp ../../../share/top/ffencadv.hdb ../../../share/top/ffencadvnb.itp ../../../share/top/1mlg.itp ../../../share/top/2mlg.itp ../../../share/top/benzamide.itp ../../../share/top/bondadd.itp ../../../share/top/buck.itp ../../../share/top/decane.itp ../../../share/top/dlg.itp ../../../share/top/dmso.itp ../../../share/top/fa.itp ../../../share/top/ff_dum.itp ../../../share/top/flexspc.itp ../../../share/top/flexspce.itp ../../../share/top/flexwat-ferguson.itp ../../../share/top/h2p4o13.itp ../../../share/top/h2p8o25.itp ../../../share/top/h2po4.itp ../../../share/top/ions.itp ../../../share/top/methanol.itp ../../../share/top/spc.itp ../../../share/top/spce.itp ../../../share/top/tfe.itp ../../../share/top/tip3p.itp ../../../share/top/tip4p.itp ../../../share/top/urea.itp ../../../share/top/dgsolv.dat ../../../share/top/electroneg.dat ../../../share/top/dec50.gro ../../../share/top/dmso.gro ../../../share/top/spc216.gro ../../../share/top/tip4p.gro '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/top' /usr/libexec/rpm-build/install -p -m 644 ../../../share/top/urea+h2o.gro ../../../share/top/f3c.itp ../../../share/top/aminoacids.dat ../../../share/top/atommass.dat ../../../share/top/bromacs.dat ../../../share/top/ca-shift.dat ../../../share/top/cb-shift.dat ../../../share/top/co-shift.dat ../../../share/top/edissoc.dat ../../../share/top/FF.dat ../../../share/top/gurgle.dat ../../../share/top/ha-shift.dat ../../../share/top/links.dat ../../../share/top/phbres.dat ../../../share/top/random.dat ../../../share/top/refi_aa.dat ../../../share/top/specbond.dat ../../../share/top/surface.dat ../../../share/top/vdwradii.dat ../../../share/top/xlateat.dat ../../../share/top/highway.dat ../../../share/top/export.dlg ../../../share/top/bonds.dlg ../../../share/top/ss.map ../../../share/top/ps.m2p ../../../share/top/table6-10.xvg ../../../share/top/table6-11.xvg ../../../share/top/table6-12.xvg ../../../share/top/table6-8.xvg ../../../share/top/table6-9.xvg ../../../share/top/atom_nom.tbl ../../../share/top/gromacs.dtd ../../../share/top/tip5p.gro ../../../share/top/tip5p.itp ../../../share/top/sw.itp ../../../share/top/elements.dat '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/top' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/top' make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/top' Making install in tutor make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/tutor' Making install in nmr1 make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/tutor/nmr1' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/tutor/nmr1' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/nmr1' /usr/libexec/rpm-build/install -p -m 644 ../../../../share/tutor/nmr1/conf.gro ../../../../share/tutor/nmr1/grompp.mdp ../../../../share/tutor/nmr1/pep.pdb ../../../../share/tutor/nmr1/topol.top '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/nmr1' make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/tutor/nmr1' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/tutor/nmr1' Making install in nmr2 make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/tutor/nmr2' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/tutor/nmr2' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/nmr2' /usr/libexec/rpm-build/install -p -m 644 ../../../../share/tutor/nmr2/conf.gro ../../../../share/tutor/nmr2/genconf.gcp ../../../../share/tutor/nmr2/grompp.mdp ../../../../share/tutor/nmr2/pep.pdb ../../../../share/tutor/nmr2/topol.top '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/nmr2' make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/tutor/nmr2' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/tutor/nmr2' Making install in speptide make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/tutor/speptide' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/tutor/speptide' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/speptide' /usr/libexec/rpm-build/install -p -m 644 ../../../../share/tutor/speptide/em.mdp ../../../../share/tutor/speptide/full.mdp ../../../../share/tutor/speptide/pr.mdp ../../../../share/tutor/speptide/speptide.pdb '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/speptide' make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/tutor/speptide' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/tutor/speptide' Making install in water make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/tutor/water' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/tutor/water' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/water' /usr/libexec/rpm-build/install -p -m 644 ../../../../share/tutor/water/index.ndx ../../../../share/tutor/water/conf.gro ../../../../share/tutor/water/spc216.pdb ../../../../share/tutor/water/grompp.mdp ../../../../share/tutor/water/topol.top '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/water' make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/tutor/water' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/tutor/water' Making install in gmxdemo make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/tutor/gmxdemo' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/tutor/gmxdemo' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/gmxdemo' /usr/libexec/rpm-build/install -p -m 644 ../../../../share/tutor/gmxdemo/cpeptide.pdb '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/gmxdemo' /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/gmxdemo' /usr/libexec/rpm-build/install -p ../../../../share/tutor/gmxdemo/demo '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/gmxdemo/./demo_mpi' make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/tutor/gmxdemo' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/tutor/gmxdemo' Making install in methanol make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/tutor/methanol' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/tutor/methanol' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/methanol' /usr/libexec/rpm-build/install -p -m 644 ../../../../share/tutor/methanol/index.ndx ../../../../share/tutor/methanol/conf.gro ../../../../share/tutor/methanol/methanol.pdb ../../../../share/tutor/methanol/grompp.mdp ../../../../share/tutor/methanol/topol.top ../../../../share/tutor/methanol/methanol.itp '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/methanol' make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/tutor/methanol' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/tutor/methanol' Making install in mixed make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/tutor/mixed' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/tutor/mixed' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/mixed' /usr/libexec/rpm-build/install -p -m 644 ../../../../share/tutor/mixed/index.ndx ../../../../share/tutor/mixed/conf.gro ../../../../share/tutor/mixed/mixed.pdb ../../../../share/tutor/mixed/grompp.mdp ../../../../share/tutor/mixed/topol.top '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/mixed' make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/tutor/mixed' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/tutor/mixed' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/tutor' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/tutor' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/tutor' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/tutor' make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/tutor' Making install in template make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/template' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/template' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/template' /usr/libexec/rpm-build/install -p -m 644 ../../../share/template/template.c ../../../share/template/README Makefile.x86_64-alt-linux-gnu '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/template' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/template' make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/template' Making install in html make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/html' Making install in . make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/html' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/html' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html' /usr/libexec/rpm-build/install -p -m 644 ../../../share/html/online.html ../../../share/html/gmxfaq.html '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html' make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/html' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/html' Making install in images make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/html/images' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/html/images' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html/images' /usr/libexec/rpm-build/install -p -m 644 ../../../../share/html/images/features.gif ../../../../share/html/images/flow_leftrightup.gif ../../../../share/html/images/flow_vrule.gif ../../../../share/html/images/flow_down.gif ../../../../share/html/images/flow_leftup.gif ../../../../share/html/images/links.gif ../../../../share/html/images/articles.gif ../../../../share/html/images/flow_downleft.gif ../../../../share/html/images/flow_right+left.gif ../../../../share/html/images/mail.gif ../../../../share/html/images/bench.gif ../../../../share/html/images/flow_hline.gif ../../../../share/html/images/flow_right.gif ../../../../share/html/images/manual.gif ../../../../share/html/images/charts_down.gif ../../../../share/html/images/flow_left.gif ../../../../share/html/images/flow_rightleftdown.gif ../../../../share/html/images/gmxlogo_small.jpg ../../../../share/html/images/charts_up.gif ../../../../share/html/images/flow_leftright.gif ../../../../share/html/images/flow_uprightleft.gif ../../../../share/html/images/software.gif ../../../../share/html/images/faq.gif ../../../../share/html/images/flow_leftrightdown.gif ../../../../share/html/images/flow_vline.gif ../../../../share/html/images/topologies.gif ../../../../share/html/images/plotje.gif ../../../../share/html/images/xvgr.gif ../../../../share/html/images/1ctf-0.jpg ../../../../share/html/images/1ctf-0.2.jpg ../../../../share/html/images/1ctf-0.5.jpg ../../../../share/html/images/1ctf-1.jpg ../../../../share/html/images/1ctf-4.jpg ../../../../share/html/images/1ctf-10.jpg '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html/images' make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/html/images' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/html/images' Making install in online make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/html/online' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/html/online' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html/online' /usr/libexec/rpm-build/install -p -m 644 ../../../../share/html/online/cpt.html ../../../../share/html/online/dat.html ../../../../share/html/online/g_disre.html ../../../../share/html/online/g_sorient.html ../../../../share/html/online/ndx.html ../../../../share/html/online/dlg.html ../../../../share/html/online/g_dist.html ../../../../share/html/online/g_tcaf.html ../../../../share/html/online/ngmx.html ../../../../share/html/online/do_dssp.html ../../../../share/html/online/g_dyndom.html ../../../../share/html/online/g_traj.html ../../../../share/html/online/edi.html ../../../../share/html/online/g_enemat.html ../../../../share/html/online/g_velacc.html ../../../../share/html/online/options.html ../../../../share/html/online/editconf.html ../../../../share/html/online/g_energy.html ../../../../share/html/online/genbox.html ../../../../share/html/online/out.html ../../../../share/html/online/edo.html ../../../../share/html/online/g_gyrate.html ../../../../share/html/online/genconf.html ../../../../share/html/online/pdb.html ../../../../share/html/online/edr.html ../../../../share/html/online/g_h2order.html ../../../../share/html/online/genion.html ../../../../share/html/online/pdb2gmx.html ../../../../share/html/online/ene.html ../../../../share/html/online/g_hbond.html ../../../../share/html/online/genpr.html ../../../../share/html/online/protonate.html ../../../../share/html/online/eneconv.html ../../../../share/html/online/g_helix.html ../../../../share/html/online/getting_started.html ../../../../share/html/online/rtp.html ../../../../share/html/online/eps.html ../../../../share/html/online/g_lie.html ../../../../share/html/online/gmxcheck.html ../../../../share/html/online/tex.html '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html/online' /usr/libexec/rpm-build/install -p -m 644 ../../../../share/html/online/files.html ../../../../share/html/online/g_mdmat.html ../../../../share/html/online/gmxdump.html ../../../../share/html/online/top.html ../../../../share/html/online/flow.html ../../../../share/html/online/g_mindist.html ../../../../share/html/online/gro.html ../../../../share/html/online/tpa.html ../../../../share/html/online/g87.html ../../../../share/html/online/g_morph.html ../../../../share/html/online/grompp.html ../../../../share/html/online/tpb.html ../../../../share/html/online/g96.html ../../../../share/html/online/g_msd.html ../../../../share/html/online/hat.html ../../../../share/html/online/tpbconv.html ../../../../share/html/online/g_anaeig.html ../../../../share/html/online/g_nmeig.html ../../../../share/html/online/highway.html ../../../../share/html/online/tpr.html ../../../../share/html/online/g_analyze.html ../../../../share/html/online/g_nmens.html ../../../../share/html/online/include_bot.html ../../../../share/html/online/trj.html ../../../../share/html/online/g_angle.html ../../../../share/html/online/g_order.html ../../../../share/html/online/include_top.html ../../../../share/html/online/trjcat.html ../../../../share/html/online/g_bond.html ../../../../share/html/online/g_potential.html ../../../../share/html/online/itp.html ../../../../share/html/online/trjconv.html ../../../../share/html/online/g_bundle.html ../../../../share/html/online/g_rama.html ../../../../share/html/online/log.html ../../../../share/html/online/trjorder.html ../../../../share/html/online/g_chi.html ../../../../share/html/online/g_rdf.html ../../../../share/html/online/m2p.html ../../../../share/html/online/trr.html '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html/online' /usr/libexec/rpm-build/install -p -m 644 ../../../../share/html/online/g_cluster.html ../../../../share/html/online/g_rms.html ../../../../share/html/online/make_ndx.html ../../../../share/html/online/wheel.html ../../../../share/html/online/g_confrms.html ../../../../share/html/online/g_rmsdist.html ../../../../share/html/online/map.html ../../../../share/html/online/x2top.html ../../../../share/html/online/g_covar.html ../../../../share/html/online/g_rmsf.html ../../../../share/html/online/mdp.html ../../../../share/html/online/xpm.html ../../../../share/html/online/g_density.html ../../../../share/html/online/g_rotacf.html ../../../../share/html/online/mdp_opt.html ../../../../share/html/online/xpm2ps.html ../../../../share/html/online/g_dielectric.html ../../../../share/html/online/g_saltbr.html ../../../../share/html/online/mdrun.html ../../../../share/html/online/xrama.html ../../../../share/html/online/g_dih.html ../../../../share/html/online/g_sas.html ../../../../share/html/online/mk_angndx.html ../../../../share/html/online/xtc.html ../../../../share/html/online/g_dipoles.html ../../../../share/html/online/g_sgangle.html ../../../../share/html/online/mtx.html ../../../../share/html/online/xvg.html ../../../../share/html/online/g_densmap.html ../../../../share/html/online/g_sham.html ../../../../share/html/online/make_edi.html ../../../../share/html/online/style.css ../../../../share/html/online/water.html ../../../../share/html/online/gmxdemo.html ../../../../share/html/online/speptide.html ../../../../share/html/online/yourown.html ../../../../share/html/online/methanol.html ../../../../share/html/online/mixed.html ../../../../share/html/online/protunf.html '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html/online' make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/html/online' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/html/online' make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share/html' make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share' make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share' make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/share' Making install in man make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/man' Making install in man1 make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/man/man1' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/man/man1' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/anadock.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/anadock_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/do_dssp.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/do_dssp_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/editconf.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/editconf_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/eneconv.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/eneconv_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_anaeig.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_anaeig_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_analyze.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_analyze_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_angle.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_angle_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_bond.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_bond_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_bundle.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_bundle_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_chi.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_chi_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_cluster.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_cluster_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_clustsize.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_clustsize_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_confrms.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_confrms_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_covar.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_covar_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_current.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_current_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_density.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_density_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_densmap.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_densmap_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_dielectric.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_dielectric_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_dih.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_dih_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_dipoles.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_dipoles_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_disre.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_disre_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_dist.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_dist_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_dyndom.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_dyndom_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_enemat.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_enemat_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_energy.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_energy_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_filter.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_filter_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_gyrate.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_gyrate_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_h2order.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_h2order_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_hbond.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_hbond_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_helix.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_helix_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_helixorient.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_helixorient_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_kinetics.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_kinetics_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_lie.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_lie_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_mdmat.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_mdmat_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_mindist.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_mindist_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_morph.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_morph_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_msd.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_msd_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_nmeig.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_nmeig_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_nmens.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_nmens_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_nmtraj.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_nmtraj_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_order.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_order_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_polystat.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_polystat_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_potential.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_potential_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_principal.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_principal_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_rama.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_rama_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_rdf.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_rdf_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_rms.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_rms_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_rmsdist.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_rmsdist_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_rmsf.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_rmsf_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_rotacf.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_rotacf_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_saltbr.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_saltbr_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_sas.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_sas_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_sdf.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_sdf_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_sgangle.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_sgangle_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_sham.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_sham_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_sorient.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_sorient_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_spatial.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_spatial_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_spol.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_spol_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_tcaf.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_tcaf_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_traj.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_traj_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_vanhove.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_vanhove_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_velacc.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_velacc_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_wham.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_wham_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/gen_table.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/gen_table_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/genbox.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/genbox_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/genconf.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/genconf_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/genion.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/genion_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/genrestr.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/genrestr_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/gmxcheck.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/gmxcheck_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/gmxdump.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/gmxdump_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/grompp.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/grompp_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/highway.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/highway_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/make_edi.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/make_edi_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/make_ndx.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/make_ndx_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/mdrun.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/mdrun_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/mk_angndx.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/mk_angndx_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/ngmx.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/ngmx_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/pdb2gmx.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/pdb2gmx_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/protonate.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/protonate_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/sigeps.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/sigeps_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/tpbconv.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/tpbconv_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/trjcat.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/trjcat_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/trjconv.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/trjconv_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/trjorder.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/trjorder_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/wheel.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/wheel_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/x2top.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/x2top_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/xpm2ps.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/xpm2ps_mpi.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/xrama.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/xrama_mpi.1' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/man/man1' make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/man/man1' make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/man' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/man' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/man' make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/man' make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single/man' make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single' make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single' make install-exec-hook make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single' GROMACS is installed under /usr. Make sure to update your PATH and MANPATH to find the programs and unix manual pages, and possibly LD_LIBRARY_PATH or /etc/ld.so.conf if you are using dynamic libraries. Please run "make tests" now to verify your installation. If you want links to the executables in /usr/local/bin, you can issue "make links" now. make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single' make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single' make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single' make: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-single' + popd ~/RPM/BUILD/gromacs-4.0.7 + pushd mpi-double ~/RPM/BUILD/gromacs-4.0.7/mpi-double ~/RPM/BUILD/gromacs-4.0.7 + make 'INSTALL=/usr/libexec/rpm-build/install -p' install DESTDIR=/usr/src/tmp/gromacs-buildroot make: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double' Making install in include make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/include' Making install in . make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/include' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/include' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/include/gromacs' /usr/libexec/rpm-build/install -p -m 644 ../../include/3dview.h ../../include/assert.h ../../include/atomprop.h ../../include/bondf.h ../../include/calcgrid.h ../../include/calch.h ../../include/calcmu.h ../../include/checkpoint.h ../../include/confio.h ../../include/constr.h ../../include/copyrite.h ../../include/coulomb.h ../../include/dihre.h ../../include/disre.h ../../include/domdec.h ../../include/domdec_network.h ../../include/do_fit.h ../../include/ebin.h ../../include/edsam.h ../../include/enxio.h ../../include/gmx_fatal.h ../../include/ffscanf.h ../../include/fftgrid.h ../../include/filenm.h ../../include/force.h ../../include/futil.h ../../include/gbutil.h ../../include/gmx_ana.h ../../include/gmx_arpack.h ../../include/gmx_blas.h ../../include/gmxcomplex.h ../../include/gmx_cyclecounter.h ../../include/gmxfio.h ../../include/gmx_fft.h ../../include/gmx_lapack.h ../../include/gmx_random.h ../../include/gmx_parallel_3dfft.h ../../include/gmx_system_xdr.h ../../include/gmx_thread.h ../../include/gmx_wallcycle.h '/usr/src/tmp/gromacs-buildroot/usr/include/gromacs' /usr/libexec/rpm-build/install -p -m 644 ../../include/gpp_atomtype.h ../../include/gpp_nextnb.h ../../include/grompp.h ../../include/gstat.h ../../include/index.h ../../include/invblock.h ../../include/macros.h ../../include/magic.h ../../include/main.h ../../include/maths.h ../../include/matio.h ../../include/mdatoms.h ../../include/mdebin.h ../../include/mdrun.h ../../include/mpelogging.h ../../include/mshift.h ../../include/mtop_util.h ../../include/mtxio.h ../../include/mvdata.h ../../include/names.h ../../include/network.h ../../include/nonbonded.h ../../include/nrama.h ../../include/nrjac.h ../../include/nrnb.h ../../include/nsgrid.h ../../include/ns.h ../../include/orires.h ../../include/partdec.h ../../include/pbc.h ../../include/pdbio.h ../../include/pdebug.h ../../include/perf_est.h ../../include/physics.h ../../include/pme.h ../../include/pppm.h ../../include/princ.h ../../include/pull.h ../../include/qmmm.h ../../include/random.h '/usr/src/tmp/gromacs-buildroot/usr/include/gromacs' /usr/libexec/rpm-build/install -p -m 644 ../../include/rbin.h ../../include/rdgroup.h ../../include/readcomp.h ../../include/readinp.h ../../include/reorder.h ../../include/rmpbc.h ../../include/shellfc.h ../../include/shift.h ../../include/smalloc.h ../../include/sortwater.h ../../include/sparsematrix.h ../../include/split.h ../../include/splitter.h ../../include/statusio.h ../../include/statutil.h ../../include/strdb.h ../../include/string2.h ../../include/struc2.h ../../include/symtab.h ../../include/sysstuff.h ../../include/tags.h ../../include/tgroup.h ../../include/topsort.h ../../include/tpxio.h ../../include/transfer.h ../../include/trnio.h ../../include/txtdump.h ../../include/typedefs.h ../../include/update.h ../../include/utils.h ../../include/vcm.h ../../include/vec.h ../../include/viewit.h ../../include/vsite.h ../../include/wgms.h ../../include/wman.h ../../include/writeps.h ../../include/xdrf.h ../../include/xtcio.h ../../include/xvgr.h '/usr/src/tmp/gromacs-buildroot/usr/include/gromacs' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/include' make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/include' Making install in types make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/include/types' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/include/types' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/include/gromacs/types' /usr/libexec/rpm-build/install -p -m 644 ../../../include/types/atoms.h ../../../include/types/forcerec.h ../../../include/types/ifunc.h ../../../include/types/mdatom.h ../../../include/types/simple.h ../../../include/types/block.h ../../../include/types/constr.h ../../../include/types/energy.h ../../../include/types/graph.h ../../../include/types/inputrec.h ../../../include/types/nblist.h ../../../include/types/ns.h ../../../include/types/nsgrid.h ../../../include/types/symtab.h ../../../include/types/commrec.h ../../../include/types/enums.h ../../../include/types/group.h ../../../include/types/ishift.h ../../../include/types/nbslist.h ../../../include/types/topology.h ../../../include/types/fcdata.h ../../../include/types/filenm.h ../../../include/types/idef.h ../../../include/types/matrix.h ../../../include/types/nrnb.h ../../../include/types/trx.h ../../../include/types/state.h ../../../include/types/pbc.h ../../../include/types/qmmmrec.h ../../../include/types/shellfc.h '/usr/src/tmp/gromacs-buildroot/usr/include/gromacs/types' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/include/types' make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/include/types' make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/include' Making install in src make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src' Making install in gmxlib make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' Making install in nonbonded make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded' Making install in nb_kernel_x86_64_sse2 make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2' Making install in nb_kernel make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make install-am make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[6]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded' make[5]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded' make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded' Making install in gmx_blas make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas' Making install in gmx_lapack make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/lib64' /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p libgmx_mpi_d.la '/usr/src/tmp/gromacs-buildroot/usr/lib64' /usr/libexec/rpm-build/install -p .libs/libgmx_mpi_d.so.5.0.0 /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmx_mpi_d.so.5.0.0 (cd /usr/src/tmp/gromacs-buildroot/usr/lib64 && { ln -s -f libgmx_mpi_d.so.5.0.0 libgmx_mpi_d.so.5 || { rm -f libgmx_mpi_d.so.5 && ln -s libgmx_mpi_d.so.5.0.0 libgmx_mpi_d.so.5; }; }) (cd /usr/src/tmp/gromacs-buildroot/usr/lib64 && { ln -s -f libgmx_mpi_d.so.5.0.0 libgmx_mpi_d.so || { rm -f libgmx_mpi_d.so && ln -s libgmx_mpi_d.so.5.0.0 libgmx_mpi_d.so; }; }) /usr/libexec/rpm-build/install -p .libs/libgmx_mpi_d.lai /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmx_mpi_d.la libtool: install: warning: remember to run `libtool --finish /usr/lib64' make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib' Making install in mdlib make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib' /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/lib64' /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p libmd_mpi_d.la '/usr/src/tmp/gromacs-buildroot/usr/lib64' libtool: install: warning: relinking `libmd_mpi_d.la' (cd /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib; /bin/sh ../../libtool --tag=CC --mode=relink mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -version-info 5:0:0 -lgslcblas -o libmd_mpi_d.la -rpath /usr/lib64 calcmu.lo calcvir.lo constr.lo coupling.lo domdec.lo domdec_con.lo domdec_network.lo domdec_setup.lo domdec_top.lo ebin.lo edsam.lo ewald.lo fftgrid.lo force.lo ghat.lo init.lo mdatom.lo mdebin.lo minimize.lo mvxvf.lo ns.lo nsgrid.lo perf_est.lo pme.lo pme_pp.lo pppm.lo partdec.lo pull.lo pullutil.lo rf_util.lo shakef.lo sim_util.lo shellfc.lo stat.lo tables.lo tgroup.lo update.lo vcm.lo vsite.lo wall.lo wnblist.lo csettle.lo clincs.lo qmmm.lo gmx_fft.lo gmx_parallel_3dfft.lo gmx_wallcycle.lo qm_gaussian.lo gmx_fft_fftw3.lo ../gmxlib/libgmx_mpi_d.la -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -inst-prefix-dir /usr/src/tmp/gromacs-buildroot) mpicc -shared .libs/calcmu.o .libs/calcvir.o .libs/constr.o .libs/coupling.o .libs/domdec.o .libs/domdec_con.o .libs/domdec_network.o .libs/domdec_setup.o .libs/domdec_top.o .libs/ebin.o .libs/edsam.o .libs/ewald.o .libs/fftgrid.o .libs/force.o .libs/ghat.o .libs/init.o .libs/mdatom.o .libs/mdebin.o .libs/minimize.o .libs/mvxvf.o .libs/ns.o .libs/nsgrid.o .libs/perf_est.o .libs/pme.o .libs/pme_pp.o .libs/pppm.o .libs/partdec.o .libs/pull.o .libs/pullutil.o .libs/rf_util.o .libs/shakef.o .libs/sim_util.o .libs/shellfc.o .libs/stat.o .libs/tables.o .libs/tgroup.o .libs/update.o .libs/vcm.o .libs/vsite.o .libs/wall.o .libs/wnblist.o .libs/csettle.o .libs/clincs.o .libs/qmmm.o .libs/gmx_fft.o .libs/gmx_parallel_3dfft.o .libs/gmx_wallcycle.o .libs/qm_gaussian.o .libs/gmx_fft_fftw3.o -lgslcblas -L/usr/src/tmp/gromacs-buildroot/usr/lib64 -L/usr/lib64 -lgmx_mpi_d -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wl,-soname -Wl,libmd_mpi_d.so.5 -o .libs/libmd_mpi_d.so.5.0.0 /usr/libexec/rpm-build/install -p .libs/libmd_mpi_d.so.5.0.0T /usr/src/tmp/gromacs-buildroot/usr/lib64/libmd_mpi_d.so.5.0.0 (cd /usr/src/tmp/gromacs-buildroot/usr/lib64 && { ln -s -f libmd_mpi_d.so.5.0.0 libmd_mpi_d.so.5 || { rm -f libmd_mpi_d.so.5 && ln -s libmd_mpi_d.so.5.0.0 libmd_mpi_d.so.5; }; }) (cd /usr/src/tmp/gromacs-buildroot/usr/lib64 && { ln -s -f libmd_mpi_d.so.5.0.0 libmd_mpi_d.so || { rm -f libmd_mpi_d.so && ln -s libmd_mpi_d.so.5.0.0 libmd_mpi_d.so; }; }) /usr/libexec/rpm-build/install -p .libs/libmd_mpi_d.lai /usr/src/tmp/gromacs-buildroot/usr/lib64/libmd_mpi_d.la libtool: install: warning: remember to run `libtool --finish /usr/lib64' make install-exec-hook make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib' make[4]: Nothing to be done for 'install-exec-hook'. make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib' make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib' make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib' Making install in kernel make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/bin' /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p grompp '/usr/src/tmp/gromacs-buildroot/usr/bin/./grompp_mpi_d' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/grompp /usr/src/tmp/gromacs-buildroot/usr/bin/./grompp_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p mdrun '/usr/src/tmp/gromacs-buildroot/usr/bin/./mdrun_mpi_d' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/mdrun /usr/src/tmp/gromacs-buildroot/usr/bin/./mdrun_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p tpbconv '/usr/src/tmp/gromacs-buildroot/usr/bin/./tpbconv_mpi_d' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/tpbconv /usr/src/tmp/gromacs-buildroot/usr/bin/./tpbconv_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p pdb2gmx '/usr/src/tmp/gromacs-buildroot/usr/bin/./pdb2gmx_mpi_d' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/pdb2gmx /usr/src/tmp/gromacs-buildroot/usr/bin/./pdb2gmx_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p protonate '/usr/src/tmp/gromacs-buildroot/usr/bin/./protonate_mpi_d' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/protonate /usr/src/tmp/gromacs-buildroot/usr/bin/./protonate_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p luck '/usr/src/tmp/gromacs-buildroot/usr/bin/./luck_mpi_d' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/luck /usr/src/tmp/gromacs-buildroot/usr/bin/./luck_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p gmxdump '/usr/src/tmp/gromacs-buildroot/usr/bin/./gmxdump_mpi_d' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/gmxdump /usr/src/tmp/gromacs-buildroot/usr/bin/./gmxdump_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p gmxcheck '/usr/src/tmp/gromacs-buildroot/usr/bin/./gmxcheck_mpi_d' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/gmxcheck /usr/src/tmp/gromacs-buildroot/usr/bin/./gmxcheck_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p x2top '/usr/src/tmp/gromacs-buildroot/usr/bin/./x2top_mpi_d' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/x2top /usr/src/tmp/gromacs-buildroot/usr/bin/./x2top_mpi_d make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/kernel' Making install in tools make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/lib64' /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p libgmxana_mpi_d.la '/usr/src/tmp/gromacs-buildroot/usr/lib64' libtool: install: warning: relinking `libgmxana_mpi_d.la' (cd /usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools; /bin/sh ../../libtool --tag=CC --mode=relink mpicc -g -pipe -O2 -Wall -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wa,--noexecstack -version-info 5:0:0 -Wl,-Rpath:/usr/lib64/openmpi/lib -Wa,--noexecstack -fPIC -L../gmxlib/.libs -L../mdlib/.libs -L/usr/lib64/openmpi/lib -o libgmxana_mpi_d.la -rpath /usr/lib64 autocorr.lo expfit.lo polynomials.lo levenmar.lo anadih.lo pp2shift.lo dlist.lo eigio.lo lsq.lo cmat.lo eigensolver.lo nsc.lo hxprops.lo fitahx.lo gmx_analyze.lo gmx_anaeig.lo gmx_angle.lo gmx_bond.lo gmx_bundle.lo gmx_chi.lo gmx_cluster.lo gmx_confrms.lo gmx_covar.lo gmx_current.lo gmx_density.lo gmx_densmap.lo gmx_dih.lo gmx_dielectric.lo gmx_kinetics.lo gmx_spatial.lo gmx_dipoles.lo gmx_disre.lo gmx_dist.lo gmx_dyndom.lo gmx_enemat.lo gmx_energy.lo gmx_lie.lo gmx_filter.lo gmx_gyrate.lo gmx_h2order.lo gmx_hbond.lo gmx_helix.lo gmx_mindist.lo gmx_msd.lo gmx_morph.lo gmx_nmeig.lo gmx_nmens.lo gmx_order.lo gmx_principal.lo gmx_polystat.lo gmx_potential.lo gmx_rama.lo gmx_rdf.lo gmx_rms.lo gmx_rmsdist.lo gmx_rmsf.lo gmx_rotacf.lo gmx_saltbr.lo gmx_sas.lo gmx_sdf.lo gmx_sgangle.lo gmx_sorient.lo gmx_spol.lo gmx_tcaf.lo gmx_traj.lo gmx_velacc.lo gmx_helixorient.lo gmx_clustsize.lo gmx_mdmat.lo gmx_wham.lo correl.lo gmx_sham.lo gmx_nmtraj.lo gmx_trjconv.lo gmx_trjcat.lo gmx_trjorder.lo gmx_xpm2ps.lo gmx_editconf.lo gmx_genbox.lo gmx_genion.lo gmx_genconf.lo gmx_genpr.lo gmx_eneconv.lo gmx_vanhove.lo gmx_wheel.lo addconf.lo calcpot.lo edittop.lo ../gmxlib/libgmx_mpi_d.la ../mdlib/libmd_mpi_d.la -lgsl -lfftw3 -lm -lopenblas -llapack -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -lmpi -lopen-pal -lopen-rte -inst-prefix-dir /usr/src/tmp/gromacs-buildroot) mpicc -shared .libs/autocorr.o .libs/expfit.o .libs/polynomials.o .libs/levenmar.o .libs/anadih.o .libs/pp2shift.o .libs/dlist.o .libs/eigio.o .libs/lsq.o .libs/cmat.o .libs/eigensolver.o .libs/nsc.o .libs/hxprops.o .libs/fitahx.o .libs/gmx_analyze.o .libs/gmx_anaeig.o .libs/gmx_angle.o .libs/gmx_bond.o .libs/gmx_bundle.o .libs/gmx_chi.o .libs/gmx_cluster.o .libs/gmx_confrms.o .libs/gmx_covar.o .libs/gmx_current.o .libs/gmx_density.o .libs/gmx_densmap.o .libs/gmx_dih.o .libs/gmx_dielectric.o .libs/gmx_kinetics.o .libs/gmx_spatial.o .libs/gmx_dipoles.o .libs/gmx_disre.o .libs/gmx_dist.o .libs/gmx_dyndom.o .libs/gmx_enemat.o .libs/gmx_energy.o .libs/gmx_lie.o .libs/gmx_filter.o .libs/gmx_gyrate.o .libs/gmx_h2order.o .libs/gmx_hbond.o .libs/gmx_helix.o .libs/gmx_mindist.o .libs/gmx_msd.o .libs/gmx_morph.o .libs/gmx_nmeig.o .libs/gmx_nmens.o .libs/gmx_order.o .libs/gmx_principal.o .libs/gmx_polystat.o .libs/gmx_potential.o .libs/gmx_rama.o .libs/gmx_rdf.o .libs/gmx_rms.o .libs/gmx_rmsdist.o .libs/gmx_rmsf.o .libs/gmx_rotacf.o .libs/gmx_saltbr.o .libs/gmx_sas.o .libs/gmx_sdf.o .libs/gmx_sgangle.o .libs/gmx_sorient.o .libs/gmx_spol.o .libs/gmx_tcaf.o .libs/gmx_traj.o .libs/gmx_velacc.o .libs/gmx_helixorient.o .libs/gmx_clustsize.o .libs/gmx_mdmat.o .libs/gmx_wham.o .libs/correl.o .libs/gmx_sham.o .libs/gmx_nmtraj.o .libs/gmx_trjconv.o .libs/gmx_trjcat.o .libs/gmx_trjorder.o .libs/gmx_xpm2ps.o .libs/gmx_editconf.o .libs/gmx_genbox.o .libs/gmx_genion.o .libs/gmx_genconf.o .libs/gmx_genpr.o .libs/gmx_eneconv.o .libs/gmx_vanhove.o .libs/gmx_wheel.o .libs/addconf.o .libs/calcpot.o .libs/edittop.o -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs -L/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs -L/usr/lib64/openmpi/lib -L/usr/src/tmp/gromacs-buildroot/usr/lib64 -L/usr/lib64 -lgsl -lfftw3 -lSM -lICE -lX11 -L/usr/lib64/gcc/x86_64-alt-linux/8 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-alt-linux/8/../../.. -lopenblas -llapack -lgfortran -lm -lquadmath -lgmx_mpi_d -lmd_mpi_d -L/usr/src/tmp/gromacs-buildroot/usr/lib64/openmpi/lib -lmpi -lopen-pal -lopen-rte -Wl,-Rpath:/usr/lib64/openmpi/lib/ -Wl,-Rpath:/usr/lib64/openmpi/lib -Wl,-soname -Wl,libgmxana_mpi_d.so.5 -o .libs/libgmxana_mpi_d.so.5.0.0 /usr/libexec/rpm-build/install -p .libs/libgmxana_mpi_d.so.5.0.0T /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana_mpi_d.so.5.0.0 (cd /usr/src/tmp/gromacs-buildroot/usr/lib64 && { ln -s -f libgmxana_mpi_d.so.5.0.0 libgmxana_mpi_d.so.5 || { rm -f libgmxana_mpi_d.so.5 && ln -s libgmxana_mpi_d.so.5.0.0 libgmxana_mpi_d.so.5; }; }) (cd /usr/src/tmp/gromacs-buildroot/usr/lib64 && { ln -s -f libgmxana_mpi_d.so.5.0.0 libgmxana_mpi_d.so || { rm -f libgmxana_mpi_d.so && ln -s libgmxana_mpi_d.so.5.0.0 libgmxana_mpi_d.so; }; }) /usr/libexec/rpm-build/install -p .libs/libgmxana_mpi_d.lai /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana_mpi_d.la libtool: install: warning: remember to run `libtool --finish /usr/lib64' /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/bin' /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p do_dssp '/usr/src/tmp/gromacs-buildroot/usr/bin/./do_dssp_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/do_dssp /usr/src/tmp/gromacs-buildroot/usr/bin/./do_dssp_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p editconf '/usr/src/tmp/gromacs-buildroot/usr/bin/./editconf_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/editconf /usr/src/tmp/gromacs-buildroot/usr/bin/./editconf_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p eneconv '/usr/src/tmp/gromacs-buildroot/usr/bin/./eneconv_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/eneconv /usr/src/tmp/gromacs-buildroot/usr/bin/./eneconv_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p genbox '/usr/src/tmp/gromacs-buildroot/usr/bin/./genbox_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/genbox /usr/src/tmp/gromacs-buildroot/usr/bin/./genbox_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p genconf '/usr/src/tmp/gromacs-buildroot/usr/bin/./genconf_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/genconf /usr/src/tmp/gromacs-buildroot/usr/bin/./genconf_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p genrestr '/usr/src/tmp/gromacs-buildroot/usr/bin/./genrestr_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/genrestr /usr/src/tmp/gromacs-buildroot/usr/bin/./genrestr_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_nmtraj '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_nmtraj_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_nmtraj /usr/src/tmp/gromacs-buildroot/usr/bin/./g_nmtraj_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p make_ndx '/usr/src/tmp/gromacs-buildroot/usr/bin/./make_ndx_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/make_ndx /usr/src/tmp/gromacs-buildroot/usr/bin/./make_ndx_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p mk_angndx '/usr/src/tmp/gromacs-buildroot/usr/bin/./mk_angndx_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/mk_angndx /usr/src/tmp/gromacs-buildroot/usr/bin/./mk_angndx_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p trjcat '/usr/src/tmp/gromacs-buildroot/usr/bin/./trjcat_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/trjcat /usr/src/tmp/gromacs-buildroot/usr/bin/./trjcat_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p trjconv '/usr/src/tmp/gromacs-buildroot/usr/bin/./trjconv_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/trjconv /usr/src/tmp/gromacs-buildroot/usr/bin/./trjconv_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p trjorder '/usr/src/tmp/gromacs-buildroot/usr/bin/./trjorder_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/trjorder /usr/src/tmp/gromacs-buildroot/usr/bin/./trjorder_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p wheel '/usr/src/tmp/gromacs-buildroot/usr/bin/./wheel_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/wheel /usr/src/tmp/gromacs-buildroot/usr/bin/./wheel_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p xpm2ps '/usr/src/tmp/gromacs-buildroot/usr/bin/./xpm2ps_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/xpm2ps /usr/src/tmp/gromacs-buildroot/usr/bin/./xpm2ps_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p genion '/usr/src/tmp/gromacs-buildroot/usr/bin/./genion_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/genion /usr/src/tmp/gromacs-buildroot/usr/bin/./genion_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p anadock '/usr/src/tmp/gromacs-buildroot/usr/bin/./anadock_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/anadock /usr/src/tmp/gromacs-buildroot/usr/bin/./anadock_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p make_edi '/usr/src/tmp/gromacs-buildroot/usr/bin/./make_edi_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/make_edi /usr/src/tmp/gromacs-buildroot/usr/bin/./make_edi_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_analyze '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_analyze_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_analyze /usr/src/tmp/gromacs-buildroot/usr/bin/./g_analyze_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_anaeig '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_anaeig_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_anaeig /usr/src/tmp/gromacs-buildroot/usr/bin/./g_anaeig_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_angle '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_angle_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_angle /usr/src/tmp/gromacs-buildroot/usr/bin/./g_angle_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_bond '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_bond_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_bond /usr/src/tmp/gromacs-buildroot/usr/bin/./g_bond_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_bundle '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_bundle_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_bundle /usr/src/tmp/gromacs-buildroot/usr/bin/./g_bundle_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_chi '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_chi_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_chi /usr/src/tmp/gromacs-buildroot/usr/bin/./g_chi_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_cluster '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_cluster_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_cluster /usr/src/tmp/gromacs-buildroot/usr/bin/./g_cluster_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_confrms '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_confrms_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_confrms /usr/src/tmp/gromacs-buildroot/usr/bin/./g_confrms_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_covar '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_covar_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_covar /usr/src/tmp/gromacs-buildroot/usr/bin/./g_covar_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_current '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_current_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_current /usr/src/tmp/gromacs-buildroot/usr/bin/./g_current_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_density '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_density_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_density /usr/src/tmp/gromacs-buildroot/usr/bin/./g_density_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_densmap '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_densmap_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_densmap /usr/src/tmp/gromacs-buildroot/usr/bin/./g_densmap_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_dih '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_dih_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_dih /usr/src/tmp/gromacs-buildroot/usr/bin/./g_dih_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_dielectric '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_dielectric_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_dielectric /usr/src/tmp/gromacs-buildroot/usr/bin/./g_dielectric_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_helixorient '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_helixorient_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_helixorient /usr/src/tmp/gromacs-buildroot/usr/bin/./g_helixorient_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_principal '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_principal_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_principal /usr/src/tmp/gromacs-buildroot/usr/bin/./g_principal_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_dipoles '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_dipoles_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_dipoles /usr/src/tmp/gromacs-buildroot/usr/bin/./g_dipoles_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_disre '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_disre_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_disre /usr/src/tmp/gromacs-buildroot/usr/bin/./g_disre_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_dist '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_dist_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_dist /usr/src/tmp/gromacs-buildroot/usr/bin/./g_dist_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_dyndom '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_dyndom_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_dyndom /usr/src/tmp/gromacs-buildroot/usr/bin/./g_dyndom_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_enemat '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_enemat_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_enemat /usr/src/tmp/gromacs-buildroot/usr/bin/./g_enemat_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_energy '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_energy_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_energy /usr/src/tmp/gromacs-buildroot/usr/bin/./g_energy_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_lie '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_lie_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_lie /usr/src/tmp/gromacs-buildroot/usr/bin/./g_lie_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_filter '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_filter_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_filter /usr/src/tmp/gromacs-buildroot/usr/bin/./g_filter_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_gyrate '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_gyrate_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_gyrate /usr/src/tmp/gromacs-buildroot/usr/bin/./g_gyrate_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_h2order '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_h2order_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_h2order /usr/src/tmp/gromacs-buildroot/usr/bin/./g_h2order_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_hbond '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_hbond_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_hbond /usr/src/tmp/gromacs-buildroot/usr/bin/./g_hbond_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_helix '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_helix_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_helix /usr/src/tmp/gromacs-buildroot/usr/bin/./g_helix_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_mindist '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_mindist_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_mindist /usr/src/tmp/gromacs-buildroot/usr/bin/./g_mindist_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_msd '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_msd_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_msd /usr/src/tmp/gromacs-buildroot/usr/bin/./g_msd_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_morph '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_morph_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_morph /usr/src/tmp/gromacs-buildroot/usr/bin/./g_morph_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_nmeig '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_nmeig_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_nmeig /usr/src/tmp/gromacs-buildroot/usr/bin/./g_nmeig_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_nmens '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_nmens_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_nmens /usr/src/tmp/gromacs-buildroot/usr/bin/./g_nmens_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_order '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_order_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_order /usr/src/tmp/gromacs-buildroot/usr/bin/./g_order_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_polystat '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_polystat_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_polystat /usr/src/tmp/gromacs-buildroot/usr/bin/./g_polystat_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_potential '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_potential_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_potential /usr/src/tmp/gromacs-buildroot/usr/bin/./g_potential_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_rama '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_rama_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_rama /usr/src/tmp/gromacs-buildroot/usr/bin/./g_rama_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_rdf '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_rdf_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_rdf /usr/src/tmp/gromacs-buildroot/usr/bin/./g_rdf_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_rms '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_rms_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_rms /usr/src/tmp/gromacs-buildroot/usr/bin/./g_rms_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_rmsdist '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_rmsdist_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_rmsdist /usr/src/tmp/gromacs-buildroot/usr/bin/./g_rmsdist_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_rmsf '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_rmsf_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_rmsf /usr/src/tmp/gromacs-buildroot/usr/bin/./g_rmsf_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_rotacf '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_rotacf_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_rotacf /usr/src/tmp/gromacs-buildroot/usr/bin/./g_rotacf_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_saltbr '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_saltbr_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_saltbr /usr/src/tmp/gromacs-buildroot/usr/bin/./g_saltbr_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_sas '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_sas_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_sas /usr/src/tmp/gromacs-buildroot/usr/bin/./g_sas_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_sgangle '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_sgangle_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_sgangle /usr/src/tmp/gromacs-buildroot/usr/bin/./g_sgangle_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_sham '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_sham_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_sham /usr/src/tmp/gromacs-buildroot/usr/bin/./g_sham_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_sorient '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_sorient_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_sorient /usr/src/tmp/gromacs-buildroot/usr/bin/./g_sorient_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_spol '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_spol_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_spol /usr/src/tmp/gromacs-buildroot/usr/bin/./g_spol_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_sdf '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_sdf_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_sdf /usr/src/tmp/gromacs-buildroot/usr/bin/./g_sdf_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_spatial '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_spatial_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_spatial /usr/src/tmp/gromacs-buildroot/usr/bin/./g_spatial_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_tcaf '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_tcaf_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_tcaf /usr/src/tmp/gromacs-buildroot/usr/bin/./g_tcaf_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_traj '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_traj_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_traj /usr/src/tmp/gromacs-buildroot/usr/bin/./g_traj_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_vanhove '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_vanhove_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_vanhove /usr/src/tmp/gromacs-buildroot/usr/bin/./g_vanhove_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_velacc '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_velacc_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_velacc /usr/src/tmp/gromacs-buildroot/usr/bin/./g_velacc_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_clustsize '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_clustsize_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_clustsize /usr/src/tmp/gromacs-buildroot/usr/bin/./g_clustsize_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_mdmat '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_mdmat_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_mdmat /usr/src/tmp/gromacs-buildroot/usr/bin/./g_mdmat_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_wham '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_wham_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_wham /usr/src/tmp/gromacs-buildroot/usr/bin/./g_wham_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p g_kinetics '/usr/src/tmp/gromacs-buildroot/usr/bin/./g_kinetics_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/g_kinetics /usr/src/tmp/gromacs-buildroot/usr/bin/./g_kinetics_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p sigeps '/usr/src/tmp/gromacs-buildroot/usr/bin/./sigeps_mpi_d' libtool: install: warning: `libgmxana_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/gmxlib/.libs/libgmx_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/mdlib/.libs/libmd_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/sigeps /usr/src/tmp/gromacs-buildroot/usr/bin/./sigeps_mpi_d make install-exec-hook make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' libname="libgmxana_mpi_d"; \ nompi="`echo $libname | sed -e 's,_mpi,,'`"; \ libdir="/usr/lib64"; \ if echo $libname | grep mpi >/dev/null ; then \ (cd $libdir && test -e $libname.a -a ! -e $nompi.a && ln -s $libname.a $nompi.a ; exit 0); \ (cd $libdir && test -e $libname.so -a ! -e $nompi.so && ln -s $libname.so $nompi.so ; exit 0); \ fi; make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/tools' Making install in ngmx make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx' /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/bin' /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p ngmx '/usr/src/tmp/gromacs-buildroot/usr/bin/./ngmx_mpi_d' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/ngmx /usr/src/tmp/gromacs-buildroot/usr/bin/./ngmx_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p xrama '/usr/src/tmp/gromacs-buildroot/usr/bin/./xrama_mpi_d' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/xrama /usr/src/tmp/gromacs-buildroot/usr/bin/./xrama_mpi_d /bin/sh ../../libtool --mode=install /usr/libexec/rpm-build/install -p highway '/usr/src/tmp/gromacs-buildroot/usr/bin/./highway_mpi_d' libtool: install: warning: `../mdlib/libmd_mpi_d.la' has not been installed in `/usr/lib64' libtool: install: warning: `../gmxlib/libgmx_mpi_d.la' has not been installed in `/usr/lib64' /usr/libexec/rpm-build/install -p .libs/highway /usr/src/tmp/gromacs-buildroot/usr/bin/./highway_mpi_d make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx' make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/ngmx' Making install in contrib make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/contrib' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/contrib' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/contrib' make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src/contrib' make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src' make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src' make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/src' Making install in admin make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/admin' make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/admin' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/admin' make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/admin' Making install in scripts make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/scripts' make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/scripts' /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/bin' /usr/libexec/rpm-build/install -p GMXRC GMXRC.csh GMXRC.bash GMXRC.zsh '/usr/src/tmp/gromacs-buildroot/usr/bin' /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/bin' /usr/libexec/rpm-build/install -p ../../scripts/completion.csh ../../scripts/completion.bash ../../scripts/completion.zsh ../../scripts/demux.pl ../../scripts/xplor2gmx.pl '/usr/src/tmp/gromacs-buildroot/usr/bin' make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/scripts' make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/scripts' Making install in share make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share' Making install in top make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/top' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/top' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/top' /usr/libexec/rpm-build/install -p -m 644 ../../../share/top/ffgmx.itp ../../../share/top/ffgmxnb.itp ../../../share/top/ffgmxbon.itp ../../../share/top/ffgmx.atp ../../../share/top/ffgmx.hdb ../../../share/top/ffgmx.rtp ../../../share/top/ffgmx-c.tdb ../../../share/top/ffgmx-n.tdb ../../../share/top/ffgmx2.itp ../../../share/top/ffgmx2nb.itp ../../../share/top/ffgmx2bon.itp ../../../share/top/ffgmx2.atp ../../../share/top/ffgmx2.hdb ../../../share/top/ffgmx2.rtp ../../../share/top/ffgmx2-c.tdb ../../../share/top/ffgmx2-n.tdb ../../../share/top/ffG43a1.itp ../../../share/top/ffG43a1nb.itp ../../../share/top/ffG43a1bon.itp ../../../share/top/ffG43a1.atp ../../../share/top/ffG43a1.hdb ../../../share/top/ffG43a1.rtp ../../../share/top/ffG43a1-c.tdb ../../../share/top/ffG43a1-n.tdb ../../../share/top/ffG43a2.itp ../../../share/top/ffG43a2nb.itp ../../../share/top/ffG43a2bon.itp ../../../share/top/ffG43a2.atp ../../../share/top/ffG43a2.hdb ../../../share/top/ffG43a2.rtp ../../../share/top/ffG43a2-c.tdb ../../../share/top/ffG43a2-n.tdb ../../../share/top/ffgmx.ddb ../../../share/top/ffgmx2.ddb ../../../share/top/ffG43a1.ddb ../../../share/top/ffG43a2.ddb ../../../share/top/ffG45a3-c.tdb ../../../share/top/ffG45a3.atp ../../../share/top/ffG45a3.hdb ../../../share/top/ffG45a3.rtp '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/top' /usr/libexec/rpm-build/install -p -m 644 ../../../share/top/ffG45a3nb.itp ../../../share/top/ffG45a3-n.tdb ../../../share/top/ffG45a3.ddb ../../../share/top/ffG45a3.itp ../../../share/top/ffG45a3bon.itp ../../../share/top/ffG53a5-c.tdb ../../../share/top/ffG53a5.atp ../../../share/top/ffG53a5.hdb ../../../share/top/ffG53a5.rtp ../../../share/top/ffG53a5nb.itp ../../../share/top/ffG53a5-n.tdb ../../../share/top/ffG53a5.ddb ../../../share/top/ffG53a5.itp ../../../share/top/ffG53a5bon.itp ../../../share/top/ffG53a5.n2t ../../../share/top/ffG53a6-c.tdb ../../../share/top/ffG53a6.atp ../../../share/top/ffG53a6.hdb ../../../share/top/ffG53a6.rtp ../../../share/top/ffG53a6nb.itp ../../../share/top/ffG53a6-n.tdb ../../../share/top/ffG53a6.ddb ../../../share/top/ffG53a6.itp ../../../share/top/ffG53a6bon.itp ../../../share/top/ffoplsaa.atp ../../../share/top/ffoplsaa.itp ../../../share/top/ffoplsaabon.itp ../../../share/top/ffoplsaanb.itp ../../../share/top/ffoplsaa.hdb ../../../share/top/ffoplsaa-n.tdb ../../../share/top/ffoplsaa-c.tdb ../../../share/top/ffoplsaa.rtp ../../../share/top/ffoplsaa.ddb ../../../share/top/ffoplsaa.n2t ../../../share/top/ffencads-c.tdb ../../../share/top/ffencads.itp ../../../share/top/ffencadv-c.tdb ../../../share/top/ffencadv.itp ../../../share/top/ffencads-n.tdb ../../../share/top/ffencads.rtp '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/top' /usr/libexec/rpm-build/install -p -m 644 ../../../share/top/ffencadv-n.tdb ../../../share/top/ffencadv.rtp ../../../share/top/ffencads.atp ../../../share/top/ffencadsbon.itp ../../../share/top/ffencadv.atp ../../../share/top/ffencadvbon.itp ../../../share/top/ffencads.hdb ../../../share/top/ffencadsnb.itp ../../../share/top/ffencadv.hdb ../../../share/top/ffencadvnb.itp ../../../share/top/1mlg.itp ../../../share/top/2mlg.itp ../../../share/top/benzamide.itp ../../../share/top/bondadd.itp ../../../share/top/buck.itp ../../../share/top/decane.itp ../../../share/top/dlg.itp ../../../share/top/dmso.itp ../../../share/top/fa.itp ../../../share/top/ff_dum.itp ../../../share/top/flexspc.itp ../../../share/top/flexspce.itp ../../../share/top/flexwat-ferguson.itp ../../../share/top/h2p4o13.itp ../../../share/top/h2p8o25.itp ../../../share/top/h2po4.itp ../../../share/top/ions.itp ../../../share/top/methanol.itp ../../../share/top/spc.itp ../../../share/top/spce.itp ../../../share/top/tfe.itp ../../../share/top/tip3p.itp ../../../share/top/tip4p.itp ../../../share/top/urea.itp ../../../share/top/dgsolv.dat ../../../share/top/electroneg.dat ../../../share/top/dec50.gro ../../../share/top/dmso.gro ../../../share/top/spc216.gro ../../../share/top/tip4p.gro '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/top' /usr/libexec/rpm-build/install -p -m 644 ../../../share/top/urea+h2o.gro ../../../share/top/f3c.itp ../../../share/top/aminoacids.dat ../../../share/top/atommass.dat ../../../share/top/bromacs.dat ../../../share/top/ca-shift.dat ../../../share/top/cb-shift.dat ../../../share/top/co-shift.dat ../../../share/top/edissoc.dat ../../../share/top/FF.dat ../../../share/top/gurgle.dat ../../../share/top/ha-shift.dat ../../../share/top/links.dat ../../../share/top/phbres.dat ../../../share/top/random.dat ../../../share/top/refi_aa.dat ../../../share/top/specbond.dat ../../../share/top/surface.dat ../../../share/top/vdwradii.dat ../../../share/top/xlateat.dat ../../../share/top/highway.dat ../../../share/top/export.dlg ../../../share/top/bonds.dlg ../../../share/top/ss.map ../../../share/top/ps.m2p ../../../share/top/table6-10.xvg ../../../share/top/table6-11.xvg ../../../share/top/table6-12.xvg ../../../share/top/table6-8.xvg ../../../share/top/table6-9.xvg ../../../share/top/atom_nom.tbl ../../../share/top/gromacs.dtd ../../../share/top/tip5p.gro ../../../share/top/tip5p.itp ../../../share/top/sw.itp ../../../share/top/elements.dat '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/top' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/top' make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/top' Making install in tutor make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor' Making install in nmr1 make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor/nmr1' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor/nmr1' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/nmr1' /usr/libexec/rpm-build/install -p -m 644 ../../../../share/tutor/nmr1/conf.gro ../../../../share/tutor/nmr1/grompp.mdp ../../../../share/tutor/nmr1/pep.pdb ../../../../share/tutor/nmr1/topol.top '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/nmr1' make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor/nmr1' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor/nmr1' Making install in nmr2 make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor/nmr2' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor/nmr2' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/nmr2' /usr/libexec/rpm-build/install -p -m 644 ../../../../share/tutor/nmr2/conf.gro ../../../../share/tutor/nmr2/genconf.gcp ../../../../share/tutor/nmr2/grompp.mdp ../../../../share/tutor/nmr2/pep.pdb ../../../../share/tutor/nmr2/topol.top '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/nmr2' make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor/nmr2' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor/nmr2' Making install in speptide make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor/speptide' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor/speptide' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/speptide' /usr/libexec/rpm-build/install -p -m 644 ../../../../share/tutor/speptide/em.mdp ../../../../share/tutor/speptide/full.mdp ../../../../share/tutor/speptide/pr.mdp ../../../../share/tutor/speptide/speptide.pdb '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/speptide' make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor/speptide' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor/speptide' Making install in water make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor/water' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor/water' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/water' /usr/libexec/rpm-build/install -p -m 644 ../../../../share/tutor/water/index.ndx ../../../../share/tutor/water/conf.gro ../../../../share/tutor/water/spc216.pdb ../../../../share/tutor/water/grompp.mdp ../../../../share/tutor/water/topol.top '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/water' make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor/water' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor/water' Making install in gmxdemo make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor/gmxdemo' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor/gmxdemo' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/gmxdemo' /usr/libexec/rpm-build/install -p -m 644 ../../../../share/tutor/gmxdemo/cpeptide.pdb '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/gmxdemo' /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/gmxdemo' /usr/libexec/rpm-build/install -p ../../../../share/tutor/gmxdemo/demo '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/gmxdemo/./demo_mpi_d' make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor/gmxdemo' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor/gmxdemo' Making install in methanol make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor/methanol' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor/methanol' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/methanol' /usr/libexec/rpm-build/install -p -m 644 ../../../../share/tutor/methanol/index.ndx ../../../../share/tutor/methanol/conf.gro ../../../../share/tutor/methanol/methanol.pdb ../../../../share/tutor/methanol/grompp.mdp ../../../../share/tutor/methanol/topol.top ../../../../share/tutor/methanol/methanol.itp '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/methanol' make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor/methanol' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor/methanol' Making install in mixed make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor/mixed' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor/mixed' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/mixed' /usr/libexec/rpm-build/install -p -m 644 ../../../../share/tutor/mixed/index.ndx ../../../../share/tutor/mixed/conf.gro ../../../../share/tutor/mixed/mixed.pdb ../../../../share/tutor/mixed/grompp.mdp ../../../../share/tutor/mixed/topol.top '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/tutor/mixed' make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor/mixed' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor/mixed' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor' make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/tutor' Making install in template make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/template' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/template' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/template' /usr/libexec/rpm-build/install -p -m 644 ../../../share/template/template.c ../../../share/template/README Makefile.x86_64-alt-linux-gnu_double '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/template' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/template' make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/template' Making install in html make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/html' Making install in . make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/html' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/html' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html' /usr/libexec/rpm-build/install -p -m 644 ../../../share/html/online.html ../../../share/html/gmxfaq.html '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html' make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/html' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/html' Making install in images make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/html/images' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/html/images' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html/images' /usr/libexec/rpm-build/install -p -m 644 ../../../../share/html/images/features.gif ../../../../share/html/images/flow_leftrightup.gif ../../../../share/html/images/flow_vrule.gif ../../../../share/html/images/flow_down.gif ../../../../share/html/images/flow_leftup.gif ../../../../share/html/images/links.gif ../../../../share/html/images/articles.gif ../../../../share/html/images/flow_downleft.gif ../../../../share/html/images/flow_right+left.gif ../../../../share/html/images/mail.gif ../../../../share/html/images/bench.gif ../../../../share/html/images/flow_hline.gif ../../../../share/html/images/flow_right.gif ../../../../share/html/images/manual.gif ../../../../share/html/images/charts_down.gif ../../../../share/html/images/flow_left.gif ../../../../share/html/images/flow_rightleftdown.gif ../../../../share/html/images/gmxlogo_small.jpg ../../../../share/html/images/charts_up.gif ../../../../share/html/images/flow_leftright.gif ../../../../share/html/images/flow_uprightleft.gif ../../../../share/html/images/software.gif ../../../../share/html/images/faq.gif ../../../../share/html/images/flow_leftrightdown.gif ../../../../share/html/images/flow_vline.gif ../../../../share/html/images/topologies.gif ../../../../share/html/images/plotje.gif ../../../../share/html/images/xvgr.gif ../../../../share/html/images/1ctf-0.jpg ../../../../share/html/images/1ctf-0.2.jpg ../../../../share/html/images/1ctf-0.5.jpg ../../../../share/html/images/1ctf-1.jpg ../../../../share/html/images/1ctf-4.jpg ../../../../share/html/images/1ctf-10.jpg '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html/images' make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/html/images' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/html/images' Making install in online make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/html/online' make[4]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/html/online' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html/online' /usr/libexec/rpm-build/install -p -m 644 ../../../../share/html/online/cpt.html ../../../../share/html/online/dat.html ../../../../share/html/online/g_disre.html ../../../../share/html/online/g_sorient.html ../../../../share/html/online/ndx.html ../../../../share/html/online/dlg.html ../../../../share/html/online/g_dist.html ../../../../share/html/online/g_tcaf.html ../../../../share/html/online/ngmx.html ../../../../share/html/online/do_dssp.html ../../../../share/html/online/g_dyndom.html ../../../../share/html/online/g_traj.html ../../../../share/html/online/edi.html ../../../../share/html/online/g_enemat.html ../../../../share/html/online/g_velacc.html ../../../../share/html/online/options.html ../../../../share/html/online/editconf.html ../../../../share/html/online/g_energy.html ../../../../share/html/online/genbox.html ../../../../share/html/online/out.html ../../../../share/html/online/edo.html ../../../../share/html/online/g_gyrate.html ../../../../share/html/online/genconf.html ../../../../share/html/online/pdb.html ../../../../share/html/online/edr.html ../../../../share/html/online/g_h2order.html ../../../../share/html/online/genion.html ../../../../share/html/online/pdb2gmx.html ../../../../share/html/online/ene.html ../../../../share/html/online/g_hbond.html ../../../../share/html/online/genpr.html ../../../../share/html/online/protonate.html ../../../../share/html/online/eneconv.html ../../../../share/html/online/g_helix.html ../../../../share/html/online/getting_started.html ../../../../share/html/online/rtp.html ../../../../share/html/online/eps.html ../../../../share/html/online/g_lie.html ../../../../share/html/online/gmxcheck.html ../../../../share/html/online/tex.html '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html/online' /usr/libexec/rpm-build/install -p -m 644 ../../../../share/html/online/files.html ../../../../share/html/online/g_mdmat.html ../../../../share/html/online/gmxdump.html ../../../../share/html/online/top.html ../../../../share/html/online/flow.html ../../../../share/html/online/g_mindist.html ../../../../share/html/online/gro.html ../../../../share/html/online/tpa.html ../../../../share/html/online/g87.html ../../../../share/html/online/g_morph.html ../../../../share/html/online/grompp.html ../../../../share/html/online/tpb.html ../../../../share/html/online/g96.html ../../../../share/html/online/g_msd.html ../../../../share/html/online/hat.html ../../../../share/html/online/tpbconv.html ../../../../share/html/online/g_anaeig.html ../../../../share/html/online/g_nmeig.html ../../../../share/html/online/highway.html ../../../../share/html/online/tpr.html ../../../../share/html/online/g_analyze.html ../../../../share/html/online/g_nmens.html ../../../../share/html/online/include_bot.html ../../../../share/html/online/trj.html ../../../../share/html/online/g_angle.html ../../../../share/html/online/g_order.html ../../../../share/html/online/include_top.html ../../../../share/html/online/trjcat.html ../../../../share/html/online/g_bond.html ../../../../share/html/online/g_potential.html ../../../../share/html/online/itp.html ../../../../share/html/online/trjconv.html ../../../../share/html/online/g_bundle.html ../../../../share/html/online/g_rama.html ../../../../share/html/online/log.html ../../../../share/html/online/trjorder.html ../../../../share/html/online/g_chi.html ../../../../share/html/online/g_rdf.html ../../../../share/html/online/m2p.html ../../../../share/html/online/trr.html '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html/online' /usr/libexec/rpm-build/install -p -m 644 ../../../../share/html/online/g_cluster.html ../../../../share/html/online/g_rms.html ../../../../share/html/online/make_ndx.html ../../../../share/html/online/wheel.html ../../../../share/html/online/g_confrms.html ../../../../share/html/online/g_rmsdist.html ../../../../share/html/online/map.html ../../../../share/html/online/x2top.html ../../../../share/html/online/g_covar.html ../../../../share/html/online/g_rmsf.html ../../../../share/html/online/mdp.html ../../../../share/html/online/xpm.html ../../../../share/html/online/g_density.html ../../../../share/html/online/g_rotacf.html ../../../../share/html/online/mdp_opt.html ../../../../share/html/online/xpm2ps.html ../../../../share/html/online/g_dielectric.html ../../../../share/html/online/g_saltbr.html ../../../../share/html/online/mdrun.html ../../../../share/html/online/xrama.html ../../../../share/html/online/g_dih.html ../../../../share/html/online/g_sas.html ../../../../share/html/online/mk_angndx.html ../../../../share/html/online/xtc.html ../../../../share/html/online/g_dipoles.html ../../../../share/html/online/g_sgangle.html ../../../../share/html/online/mtx.html ../../../../share/html/online/xvg.html ../../../../share/html/online/g_densmap.html ../../../../share/html/online/g_sham.html ../../../../share/html/online/make_edi.html ../../../../share/html/online/style.css ../../../../share/html/online/water.html ../../../../share/html/online/gmxdemo.html ../../../../share/html/online/speptide.html ../../../../share/html/online/yourown.html ../../../../share/html/online/methanol.html ../../../../share/html/online/mixed.html ../../../../share/html/online/protunf.html '/usr/src/tmp/gromacs-buildroot/usr/share/gromacs/html/online' make[4]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/html/online' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/html/online' make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share/html' make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share' make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share' make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/share' Making install in man make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/man' Making install in man1 make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/man/man1' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/man/man1' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/anadock.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/anadock_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/do_dssp.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/do_dssp_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/editconf.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/editconf_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/eneconv.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/eneconv_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_anaeig.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_anaeig_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_analyze.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_analyze_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_angle.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_angle_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_bond.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_bond_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_bundle.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_bundle_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_chi.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_chi_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_cluster.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_cluster_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_clustsize.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_clustsize_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_confrms.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_confrms_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_covar.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_covar_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_current.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_current_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_density.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_density_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_densmap.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_densmap_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_dielectric.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_dielectric_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_dih.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_dih_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_dipoles.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_dipoles_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_disre.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_disre_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_dist.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_dist_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_dyndom.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_dyndom_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_enemat.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_enemat_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_energy.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_energy_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_filter.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_filter_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_gyrate.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_gyrate_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_h2order.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_h2order_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_hbond.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_hbond_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_helix.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_helix_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_helixorient.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_helixorient_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_kinetics.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_kinetics_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_lie.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_lie_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_mdmat.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_mdmat_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_mindist.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_mindist_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_morph.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_morph_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_msd.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_msd_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_nmeig.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_nmeig_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_nmens.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_nmens_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_nmtraj.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_nmtraj_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_order.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_order_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_polystat.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_polystat_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_potential.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_potential_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_principal.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_principal_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_rama.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_rama_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_rdf.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_rdf_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_rms.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_rms_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_rmsdist.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_rmsdist_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_rmsf.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_rmsf_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_rotacf.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_rotacf_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_saltbr.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_saltbr_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_sas.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_sas_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_sdf.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_sdf_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_sgangle.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_sgangle_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_sham.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_sham_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_sorient.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_sorient_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_spatial.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_spatial_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_spol.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_spol_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_tcaf.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_tcaf_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_traj.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_traj_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_vanhove.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_vanhove_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_velacc.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_velacc_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/g_wham.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_wham_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/gen_table.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/gen_table_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/genbox.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/genbox_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/genconf.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/genconf_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/genion.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/genion_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/genrestr.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/genrestr_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/gmxcheck.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/gmxcheck_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/gmxdump.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/gmxdump_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/grompp.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/grompp_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/highway.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/highway_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/make_edi.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/make_edi_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/make_ndx.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/make_ndx_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/mdrun.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/mdrun_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/mk_angndx.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/mk_angndx_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/ngmx.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/ngmx_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/pdb2gmx.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/pdb2gmx_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/protonate.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/protonate_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/sigeps.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/sigeps_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/tpbconv.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/tpbconv_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/trjcat.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/trjcat_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/trjconv.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/trjconv_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/trjorder.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/trjorder_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/wheel.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/wheel_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/x2top.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/x2top_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/xpm2ps.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/xpm2ps_mpi_d.1' /usr/libexec/rpm-build/install -p -m 644 '../../../man/man1/xrama.1' '/usr/src/tmp/gromacs-buildroot/usr/share/man/man1/xrama_mpi_d.1' make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/man/man1' make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/man/man1' make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/man' make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/man' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/man' make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/man' make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double/man' make[1]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double' make[2]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double' make install-exec-hook make[3]: Entering directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double' GROMACS is installed under /usr. Make sure to update your PATH and MANPATH to find the programs and unix manual pages, and possibly LD_LIBRARY_PATH or /etc/ld.so.conf if you are using dynamic libraries. Please run "make tests" now to verify your installation. If you want links to the executables in /usr/local/bin, you can issue "make links" now. make[3]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double' make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double' make[1]: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double' make: Leaving directory '/usr/src/RPM/BUILD/gromacs-4.0.7/mpi-double' + popd ~/RPM/BUILD/gromacs-4.0.7 + for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama + mv /usr/src/tmp/gromacs-buildroot/usr/bin/anadock /usr/src/tmp/gromacs-buildroot/usr/bin/g_anadock + mv /usr/src/tmp/gromacs-buildroot/usr/bin/anadock_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_anadock_d + for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama + mv /usr/src/tmp/gromacs-buildroot/usr/bin/do_dssp /usr/src/tmp/gromacs-buildroot/usr/bin/g_do_dssp + mv /usr/src/tmp/gromacs-buildroot/usr/bin/do_dssp_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_do_dssp_d + for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama + mv /usr/src/tmp/gromacs-buildroot/usr/bin/editconf /usr/src/tmp/gromacs-buildroot/usr/bin/g_editconf + mv /usr/src/tmp/gromacs-buildroot/usr/bin/editconf_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_editconf_d + for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama + mv /usr/src/tmp/gromacs-buildroot/usr/bin/eneconv /usr/src/tmp/gromacs-buildroot/usr/bin/g_eneconv + mv /usr/src/tmp/gromacs-buildroot/usr/bin/eneconv_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_eneconv_d + for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama + mv /usr/src/tmp/gromacs-buildroot/usr/bin/genbox /usr/src/tmp/gromacs-buildroot/usr/bin/g_genbox + mv /usr/src/tmp/gromacs-buildroot/usr/bin/genbox_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_genbox_d + for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama + mv /usr/src/tmp/gromacs-buildroot/usr/bin/genconf /usr/src/tmp/gromacs-buildroot/usr/bin/g_genconf + mv /usr/src/tmp/gromacs-buildroot/usr/bin/genconf_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_genconf_d + for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama + mv /usr/src/tmp/gromacs-buildroot/usr/bin/genion /usr/src/tmp/gromacs-buildroot/usr/bin/g_genion + mv /usr/src/tmp/gromacs-buildroot/usr/bin/genion_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_genion_d + for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama + mv /usr/src/tmp/gromacs-buildroot/usr/bin/genrestr /usr/src/tmp/gromacs-buildroot/usr/bin/g_genrestr + mv /usr/src/tmp/gromacs-buildroot/usr/bin/genrestr_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_genrestr_d + for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama + mv /usr/src/tmp/gromacs-buildroot/usr/bin/gmxcheck /usr/src/tmp/gromacs-buildroot/usr/bin/g_gmxcheck + mv /usr/src/tmp/gromacs-buildroot/usr/bin/gmxcheck_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_gmxcheck_d + for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama + mv /usr/src/tmp/gromacs-buildroot/usr/bin/gmxdump /usr/src/tmp/gromacs-buildroot/usr/bin/g_gmxdump + mv /usr/src/tmp/gromacs-buildroot/usr/bin/gmxdump_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_gmxdump_d + for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama + mv /usr/src/tmp/gromacs-buildroot/usr/bin/grompp /usr/src/tmp/gromacs-buildroot/usr/bin/g_grompp + mv /usr/src/tmp/gromacs-buildroot/usr/bin/grompp_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_grompp_d + for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama + mv /usr/src/tmp/gromacs-buildroot/usr/bin/highway /usr/src/tmp/gromacs-buildroot/usr/bin/g_highway + mv /usr/src/tmp/gromacs-buildroot/usr/bin/highway_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_highway_d + for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama + mv /usr/src/tmp/gromacs-buildroot/usr/bin/luck /usr/src/tmp/gromacs-buildroot/usr/bin/g_luck + mv /usr/src/tmp/gromacs-buildroot/usr/bin/luck_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_luck_d + for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama + mv /usr/src/tmp/gromacs-buildroot/usr/bin/make_edi /usr/src/tmp/gromacs-buildroot/usr/bin/g_make_edi + mv /usr/src/tmp/gromacs-buildroot/usr/bin/make_edi_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_make_edi_d + for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama + mv /usr/src/tmp/gromacs-buildroot/usr/bin/make_ndx /usr/src/tmp/gromacs-buildroot/usr/bin/g_make_ndx + mv /usr/src/tmp/gromacs-buildroot/usr/bin/make_ndx_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_make_ndx_d + for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama + mv /usr/src/tmp/gromacs-buildroot/usr/bin/mdrun /usr/src/tmp/gromacs-buildroot/usr/bin/g_mdrun + mv /usr/src/tmp/gromacs-buildroot/usr/bin/mdrun_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_mdrun_d + for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama + mv /usr/src/tmp/gromacs-buildroot/usr/bin/mk_angndx /usr/src/tmp/gromacs-buildroot/usr/bin/g_mk_angndx + mv /usr/src/tmp/gromacs-buildroot/usr/bin/mk_angndx_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_mk_angndx_d + for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama + mv /usr/src/tmp/gromacs-buildroot/usr/bin/ngmx /usr/src/tmp/gromacs-buildroot/usr/bin/g_ngmx + mv /usr/src/tmp/gromacs-buildroot/usr/bin/ngmx_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_ngmx_d + for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama + mv /usr/src/tmp/gromacs-buildroot/usr/bin/pdb2gmx /usr/src/tmp/gromacs-buildroot/usr/bin/g_pdb2gmx + mv /usr/src/tmp/gromacs-buildroot/usr/bin/pdb2gmx_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_pdb2gmx_d + for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama + mv /usr/src/tmp/gromacs-buildroot/usr/bin/protonate /usr/src/tmp/gromacs-buildroot/usr/bin/g_protonate + mv /usr/src/tmp/gromacs-buildroot/usr/bin/protonate_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_protonate_d + for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama + mv /usr/src/tmp/gromacs-buildroot/usr/bin/sigeps /usr/src/tmp/gromacs-buildroot/usr/bin/g_sigeps + mv /usr/src/tmp/gromacs-buildroot/usr/bin/sigeps_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_sigeps_d + for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama + mv /usr/src/tmp/gromacs-buildroot/usr/bin/tpbconv /usr/src/tmp/gromacs-buildroot/usr/bin/g_tpbconv + mv /usr/src/tmp/gromacs-buildroot/usr/bin/tpbconv_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_tpbconv_d + for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama + mv /usr/src/tmp/gromacs-buildroot/usr/bin/trjcat /usr/src/tmp/gromacs-buildroot/usr/bin/g_trjcat + mv /usr/src/tmp/gromacs-buildroot/usr/bin/trjcat_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_trjcat_d + for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama + mv /usr/src/tmp/gromacs-buildroot/usr/bin/trjconv /usr/src/tmp/gromacs-buildroot/usr/bin/g_trjconv + mv /usr/src/tmp/gromacs-buildroot/usr/bin/trjconv_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_trjconv_d + for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama + mv /usr/src/tmp/gromacs-buildroot/usr/bin/trjorder /usr/src/tmp/gromacs-buildroot/usr/bin/g_trjorder + mv /usr/src/tmp/gromacs-buildroot/usr/bin/trjorder_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_trjorder_d + for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama + mv /usr/src/tmp/gromacs-buildroot/usr/bin/wheel /usr/src/tmp/gromacs-buildroot/usr/bin/g_wheel + mv /usr/src/tmp/gromacs-buildroot/usr/bin/wheel_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_wheel_d + for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama + mv /usr/src/tmp/gromacs-buildroot/usr/bin/x2top /usr/src/tmp/gromacs-buildroot/usr/bin/g_x2top + mv /usr/src/tmp/gromacs-buildroot/usr/bin/x2top_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_x2top_d + for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama + mv /usr/src/tmp/gromacs-buildroot/usr/bin/xpm2ps /usr/src/tmp/gromacs-buildroot/usr/bin/g_xpm2ps + mv /usr/src/tmp/gromacs-buildroot/usr/bin/xpm2ps_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_xpm2ps_d + for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway luck make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama + mv /usr/src/tmp/gromacs-buildroot/usr/bin/xrama /usr/src/tmp/gromacs-buildroot/usr/bin/g_xrama + mv /usr/src/tmp/gromacs-buildroot/usr/bin/xrama_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_xrama_d + for bin in demux.pl xplor2gmx.pl + mv /usr/src/tmp/gromacs-buildroot/usr/bin/demux.pl /usr/src/tmp/gromacs-buildroot/usr/bin/g_demux.pl + for bin in demux.pl xplor2gmx.pl + mv /usr/src/tmp/gromacs-buildroot/usr/bin/xplor2gmx.pl /usr/src/tmp/gromacs-buildroot/usr/bin/g_xplor2gmx.pl + for mpibin in mdrun + mv /usr/src/tmp/gromacs-buildroot/usr/bin/mdrun_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/g_mdrun_mpi + mv /usr/src/tmp/gromacs-buildroot/usr/bin/mdrun_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_mdrun_mpi_d + for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama + mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/anadock.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_anadock.1 + mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/anadock_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_anadock_d.1 + for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama + mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/do_dssp.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_do_dssp.1 + mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/do_dssp_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_do_dssp_d.1 + for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama + mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/editconf.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_editconf.1 + mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/editconf_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_editconf_d.1 + for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama + mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/eneconv.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_eneconv.1 + mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/eneconv_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_eneconv_d.1 + for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama + mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/genbox.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_genbox.1 + mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/genbox_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_genbox_d.1 + for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama + mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/genconf.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_genconf.1 + mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/genconf_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_genconf_d.1 + for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama + mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/genion.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_genion.1 + mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/genion_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_genion_d.1 + for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama + mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/genrestr.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_genrestr.1 + mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/genrestr_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_genrestr_d.1 + for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama + mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/gmxcheck.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_gmxcheck.1 + mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/gmxcheck_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_gmxcheck_d.1 + for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama + mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/gmxdump.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_gmxdump.1 + mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/gmxdump_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_gmxdump_d.1 + for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama + mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/grompp.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_grompp.1 + mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/grompp_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_grompp_d.1 + for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama + mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/highway.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_highway.1 + mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/highway_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_highway_d.1 + for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama + mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/make_edi.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_make_edi.1 + mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/make_edi_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_make_edi_d.1 + for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama + mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/make_ndx.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_make_ndx.1 + mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/make_ndx_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_make_ndx_d.1 + for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama + mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/mdrun.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_mdrun.1 + mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/mdrun_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_mdrun_d.1 + for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama + mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/mk_angndx.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_mk_angndx.1 + mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/mk_angndx_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_mk_angndx_d.1 + for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama + mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/ngmx.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_ngmx.1 + mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/ngmx_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_ngmx_d.1 + for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama + mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/pdb2gmx.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_pdb2gmx.1 + mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/pdb2gmx_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_pdb2gmx_d.1 + for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama + mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/protonate.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_protonate.1 + mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/protonate_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_protonate_d.1 + for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama + mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/sigeps.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_sigeps.1 + mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/sigeps_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_sigeps_d.1 + for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama + mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/tpbconv.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_tpbconv.1 + mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/tpbconv_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_tpbconv_d.1 + for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama + mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/trjcat.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_trjcat.1 + mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/trjcat_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_trjcat_d.1 + for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama + mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/trjconv.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_trjconv.1 + mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/trjconv_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_trjconv_d.1 + for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama + mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/trjorder.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_trjorder.1 + mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/trjorder_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_trjorder_d.1 + for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama + mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/wheel.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_wheel.1 + mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/wheel_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_wheel_d.1 + for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama + mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/x2top.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_x2top.1 + mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/x2top_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_x2top_d.1 + for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama + mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/xpm2ps.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_xpm2ps.1 + mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/xpm2ps_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_xpm2ps_d.1 + for bin in anadock do_dssp editconf eneconv genbox genconf genion genrestr gmxcheck gmxdump grompp highway make_edi make_ndx mdrun mk_angndx ngmx pdb2gmx protonate sigeps tpbconv trjcat trjconv trjorder wheel x2top xpm2ps xrama + mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/xrama.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_xrama.1 + mv /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/xrama_d.1 /usr/src/tmp/gromacs-buildroot/usr/share/man/man1/g_xrama_d.1 + chmod a-x /usr/src/tmp/gromacs-buildroot/usr/bin/completion.bash /usr/src/tmp/gromacs-buildroot/usr/bin/completion.csh /usr/src/tmp/gromacs-buildroot/usr/bin/completion.zsh + mkdir -p /usr/src/tmp/gromacs-buildroot/usr/share/zsh/site-functions + mv /usr/src/tmp/gromacs-buildroot/usr/bin/completion.zsh /usr/src/tmp/gromacs-buildroot/usr/share/zsh/site-functions/gromacs + mkdir -p /usr/src/tmp/gromacs-buildroot/etc/bash_completion.d + mv /usr/src/tmp/gromacs-buildroot/usr/bin/completion.bash /usr/src/tmp/gromacs-buildroot/etc/bash_completion.d/gromacs + mv /usr/src/tmp/gromacs-buildroot/usr/bin/completion.csh . + rm -rf /usr/src/tmp/gromacs-buildroot//usr/lib64/libgmx.la /usr/src/tmp/gromacs-buildroot//usr/lib64/libgmx_d.la /usr/src/tmp/gromacs-buildroot//usr/lib64/libgmx_mpi.la /usr/src/tmp/gromacs-buildroot//usr/lib64/libgmx_mpi_d.la /usr/src/tmp/gromacs-buildroot//usr/lib64/libgmxana.la /usr/src/tmp/gromacs-buildroot//usr/lib64/libgmxana_d.la /usr/src/tmp/gromacs-buildroot//usr/lib64/libgmxana_mpi.la /usr/src/tmp/gromacs-buildroot//usr/lib64/libgmxana_mpi_d.la /usr/src/tmp/gromacs-buildroot//usr/lib64/libmd.la /usr/src/tmp/gromacs-buildroot//usr/lib64/libmd_d.la /usr/src/tmp/gromacs-buildroot//usr/lib64/libmd_mpi.la /usr/src/tmp/gromacs-buildroot//usr/lib64/libmd_mpi_d.la + mv mpi-single/src/mdlib/.libs/libmd_mpi.so mpi-single/src/mdlib/.libs/libmd_mpi.so.5 mpi-single/src/mdlib/.libs/libmd_mpi.so.5.0.0 mpi-single/src/mdlib/.libs/libmd_mpi.so.5.0.0T /usr/src/tmp/gromacs-buildroot/usr/lib64/ + mv mpi-double/src/mdlib/.libs/libmd_mpi_d.so mpi-double/src/mdlib/.libs/libmd_mpi_d.so.5 mpi-double/src/mdlib/.libs/libmd_mpi_d.so.5.0.0 mpi-double/src/mdlib/.libs/libmd_mpi_d.so.5.0.0T /usr/src/tmp/gromacs-buildroot/usr/lib64/ + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/GMXRC `/usr/src/tmp/gromacs-buildroot/usr/bin/GMXRC' probably isn't an ELF file. elf_open: Exec format error + : + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/GMXRC.bash `/usr/src/tmp/gromacs-buildroot/usr/bin/GMXRC.bash' probably isn't an ELF file. elf_open: Exec format error + : + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/GMXRC.csh `/usr/src/tmp/gromacs-buildroot/usr/bin/GMXRC.csh' probably isn't an ELF file. elf_open: Exec format error + : + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/GMXRC.zsh `/usr/src/tmp/gromacs-buildroot/usr/bin/GMXRC.zsh' probably isn't an ELF file. elf_open: Exec format error + : + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/anadock_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/anadock_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/anadock_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/anadock_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/anadock_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/anadock_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/do_dssp_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/do_dssp_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/do_dssp_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/do_dssp_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/do_dssp_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/do_dssp_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/editconf_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/editconf_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/editconf_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/editconf_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/editconf_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/editconf_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/eneconv_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/eneconv_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/eneconv_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/eneconv_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/eneconv_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/eneconv_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_anadock /usr/src/tmp/gromacs-buildroot/usr/bin/g_anadock: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_anadock: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_anadock_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_anadock_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_anadock_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_anaeig /usr/src/tmp/gromacs-buildroot/usr/bin/g_anaeig: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_anaeig: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_anaeig_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_anaeig_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_anaeig_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_anaeig_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/g_anaeig_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_anaeig_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_anaeig_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_anaeig_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_anaeig_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_analyze /usr/src/tmp/gromacs-buildroot/usr/bin/g_analyze: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_analyze: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_analyze_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_analyze_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_analyze_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_analyze_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/g_analyze_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_analyze_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_analyze_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_analyze_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_analyze_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_angle /usr/src/tmp/gromacs-buildroot/usr/bin/g_angle: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_angle: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_angle_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_angle_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_angle_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_angle_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/g_angle_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_angle_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_angle_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_angle_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_angle_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_bond /usr/src/tmp/gromacs-buildroot/usr/bin/g_bond: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_bond: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_bond_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_bond_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_bond_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_bond_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/g_bond_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_bond_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_bond_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_bond_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_bond_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_bundle /usr/src/tmp/gromacs-buildroot/usr/bin/g_bundle: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_bundle: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_bundle_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_bundle_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_bundle_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_bundle_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/g_bundle_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_bundle_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_bundle_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_bundle_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_bundle_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_chi /usr/src/tmp/gromacs-buildroot/usr/bin/g_chi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_chi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_chi_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_chi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_chi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_chi_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/g_chi_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_chi_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_chi_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_chi_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_chi_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_cluster /usr/src/tmp/gromacs-buildroot/usr/bin/g_cluster: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_cluster: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_cluster_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_cluster_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_cluster_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_cluster_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/g_cluster_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_cluster_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_cluster_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_cluster_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_cluster_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_clustsize /usr/src/tmp/gromacs-buildroot/usr/bin/g_clustsize: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_clustsize: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_clustsize_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_clustsize_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_clustsize_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_clustsize_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/g_clustsize_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_clustsize_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_clustsize_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_clustsize_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_clustsize_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_confrms /usr/src/tmp/gromacs-buildroot/usr/bin/g_confrms: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_confrms: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_confrms_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_confrms_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_confrms_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_confrms_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/g_confrms_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_confrms_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_confrms_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_confrms_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_confrms_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_covar /usr/src/tmp/gromacs-buildroot/usr/bin/g_covar: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_covar: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_covar_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_covar_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_covar_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_covar_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/g_covar_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_covar_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_covar_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_covar_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_covar_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_current /usr/src/tmp/gromacs-buildroot/usr/bin/g_current: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_current: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_current_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_current_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_current_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_current_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/g_current_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_current_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_current_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_current_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_current_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_demux.pl `/usr/src/tmp/gromacs-buildroot/usr/bin/g_demux.pl' probably isn't an ELF file. elf_open: Exec format error + : + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_density /usr/src/tmp/gromacs-buildroot/usr/bin/g_density: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_density: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_density_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_density_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_density_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_density_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/g_density_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_density_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_density_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_density_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_density_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_densmap /usr/src/tmp/gromacs-buildroot/usr/bin/g_densmap: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_densmap: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_densmap_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_densmap_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_densmap_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_densmap_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/g_densmap_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_densmap_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_densmap_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_densmap_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_densmap_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dielectric /usr/src/tmp/gromacs-buildroot/usr/bin/g_dielectric: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dielectric: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dielectric_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_dielectric_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dielectric_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dielectric_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/g_dielectric_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dielectric_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dielectric_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_dielectric_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dielectric_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dih /usr/src/tmp/gromacs-buildroot/usr/bin/g_dih: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dih: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dih_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_dih_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dih_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dih_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/g_dih_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dih_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dih_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_dih_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dih_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dipoles /usr/src/tmp/gromacs-buildroot/usr/bin/g_dipoles: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dipoles: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dipoles_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_dipoles_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dipoles_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dipoles_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/g_dipoles_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dipoles_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dipoles_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_dipoles_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dipoles_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_disre /usr/src/tmp/gromacs-buildroot/usr/bin/g_disre: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_disre: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_disre_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_disre_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_disre_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_disre_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/g_disre_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_disre_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_disre_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_disre_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_disre_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dist /usr/src/tmp/gromacs-buildroot/usr/bin/g_dist: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dist: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dist_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_dist_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dist_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dist_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/g_dist_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dist_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dist_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_dist_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dist_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_do_dssp /usr/src/tmp/gromacs-buildroot/usr/bin/g_do_dssp: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_do_dssp: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_do_dssp_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_do_dssp_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_do_dssp_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dyndom /usr/src/tmp/gromacs-buildroot/usr/bin/g_dyndom: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dyndom: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dyndom_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_dyndom_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dyndom_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dyndom_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/g_dyndom_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dyndom_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dyndom_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_dyndom_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_dyndom_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_editconf /usr/src/tmp/gromacs-buildroot/usr/bin/g_editconf: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_editconf: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_editconf_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_editconf_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_editconf_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_eneconv /usr/src/tmp/gromacs-buildroot/usr/bin/g_eneconv: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_eneconv: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_eneconv_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_eneconv_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_eneconv_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_enemat /usr/src/tmp/gromacs-buildroot/usr/bin/g_enemat: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_enemat: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_enemat_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_enemat_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_enemat_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_enemat_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/g_enemat_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_enemat_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_enemat_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_enemat_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_enemat_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_energy /usr/src/tmp/gromacs-buildroot/usr/bin/g_energy: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_energy: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_energy_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_energy_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_energy_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_energy_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/g_energy_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_energy_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_energy_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_energy_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_energy_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_filter /usr/src/tmp/gromacs-buildroot/usr/bin/g_filter: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_filter: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_filter_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_filter_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_filter_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_filter_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/g_filter_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_filter_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_filter_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_filter_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_filter_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_genbox /usr/src/tmp/gromacs-buildroot/usr/bin/g_genbox: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_genbox: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_genbox_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_genbox_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_genbox_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_genconf /usr/src/tmp/gromacs-buildroot/usr/bin/g_genconf: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_genconf: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_genconf_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_genconf_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_genconf_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_genion /usr/src/tmp/gromacs-buildroot/usr/bin/g_genion: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_genion: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_genion_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_genion_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_genion_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_genrestr /usr/src/tmp/gromacs-buildroot/usr/bin/g_genrestr: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_genrestr: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_genrestr_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_genrestr_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_genrestr_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_gmxcheck /usr/src/tmp/gromacs-buildroot/usr/bin/g_gmxcheck: RPATH=path:/usr/lib64/openmpi/lib/ /usr/src/tmp/gromacs-buildroot/usr/bin/g_gmxcheck: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_gmxcheck_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_gmxcheck_d: RPATH=path:/usr/lib64/openmpi/lib/ /usr/src/tmp/gromacs-buildroot/usr/bin/g_gmxcheck_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_gmxdump /usr/src/tmp/gromacs-buildroot/usr/bin/g_gmxdump: RPATH=path:/usr/lib64/openmpi/lib/ /usr/src/tmp/gromacs-buildroot/usr/bin/g_gmxdump: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_gmxdump_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_gmxdump_d: RPATH=path:/usr/lib64/openmpi/lib/ /usr/src/tmp/gromacs-buildroot/usr/bin/g_gmxdump_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_grompp /usr/src/tmp/gromacs-buildroot/usr/bin/g_grompp: RPATH=path:/usr/lib64/openmpi/lib/ /usr/src/tmp/gromacs-buildroot/usr/bin/g_grompp: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_grompp_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_grompp_d: RPATH=path:/usr/lib64/openmpi/lib/ /usr/src/tmp/gromacs-buildroot/usr/bin/g_grompp_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_gyrate /usr/src/tmp/gromacs-buildroot/usr/bin/g_gyrate: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_gyrate: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_gyrate_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_gyrate_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_gyrate_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_gyrate_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/g_gyrate_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_gyrate_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_gyrate_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_gyrate_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_gyrate_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_h2order /usr/src/tmp/gromacs-buildroot/usr/bin/g_h2order: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_h2order: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_h2order_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_h2order_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_h2order_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_h2order_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/g_h2order_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_h2order_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_h2order_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_h2order_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_h2order_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_hbond /usr/src/tmp/gromacs-buildroot/usr/bin/g_hbond: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_hbond: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_hbond_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_hbond_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_hbond_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_hbond_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/g_hbond_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_hbond_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_hbond_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_hbond_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_hbond_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_helix /usr/src/tmp/gromacs-buildroot/usr/bin/g_helix: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_helix: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_helix_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_helix_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_helix_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_helix_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/g_helix_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_helix_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_helix_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_helix_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_helix_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_helixorient /usr/src/tmp/gromacs-buildroot/usr/bin/g_helixorient: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_helixorient: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_helixorient_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_helixorient_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_helixorient_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_helixorient_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/g_helixorient_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_helixorient_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_helixorient_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_helixorient_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_helixorient_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_highway /usr/src/tmp/gromacs-buildroot/usr/bin/g_highway: RPATH=path:/usr/lib64/openmpi/lib/ /usr/src/tmp/gromacs-buildroot/usr/bin/g_highway: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_highway_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_highway_d: RPATH=path:/usr/lib64/openmpi/lib/ /usr/src/tmp/gromacs-buildroot/usr/bin/g_highway_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_kinetics /usr/src/tmp/gromacs-buildroot/usr/bin/g_kinetics: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_kinetics: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_kinetics_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_kinetics_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_kinetics_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_kinetics_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/g_kinetics_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_kinetics_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_kinetics_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_kinetics_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_kinetics_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_lie /usr/src/tmp/gromacs-buildroot/usr/bin/g_lie: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_lie: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_lie_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_lie_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_lie_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_lie_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/g_lie_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_lie_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_lie_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_lie_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_lie_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_luck /usr/src/tmp/gromacs-buildroot/usr/bin/g_luck: RPATH=path:/usr/lib64/openmpi/lib/ /usr/src/tmp/gromacs-buildroot/usr/bin/g_luck: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_luck_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_luck_d: RPATH=path:/usr/lib64/openmpi/lib/ /usr/src/tmp/gromacs-buildroot/usr/bin/g_luck_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_make_edi /usr/src/tmp/gromacs-buildroot/usr/bin/g_make_edi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_make_edi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_make_edi_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_make_edi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_make_edi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_make_ndx /usr/src/tmp/gromacs-buildroot/usr/bin/g_make_ndx: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_make_ndx: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_make_ndx_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_make_ndx_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_make_ndx_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_mdmat /usr/src/tmp/gromacs-buildroot/usr/bin/g_mdmat: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_mdmat: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_mdmat_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_mdmat_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_mdmat_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_mdmat_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/g_mdmat_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_mdmat_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_mdmat_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_mdmat_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_mdmat_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_mdrun /usr/src/tmp/gromacs-buildroot/usr/bin/g_mdrun: RPATH=path:/usr/lib64/openmpi/lib/ /usr/src/tmp/gromacs-buildroot/usr/bin/g_mdrun: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_mdrun_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_mdrun_d: RPATH=path:/usr/lib64/openmpi/lib/ /usr/src/tmp/gromacs-buildroot/usr/bin/g_mdrun_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_mdrun_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/g_mdrun_mpi: RPATH=path:/usr/lib64/openmpi/lib/:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_mdrun_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_mdrun_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_mdrun_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_mdrun_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_mindist /usr/src/tmp/gromacs-buildroot/usr/bin/g_mindist: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_mindist: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_mindist_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_mindist_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_mindist_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_mindist_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/g_mindist_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_mindist_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_mindist_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_mindist_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_mindist_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_mk_angndx /usr/src/tmp/gromacs-buildroot/usr/bin/g_mk_angndx: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_mk_angndx: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_mk_angndx_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_mk_angndx_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_mk_angndx_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_morph /usr/src/tmp/gromacs-buildroot/usr/bin/g_morph: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_morph: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_morph_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_morph_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_morph_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_morph_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/g_morph_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_morph_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_morph_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_morph_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_morph_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_msd /usr/src/tmp/gromacs-buildroot/usr/bin/g_msd: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_msd: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_msd_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_msd_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_msd_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_msd_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/g_msd_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_msd_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_msd_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_msd_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_msd_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_ngmx /usr/src/tmp/gromacs-buildroot/usr/bin/g_ngmx: RPATH=path:/usr/lib64/openmpi/lib/ /usr/src/tmp/gromacs-buildroot/usr/bin/g_ngmx: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_ngmx_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_ngmx_d: RPATH=path:/usr/lib64/openmpi/lib/ /usr/src/tmp/gromacs-buildroot/usr/bin/g_ngmx_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_nmeig /usr/src/tmp/gromacs-buildroot/usr/bin/g_nmeig: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_nmeig: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_nmeig_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_nmeig_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_nmeig_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_nmeig_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/g_nmeig_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_nmeig_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_nmeig_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_nmeig_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_nmeig_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_nmens /usr/src/tmp/gromacs-buildroot/usr/bin/g_nmens: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_nmens: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_nmens_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_nmens_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_nmens_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_nmens_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/g_nmens_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_nmens_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_nmens_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_nmens_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_nmens_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_nmtraj /usr/src/tmp/gromacs-buildroot/usr/bin/g_nmtraj: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_nmtraj: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_nmtraj_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_nmtraj_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_nmtraj_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_nmtraj_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/g_nmtraj_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_nmtraj_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_nmtraj_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_nmtraj_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_nmtraj_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_order /usr/src/tmp/gromacs-buildroot/usr/bin/g_order: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_order: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_order_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_order_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_order_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_order_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/g_order_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_order_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_order_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_order_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_order_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_pdb2gmx /usr/src/tmp/gromacs-buildroot/usr/bin/g_pdb2gmx: RPATH=path:/usr/lib64/openmpi/lib/ /usr/src/tmp/gromacs-buildroot/usr/bin/g_pdb2gmx: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_pdb2gmx_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_pdb2gmx_d: RPATH=path:/usr/lib64/openmpi/lib/ /usr/src/tmp/gromacs-buildroot/usr/bin/g_pdb2gmx_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_polystat /usr/src/tmp/gromacs-buildroot/usr/bin/g_polystat: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_polystat: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_polystat_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_polystat_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_polystat_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_polystat_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/g_polystat_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_polystat_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_polystat_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_polystat_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_polystat_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_potential /usr/src/tmp/gromacs-buildroot/usr/bin/g_potential: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_potential: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_potential_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_potential_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_potential_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_potential_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/g_potential_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_potential_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_potential_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_potential_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_potential_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_principal /usr/src/tmp/gromacs-buildroot/usr/bin/g_principal: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_principal: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_principal_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_principal_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_principal_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_principal_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/g_principal_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_principal_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_principal_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_principal_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_principal_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_protonate /usr/src/tmp/gromacs-buildroot/usr/bin/g_protonate: RPATH=path:/usr/lib64/openmpi/lib/ /usr/src/tmp/gromacs-buildroot/usr/bin/g_protonate: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_protonate_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_protonate_d: RPATH=path:/usr/lib64/openmpi/lib/ /usr/src/tmp/gromacs-buildroot/usr/bin/g_protonate_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rama /usr/src/tmp/gromacs-buildroot/usr/bin/g_rama: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rama: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rama_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_rama_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rama_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rama_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/g_rama_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rama_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rama_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_rama_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rama_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rdf /usr/src/tmp/gromacs-buildroot/usr/bin/g_rdf: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rdf: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rdf_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_rdf_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rdf_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rdf_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/g_rdf_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rdf_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rdf_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_rdf_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rdf_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rms /usr/src/tmp/gromacs-buildroot/usr/bin/g_rms: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rms: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rms_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_rms_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rms_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rms_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/g_rms_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rms_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rms_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_rms_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rms_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsdist /usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsdist: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsdist: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsdist_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsdist_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsdist_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsdist_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsdist_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsdist_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsdist_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsdist_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsdist_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsf /usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsf: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsf: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsf_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsf_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsf_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsf_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsf_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsf_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsf_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsf_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rmsf_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rotacf /usr/src/tmp/gromacs-buildroot/usr/bin/g_rotacf: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rotacf: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rotacf_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_rotacf_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rotacf_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rotacf_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/g_rotacf_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rotacf_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rotacf_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_rotacf_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_rotacf_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_saltbr /usr/src/tmp/gromacs-buildroot/usr/bin/g_saltbr: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_saltbr: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_saltbr_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_saltbr_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_saltbr_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_saltbr_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/g_saltbr_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_saltbr_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_saltbr_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_saltbr_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_saltbr_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sas /usr/src/tmp/gromacs-buildroot/usr/bin/g_sas: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sas: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sas_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_sas_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sas_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sas_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/g_sas_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sas_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sas_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_sas_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sas_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sdf /usr/src/tmp/gromacs-buildroot/usr/bin/g_sdf: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sdf: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sdf_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_sdf_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sdf_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sdf_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/g_sdf_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sdf_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sdf_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_sdf_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sdf_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sgangle /usr/src/tmp/gromacs-buildroot/usr/bin/g_sgangle: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sgangle: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sgangle_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_sgangle_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sgangle_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sgangle_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/g_sgangle_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sgangle_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sgangle_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_sgangle_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sgangle_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sham /usr/src/tmp/gromacs-buildroot/usr/bin/g_sham: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sham: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sham_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_sham_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sham_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sham_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/g_sham_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sham_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sham_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_sham_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sham_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sigeps /usr/src/tmp/gromacs-buildroot/usr/bin/g_sigeps: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sigeps: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sigeps_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_sigeps_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sigeps_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sorient /usr/src/tmp/gromacs-buildroot/usr/bin/g_sorient: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sorient: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sorient_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_sorient_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sorient_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sorient_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/g_sorient_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sorient_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sorient_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_sorient_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_sorient_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_spatial /usr/src/tmp/gromacs-buildroot/usr/bin/g_spatial: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_spatial: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_spatial_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_spatial_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_spatial_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_spatial_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/g_spatial_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_spatial_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_spatial_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_spatial_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_spatial_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_spol /usr/src/tmp/gromacs-buildroot/usr/bin/g_spol: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_spol: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_spol_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_spol_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_spol_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_spol_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/g_spol_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_spol_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_spol_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_spol_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_spol_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_tcaf /usr/src/tmp/gromacs-buildroot/usr/bin/g_tcaf: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_tcaf: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_tcaf_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_tcaf_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_tcaf_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_tcaf_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/g_tcaf_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_tcaf_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_tcaf_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_tcaf_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_tcaf_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_tpbconv /usr/src/tmp/gromacs-buildroot/usr/bin/g_tpbconv: RPATH=path:/usr/lib64/openmpi/lib/ /usr/src/tmp/gromacs-buildroot/usr/bin/g_tpbconv: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_tpbconv_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_tpbconv_d: RPATH=path:/usr/lib64/openmpi/lib/ /usr/src/tmp/gromacs-buildroot/usr/bin/g_tpbconv_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_traj /usr/src/tmp/gromacs-buildroot/usr/bin/g_traj: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_traj: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_traj_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_traj_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_traj_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_traj_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/g_traj_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_traj_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_traj_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_traj_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_traj_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_trjcat /usr/src/tmp/gromacs-buildroot/usr/bin/g_trjcat: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_trjcat: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_trjcat_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_trjcat_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_trjcat_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_trjconv /usr/src/tmp/gromacs-buildroot/usr/bin/g_trjconv: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_trjconv: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_trjconv_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_trjconv_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_trjconv_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_trjorder /usr/src/tmp/gromacs-buildroot/usr/bin/g_trjorder: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_trjorder: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_trjorder_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_trjorder_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_trjorder_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_vanhove /usr/src/tmp/gromacs-buildroot/usr/bin/g_vanhove: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_vanhove: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_vanhove_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_vanhove_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_vanhove_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_vanhove_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/g_vanhove_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_vanhove_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_vanhove_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_vanhove_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_vanhove_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_velacc /usr/src/tmp/gromacs-buildroot/usr/bin/g_velacc: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_velacc: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_velacc_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_velacc_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_velacc_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_velacc_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/g_velacc_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_velacc_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_velacc_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_velacc_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_velacc_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_wham /usr/src/tmp/gromacs-buildroot/usr/bin/g_wham: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_wham: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_wham_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_wham_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_wham_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_wham_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/g_wham_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_wham_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_wham_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_wham_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_wham_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_wheel /usr/src/tmp/gromacs-buildroot/usr/bin/g_wheel: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_wheel: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_wheel_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_wheel_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_wheel_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_x2top /usr/src/tmp/gromacs-buildroot/usr/bin/g_x2top: RPATH=path:/usr/lib64/openmpi/lib/ /usr/src/tmp/gromacs-buildroot/usr/bin/g_x2top: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_x2top_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_x2top_d: RPATH=path:/usr/lib64/openmpi/lib/ /usr/src/tmp/gromacs-buildroot/usr/bin/g_x2top_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_xplor2gmx.pl `/usr/src/tmp/gromacs-buildroot/usr/bin/g_xplor2gmx.pl' probably isn't an ELF file. elf_open: Exec format error + : + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_xpm2ps /usr/src/tmp/gromacs-buildroot/usr/bin/g_xpm2ps: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_xpm2ps: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_xpm2ps_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_xpm2ps_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_xpm2ps_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_xrama /usr/src/tmp/gromacs-buildroot/usr/bin/g_xrama: RPATH=path:/usr/lib64/openmpi/lib/ /usr/src/tmp/gromacs-buildroot/usr/bin/g_xrama: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/g_xrama_d /usr/src/tmp/gromacs-buildroot/usr/bin/g_xrama_d: RPATH=path:/usr/lib64/openmpi/lib/ /usr/src/tmp/gromacs-buildroot/usr/bin/g_xrama_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/genbox_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/genbox_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/genbox_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/genbox_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/genbox_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/genbox_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/genconf_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/genconf_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/genconf_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/genconf_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/genconf_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/genconf_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/genion_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/genion_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/genion_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/genion_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/genion_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/genion_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/genrestr_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/genrestr_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/genrestr_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/genrestr_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/genrestr_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/genrestr_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/gmxcheck_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/gmxcheck_mpi: RPATH=path:/usr/lib64/openmpi/lib/:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/gmxcheck_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/gmxcheck_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/gmxcheck_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/gmxcheck_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/gmxdump_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/gmxdump_mpi: RPATH=path:/usr/lib64/openmpi/lib/:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/gmxdump_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/gmxdump_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/gmxdump_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/gmxdump_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/grompp_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/grompp_mpi: RPATH=path:/usr/lib64/openmpi/lib/:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/grompp_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/grompp_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/grompp_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/grompp_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/highway_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/highway_mpi: RPATH=path:/usr/lib64/openmpi/lib/:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/highway_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/highway_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/highway_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/highway_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/luck_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/luck_mpi: RPATH=path:/usr/lib64/openmpi/lib/:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/luck_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/luck_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/luck_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/luck_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/make_edi_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/make_edi_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/make_edi_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/make_edi_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/make_edi_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/make_edi_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/make_ndx_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/make_ndx_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/make_ndx_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/make_ndx_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/make_ndx_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/make_ndx_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/mk_angndx_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/mk_angndx_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/mk_angndx_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/mk_angndx_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/mk_angndx_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/mk_angndx_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/ngmx_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/ngmx_mpi: RPATH=path:/usr/lib64/openmpi/lib/:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/ngmx_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/ngmx_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/ngmx_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/ngmx_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/pdb2gmx_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/pdb2gmx_mpi: RPATH=path:/usr/lib64/openmpi/lib/:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/pdb2gmx_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/pdb2gmx_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/pdb2gmx_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/pdb2gmx_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/protonate_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/protonate_mpi: RPATH=path:/usr/lib64/openmpi/lib/:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/protonate_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/protonate_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/protonate_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/protonate_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/sigeps_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/sigeps_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/sigeps_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/sigeps_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/sigeps_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/sigeps_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/tpbconv_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/tpbconv_mpi: RPATH=path:/usr/lib64/openmpi/lib/:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/tpbconv_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/tpbconv_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/tpbconv_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/tpbconv_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/trjcat_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/trjcat_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/trjcat_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/trjcat_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/trjcat_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/trjcat_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/trjconv_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/trjconv_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/trjconv_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/trjconv_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/trjconv_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/trjconv_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/trjorder_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/trjorder_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/trjorder_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/trjorder_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/trjorder_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/trjorder_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/wheel_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/wheel_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/wheel_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/wheel_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/wheel_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/wheel_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/x2top_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/x2top_mpi: RPATH=path:/usr/lib64/openmpi/lib/:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/x2top_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/x2top_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/x2top_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/x2top_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/xpm2ps_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/xpm2ps_mpi: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/xpm2ps_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/xpm2ps_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/xpm2ps_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/xpm2ps_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/xrama_mpi /usr/src/tmp/gromacs-buildroot/usr/bin/xrama_mpi: RPATH=path:/usr/lib64/openmpi/lib/:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/xrama_mpi: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/xrama_mpi_d /usr/src/tmp/gromacs-buildroot/usr/bin/xrama_mpi_d: RPATH=path:/usr/lib64/openmpi/lib/:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/bin/xrama_mpi_d: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmx.so.5 /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmx.so.5: RPATH=path:/usr/lib64/openmpi/lib/ /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmx.so.5: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmx.so.5.0.0 /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmx.so.5.0.0: RPATH=/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmx.so.5.0.0: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmx_d.so.5 /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmx_d.so.5: RPATH=path:/usr/lib64/openmpi/lib/ /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmx_d.so.5: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmx_d.so.5.0.0 /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmx_d.so.5.0.0: RPATH=/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmx_d.so.5.0.0: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmx_mpi.so.5 /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmx_mpi.so.5: RPATH=path:/usr/lib64/openmpi/lib/:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmx_mpi.so.5: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmx_mpi.so.5.0.0 /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmx_mpi.so.5.0.0: RPATH=/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmx_mpi.so.5.0.0: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmx_mpi_d.so.5 /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmx_mpi_d.so.5: RPATH=path:/usr/lib64/openmpi/lib/:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmx_mpi_d.so.5: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmx_mpi_d.so.5.0.0 /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmx_mpi_d.so.5.0.0: RPATH=/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmx_mpi_d.so.5.0.0: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana.so.5 /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana.so.5: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana.so.5: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana.so.5.0.0 /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana.so.5.0.0: RPATH=/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana.so.5.0.0: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana_d.so.5 /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana_d.so.5: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana_d.so.5: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana_d.so.5.0.0 /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana_d.so.5.0.0: RPATH=/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana_d.so.5.0.0: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana_mpi.so.5 /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana_mpi.so.5: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana_mpi.so.5: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana_mpi.so.5.0.0 /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana_mpi.so.5.0.0: RPATH=/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana_mpi.so.5.0.0: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana_mpi_d.so.5 /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana_mpi_d.so.5: RPATH=path:/usr/lib64/openmpi/lib/:path:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana_mpi_d.so.5: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana_mpi_d.so.5.0.0 /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana_mpi_d.so.5.0.0: RPATH=/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana_mpi_d.so.5.0.0: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libmd.so.5 /usr/src/tmp/gromacs-buildroot/usr/lib64/libmd.so.5: RPATH=path:/usr/lib64/openmpi/lib/ /usr/src/tmp/gromacs-buildroot/usr/lib64/libmd.so.5: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libmd.so.5.0.0 /usr/src/tmp/gromacs-buildroot/usr/lib64/libmd.so.5.0.0: RPATH=/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libmd.so.5.0.0: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libmd_d.so.5 /usr/src/tmp/gromacs-buildroot/usr/lib64/libmd_d.so.5: RPATH=path:/usr/lib64/openmpi/lib/ /usr/src/tmp/gromacs-buildroot/usr/lib64/libmd_d.so.5: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libmd_d.so.5.0.0 /usr/src/tmp/gromacs-buildroot/usr/lib64/libmd_d.so.5.0.0: RPATH=/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libmd_d.so.5.0.0: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libmd_mpi.so.5 /usr/src/tmp/gromacs-buildroot/usr/lib64/libmd_mpi.so.5: RPATH=path:/usr/lib64/openmpi/lib/:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libmd_mpi.so.5: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libmd_mpi.so.5.0.0 /usr/src/tmp/gromacs-buildroot/usr/lib64/libmd_mpi.so.5.0.0: RPATH=/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libmd_mpi.so.5.0.0: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libmd_mpi.so.5.0.0T /usr/src/tmp/gromacs-buildroot/usr/lib64/libmd_mpi.so.5.0.0T: RPATH=path:/usr/lib64/openmpi/lib/:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libmd_mpi.so.5.0.0T: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libmd_mpi_d.so.5 /usr/src/tmp/gromacs-buildroot/usr/lib64/libmd_mpi_d.so.5: RPATH=path:/usr/lib64/openmpi/lib/:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libmd_mpi_d.so.5: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libmd_mpi_d.so.5.0.0 /usr/src/tmp/gromacs-buildroot/usr/lib64/libmd_mpi_d.so.5.0.0: RPATH=/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libmd_mpi_d.so.5.0.0: new RPATH: /usr/lib64/openmpi/lib + for i in /usr/src/tmp/gromacs-buildroot/usr/bin/* /usr/src/tmp/gromacs-buildroot/usr/lib64/*.so.* + chrpath -r /usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libmd_mpi_d.so.5.0.0T /usr/src/tmp/gromacs-buildroot/usr/lib64/libmd_mpi_d.so.5.0.0T: RPATH=path:/usr/lib64/openmpi/lib/:/usr/lib64/openmpi/lib /usr/src/tmp/gromacs-buildroot/usr/lib64/libmd_mpi_d.so.5.0.0T: new RPATH: /usr/lib64/openmpi/lib + /usr/lib/rpm/brp-alt Cleaning files in /usr/src/tmp/gromacs-buildroot (auto) mode of './usr/lib64/libmd_mpi_d.so.5.0.0T' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/libmd_mpi_d.so.5.0.0' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/libmd_mpi.so.5.0.0T' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/libmd_mpi.so.5.0.0' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/libgmxana_mpi_d.so.5.0.0' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/libgmx_mpi_d.so.5.0.0' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/libgmxana_mpi.so.5.0.0' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/libgmx_mpi.so.5.0.0' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/libgmxana_d.so.5.0.0' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/libmd_d.so.5.0.0' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/libgmx_d.so.5.0.0' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/libgmxana.so.5.0.0' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/libmd.so.5.0.0' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/libgmx.so.5.0.0' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) Verifying and fixing files in /usr/src/tmp/gromacs-buildroot (binconfig,pkgconfig,libtool,desktop,gnuconfig) Checking contents of files in /usr/src/tmp/gromacs-buildroot/ (default) Compressing files in /usr/src/tmp/gromacs-buildroot (auto) Adjusting library links in /usr/src/tmp/gromacs-buildroot ./usr/lib64: libgmx.so.5 -> libgmx.so.5.0.0 libmd.so.5 -> libmd.so.5.0.0 libgmxana.so.5 -> libgmxana.so.5.0.0 libgmx_d.so.5 -> libgmx_d.so.5.0.0 libmd_d.so.5 -> libmd_d.so.5.0.0 libgmxana_d.so.5 -> libgmxana_d.so.5.0.0 libgmx_mpi.so.5 -> libgmx_mpi.so.5.0.0 libgmxana_mpi.so.5 -> libgmxana_mpi.so.5.0.0 libgmx_mpi_d.so.5 -> libgmx_mpi_d.so.5.0.0 libgmxana_mpi_d.so.5 -> libgmxana_mpi_d.so.5.0.0 libmd_mpi.so.5 -> libmd_mpi.so.5.0.0T (changed) libmd_mpi_d.so.5 -> libmd_mpi_d.so.5.0.0T (changed) Verifying ELF objects in /usr/src/tmp/gromacs-buildroot (arch=normal,fhs=normal,lfs=relaxed,lint=relaxed,rpath=normal,stack=normal,textrel=normal,unresolved=normal) verify-elf: WARNING: ./usr/bin/g_mdrun_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_mdrun_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_xrama_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_xrama: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_xpm2ps_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_xpm2ps: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_x2top_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_x2top: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_wheel_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_wheel: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_trjorder_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_trjorder: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_trjconv_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_trjconv: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_trjcat_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_trjcat: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_tpbconv_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_tpbconv: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_sigeps_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_sigeps: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_protonate_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_protonate: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_pdb2gmx_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_pdb2gmx: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_ngmx_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_ngmx: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_mk_angndx_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_mk_angndx: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_mdrun_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_mdrun: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_make_ndx_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_make_ndx: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_make_edi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_make_edi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_luck_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_luck: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_highway_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_highway: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_grompp_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_grompp: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_gmxdump_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_gmxdump: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_gmxcheck_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_gmxcheck: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_genrestr_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_genrestr: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_genion_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_genion: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_genconf_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_genconf: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_genbox_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_genbox: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_eneconv_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_eneconv: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_editconf_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_editconf: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_do_dssp_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_do_dssp: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_anadock_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_anadock: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/highway_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/xrama_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/ngmx_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/sigeps_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_kinetics_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_wham_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_mdmat_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_clustsize_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_velacc_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_vanhove_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_traj_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_tcaf_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_spatial_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_sdf_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_spol_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_sorient_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_sham_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_sgangle_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_sas_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_saltbr_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_rotacf_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_rmsf_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_rmsdist_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_rms_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_rdf_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_rama_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_potential_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_polystat_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_order_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_nmens_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_nmeig_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_morph_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_msd_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_mindist_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_helix_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_hbond_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_h2order_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_gyrate_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_filter_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_lie_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_energy_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_enemat_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_dyndom_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_dist_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_disre_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_dipoles_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_principal_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_helixorient_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_dielectric_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_dih_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_densmap_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_density_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_current_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_covar_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_confrms_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_cluster_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_chi_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_bundle_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_bond_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_angle_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_anaeig_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_analyze_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/make_edi_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/anadock_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/genion_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/xpm2ps_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/wheel_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/trjorder_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/trjconv_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/trjcat_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/mk_angndx_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/make_ndx_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_nmtraj_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/genrestr_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/genconf_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/genbox_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/eneconv_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/editconf_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/do_dssp_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/x2top_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/gmxcheck_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/gmxdump_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/luck_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/protonate_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/pdb2gmx_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/tpbconv_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/grompp_mpi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/highway_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/xrama_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/ngmx_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/sigeps_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_kinetics_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_wham_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_mdmat_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_clustsize_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_velacc_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_vanhove_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_traj_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_tcaf_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_spatial_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_sdf_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_spol_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_sorient_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_sham_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_sgangle_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_sas_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_saltbr_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_rotacf_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_rmsf_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_rmsdist_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_rms_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_rdf_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_rama_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_potential_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_polystat_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_order_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_nmens_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_nmeig_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_morph_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_msd_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_mindist_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_helix_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_hbond_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_h2order_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_gyrate_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_filter_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_lie_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_energy_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_enemat_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_dyndom_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_dist_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_disre_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_dipoles_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_principal_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_helixorient_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_dielectric_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_dih_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_densmap_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_density_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_current_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_covar_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_confrms_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_cluster_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_chi_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_bundle_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_bond_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_angle_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_anaeig_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_analyze_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/make_edi_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/anadock_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/genion_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/xpm2ps_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/wheel_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/trjorder_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/trjconv_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/trjcat_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/mk_angndx_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/make_ndx_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_nmtraj_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/genrestr_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/genconf_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/genbox_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/eneconv_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/editconf_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/do_dssp_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/x2top_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/gmxcheck_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/gmxdump_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/luck_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/protonate_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/pdb2gmx_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/tpbconv_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/grompp_mpi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_kinetics_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_wham_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_mdmat_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_clustsize_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_velacc_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_vanhove_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_traj_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_tcaf_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_spatial_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_sdf_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_spol_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_sorient_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_sham_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_sgangle_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_sas_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_saltbr_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_rotacf_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_rmsf_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_rmsdist_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_rms_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_rdf_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_rama_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_potential_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_polystat_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_order_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_nmens_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_nmeig_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_morph_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_msd_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_mindist_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_helix_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_hbond_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_h2order_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_gyrate_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_filter_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_lie_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_energy_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_enemat_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_dyndom_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_dist_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_disre_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_dipoles_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_principal_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_helixorient_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_dielectric_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_dih_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_densmap_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_density_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_current_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_covar_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_confrms_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_cluster_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_chi_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_bundle_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_bond_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_angle_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_anaeig_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_analyze_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_nmtraj_d: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_kinetics: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_wham: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_mdmat: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_clustsize: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_velacc: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_vanhove: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_traj: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_tcaf: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_spatial: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_sdf: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_spol: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_sorient: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_sham: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_sgangle: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_sas: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_saltbr: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_rotacf: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_rmsf: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_rmsdist: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_rms: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_rdf: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_rama: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_potential: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_polystat: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_order: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_nmens: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_nmeig: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_morph: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_msd: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_mindist: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_helix: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_hbond: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_h2order: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_gyrate: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_filter: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_lie: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_energy: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_enemat: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_dyndom: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_dist: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_disre: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_dipoles: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_principal: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_helixorient: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_dielectric: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_dih: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_densmap: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_density: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_current: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_covar: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_confrms: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_cluster: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_chi: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_bundle: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_bond: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_angle: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_anaeig: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_analyze: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/bin/g_nmtraj: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/lib64/libmd_mpi_d.so.5.0.0T: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/lib64/libmd_mpi_d.so.5.0.0: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/lib64/libmd_mpi.so.5.0.0T: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/lib64/libmd_mpi.so.5.0.0: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/lib64/libgmxana_mpi_d.so.5.0.0: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/lib64/libgmx_mpi_d.so.5.0.0: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/lib64/libgmxana_mpi.so.5.0.0: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/lib64/libgmx_mpi.so.5.0.0: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/lib64/libgmxana_d.so.5.0.0: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/lib64/libmd_d.so.5.0.0: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/lib64/libgmx_d.so.5.0.0: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/lib64/libgmxana.so.5.0.0: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/lib64/libmd.so.5.0.0: RPATH entry found: /usr/lib64/openmpi/lib verify-elf: WARNING: ./usr/lib64/libgmx.so.5.0.0: RPATH entry found: /usr/lib64/openmpi/lib Hardlinking identical .pyc and .pyo files Processing files: gromacs-4.0.7-alt8 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.2baO3n find-provides: running scripts (alternatives,debuginfo,gir,lib,pam,perl,pkgconfig,python,shell,typelib) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.f9d793 find-requires: running scripts (cpp,debuginfo,files,gir-js,gir-python,gir,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks,systemd-services,typelib) lib.req: WARNING: /usr/src/tmp/gromacs-buildroot/usr/bin/g_analyze: overlinked libraries: /usr/lib64/libopenblas.so.0 lib.req: WARNING: /usr/src/tmp/gromacs-buildroot/usr/bin/g_analyze_d: overlinked libraries: /usr/lib64/libopenblas.so.0 lib.req: WARNING: /usr/src/tmp/gromacs-buildroot/usr/bin/g_analyze_mpi: overlinked libraries: /usr/lib64/libopenblas.so.0 lib.req: WARNING: /usr/src/tmp/gromacs-buildroot/usr/bin/g_analyze_mpi_d: overlinked libraries: /usr/lib64/libopenblas.so.0 lib.req: WARNING: /usr/src/tmp/gromacs-buildroot/usr/bin/g_hbond: overlinked libraries: /usr/lib64/libopenblas.so.0 lib.req: WARNING: /usr/src/tmp/gromacs-buildroot/usr/bin/g_hbond_d: overlinked libraries: /usr/lib64/libopenblas.so.0 lib.req: WARNING: /usr/src/tmp/gromacs-buildroot/usr/bin/g_hbond_mpi: overlinked libraries: /usr/lib64/libopenblas.so.0 lib.req: WARNING: /usr/src/tmp/gromacs-buildroot/usr/bin/g_hbond_mpi_d: overlinked libraries: /usr/lib64/libopenblas.so.0 lib.req: WARNING: /usr/src/tmp/gromacs-buildroot/usr/bin/g_kinetics: overlinked libraries: /usr/lib64/libopenblas.so.0 lib.req: WARNING: /usr/src/tmp/gromacs-buildroot/usr/bin/g_kinetics_d: overlinked libraries: /usr/lib64/libopenblas.so.0 lib.req: WARNING: /usr/src/tmp/gromacs-buildroot/usr/bin/g_kinetics_mpi: overlinked libraries: /usr/lib64/libopenblas.so.0 lib.req: WARNING: /usr/src/tmp/gromacs-buildroot/usr/bin/g_kinetics_mpi_d: overlinked libraries: /usr/lib64/libopenblas.so.0 /usr/src/tmp/gromacs-buildroot/usr/bin/g_demux.pl syntax OK /usr/src/tmp/gromacs-buildroot/usr/bin/g_xplor2gmx.pl syntax OK Requires: gromacs-common = 4.0.7-alt8, /lib64/ld-linux-x86-64.so.2, /usr/bin/perl, libX11.so.6()(64bit) >= set:oiUgZmS1kvNxeWShD68IxxrZhWBJAmK824Jj27NZBiKhya7QJH2a20VekdqAOTaWymJYl3wBk2x1BdP2D3AgbBsEp3LisNUqVJRjZb3QbeyZoGS9M0ZwMaWyM9oEAYyr5ACLNAIN6, libc.so.6(GLIBC_2.14)(64bit), libc.so.6(GLIBC_2.2.5)(64bit), libc.so.6(GLIBC_2.3)(64bit), libc.so.6(GLIBC_2.3.4)(64bit), libc.so.6(GLIBC_2.4)(64bit), libc.so.6(GLIBC_2.7)(64bit), libgmx.so.5()(64bit) >= set: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, libgmx_d.so.5()(64bit) >= set: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, libgmx_mpi.so.5()(64bit) >= set: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, libgmx_mpi_d.so.5()(64bit) >= set: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, libgsl.so.23()(64bit) >= set:qmkdQnOro2KmlIXqZDc4OU3MRrrijCppBDL3ZvW6BZbfFFC4rJx1, libm.so.6(GLIBC_2.2.5)(64bit), libmd.so.5()(64bit) >= set:mfgTAjqcF4B6GDIaXV8o5OZDA6tW5d5KpN5NRxMZqQ3EnzeV1Zs7bwD4WCV1g45t8kapnxqlnHPO8ZmaaCKADZrIVadAsws76SEMjrxCtVDmDZcHsyR8QCLXkF6LYDHONNZaIG9JzcQZtqygkPe5VycD3HwVASAL45rg6oyknzMmbMedpgYa8y6SeDgcnwZmcLgjAsbjuzyF9Zys4B53j40QPSkHC55v4WWNcWSrtk3BA0JMOLGnN, libmd_d.so.5()(64bit) >= set:mfgTAjqcF4B6GDIaXV8o5OZDA6tW5d5KpN5NRxMZqQ3EnzeV1Zs7bwD4WCV1g45t8kapnxqlnHPO8ZmaaCKADZrIVadAsws76SEMjrxCtVDmDZcHsyR8QCLXkF6LYDHONNZaIG9JzcQZtqygkPe5VycD3HwVASAL45rg6oyknzMmbMedpgYa8y6SeDgcnwZmcLgjAsbjuzyF9Zys4B53j40QPSkHC55v4WWNcWSrtk3BA0JMOLGnN, libmd_mpi.so.5()(64bit) >= set:mh0sFwfmV9xHPcy2WG2qSrrqPeqT9aqHkGGT5QPahYNXZFQw8z3, libmd_mpi_d.so.5()(64bit) >= set:mh0sFwfmV9xHPcy2WG2qSrrqPeqT9aqHkGGT5QPahYNXZFQw8z3, libopenblas.so.0()(64bit), rtld(GNU_HASH) Requires(rpmlib): rpmlib(SetVersions) Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.k8aKkh Creating gromacs-debuginfo package Processing files: gromacs-libs-4.0.7-alt8 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.TmI6wF find-provides: running scripts (alternatives,debuginfo,gir,lib,pam,perl,pkgconfig,python,shell,typelib) lib.prov: /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmx.so.5: 1348 symbols, 21 bpp lib.prov: /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmx_d.so.5: 1348 symbols, 21 bpp lib.prov: /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana.so.5: 341 symbols, 19 bpp lib.prov: /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana_d.so.5: 341 symbols, 19 bpp lib.prov: /usr/src/tmp/gromacs-buildroot/usr/lib64/libmd.so.5: 322 symbols, 19 bpp lib.prov: /usr/src/tmp/gromacs-buildroot/usr/lib64/libmd_d.so.5: 322 symbols, 19 bpp Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.uIQ6P6 find-requires: running scripts (cpp,debuginfo,files,gir-js,gir-python,gir,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks,systemd-services,typelib) lib.req: WARNING: /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana.so.5.0.0: overlinked libraries: /usr/lib64/libopenblas.so.0 lib.req: WARNING: /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana_d.so.5.0.0: overlinked libraries: /usr/lib64/libopenblas.so.0 lib.req: WARNING: /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana.so.5: overlinked libraries: /usr/lib64/libopenblas.so.0 lib.req: WARNING: /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana_d.so.5: overlinked libraries: /usr/lib64/libopenblas.so.0 Provides: libgmx.so.5()(64bit) = set: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, libgmx_d.so.5()(64bit) = set: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, libgmxana.so.5()(64bit) = set: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, libgmxana_d.so.5()(64bit) = set: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, libmd.so.5()(64bit) = set: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, libmd_d.so.5()(64bit) = set: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 Requires: gromacs-common = 4.0.7-alt8, libc.so.6(GLIBC_2.11)(64bit), libc.so.6(GLIBC_2.14)(64bit), libc.so.6(GLIBC_2.2.5)(64bit), libc.so.6(GLIBC_2.3)(64bit), libc.so.6(GLIBC_2.3.4)(64bit), libc.so.6(GLIBC_2.4)(64bit), libc.so.6(GLIBC_2.7)(64bit), libfftw3.so.3()(64bit) >= set:lhRviZyOH3Z6fGJT03sbjTGvskrJcZc8YJd6Z40NTd1, libfftw3f.so.3()(64bit) >= set:lhFZpi5UEx4HyjpRfT63zoy92T3kgVbCLRWJcO8HL3, libgsl.so.23()(64bit) >= set:qmkdQnOro2KmlIXqZDc4OU3MRrrijCppBDL3ZvW6BZbfFFC4rJx1, liblapack.so.4()(64bit) >= set:omax1kCj8, libm.so.6(GLIBC_2.2.5)(64bit), libm.so.6(GLIBC_2.27)(64bit), libopenblas.so.0()(64bit), rtld(GNU_HASH) Requires(rpmlib): rpmlib(SetVersions) Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.958wRD Creating gromacs-libs-debuginfo package Processing files: gromacs-mpi-4.0.7-alt8 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.OHIqZd find-provides: running scripts (alternatives,debuginfo,gir,lib,pam,perl,pkgconfig,python,shell,typelib) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.VbdjdR find-requires: running scripts (cpp,debuginfo,files,gir-js,gir-python,gir,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks,systemd-services,typelib) Requires: gromacs-common = 4.0.7-alt8, /lib64/ld-linux-x86-64.so.2, /usr/lib64/openmpi/lib/libmpi.so.20, libc.so.6(GLIBC_2.2.5)(64bit), libc.so.6(GLIBC_2.3.4)(64bit), libc.so.6(GLIBC_2.4)(64bit), libc.so.6(GLIBC_2.7)(64bit), libgmx_mpi.so.5()(64bit) >= set:ohsOuTxkT4szlByhH3u8hMrApZdcEQbY868b0rYTQgUD0CvRIj4cHGGLm8BkTP1woJuRhrP9aukBHR8OngUbBLqumY4FxnK7pA8OsqZI5wyRNu986lgUnKnadfOpHWgnNHFWb7LqrPdmivKHv8j7JzKsZ2cG5aHmTGxZclJVfpcMvSxVFEtoJKNC0QjdahuN07q5ZtUWzVNZcaY0oY0UWqGrPa41, libgmx_mpi_d.so.5()(64bit) >= set:ohsOuTxkT4szlByhH3u8hMrApZdcEQbY868b0rYTQgUD0CvRIj4cHGGLm8BkTP1woJuRhrP9aukBbiCavFYlPPyD8dYOZ8ci4peJvK0kIeSb1NE22ZyTbBC7VIltEHURkZ5euRSCrIAZstZ3AFzShnKuxhJgpRWmdIDHqPvOowZIecf5J3HRdS4wuGh9Ob6UgHet6OMDZoVNZcaY0oY0UWqGrPa41, libm.so.6(GLIBC_2.2.5)(64bit), libmd_mpi.so.5()(64bit) >= set:mfgTAjqcF4B6GDIaXV8o5OZDA6tW5d5KpN5NRxMZqQ3EnzeVZkdwluu04hh72BiSlEmRRq9hlkct9fZ7pPlq8V0VeU8nrxCtVDmDZcHsyR8QCLXkF6LYheDZaIG9JzcQsA1RIjhK8PVMaoeFdVbhN6A1C8RR8IR2Ijj64L2wRd94P5ELNY2dhOJcVBelbs4B53jMPCkHC55v4WWNcWSrtk3BA0JMOLGnN, libmd_mpi_d.so.5()(64bit) >= set:mfgTAjqcF4B6GDIaXV8o5OZDA6tW5d5KpN5NRxMZqQ3EnzeVZkdwluu04hh72BiSlEmRRq9hlkct9fZ7pPlq8V0VeU8nrxCtVDmDZcHsyR8QCLXkF6LYheDZaIG9JzcQsA1RIjhK8PVMaoeFdVbhN6A1C8RR8IR2Ijj64L2wRd94P5ELNY2dhOJcVBelbs4B53jMPCkHC55v4WWNcWSrtk3BA0JMOLGnN, rtld(GNU_HASH) Requires(rpmlib): rpmlib(SetVersions) Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.8UvZwx Creating gromacs-mpi-debuginfo package Processing files: gromacs-common-4.0.7-alt8 Executing(%doc): /bin/sh -e /usr/src/tmp/rpm-tmp.3783 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd gromacs-4.0.7 + DOCDIR=/usr/src/tmp/gromacs-buildroot/usr/share/doc/gromacs-common-4.0.7 + export DOCDIR + rm -rf /usr/src/tmp/gromacs-buildroot/usr/share/doc/gromacs-common-4.0.7 + /bin/mkdir -p /usr/src/tmp/gromacs-buildroot/usr/share/doc/gromacs-common-4.0.7 + cp -prL AUTHORS COPYING README /usr/src/tmp/gromacs-buildroot/usr/share/doc/gromacs-common-4.0.7 + chmod -R go-w /usr/src/tmp/gromacs-buildroot/usr/share/doc/gromacs-common-4.0.7 + chmod -R a+rX /usr/src/tmp/gromacs-buildroot/usr/share/doc/gromacs-common-4.0.7 + exit 0 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.hSiQth find-provides: running scripts (alternatives,debuginfo,gir,lib,pam,perl,pkgconfig,python,shell,typelib) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.EIEHv4 find-requires: running scripts (cpp,debuginfo,files,gir-js,gir-python,gir,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks,systemd-services,typelib) Processing files: gromacs-devel-4.0.7-alt8 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.LaaYDU find-provides: running scripts (alternatives,debuginfo,gir,lib,pam,perl,pkgconfig,python,shell,typelib) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.0iNMRN find-requires: running scripts (cpp,debuginfo,files,gir-js,gir-python,gir,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks,systemd-services,typelib) /usr/src/tmp/gromacs-buildroot/usr/include/gromacs/statusio.h:45:10: fatal error: sheader.h: No such file or directory #include "sheader.h" ^~~~~~~~~~~ compilation terminated. cpp.req: /usr/src/tmp/gromacs-buildroot/usr/include/gromacs/statusio.h: cpp failed, trying c++ mode /usr/src/tmp/gromacs-buildroot/usr/include/gromacs/statusio.h:45:10: fatal error: sheader.h: No such file or directory #include "sheader.h" ^~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/gromacs-buildroot/usr/include/gromacs/statusio.h: cpp failed Requires: gromacs-common = 4.0.7-alt8, gromacs-libs = 4.0.7-alt8, /usr/lib64/libgmx.so.5.0.0, /usr/lib64/libgmx_d.so.5.0.0, /usr/lib64/libgmxana.so.5.0.0, /usr/lib64/libgmxana_d.so.5.0.0, /usr/lib64/libmd.so.5.0.0, /usr/lib64/libmd_d.so.5.0.0 Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.bn7o4R Processing files: gromacs-mpi-devel-4.0.7-alt8 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.C7YHmZ find-provides: running scripts (alternatives,debuginfo,gir,lib,pam,perl,pkgconfig,python,shell,typelib) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.XqgMK9 find-requires: running scripts (cpp,debuginfo,files,gir-js,gir-python,gir,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks,systemd-services,typelib) Requires: gromacs-mpi-libs = 4.0.7-alt8, gromacs-devel = 4.0.7-alt8, /usr/lib64/libgmx_mpi.so.5.0.0, /usr/lib64/libgmx_mpi_d.so.5.0.0, /usr/lib64/libgmxana_mpi.so.5.0.0, /usr/lib64/libgmxana_mpi_d.so.5.0.0, /usr/lib64/libmd_mpi.so.5.0.0, /usr/lib64/libmd_mpi_d.so.5.0.0 Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.O68nen Processing files: gromacs-mpi-libs-4.0.7-alt8 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.jZlkRD find-provides: running scripts (alternatives,debuginfo,gir,lib,pam,perl,pkgconfig,python,shell,typelib) lib.prov: /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmx_mpi.so.5: 1348 symbols, 21 bpp lib.prov: /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmx_mpi_d.so.5: 1348 symbols, 21 bpp lib.prov: /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana_mpi.so.5: 341 symbols, 19 bpp lib.prov: /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana_mpi_d.so.5: 341 symbols, 19 bpp lib.prov: /usr/src/tmp/gromacs-buildroot/usr/lib64/libmd_mpi.so.5: 328 symbols, 19 bpp lib.prov: /usr/src/tmp/gromacs-buildroot/usr/lib64/libmd_mpi_d.so.5: 328 symbols, 19 bpp Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.Q6THzX find-requires: running scripts (cpp,debuginfo,files,gir-js,gir-python,gir,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks,systemd-services,typelib) lib.req: WARNING: /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana_mpi.so.5.0.0: overlinked libraries: /usr/lib64/libopenblas.so.0 lib.req: WARNING: /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana_mpi_d.so.5.0.0: overlinked libraries: /usr/lib64/libopenblas.so.0 lib.req: WARNING: /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana_mpi.so.5: overlinked libraries: /usr/lib64/libopenblas.so.0 lib.req: WARNING: /usr/src/tmp/gromacs-buildroot/usr/lib64/libgmxana_mpi_d.so.5: overlinked libraries: /usr/lib64/libopenblas.so.0 Provides: libgmx_mpi.so.5()(64bit) = set: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, libgmx_mpi_d.so.5()(64bit) = set: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, libgmxana_mpi.so.5()(64bit) = set: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, libgmxana_mpi_d.so.5()(64bit) = set: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, libmd_mpi.so.5()(64bit) = set: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, libmd_mpi_d.so.5()(64bit) = set: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 Requires: gromacs-common = 4.0.7-alt8, /usr/lib64/openmpi/lib/libmpi.so.20, libc.so.6(GLIBC_2.11)(64bit), libc.so.6(GLIBC_2.14)(64bit), libc.so.6(GLIBC_2.2.5)(64bit), libc.so.6(GLIBC_2.3)(64bit), libc.so.6(GLIBC_2.3.4)(64bit), libc.so.6(GLIBC_2.4)(64bit), libc.so.6(GLIBC_2.7)(64bit), libfftw3.so.3()(64bit) >= set:lhRviZyOH3Z6fGJT03sbjTGvskrJcZc8YJd6Z40NTd1, libfftw3f.so.3()(64bit) >= set:lhFZpi5UEx4HyjpRfT63zoy92T3kgVbCLRWJcO8HL3, libgsl.so.23()(64bit) >= set:qmkdQnOro2KmlIXqZDc4OU3MRrrijCppBDL3ZvW6BZbfFFC4rJx1, liblapack.so.4()(64bit) >= set:omax1kCj8, libm.so.6(GLIBC_2.2.5)(64bit), libm.so.6(GLIBC_2.27)(64bit), libopenblas.so.0()(64bit), libpthread.so.0(GLIBC_2.2.5)(64bit), rtld(GNU_HASH) Requires(rpmlib): rpmlib(SetVersions) Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.T8U2Dp Creating gromacs-mpi-libs-debuginfo package Processing files: gromacs-shell-extensions-4.0.7-alt8 Executing(%doc): /bin/sh -e /usr/src/tmp/rpm-tmp.30265 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd gromacs-4.0.7 + DOCDIR=/usr/src/tmp/gromacs-buildroot/usr/share/doc/gromacs-shell-extensions-4.0.7 + export DOCDIR + rm -rf /usr/src/tmp/gromacs-buildroot/usr/share/doc/gromacs-shell-extensions-4.0.7 + /bin/mkdir -p /usr/src/tmp/gromacs-buildroot/usr/share/doc/gromacs-shell-extensions-4.0.7 + cp -prL completion.csh /usr/src/tmp/gromacs-buildroot/usr/share/doc/gromacs-shell-extensions-4.0.7 + chmod -R go-w /usr/src/tmp/gromacs-buildroot/usr/share/doc/gromacs-shell-extensions-4.0.7 + chmod -R a+rX /usr/src/tmp/gromacs-buildroot/usr/share/doc/gromacs-shell-extensions-4.0.7 + exit 0 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.2Pv3hV find-provides: running scripts (alternatives,debuginfo,gir,lib,pam,perl,pkgconfig,python,shell,typelib) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.p4FJ1t find-requires: running scripts (cpp,debuginfo,files,gir-js,gir-python,gir,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks,systemd-services,typelib) Obsoletes: gromacs-bash, gromacs-zsh, gromacs-csh Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.yhvQQ5 Processing files: gromacs-tutor-4.0.7-alt8 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.x1Z9LK find-provides: running scripts (alternatives,debuginfo,gir,lib,pam,perl,pkgconfig,python,shell,typelib) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.Qdw5Ms find-requires: running scripts (cpp,debuginfo,files,gir-js,gir-python,gir,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks,systemd-services,typelib) Requires: /bin/csh Processing files: gromacs-doc-4.0.7-alt8 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.By1xUd find-provides: running scripts (alternatives,debuginfo,gir,lib,pam,perl,pkgconfig,python,shell,typelib) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.I82661 find-requires: running scripts (cpp,debuginfo,files,gir-js,gir-python,gir,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks,systemd-services,typelib) Processing files: gromacs-debuginfo-4.0.7-alt8 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.FP8mOT find-provides: running scripts (debuginfo) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.UR6B7P find-requires: running scripts (debuginfo) Requires: gromacs = 4.0.7-alt8, /usr/lib/debug/lib64/ld-linux-x86-64.so.2.debug, debug64(libX11.so.6), debug64(libc.so.6), debug64(libgmx.so.5), debug64(libgmx_d.so.5), debug64(libgmx_mpi.so.5), debug64(libgmx_mpi_d.so.5), debug64(libgsl.so.23), debug64(libm.so.6), debug64(libmd.so.5), debug64(libmd_d.so.5), debug64(libmd_mpi.so.5), debug64(libmd_mpi_d.so.5), debug64(libopenblas.so.0) Processing files: gromacs-libs-debuginfo-4.0.7-alt8 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.L5O6oJ find-provides: running scripts (debuginfo) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.2CepUF find-requires: running scripts (debuginfo) Provides: debug64(libgmx.so.5), debug64(libgmx_d.so.5), debug64(libgmxana.so.5), debug64(libgmxana_d.so.5), debug64(libmd.so.5), debug64(libmd_d.so.5) Requires: gromacs-libs = 4.0.7-alt8, debug64(libc.so.6), debug64(libfftw3.so.3), debug64(libfftw3f.so.3), debug64(libgsl.so.23), debug64(liblapack.so.4), debug64(libm.so.6), debug64(libopenblas.so.0) Processing files: gromacs-mpi-debuginfo-4.0.7-alt8 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.544PnI find-provides: running scripts (debuginfo) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.sDH9WN find-requires: running scripts (debuginfo) Requires: gromacs-mpi = 4.0.7-alt8, /usr/lib/debug/lib64/ld-linux-x86-64.so.2.debug, /usr/lib/debug/usr/lib64/openmpi/lib/libmpi.so.20.debug, debug64(libc.so.6), debug64(libgmx_mpi.so.5), debug64(libgmx_mpi_d.so.5), debug64(libm.so.6), debug64(libmd_mpi.so.5), debug64(libmd_mpi_d.so.5) Processing files: gromacs-mpi-libs-debuginfo-4.0.7-alt8 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.lgYEXW find-provides: running scripts (debuginfo) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.8jOFc9 find-requires: running scripts (debuginfo) Provides: debug64(libgmx_mpi.so.5), debug64(libgmx_mpi_d.so.5), debug64(libgmxana_mpi.so.5), debug64(libgmxana_mpi_d.so.5), debug64(libmd_mpi.so.5), debug64(libmd_mpi_d.so.5) Requires: gromacs-mpi-libs = 4.0.7-alt8, /usr/lib/debug/usr/lib64/openmpi/lib/libmpi.so.20.debug, debug64(libc.so.6), debug64(libfftw3.so.3), debug64(libfftw3f.so.3), debug64(libgsl.so.23), debug64(liblapack.so.4), debug64(libm.so.6), debug64(libopenblas.so.0), debug64(libpthread.so.0) Adding to gromacs a strict dependency on gromacs-libs Adding to gromacs a strict dependency on gromacs-mpi-libs Adding to gromacs-mpi a strict dependency on gromacs-mpi-libs Adding to gromacs-debuginfo a strict dependency on gromacs-libs-debuginfo Adding to gromacs-debuginfo a strict dependency on gromacs-mpi-libs-debuginfo Adding to gromacs-mpi-debuginfo a strict dependency on gromacs-mpi-libs-debuginfo Removing from gromacs-debuginfo 204 sources provided by gromacs-libs-debuginfo also prunning dir /usr/src/debug/gromacs-4.0.7/include/types Removing from gromacs-mpi-debuginfo 80 sources provided by gromacs-mpi-libs-debuginfo also prunning dir /usr/src/debug/gromacs-4.0.7/include/types Removing 4 extra deps from gromacs due to dependency on gromacs-libs Removing 4 extra deps from gromacs due to dependency on gromacs-mpi-libs Removing 6 extra deps from gromacs-devel due to dependency on gromacs-libs Removing 5 extra deps from gromacs-mpi due to dependency on gromacs-mpi-libs Removing 6 extra deps from gromacs-mpi-devel due to dependency on gromacs-mpi-libs Removing 4 extra deps from gromacs-debuginfo due to dependency on gromacs-libs-debuginfo Removing 4 extra deps from gromacs-debuginfo due to dependency on gromacs-mpi-libs-debuginfo Removing 4 extra deps from gromacs-mpi-debuginfo due to dependency on gromacs-mpi-libs-debuginfo Removing 12 extra deps from gromacs due to repentancy on gromacs-libs Removing 1 extra deps from gromacs-devel due to repentancy on gromacs-libs Removing 8 extra deps from gromacs-mpi due to repentancy on gromacs-mpi-libs Removing 4 extra deps from gromacs-debuginfo due to repentancy on gromacs-libs-debuginfo Removing 3 extra deps from gromacs-mpi-debuginfo due to repentancy on gromacs-mpi-libs-debuginfo Wrote: /usr/src/RPM/RPMS/x86_64/gromacs-4.0.7-alt8.x86_64.rpm (w2T8.xzdio) Wrote: /usr/src/RPM/RPMS/x86_64/gromacs-libs-4.0.7-alt8.x86_64.rpm (w2.lzdio) Wrote: /usr/src/RPM/RPMS/x86_64/gromacs-mpi-4.0.7-alt8.x86_64.rpm (w2.lzdio) Wrote: /usr/src/RPM/RPMS/noarch/gromacs-common-4.0.7-alt8.noarch.rpm (w2.lzdio) Wrote: /usr/src/RPM/RPMS/x86_64/gromacs-devel-4.0.7-alt8.x86_64.rpm (w2.lzdio) Wrote: /usr/src/RPM/RPMS/x86_64/gromacs-mpi-devel-4.0.7-alt8.x86_64.rpm (w2.lzdio) Wrote: /usr/src/RPM/RPMS/x86_64/gromacs-mpi-libs-4.0.7-alt8.x86_64.rpm (w2.lzdio) Wrote: /usr/src/RPM/RPMS/x86_64/gromacs-shell-extensions-4.0.7-alt8.x86_64.rpm (w2.lzdio) Wrote: /usr/src/RPM/RPMS/noarch/gromacs-tutor-4.0.7-alt8.noarch.rpm (w2.lzdio) Wrote: /usr/src/RPM/RPMS/noarch/gromacs-doc-4.0.7-alt8.noarch.rpm (w2.lzdio) Wrote: /usr/src/RPM/RPMS/x86_64/gromacs-debuginfo-4.0.7-alt8.x86_64.rpm (w2T8.xzdio) Wrote: /usr/src/RPM/RPMS/x86_64/gromacs-libs-debuginfo-4.0.7-alt8.x86_64.rpm (w2T8.xzdio) Wrote: /usr/src/RPM/RPMS/x86_64/gromacs-mpi-debuginfo-4.0.7-alt8.x86_64.rpm (w2.lzdio) Wrote: /usr/src/RPM/RPMS/x86_64/gromacs-mpi-libs-debuginfo-4.0.7-alt8.x86_64.rpm (w2T8.xzdio) 771.26user 327.22system 5:36.47elapsed 326%CPU (0avgtext+0avgdata 215680maxresident)k 0inputs+0outputs (0major+115562589minor)pagefaults 0swaps 785.22user 331.80system 5:55.32elapsed 314%CPU (0avgtext+0avgdata 215680maxresident)k 576inputs+0outputs (0major+116409532minor)pagefaults 0swaps --- gromacs-4.0.7-alt8.x86_64.rpm.repo 2012-08-11 20:29:06.000000000 +0000 +++ gromacs-4.0.7-alt8.x86_64.rpm.hasher 2021-08-08 11:15:27.815913924 +0000 @@ -354,3 +354,2 @@ /usr/bin/xrama_mpi_d 100755 root:root -Requires: gromacs-common = 4.0.7-alt8 Requires: /lib64/ld-linux-x86-64.so.2 @@ -358,20 +357,4 @@ Requires: libX11.so.6()(64bit) >= set:oiUgZmS1kvNxeWShD68IxxrZhWBJAmK824Jj27NZBiKhya7QJH2a20VekdqAOTaWymJYl3wBk2x1BdP2D3AgbBsEp3LisNUqVJRjZb3QbeyZoGS9M0ZwMaWyM9oEAYyr5ACLNAIN6 -Requires: rpmlib(SetVersions) -Requires: libc.so.6(GLIBC_2.2.5)(64bit) -Requires: libc.so.6(GLIBC_2.3)(64bit) -Requires: libc.so.6(GLIBC_2.3.4)(64bit) -Requires: libc.so.6(GLIBC_2.4)(64bit) -Requires: libc.so.6(GLIBC_2.7)(64bit) -Requires: libgmx.so.5()(64bit) >= set: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 -Requires: libgmx_d.so.5()(64bit) >= set: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 -Requires: libgmx_mpi.so.5()(64bit) >= set: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 -Requires: libgmx_mpi_d.so.5()(64bit) >= set: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 -Requires: libgsl.so.0()(64bit) >= set:qmkdQnOro2KmlIXqZDc4OU3MRrrijCppBDL3ZvW6BZbfFFC4rJx1 -Requires: libm.so.6(GLIBC_2.2.5)(64bit) -Requires: libmd.so.5()(64bit) >= set:mfgTAjqcF4B6GDIaXV8o5OZDA6tW5d5KpN5NRxMZqQ3EnzeV1Zs7bwD4WCV1g45t8kapnxqlnHPO8ZmaaCKADZrIVadAsws76SEMjrxCtVDmDZcHsyR8QCLXkF6LYDHONNZaIG9JzcQZtqygkPe5VycD3HwVASAL45rg6oyknzMmbMedpgYa8y6SeDgcnwZmcLgjAsbjuzyF9Zys4B53j40QPSkHC55v4WWNcWSrtk3BA0JMOLGnN -Requires: libmd_d.so.5()(64bit) >= set:mfgTAjqcF4B6GDIaXV8o5OZDA6tW5d5KpN5NRxMZqQ3EnzeV1Zs7bwD4WCV1g45t8kapnxqlnHPO8ZmaaCKADZrIVadAsws76SEMjrxCtVDmDZcHsyR8QCLXkF6LYDHONNZaIG9JzcQZtqygkPe5VycD3HwVASAL45rg6oyknzMmbMedpgYa8y6SeDgcnwZmcLgjAsbjuzyF9Zys4B53j40QPSkHC55v4WWNcWSrtk3BA0JMOLGnN -Requires: libmd_mpi.so.5()(64bit) >= set:mh0sFwfmV9xHPcy2WG2qSrrqPeqT9aqHkGGT5QPahYNXZFQw8z3 -Requires: libmd_mpi_d.so.5()(64bit) >= set:mh0sFwfmV9xHPcy2WG2qSrrqPeqT9aqHkGGT5QPahYNXZFQw8z3 -Requires: libpthread.so.0(GLIBC_2.2.5)(64bit) -Requires: rtld(GNU_HASH) +Requires: gromacs-libs = 4.0.7-alt8 +Requires: gromacs-mpi-libs = 4.0.7-alt8 Requires: rpmlib(PayloadIsLzma) @@ -380,354 +363,354 @@ File: /usr/bin/GMXRC.bash 100755 root:root 4fe2ba04661499f1fd97f0cf5a69cb87 -File: /usr/bin/anadock_mpi 100755 root:root 27edb58cf8b643c999a4f16eabee1f8e -File: /usr/bin/anadock_mpi_d 100755 root:root 726280727bdc366e4158e2734db9f155 -File: /usr/bin/do_dssp_mpi 100755 root:root 9fd14face783c17beff40e48ce96d6ad -File: /usr/bin/do_dssp_mpi_d 100755 root:root 2411a552d235d40449dcb5ecc400bce3 -File: /usr/bin/editconf_mpi 100755 root:root f3bf2612153498ef5402af0403d298c4 -File: /usr/bin/editconf_mpi_d 100755 root:root 68f47c1ab1dfa96e6ec637abdcf11bd2 -File: /usr/bin/eneconv_mpi 100755 root:root 096a3622d6d73d3ff79977e2121502e3 -File: /usr/bin/eneconv_mpi_d 100755 root:root 37a27e343a95411a82bc1bfc90206a85 -File: /usr/bin/g_anadock 100755 root:root c25501df23b7a8d985f68f22ac900e3a -File: /usr/bin/g_anadock_d 100755 root:root 42fd99e6e46ee1695439052c38d353e9 -File: /usr/bin/g_anaeig 100755 root:root 13f911c7e894aab40e9c3f140643ba53 -File: /usr/bin/g_anaeig_d 100755 root:root bfc58674ac82e2ad2358242f1e6747ce -File: /usr/bin/g_anaeig_mpi 100755 root:root e843e0237cc793e6ea258eb599bc400b -File: /usr/bin/g_anaeig_mpi_d 100755 root:root 1f99ee6c3af6f67196ec5687cec98c47 -File: /usr/bin/g_analyze 100755 root:root d413f328215e0a5fe9656443a2cc54a5 -File: /usr/bin/g_analyze_d 100755 root:root efbfa12051e6ee217ca7d7aa470348af -File: /usr/bin/g_analyze_mpi 100755 root:root fd896d6afc6981b6be5338d67865c790 -File: /usr/bin/g_analyze_mpi_d 100755 root:root 43ad70f7302fa0845ba85d8ba0c73cc5 -File: /usr/bin/g_angle 100755 root:root a51b92dd949f7c5d1df865dee0ed5395 -File: /usr/bin/g_angle_d 100755 root:root 421ff37cb5d98d63691ff82dcbc0f026 -File: /usr/bin/g_angle_mpi 100755 root:root ad6b8e3d156982f20e3ac80d971eabed -File: /usr/bin/g_angle_mpi_d 100755 root:root df91f27c7af4424b2c9d5274d1506418 -File: /usr/bin/g_bond 100755 root:root b146376ab2774fd234d2e6294c417337 -File: /usr/bin/g_bond_d 100755 root:root 88b9c3a996e9b228cc2e0be07082cd83 -File: /usr/bin/g_bond_mpi 100755 root:root 164108b488bc5454ad8438fb95e587d0 -File: /usr/bin/g_bond_mpi_d 100755 root:root 74544adc3c4496569619c978979830dc -File: /usr/bin/g_bundle 100755 root:root e6d3f728d00b2d311fc179d031de6b7a -File: /usr/bin/g_bundle_d 100755 root:root 6c8c7f57179cba39fda3657b316fc159 -File: /usr/bin/g_bundle_mpi 100755 root:root 25a098d4384df43694789059225b26eb -File: /usr/bin/g_bundle_mpi_d 100755 root:root 07a88d9b3af16d0ff8a6659affae85fb -File: /usr/bin/g_chi 100755 root:root dc01344640b70a7671cbed4d1e6035e4 -File: /usr/bin/g_chi_d 100755 root:root d0c73e3bf123824b7435a28139fe6a88 -File: /usr/bin/g_chi_mpi 100755 root:root 632b78da27977caa17f0b6ef66238266 -File: /usr/bin/g_chi_mpi_d 100755 root:root 939b12f3e7b2dd1bdb67e85fcfbdf2f2 -File: /usr/bin/g_cluster 100755 root:root 21c80031d44074041a26a0346128853c -File: /usr/bin/g_cluster_d 100755 root:root 59699f2216d78e851599c1c96537358d -File: /usr/bin/g_cluster_mpi 100755 root:root ce59c1f799138efdcd971add57f9de87 -File: /usr/bin/g_cluster_mpi_d 100755 root:root 48e854b4ed752c2d8392d314b25a6258 -File: /usr/bin/g_clustsize 100755 root:root d0774f3548361a00b305b08011b1e0ce -File: /usr/bin/g_clustsize_d 100755 root:root ce8fb82ddc8d1bf398704e5bcfa09832 -File: /usr/bin/g_clustsize_mpi 100755 root:root d6ce888505f19067428f866109f34a43 -File: /usr/bin/g_clustsize_mpi_d 100755 root:root 55f195e532a30ee58a55f505c6889c2f -File: /usr/bin/g_confrms 100755 root:root 872b41888d05024db271355dcbdd6d43 -File: /usr/bin/g_confrms_d 100755 root:root 1ed9cbb2c0168e802b1326381a485e34 -File: /usr/bin/g_confrms_mpi 100755 root:root e5a2bf0853f384a06feda020bc6ad038 -File: /usr/bin/g_confrms_mpi_d 100755 root:root 244d0075c5016d91f54c5a30c14194f7 -File: /usr/bin/g_covar 100755 root:root e2086234f587a7e3d291dda6528a315d -File: /usr/bin/g_covar_d 100755 root:root 09df1c741c600116c1320b1e1094cda7 -File: /usr/bin/g_covar_mpi 100755 root:root fb40b65103774848734fe9fec9e889fe -File: /usr/bin/g_covar_mpi_d 100755 root:root ef5719cd08fe481cf9b6f13b1248e97d 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root:root -/usr/src/debug/gromacs-4.0.7/include/writeps.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/xtcio.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/xvgr.h 100644 root:root +/usr/src/debug/gromacs-4.0.7/mpi-double 40755 root:root +/usr/src/debug/gromacs-4.0.7/mpi-double/src 40755 root:root +/usr/src/debug/gromacs-4.0.7/mpi-double/src/kernel 40755 root:root +/usr/src/debug/gromacs-4.0.7/mpi-double/src/ngmx 40755 root:root +/usr/src/debug/gromacs-4.0.7/mpi-double/src/tools 40755 root:root +/usr/src/debug/gromacs-4.0.7/mpi-single 40755 root:root +/usr/src/debug/gromacs-4.0.7/mpi-single/src 40755 root:root +/usr/src/debug/gromacs-4.0.7/mpi-single/src/kernel 40755 root:root +/usr/src/debug/gromacs-4.0.7/mpi-single/src/ngmx 40755 root:root +/usr/src/debug/gromacs-4.0.7/mpi-single/src/tools 40755 root:root +/usr/src/debug/gromacs-4.0.7/single 40755 root:root +/usr/src/debug/gromacs-4.0.7/single/src 40755 root:root +/usr/src/debug/gromacs-4.0.7/single/src/kernel 40755 root:root +/usr/src/debug/gromacs-4.0.7/single/src/ngmx 40755 root:root +/usr/src/debug/gromacs-4.0.7/single/src/tools 40755 root:root /usr/src/debug/gromacs-4.0.7/src 40755 root:root @@ -1481,24 +1401,6 @@ /usr/src/debug/gromacs-4.0.7/src/tools 40755 root:root -/usr/src/debug/gromacs-4.0.7/src/tools/addconf.c 100644 root:root -/usr/src/debug/gromacs-4.0.7/src/tools/addconf.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/src/tools/anadih.c 100644 root:root /usr/src/debug/gromacs-4.0.7/src/tools/anadock.c 100644 root:root -/usr/src/debug/gromacs-4.0.7/src/tools/autocorr.c 100644 root:root -/usr/src/debug/gromacs-4.0.7/src/tools/calcpot.c 100644 root:root -/usr/src/debug/gromacs-4.0.7/src/tools/calcpot.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/src/tools/cmat.c 100644 root:root -/usr/src/debug/gromacs-4.0.7/src/tools/cmat.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/src/tools/correl.c 100644 root:root -/usr/src/debug/gromacs-4.0.7/src/tools/correl.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/src/tools/dlist.c 100644 root:root /usr/src/debug/gromacs-4.0.7/src/tools/do_dssp.c 100644 root:root /usr/src/debug/gromacs-4.0.7/src/tools/editconf.c 100644 root:root -/usr/src/debug/gromacs-4.0.7/src/tools/eigensolver.c 100644 root:root -/usr/src/debug/gromacs-4.0.7/src/tools/eigensolver.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/src/tools/eigio.c 100644 root:root -/usr/src/debug/gromacs-4.0.7/src/tools/eigio.h 100644 root:root /usr/src/debug/gromacs-4.0.7/src/tools/eneconv.c 100644 root:root -/usr/src/debug/gromacs-4.0.7/src/tools/expfit.c 100644 root:root -/usr/src/debug/gromacs-4.0.7/src/tools/fitahx.c 100644 root:root -/usr/src/debug/gromacs-4.0.7/src/tools/fitahx.h 100644 root:root /usr/src/debug/gromacs-4.0.7/src/tools/g_anaeig.c 100644 root:root @@ -1566,76 +1468,2 @@ /usr/src/debug/gromacs-4.0.7/src/tools/genrestr.c 100644 root:root -/usr/src/debug/gromacs-4.0.7/src/tools/gmx_anaeig.c 100644 root:root -/usr/src/debug/gromacs-4.0.7/src/tools/gmx_analyze.c 100644 root:root -/usr/src/debug/gromacs-4.0.7/src/tools/gmx_angle.c 100644 root:root -/usr/src/debug/gromacs-4.0.7/src/tools/gmx_bond.c 100644 root:root -/usr/src/debug/gromacs-4.0.7/src/tools/gmx_bundle.c 100644 root:root -/usr/src/debug/gromacs-4.0.7/src/tools/gmx_chi.c 100644 root:root -/usr/src/debug/gromacs-4.0.7/src/tools/gmx_cluster.c 100644 root:root -/usr/src/debug/gromacs-4.0.7/src/tools/gmx_clustsize.c 100644 root:root -/usr/src/debug/gromacs-4.0.7/src/tools/gmx_confrms.c 100644 root:root -/usr/src/debug/gromacs-4.0.7/src/tools/gmx_covar.c 100644 root:root -/usr/src/debug/gromacs-4.0.7/src/tools/gmx_current.c 100644 root:root -/usr/src/debug/gromacs-4.0.7/src/tools/gmx_density.c 100644 root:root -/usr/src/debug/gromacs-4.0.7/src/tools/gmx_densmap.c 100644 root:root -/usr/src/debug/gromacs-4.0.7/src/tools/gmx_dielectric.c 100644 root:root -/usr/src/debug/gromacs-4.0.7/src/tools/gmx_dih.c 100644 root:root -/usr/src/debug/gromacs-4.0.7/src/tools/gmx_dipoles.c 100644 root:root -/usr/src/debug/gromacs-4.0.7/src/tools/gmx_disre.c 100644 root:root -/usr/src/debug/gromacs-4.0.7/src/tools/gmx_dist.c 100644 root:root -/usr/src/debug/gromacs-4.0.7/src/tools/gmx_dyndom.c 100644 root:root -/usr/src/debug/gromacs-4.0.7/src/tools/gmx_editconf.c 100644 root:root -/usr/src/debug/gromacs-4.0.7/src/tools/gmx_eneconv.c 100644 root:root -/usr/src/debug/gromacs-4.0.7/src/tools/gmx_enemat.c 100644 root:root -/usr/src/debug/gromacs-4.0.7/src/tools/gmx_energy.c 100644 root:root -/usr/src/debug/gromacs-4.0.7/src/tools/gmx_filter.c 100644 root:root -/usr/src/debug/gromacs-4.0.7/src/tools/gmx_genbox.c 100644 root:root -/usr/src/debug/gromacs-4.0.7/src/tools/gmx_genconf.c 100644 root:root -/usr/src/debug/gromacs-4.0.7/src/tools/gmx_genion.c 100644 root:root -/usr/src/debug/gromacs-4.0.7/src/tools/gmx_genpr.c 100644 root:root -/usr/src/debug/gromacs-4.0.7/src/tools/gmx_gyrate.c 100644 root:root 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-/usr/src/debug/gromacs-4.0.7/src/tools/gmx_sorient.c 100644 root:root -/usr/src/debug/gromacs-4.0.7/src/tools/gmx_spatial.c 100644 root:root -/usr/src/debug/gromacs-4.0.7/src/tools/gmx_spol.c 100644 root:root -/usr/src/debug/gromacs-4.0.7/src/tools/gmx_tcaf.c 100644 root:root -/usr/src/debug/gromacs-4.0.7/src/tools/gmx_traj.c 100644 root:root -/usr/src/debug/gromacs-4.0.7/src/tools/gmx_trjcat.c 100644 root:root -/usr/src/debug/gromacs-4.0.7/src/tools/gmx_trjconv.c 100644 root:root -/usr/src/debug/gromacs-4.0.7/src/tools/gmx_trjorder.c 100644 root:root -/usr/src/debug/gromacs-4.0.7/src/tools/gmx_vanhove.c 100644 root:root -/usr/src/debug/gromacs-4.0.7/src/tools/gmx_velacc.c 100644 root:root -/usr/src/debug/gromacs-4.0.7/src/tools/gmx_wham.c 100644 root:root -/usr/src/debug/gromacs-4.0.7/src/tools/gmx_wheel.c 100644 root:root -/usr/src/debug/gromacs-4.0.7/src/tools/gmx_xpm2ps.c 100644 root:root -/usr/src/debug/gromacs-4.0.7/src/tools/hxprops.c 100644 root:root -/usr/src/debug/gromacs-4.0.7/src/tools/hxprops.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/src/tools/levenmar.c 100644 root:root -/usr/src/debug/gromacs-4.0.7/src/tools/lsq.c 100644 root:root /usr/src/debug/gromacs-4.0.7/src/tools/make_edi.c 100644 root:root @@ -1643,6 +1471,2 @@ /usr/src/debug/gromacs-4.0.7/src/tools/mk_angndx.c 100644 root:root -/usr/src/debug/gromacs-4.0.7/src/tools/nsc.c 100644 root:root -/usr/src/debug/gromacs-4.0.7/src/tools/nsc.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/src/tools/polynomials.c 100644 root:root -/usr/src/debug/gromacs-4.0.7/src/tools/pp2shift.c 100644 root:root /usr/src/debug/gromacs-4.0.7/src/tools/sigeps.c 100644 root:root @@ -1656,1283 +1480,1261 @@ Requires: debug64(libX11.so.6) -Requires: debug64(libc.so.6) -Requires: debug64(libgmx.so.5) -Requires: debug64(libgmx_d.so.5) -Requires: debug64(libgmx_mpi.so.5) -Requires: debug64(libgmx_mpi_d.so.5) -Requires: debug64(libgsl.so.0) -Requires: debug64(libm.so.6) -Requires: 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/usr/src/debug/gromacs-4.0.7/src/tools/mk_angndx.c 100644 root:root 46192a0533dfd2c62ff10e8ffa9e9dbc -File: /usr/src/debug/gromacs-4.0.7/src/tools/nsc.c 100644 root:root 12b95d2e0162003494836e030e815620 -File: /usr/src/debug/gromacs-4.0.7/src/tools/nsc.h 100644 root:root ca4ea2663617c58a38e42d84a1500f41 -File: /usr/src/debug/gromacs-4.0.7/src/tools/polynomials.c 100644 root:root 5a958f4c1ae90bfdd7916b4702db9328 -File: /usr/src/debug/gromacs-4.0.7/src/tools/pp2shift.c 100644 root:root 8affa9c2397fc3c2e35f4d53bf34a51c File: /usr/src/debug/gromacs-4.0.7/src/tools/sigeps.c 100644 root:root 342d4b3faa955a42dfe42c52ed8a2452 @@ -3323,2 +2961,2 @@ File: /usr/src/debug/gromacs-4.0.7/src/tools/xpm2ps.c 100644 root:root 75ae0e413f5ac06cf53c007fb8607a47 -RPMIdentity: 0e1f92a0f5c226210a85596057e3f7d52ce547d497c316829fc51718c5acc3f88211ef91cecab71e11c48b2d3f666e551e441c0a817a02f02625610832cb5218 +RPMIdentity: 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1b6739958a527e0dbb8656f3f2ecd18ad8afb388d7f7e115b4ca1ebe7aa4d528d0a58044d7ff9a475db61541ab77ee4906efaf9ef907f6298680e6a6746784cd +RPMIdentity: c8b8985a8e84c0ddd510c54ad270f42d547ace34375c67b42e186bb575788c67ea45ab151860ef2f148f3618cd57d7bdb7e0fe1e33b5348b63ac5e88d89883f2 --- gromacs-libs-4.0.7-alt8.x86_64.rpm.repo 2012-08-11 20:29:06.000000000 +0000 +++ gromacs-libs-4.0.7-alt8.x86_64.rpm.hasher 2021-08-08 11:15:28.197914326 +0000 @@ -14,2 +14,3 @@ Requires: libc.so.6(GLIBC_2.11)(64bit) +Requires: libc.so.6(GLIBC_2.14)(64bit) Requires: libc.so.6(GLIBC_2.2.5)(64bit) @@ -19,8 +20,9 @@ Requires: libc.so.6(GLIBC_2.7)(64bit) -Requires: libfftw3.so.3()(64bit) >= set:njvWohu96CktcRqXhkPvHBAu6qHBD02ZmK8KoqUbFM1OiA0 +Requires: libfftw3.so.3()(64bit) >= set:lhRviZyOH3Z6fGJT03sbjTGvskrJcZc8YJd6Z40NTd1 Requires: rpmlib(SetVersions) -Requires: libfftw3f.so.3()(64bit) >= set:njd9yz66TfRRr1P91P6VQRZaA59LbaV5uJsDO2VZmyMt3k0 -Requires: libgsl.so.0()(64bit) >= set:qmkdQnOro2KmlIXqZDc4OU3MRrrijCppBDL3ZvW6BZbfFFC4rJx1 +Requires: libfftw3f.so.3()(64bit) >= set:lhFZpi5UEx4HyjpRfT63zoy92T3kgVbCLRWJcO8HL3 +Requires: libgsl.so.23()(64bit) >= set:qmkdQnOro2KmlIXqZDc4OU3MRrrijCppBDL3ZvW6BZbfFFC4rJx1 Requires: liblapack.so.4()(64bit) >= set:omax1kCj8 Requires: libm.so.6(GLIBC_2.2.5)(64bit) +Requires: libm.so.6(GLIBC_2.27)(64bit) Requires: libopenblas.so.0()(64bit) @@ -36,13 +38,13 @@ File: /usr/lib64/libgmx.so.5 120777 root:root libgmx.so.5.0.0 -File: /usr/lib64/libgmx.so.5.0.0 100644 root:root c80671a0333b9ba6d879d7d58a82f366 +File: /usr/lib64/libgmx.so.5.0.0 100644 root:root d14a6e7be469a94346d53f39ae6d0eb1 File: /usr/lib64/libgmx_d.so.5 120777 root:root libgmx_d.so.5.0.0 -File: /usr/lib64/libgmx_d.so.5.0.0 100644 root:root 2b616c62fdc0358fc81c3f50577b8e7d +File: /usr/lib64/libgmx_d.so.5.0.0 100644 root:root e38f692109324e19694707c04872cecb File: /usr/lib64/libgmxana.so.5 120777 root:root libgmxana.so.5.0.0 -File: /usr/lib64/libgmxana.so.5.0.0 100644 root:root 6f01b1a952550f37621cd8f444a6d950 +File: /usr/lib64/libgmxana.so.5.0.0 100644 root:root 078aa38e4f99101cbbfbdf645b655a32 File: /usr/lib64/libgmxana_d.so.5 120777 root:root libgmxana_d.so.5.0.0 -File: /usr/lib64/libgmxana_d.so.5.0.0 100644 root:root a2f8579e96187b5122d7e1226590988f +File: /usr/lib64/libgmxana_d.so.5.0.0 100644 root:root e4c1d594f06cb90e2dbb89b7c4d2ae1f File: /usr/lib64/libmd.so.5 120777 root:root libmd.so.5.0.0 -File: /usr/lib64/libmd.so.5.0.0 100644 root:root 91a2f8ff8821dd919a99b0892dc890b0 +File: /usr/lib64/libmd.so.5.0.0 100644 root:root ba27f555a0a464e30d36490e55ad89b8 File: /usr/lib64/libmd_d.so.5 120777 root:root libmd_d.so.5.0.0 -File: /usr/lib64/libmd_d.so.5.0.0 100644 root:root 492602a7c6f5d33cf233432feafbbf62 -RPMIdentity: ff5b3c804e593d057c5074950f1699779bf11086b4f870f24e9d5f7bdc915f48130962e2b60d3ba9161b4bcc8b5c5187fb2a1e92f9d9e10adeb56b104d5f7f2a +File: /usr/lib64/libmd_d.so.5.0.0 100644 root:root 8f0a87248e6cff84536ec7ce92e9a6a4 +RPMIdentity: d41dc9aa2b0c479d43489d60cc02ebbe3daacfbf4d7f6ff9bf12ec903021224b0a2b61f0c937debaefaa51c466dcd3fa3ab5f3955bcbab1b25080f7a57d88816 --- gromacs-libs-debuginfo-4.0.7-alt8.x86_64.rpm.repo 2012-08-11 20:29:06.000000000 +0000 +++ gromacs-libs-debuginfo-4.0.7-alt8.x86_64.rpm.hasher 2021-08-08 11:15:28.287914421 +0000 @@ -1,19 +1,19 @@ -/usr/lib/debug/.build-id/06 40755 root:root -/usr/lib/debug/.build-id/06/e15382cd81568cdb9cd5b6dce65160be2d3e05 120777 root:root ../../../../lib64/libgmx.so.5.0.0 -/usr/lib/debug/.build-id/06/e15382cd81568cdb9cd5b6dce65160be2d3e05.debug 120777 root:root ../../usr/lib64/libgmx.so.5.0.0.debug -/usr/lib/debug/.build-id/16 40755 root:root -/usr/lib/debug/.build-id/16/0e0e306238a5f22f3d17e1001f82e7513262d1 120777 root:root ../../../../lib64/libgmx_d.so.5.0.0 -/usr/lib/debug/.build-id/16/0e0e306238a5f22f3d17e1001f82e7513262d1.debug 120777 root:root ../../usr/lib64/libgmx_d.so.5.0.0.debug -/usr/lib/debug/.build-id/64 40755 root:root -/usr/lib/debug/.build-id/64/b9308571728aebfc20c7267556aac7023be062 120777 root:root ../../../../lib64/libmd_d.so.5.0.0 -/usr/lib/debug/.build-id/64/b9308571728aebfc20c7267556aac7023be062.debug 120777 root:root ../../usr/lib64/libmd_d.so.5.0.0.debug -/usr/lib/debug/.build-id/ce 40755 root:root -/usr/lib/debug/.build-id/ce/a135d879f2b96db552e2a23dbed46baddafdac 120777 root:root ../../../../lib64/libgmxana_d.so.5.0.0 -/usr/lib/debug/.build-id/ce/a135d879f2b96db552e2a23dbed46baddafdac.debug 120777 root:root ../../usr/lib64/libgmxana_d.so.5.0.0.debug -/usr/lib/debug/.build-id/f3 40755 root:root -/usr/lib/debug/.build-id/f3/9a210b78de9d1556f7a07465c66749aaa34f0d 120777 root:root ../../../../lib64/libgmxana.so.5.0.0 -/usr/lib/debug/.build-id/f3/9a210b78de9d1556f7a07465c66749aaa34f0d.debug 120777 root:root ../../usr/lib64/libgmxana.so.5.0.0.debug -/usr/lib/debug/.build-id/fd 40755 root:root -/usr/lib/debug/.build-id/fd/c1b931a12c38850f5a3aee67c4e789ec355475 120777 root:root ../../../../lib64/libmd.so.5.0.0 -/usr/lib/debug/.build-id/fd/c1b931a12c38850f5a3aee67c4e789ec355475.debug 120777 root:root ../../usr/lib64/libmd.so.5.0.0.debug +/usr/lib/debug/.build-id/01 40755 root:root +/usr/lib/debug/.build-id/01/d265b6c9f0003afcbd600d2246cd8a7438fc2f 120777 root:root ../../../../lib64/libgmx.so.5.0.0 +/usr/lib/debug/.build-id/01/d265b6c9f0003afcbd600d2246cd8a7438fc2f.debug 120777 root:root ../../usr/lib64/libgmx.so.5.0.0.debug +/usr/lib/debug/.build-id/59 40755 root:root +/usr/lib/debug/.build-id/59/a17e73c0fda1b2511e4011b41032c4f049a647 120777 root:root ../../../../lib64/libgmxana_d.so.5.0.0 +/usr/lib/debug/.build-id/59/a17e73c0fda1b2511e4011b41032c4f049a647.debug 120777 root:root ../../usr/lib64/libgmxana_d.so.5.0.0.debug +/usr/lib/debug/.build-id/5d 40755 root:root +/usr/lib/debug/.build-id/5d/1e9c57b5cc9b163ac99dec4608823a0268b2c2 120777 root:root ../../../../lib64/libgmxana.so.5.0.0 +/usr/lib/debug/.build-id/5d/1e9c57b5cc9b163ac99dec4608823a0268b2c2.debug 120777 root:root ../../usr/lib64/libgmxana.so.5.0.0.debug +/usr/lib/debug/.build-id/6e 40755 root:root +/usr/lib/debug/.build-id/6e/0428fc7d8b3c5872b422f98241a0242bf54895 120777 root:root ../../../../lib64/libmd.so.5.0.0 +/usr/lib/debug/.build-id/6e/0428fc7d8b3c5872b422f98241a0242bf54895.debug 120777 root:root ../../usr/lib64/libmd.so.5.0.0.debug +/usr/lib/debug/.build-id/cf 40755 root:root +/usr/lib/debug/.build-id/cf/e16485d89577799fccc6df2b7d5c79a53738e2 120777 root:root ../../../../lib64/libgmx_d.so.5.0.0 +/usr/lib/debug/.build-id/cf/e16485d89577799fccc6df2b7d5c79a53738e2.debug 120777 root:root ../../usr/lib64/libgmx_d.so.5.0.0.debug +/usr/lib/debug/.build-id/e2 40755 root:root +/usr/lib/debug/.build-id/e2/995d66f484a80b424966ff7886ae7099f28dea 120777 root:root ../../../../lib64/libmd_d.so.5.0.0 +/usr/lib/debug/.build-id/e2/995d66f484a80b424966ff7886ae7099f28dea.debug 120777 root:root ../../usr/lib64/libmd_d.so.5.0.0.debug /usr/lib/debug/usr/lib64/libgmx.so.5.0.0.debug 100644 root:root @@ -34,2 +34,4 @@ /usr/src/debug/gromacs-4.0.7/double/src/gmxlib 40755 root:root +/usr/src/debug/gromacs-4.0.7/double/src/gmxlib/gmx_blas 40755 root:root +/usr/src/debug/gromacs-4.0.7/double/src/gmxlib/gmx_lapack 40755 root:root /usr/src/debug/gromacs-4.0.7/double/src/gmxlib/nonbonded 40755 root:root @@ -103,2 +105,5 @@ /usr/src/debug/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel/nb_kernel430_f.f 100644 root:root +/usr/src/debug/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2 40755 root:root +/usr/src/debug/gromacs-4.0.7/double/src/mdlib 40755 root:root +/usr/src/debug/gromacs-4.0.7/double/src/tools 40755 root:root /usr/src/debug/gromacs-4.0.7/include 40755 root:root @@ -138,2 +143,3 @@ /usr/src/debug/gromacs-4.0.7/include/invblock.h 100644 root:root +/usr/src/debug/gromacs-4.0.7/include/macros.h 100644 root:root /usr/src/debug/gromacs-4.0.7/include/main.h 100644 root:root @@ -229,2 +235,4 @@ /usr/src/debug/gromacs-4.0.7/single/src/gmxlib 40755 root:root +/usr/src/debug/gromacs-4.0.7/single/src/gmxlib/gmx_blas 40755 root:root +/usr/src/debug/gromacs-4.0.7/single/src/gmxlib/gmx_lapack 40755 root:root /usr/src/debug/gromacs-4.0.7/single/src/gmxlib/nonbonded 40755 root:root @@ -298,2 +306,5 @@ /usr/src/debug/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel/nb_kernel430_f.f 100644 root:root +/usr/src/debug/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse 40755 root:root +/usr/src/debug/gromacs-4.0.7/single/src/mdlib 40755 root:root +/usr/src/debug/gromacs-4.0.7/single/src/tools 40755 root:root /usr/src/debug/gromacs-4.0.7/src 40755 root:root @@ -869,3 +880,3 @@ Requires: debug64(libfftw3f.so.3) -Requires: debug64(libgsl.so.0) +Requires: debug64(libgsl.so.23) Requires: debug64(liblapack.so.4) @@ -881,31 +892,31 @@ Provides: gromacs-libs-debuginfo = 4.0.7-alt8 -File: /usr/lib/debug/.build-id/06 40755 root:root -File: /usr/lib/debug/.build-id/06/e15382cd81568cdb9cd5b6dce65160be2d3e05 120777 root:root ../../../../lib64/libgmx.so.5.0.0 -File: /usr/lib/debug/.build-id/06/e15382cd81568cdb9cd5b6dce65160be2d3e05.debug 120777 root:root ../../usr/lib64/libgmx.so.5.0.0.debug -File: /usr/lib/debug/.build-id/16 40755 root:root -File: /usr/lib/debug/.build-id/16/0e0e306238a5f22f3d17e1001f82e7513262d1 120777 root:root ../../../../lib64/libgmx_d.so.5.0.0 -File: /usr/lib/debug/.build-id/16/0e0e306238a5f22f3d17e1001f82e7513262d1.debug 120777 root:root ../../usr/lib64/libgmx_d.so.5.0.0.debug -File: /usr/lib/debug/.build-id/64 40755 root:root -File: /usr/lib/debug/.build-id/64/b9308571728aebfc20c7267556aac7023be062 120777 root:root ../../../../lib64/libmd_d.so.5.0.0 -File: /usr/lib/debug/.build-id/64/b9308571728aebfc20c7267556aac7023be062.debug 120777 root:root ../../usr/lib64/libmd_d.so.5.0.0.debug -File: /usr/lib/debug/.build-id/ce 40755 root:root -File: /usr/lib/debug/.build-id/ce/a135d879f2b96db552e2a23dbed46baddafdac 120777 root:root ../../../../lib64/libgmxana_d.so.5.0.0 -File: /usr/lib/debug/.build-id/ce/a135d879f2b96db552e2a23dbed46baddafdac.debug 120777 root:root ../../usr/lib64/libgmxana_d.so.5.0.0.debug -File: /usr/lib/debug/.build-id/f3 40755 root:root -File: /usr/lib/debug/.build-id/f3/9a210b78de9d1556f7a07465c66749aaa34f0d 120777 root:root ../../../../lib64/libgmxana.so.5.0.0 -File: /usr/lib/debug/.build-id/f3/9a210b78de9d1556f7a07465c66749aaa34f0d.debug 120777 root:root ../../usr/lib64/libgmxana.so.5.0.0.debug -File: /usr/lib/debug/.build-id/fd 40755 root:root -File: /usr/lib/debug/.build-id/fd/c1b931a12c38850f5a3aee67c4e789ec355475 120777 root:root ../../../../lib64/libmd.so.5.0.0 -File: /usr/lib/debug/.build-id/fd/c1b931a12c38850f5a3aee67c4e789ec355475.debug 120777 root:root ../../usr/lib64/libmd.so.5.0.0.debug -File: /usr/lib/debug/usr/lib64/libgmx.so.5.0.0.debug 100644 root:root 499f6b6c28d6cf5f9aa31de0c1a68ad9 +File: /usr/lib/debug/.build-id/01 40755 root:root +File: /usr/lib/debug/.build-id/01/d265b6c9f0003afcbd600d2246cd8a7438fc2f 120777 root:root ../../../../lib64/libgmx.so.5.0.0 +File: /usr/lib/debug/.build-id/01/d265b6c9f0003afcbd600d2246cd8a7438fc2f.debug 120777 root:root ../../usr/lib64/libgmx.so.5.0.0.debug +File: /usr/lib/debug/.build-id/59 40755 root:root +File: /usr/lib/debug/.build-id/59/a17e73c0fda1b2511e4011b41032c4f049a647 120777 root:root ../../../../lib64/libgmxana_d.so.5.0.0 +File: /usr/lib/debug/.build-id/59/a17e73c0fda1b2511e4011b41032c4f049a647.debug 120777 root:root ../../usr/lib64/libgmxana_d.so.5.0.0.debug +File: /usr/lib/debug/.build-id/5d 40755 root:root +File: /usr/lib/debug/.build-id/5d/1e9c57b5cc9b163ac99dec4608823a0268b2c2 120777 root:root ../../../../lib64/libgmxana.so.5.0.0 +File: /usr/lib/debug/.build-id/5d/1e9c57b5cc9b163ac99dec4608823a0268b2c2.debug 120777 root:root ../../usr/lib64/libgmxana.so.5.0.0.debug +File: /usr/lib/debug/.build-id/6e 40755 root:root +File: /usr/lib/debug/.build-id/6e/0428fc7d8b3c5872b422f98241a0242bf54895 120777 root:root ../../../../lib64/libmd.so.5.0.0 +File: /usr/lib/debug/.build-id/6e/0428fc7d8b3c5872b422f98241a0242bf54895.debug 120777 root:root ../../usr/lib64/libmd.so.5.0.0.debug +File: /usr/lib/debug/.build-id/cf 40755 root:root +File: /usr/lib/debug/.build-id/cf/e16485d89577799fccc6df2b7d5c79a53738e2 120777 root:root ../../../../lib64/libgmx_d.so.5.0.0 +File: /usr/lib/debug/.build-id/cf/e16485d89577799fccc6df2b7d5c79a53738e2.debug 120777 root:root ../../usr/lib64/libgmx_d.so.5.0.0.debug +File: /usr/lib/debug/.build-id/e2 40755 root:root +File: /usr/lib/debug/.build-id/e2/995d66f484a80b424966ff7886ae7099f28dea 120777 root:root ../../../../lib64/libmd_d.so.5.0.0 +File: /usr/lib/debug/.build-id/e2/995d66f484a80b424966ff7886ae7099f28dea.debug 120777 root:root ../../usr/lib64/libmd_d.so.5.0.0.debug +File: /usr/lib/debug/usr/lib64/libgmx.so.5.0.0.debug 100644 root:root ef7765c83e9f3bcf66bc769cb79e5690 File: /usr/lib/debug/usr/lib64/libgmx.so.5.debug 120777 root:root libgmx.so.5.0.0.debug -File: /usr/lib/debug/usr/lib64/libgmx_d.so.5.0.0.debug 100644 root:root cd9257fc5ef61d9690b156cd5b0909e3 +File: /usr/lib/debug/usr/lib64/libgmx_d.so.5.0.0.debug 100644 root:root 76fa7c42360e47f66689ccac4e4bf1ca File: /usr/lib/debug/usr/lib64/libgmx_d.so.5.debug 120777 root:root libgmx_d.so.5.0.0.debug -File: /usr/lib/debug/usr/lib64/libgmxana.so.5.0.0.debug 100644 root:root a78437f33daa2affb09d68602169fa86 +File: /usr/lib/debug/usr/lib64/libgmxana.so.5.0.0.debug 100644 root:root abf007fe95bbfa2571bb8ef98621143f File: /usr/lib/debug/usr/lib64/libgmxana.so.5.debug 120777 root:root libgmxana.so.5.0.0.debug -File: /usr/lib/debug/usr/lib64/libgmxana_d.so.5.0.0.debug 100644 root:root fbea1042d475e163a3b25de36140123e +File: /usr/lib/debug/usr/lib64/libgmxana_d.so.5.0.0.debug 100644 root:root dec99b0d1f288f0331c630e9ad43f356 File: /usr/lib/debug/usr/lib64/libgmxana_d.so.5.debug 120777 root:root libgmxana_d.so.5.0.0.debug -File: /usr/lib/debug/usr/lib64/libmd.so.5.0.0.debug 100644 root:root 934ba955a48f4d0cb66339ad520cd9bf +File: /usr/lib/debug/usr/lib64/libmd.so.5.0.0.debug 100644 root:root 0c5887b386e44eee14dd0bdb40a78232 File: /usr/lib/debug/usr/lib64/libmd.so.5.debug 120777 root:root libmd.so.5.0.0.debug -File: /usr/lib/debug/usr/lib64/libmd_d.so.5.0.0.debug 100644 root:root 8fa8269d0926f106e23cbcbbfc395d75 +File: /usr/lib/debug/usr/lib64/libmd_d.so.5.0.0.debug 100644 root:root b1d79ece822851e6c9255a7dac1eb3a6 File: /usr/lib/debug/usr/lib64/libmd_d.so.5.debug 120777 root:root libmd_d.so.5.0.0.debug @@ -915,2 +926,4 @@ File: /usr/src/debug/gromacs-4.0.7/double/src/gmxlib 40755 root:root +File: /usr/src/debug/gromacs-4.0.7/double/src/gmxlib/gmx_blas 40755 root:root +File: /usr/src/debug/gromacs-4.0.7/double/src/gmxlib/gmx_lapack 40755 root:root File: /usr/src/debug/gromacs-4.0.7/double/src/gmxlib/nonbonded 40755 root:root @@ -984,2 +997,5 @@ File: /usr/src/debug/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel/nb_kernel430_f.f 100644 root:root 1fb49eb716da46519321f206f775d744 +File: /usr/src/debug/gromacs-4.0.7/double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2 40755 root:root +File: /usr/src/debug/gromacs-4.0.7/double/src/mdlib 40755 root:root +File: /usr/src/debug/gromacs-4.0.7/double/src/tools 40755 root:root File: /usr/src/debug/gromacs-4.0.7/include 40755 root:root @@ -1019,2 +1035,3 @@ File: /usr/src/debug/gromacs-4.0.7/include/invblock.h 100644 root:root c4bf8a0c74fbe2cc9cc3bebc1dae2445 +File: /usr/src/debug/gromacs-4.0.7/include/macros.h 100644 root:root a86c70a48f171d1158fcdb91b87a36db File: /usr/src/debug/gromacs-4.0.7/include/main.h 100644 root:root 96e890bfece003e88c6e98186213866d @@ -1110,2 +1127,4 @@ File: /usr/src/debug/gromacs-4.0.7/single/src/gmxlib 40755 root:root +File: /usr/src/debug/gromacs-4.0.7/single/src/gmxlib/gmx_blas 40755 root:root +File: /usr/src/debug/gromacs-4.0.7/single/src/gmxlib/gmx_lapack 40755 root:root File: /usr/src/debug/gromacs-4.0.7/single/src/gmxlib/nonbonded 40755 root:root @@ -1179,2 +1198,5 @@ File: /usr/src/debug/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel/nb_kernel430_f.f 100644 root:root 6c4c5b1b30d68b9a5b73c10024944bc3 +File: /usr/src/debug/gromacs-4.0.7/single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse 40755 root:root +File: /usr/src/debug/gromacs-4.0.7/single/src/mdlib 40755 root:root +File: /usr/src/debug/gromacs-4.0.7/single/src/tools 40755 root:root File: /usr/src/debug/gromacs-4.0.7/src 40755 root:root @@ -1746,2 +1768,2 @@ File: /usr/src/debug/gromacs-4.0.7/src/tools/pp2shift.c 100644 root:root 8affa9c2397fc3c2e35f4d53bf34a51c -RPMIdentity: 03d1fe03c4970e1d0517d6577103d3610ea5075d848bce61fd262d1d8b7ec07f7f8d5284ee36301affbce34100c61c641ccd159723f90b9bfde9bd28e9363208 +RPMIdentity: a2f07bf5dad056c3884f35f485c6322b65581c68d61867886ca31627e9ee2802cdcf8f960b11c9f0121a9267041bb64c8452b8517f2e8c1700e1e5bee853bce0 --- gromacs-mpi-4.0.7-alt8.x86_64.rpm.repo 2012-08-11 20:29:06.000000000 +0000 +++ gromacs-mpi-4.0.7-alt8.x86_64.rpm.hasher 2021-08-08 11:15:28.352914489 +0000 @@ -2,20 +2,8 @@ /usr/bin/g_mdrun_mpi_d 100755 root:root -Requires: gromacs-common = 4.0.7-alt8 Requires: /lib64/ld-linux-x86-64.so.2 -Requires: /usr/lib64/openmpi/lib/libmpi.so.1 -Requires: libc.so.6(GLIBC_2.2.5)(64bit) -Requires: libc.so.6(GLIBC_2.3.4)(64bit) -Requires: libc.so.6(GLIBC_2.4)(64bit) -Requires: libc.so.6(GLIBC_2.7)(64bit) -Requires: libgmx_mpi.so.5()(64bit) >= set:ohsOuTxkT4szlByhH3u8hMrApZdcEQbY868b0rYTQgUD0CvRIj4cHGGLm8BkTP1woJuRhrP9aukBHR8OngUbBLqumY4FxnK7pA8OsqZI5wyRNu986lgUnKnadfOpHWgnNHFWb7LqrPdmivKHv8j7JzKsZ2cG5aHmTGxZclJVfpcMvSxVFEtoJKNC0QjdahuN07q5ZtUWzVNZcaY0oY0UWqGrPa41 -Requires: rpmlib(SetVersions) -Requires: libgmx_mpi_d.so.5()(64bit) >= set:ohsOuTxkT4szlByhH3u8hMrApZdcEQbY868b0rYTQgUD0CvRIj4cHGGLm8BkTP1woJuRhrP9aukBbiCavFYlPPyD8dYOZ8ci4peJvK0kIeSb1NE22ZyTbBC7VIltEHURkZ5euRSCrIAZstZ3AFzShnKuxhJgpRWmdIDHqPvOowZIecf5J3HRdS4wuGh9Ob6UgHet6OMDZoVNZcaY0oY0UWqGrPa41 -Requires: libm.so.6(GLIBC_2.2.5)(64bit) -Requires: libmd_mpi.so.5()(64bit) >= set:mfgTAjqcF4B6GDIaXV8o5OZDA6tW5d5KpN5NRxMZqQ3EnzeVZkdwluu04hh72BiSlEmRRq9hlkct9fZ7pPlq8V0VeU8nrxCtVDmDZcHsyR8QCLXkF6LYheDZaIG9JzcQsA1RIjhK8PVMaoeFdVbhN6A1C8RR8IR2Ijj64L2wRd94P5ELNY2dhOJcVBelbs4B53jMPCkHC55v4WWNcWSrtk3BA0JMOLGnN -Requires: libmd_mpi_d.so.5()(64bit) >= set:mfgTAjqcF4B6GDIaXV8o5OZDA6tW5d5KpN5NRxMZqQ3EnzeVZkdwluu04hh72BiSlEmRRq9hlkct9fZ7pPlq8V0VeU8nrxCtVDmDZcHsyR8QCLXkF6LYheDZaIG9JzcQsA1RIjhK8PVMaoeFdVbhN6A1C8RR8IR2Ijj64L2wRd94P5ELNY2dhOJcVBelbs4B53jMPCkHC55v4WWNcWSrtk3BA0JMOLGnN -Requires: rtld(GNU_HASH) +Requires: gromacs-mpi-libs = 4.0.7-alt8 Requires: rpmlib(PayloadIsLzma) Provides: gromacs-mpi = 4.0.7-alt8 -File: /usr/bin/g_mdrun_mpi 100755 root:root 16c9449fc22afcaffe79dae1a5fddbf3 -File: /usr/bin/g_mdrun_mpi_d 100755 root:root 65448b69f0286e5eb364b548946196a6 -RPMIdentity: 5b6432522a2b26d504851de2662482d2a4ebd97dc5a2d141a92b16808da9c1c261a05f597242ce16ef63dc11584eead3e0b904271e7b7c6b2a6ae6655fec41df +File: /usr/bin/g_mdrun_mpi 100755 root:root 7c9d1e903ddee63c539e89cf472eba5f +File: /usr/bin/g_mdrun_mpi_d 100755 root:root c21ccb24aac17a4dbccbf68fbdee48cf +RPMIdentity: 493674015f5a0bfd19fd43bd7f3f7aaa776177db2679e4f3aaf569e12ca6068961d9fbfc239ad0b84d9f8a4fac2364805b6d7df65c9190c3a1bdb5d0410f8659 --- gromacs-mpi-debuginfo-4.0.7-alt8.x86_64.rpm.repo 2012-08-11 20:29:06.000000000 +0000 +++ gromacs-mpi-debuginfo-4.0.7-alt8.x86_64.rpm.hasher 2021-08-08 11:15:28.414914554 +0000 @@ -1,7 +1,7 @@ -/usr/lib/debug/.build-id/ba 40755 root:root -/usr/lib/debug/.build-id/ba/1432bd9d68733a80e5391c402feab9d8f6083f 120777 root:root ../../../../bin/g_mdrun_mpi_d -/usr/lib/debug/.build-id/ba/1432bd9d68733a80e5391c402feab9d8f6083f.debug 120777 root:root ../../usr/bin/g_mdrun_mpi_d.debug -/usr/lib/debug/.build-id/d0 40755 root:root -/usr/lib/debug/.build-id/d0/77245b67880865d8b90c0030e44677460b9bb8 120777 root:root ../../../../bin/g_mdrun_mpi -/usr/lib/debug/.build-id/d0/77245b67880865d8b90c0030e44677460b9bb8.debug 120777 root:root ../../usr/bin/g_mdrun_mpi.debug +/usr/lib/debug/.build-id/4b 40755 root:root +/usr/lib/debug/.build-id/4b/2c714a7af9253845a195df1ed106702fe75143 120777 root:root ../../../../bin/g_mdrun_mpi_d +/usr/lib/debug/.build-id/4b/2c714a7af9253845a195df1ed106702fe75143.debug 120777 root:root ../../usr/bin/g_mdrun_mpi_d.debug +/usr/lib/debug/.build-id/7d 40755 root:root +/usr/lib/debug/.build-id/7d/ab3182a4c2546e2480800e14a0d07c3e86910c 120777 root:root ../../../../bin/g_mdrun_mpi +/usr/lib/debug/.build-id/7d/ab3182a4c2546e2480800e14a0d07c3e86910c.debug 120777 root:root ../../usr/bin/g_mdrun_mpi.debug /usr/lib/debug/usr/bin/g_mdrun_mpi.debug 100644 root:root @@ -10,83 +10,9 @@ /usr/src/debug/gromacs-4.0.7/include 40755 root:root -/usr/src/debug/gromacs-4.0.7/include/checkpoint.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/confio.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/constr.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/copyrite.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/coulomb.h 100644 root:root /usr/src/debug/gromacs-4.0.7/include/dihre.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/disre.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/domdec.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/ebin.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/edsam.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/enxio.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/filenm.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/force.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/futil.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/gmx_fatal.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/gmx_random.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/gmx_wallcycle.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/gmxcomplex.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/gmxfio.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/main.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/mdatoms.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/mdebin.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/mdrun.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/mshift.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/mtop_util.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/mvdata.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/names.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/network.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/ns.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/orires.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/partdec.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/pbc.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/pme.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/pppm.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/pull.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/qmmm.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/random.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/readinp.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/shellfc.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/smalloc.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/statutil.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/strdb.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/string2.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/tgroup.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/trnio.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/txtdump.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/typedefs.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/types 40755 root:root -/usr/src/debug/gromacs-4.0.7/include/types/atoms.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/types/block.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/types/commrec.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/types/constr.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/types/energy.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/types/enums.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/types/fcdata.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/types/filenm.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/types/forcerec.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/types/graph.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/types/group.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/types/idef.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/types/ifunc.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/types/inputrec.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/types/mdatom.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/types/nblist.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/types/nrnb.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/types/ns.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/types/nsgrid.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/types/pbc.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/types/qmmmrec.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/types/shellfc.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/types/simple.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/types/state.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/types/symtab.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/types/topology.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/types/trx.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/update.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/vcm.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/vec.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/vsite.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/xtcio.h 100644 root:root -/usr/src/debug/gromacs-4.0.7/include/xvgr.h 100644 root:root +/usr/src/debug/gromacs-4.0.7/mpi-double 40755 root:root +/usr/src/debug/gromacs-4.0.7/mpi-double/src 40755 root:root +/usr/src/debug/gromacs-4.0.7/mpi-double/src/kernel 40755 root:root +/usr/src/debug/gromacs-4.0.7/mpi-single 40755 root:root +/usr/src/debug/gromacs-4.0.7/mpi-single/src 40755 root:root +/usr/src/debug/gromacs-4.0.7/mpi-single/src/kernel 40755 root:root /usr/src/debug/gromacs-4.0.7/src 40755 root:root @@ -110,102 +36,22 @@ Requires: /usr/lib/debug/lib64/ld-linux-x86-64.so.2.debug -Requires: /usr/lib/debug/usr/lib64/openmpi/lib/libmpi.so.1.debug -Requires: debug64(libc.so.6) -Requires: debug64(libgmx_mpi.so.5) -Requires: debug64(libgmx_mpi_d.so.5) -Requires: debug64(libm.so.6) -Requires: debug64(libmd_mpi.so.5) -Requires: debug64(libmd_mpi_d.so.5) +Requires: gromacs-mpi-libs-debuginfo = 4.0.7-alt8 Requires: rpmlib(PayloadIsLzma) Provides: gromacs-mpi-debuginfo = 4.0.7-alt8 -File: /usr/lib/debug/.build-id/ba 40755 root:root -File: /usr/lib/debug/.build-id/ba/1432bd9d68733a80e5391c402feab9d8f6083f 120777 root:root ../../../../bin/g_mdrun_mpi_d -File: /usr/lib/debug/.build-id/ba/1432bd9d68733a80e5391c402feab9d8f6083f.debug 120777 root:root ../../usr/bin/g_mdrun_mpi_d.debug -File: /usr/lib/debug/.build-id/d0 40755 root:root -File: /usr/lib/debug/.build-id/d0/77245b67880865d8b90c0030e44677460b9bb8 120777 root:root ../../../../bin/g_mdrun_mpi -File: /usr/lib/debug/.build-id/d0/77245b67880865d8b90c0030e44677460b9bb8.debug 120777 root:root ../../usr/bin/g_mdrun_mpi.debug -File: /usr/lib/debug/usr/bin/g_mdrun_mpi.debug 100644 root:root 4253b369ce8859cfb6545312a97e8f1c -File: /usr/lib/debug/usr/bin/g_mdrun_mpi_d.debug 100644 root:root de4f922b0721bc8feb47002f147c6a92 +File: /usr/lib/debug/.build-id/4b 40755 root:root +File: /usr/lib/debug/.build-id/4b/2c714a7af9253845a195df1ed106702fe75143 120777 root:root ../../../../bin/g_mdrun_mpi_d +File: /usr/lib/debug/.build-id/4b/2c714a7af9253845a195df1ed106702fe75143.debug 120777 root:root ../../usr/bin/g_mdrun_mpi_d.debug +File: /usr/lib/debug/.build-id/7d 40755 root:root +File: /usr/lib/debug/.build-id/7d/ab3182a4c2546e2480800e14a0d07c3e86910c 120777 root:root ../../../../bin/g_mdrun_mpi +File: /usr/lib/debug/.build-id/7d/ab3182a4c2546e2480800e14a0d07c3e86910c.debug 120777 root:root ../../usr/bin/g_mdrun_mpi.debug +File: /usr/lib/debug/usr/bin/g_mdrun_mpi.debug 100644 root:root 76d4b2442d2488fadd22f0c2d06d9da0 +File: /usr/lib/debug/usr/bin/g_mdrun_mpi_d.debug 100644 root:root 4b0c79166fb27948204f1322284abf34 File: /usr/src/debug/gromacs-4.0.7 40755 root:root File: /usr/src/debug/gromacs-4.0.7/include 40755 root:root -File: /usr/src/debug/gromacs-4.0.7/include/checkpoint.h 100644 root:root 76f6dcb80428ee9137cec2edfa081b3a -File: /usr/src/debug/gromacs-4.0.7/include/confio.h 100644 root:root 6e5f341f0e38bb602819550aa6fe3fe4 -File: 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4c38e4c0462eb71fede52bb8b4f64c4c88dacfd2a3332ccafad188b38412ae6db9f218da19895912fda6a4b9ccbf46a3e050e2151224558e6318d73dff6a982a +RPMIdentity: 217ba164294e409ccc7808103653d40b4d22bc64fd34dfcc5a4fe9d8e76d24b7c7225a46947ef142ca6624f78f269d4233193010f631bc4e71aa53fcfa5fb3a5 --- gromacs-mpi-devel-4.0.7-alt8.x86_64.rpm.repo 2012-08-11 20:29:06.000000000 +0000 +++ gromacs-mpi-devel-4.0.7-alt8.x86_64.rpm.hasher 2021-08-08 11:15:28.481914625 +0000 @@ -16,2 +16,2 @@ File: /usr/lib64/libmd_mpi_d.so 120777 root:root libmd_mpi_d.so.5.0.0 -RPMIdentity: eb6a5a0821e0ee67cc06c65e872bbf3d72a802333ecc7c3f154016d808fb8b5af7d9578bdca9de47da6737f73e29e0211dd9a835c0cee09edf9e3abee599c685 +RPMIdentity: 0dbc06f6b6ce153d5080502a7410470c52d3bde1fbb559c06795fcab017cdb7ebd07dd6fc6de836a5f60bcdf38fc673f7a1cd63790ceaeece5fc11fdcfc9a1b7 --- gromacs-mpi-libs-4.0.7-alt8.x86_64.rpm.repo 2012-08-11 20:29:06.000000000 +0000 +++ gromacs-mpi-libs-4.0.7-alt8.x86_64.rpm.hasher 2021-08-08 11:15:28.543914690 +0000 @@ -15,4 +15,5 @@ Requires: gromacs-common = 4.0.7-alt8 -Requires: /usr/lib64/openmpi/lib/libmpi.so.1 +Requires: /usr/lib64/openmpi/lib/libmpi.so.20 Requires: libc.so.6(GLIBC_2.11)(64bit) +Requires: libc.so.6(GLIBC_2.14)(64bit) Requires: libc.so.6(GLIBC_2.2.5)(64bit) @@ -22,8 +23,9 @@ Requires: libc.so.6(GLIBC_2.7)(64bit) -Requires: libfftw3.so.3()(64bit) >= set:njvWohu96CktcRqXhkPvHBAu6qHBD02ZmK8KoqUbFM1OiA0 +Requires: libfftw3.so.3()(64bit) >= set:lhRviZyOH3Z6fGJT03sbjTGvskrJcZc8YJd6Z40NTd1 Requires: rpmlib(SetVersions) -Requires: libfftw3f.so.3()(64bit) >= set:njd9yz66TfRRr1P91P6VQRZaA59LbaV5uJsDO2VZmyMt3k0 -Requires: libgsl.so.0()(64bit) >= set:qmkdQnOro2KmlIXqZDc4OU3MRrrijCppBDL3ZvW6BZbfFFC4rJx1 +Requires: libfftw3f.so.3()(64bit) >= set:lhFZpi5UEx4HyjpRfT63zoy92T3kgVbCLRWJcO8HL3 +Requires: libgsl.so.23()(64bit) >= set:qmkdQnOro2KmlIXqZDc4OU3MRrrijCppBDL3ZvW6BZbfFFC4rJx1 Requires: liblapack.so.4()(64bit) >= set:omax1kCj8 Requires: libm.so.6(GLIBC_2.2.5)(64bit) +Requires: libm.so.6(GLIBC_2.27)(64bit) Requires: libopenblas.so.0()(64bit) @@ -40,15 +42,15 @@ File: /usr/lib64/libgmx_mpi.so.5 120777 root:root libgmx_mpi.so.5.0.0 -File: /usr/lib64/libgmx_mpi.so.5.0.0 100644 root:root cd4261d9bc341bac4c98c21bc5c3fd6f +File: /usr/lib64/libgmx_mpi.so.5.0.0 100644 root:root 04f0ed294ad99d5fa7f51d5fd829ff41 File: /usr/lib64/libgmx_mpi_d.so.5 120777 root:root libgmx_mpi_d.so.5.0.0 -File: /usr/lib64/libgmx_mpi_d.so.5.0.0 100644 root:root 3cf6a40e1e33fe9999d7e4cf92a1b2e7 +File: /usr/lib64/libgmx_mpi_d.so.5.0.0 100644 root:root 92fb50fb748dd946c25cea451e96a7c6 File: /usr/lib64/libgmxana_mpi.so.5 120777 root:root libgmxana_mpi.so.5.0.0 -File: /usr/lib64/libgmxana_mpi.so.5.0.0 100644 root:root c9f1167fa5e0d3c73bd695e3521a8a22 +File: /usr/lib64/libgmxana_mpi.so.5.0.0 100644 root:root 73d62bc985fede1b5c1938718b0e53d6 File: /usr/lib64/libgmxana_mpi_d.so.5 120777 root:root libgmxana_mpi_d.so.5.0.0 -File: /usr/lib64/libgmxana_mpi_d.so.5.0.0 100644 root:root 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6f54f6ef5ddf608d71a28a72f6890b4c +File: /usr/lib64/libmd_mpi_d.so.5.0.0T 100644 root:root 515c0daaabeff827c521f0513e938133 +RPMIdentity: 40988aadeae7b4cd76843b3bf096c1251184371fde165901da7c95b35ea41e9d56cfe0a9060f50145e896991e6aa93d690511011801cfcb5c036a4bd3776e286 --- gromacs-mpi-libs-debuginfo-4.0.7-alt8.x86_64.rpm.repo 2012-08-11 20:29:06.000000000 +0000 +++ gromacs-mpi-libs-debuginfo-4.0.7-alt8.x86_64.rpm.hasher 2021-08-08 11:15:28.620914771 +0000 @@ -1,19 +1,19 @@ -/usr/lib/debug/.build-id/44 40755 root:root -/usr/lib/debug/.build-id/44/61892057a3b40b1caf79029ec3f8dc8989ca4e 120777 root:root ../../../../lib64/libmd_mpi.so.5.0.0 -/usr/lib/debug/.build-id/44/61892057a3b40b1caf79029ec3f8dc8989ca4e.debug 120777 root:root ../../usr/lib64/libmd_mpi.so.5.0.0.debug -/usr/lib/debug/.build-id/62 40755 root:root -/usr/lib/debug/.build-id/62/3b00268bbb0d4c54916ee78e8bfce2ceed1d4d 120777 root:root ../../../../lib64/libgmxana_mpi_d.so.5.0.0 -/usr/lib/debug/.build-id/62/3b00268bbb0d4c54916ee78e8bfce2ceed1d4d.debug 120777 root:root ../../usr/lib64/libgmxana_mpi_d.so.5.0.0.debug -/usr/lib/debug/.build-id/66 40755 root:root -/usr/lib/debug/.build-id/66/9407ebe59f2d879c3caf205bb840b480404c0c 120777 root:root ../../../../lib64/libgmx_mpi_d.so.5.0.0 -/usr/lib/debug/.build-id/66/9407ebe59f2d879c3caf205bb840b480404c0c.debug 120777 root:root ../../usr/lib64/libgmx_mpi_d.so.5.0.0.debug -/usr/lib/debug/.build-id/67 40755 root:root -/usr/lib/debug/.build-id/67/b5d9031cd4131d2ab2f1b44aae5f30ced6251e 120777 root:root ../../../../lib64/libgmx_mpi.so.5.0.0 -/usr/lib/debug/.build-id/67/b5d9031cd4131d2ab2f1b44aae5f30ced6251e.debug 120777 root:root ../../usr/lib64/libgmx_mpi.so.5.0.0.debug -/usr/lib/debug/.build-id/7a 40755 root:root -/usr/lib/debug/.build-id/7a/8b0782174ffe7ae0ab97d10a16b80f1696a9a8 120777 root:root ../../../../lib64/libmd_mpi_d.so.5.0.0 -/usr/lib/debug/.build-id/7a/8b0782174ffe7ae0ab97d10a16b80f1696a9a8.debug 120777 root:root ../../usr/lib64/libmd_mpi_d.so.5.0.0.debug -/usr/lib/debug/.build-id/af 40755 root:root -/usr/lib/debug/.build-id/af/b81cbead335fe56f7cfdf02aa1cab81446885c 120777 root:root ../../../../lib64/libgmxana_mpi.so.5.0.0 -/usr/lib/debug/.build-id/af/b81cbead335fe56f7cfdf02aa1cab81446885c.debug 120777 root:root ../../usr/lib64/libgmxana_mpi.so.5.0.0.debug +/usr/lib/debug/.build-id/09 40755 root:root +/usr/lib/debug/.build-id/09/36ac4a96ed6d803707b8ef47d8d67b47664278 120777 root:root ../../../../lib64/libgmxana_mpi.so.5.0.0 +/usr/lib/debug/.build-id/09/36ac4a96ed6d803707b8ef47d8d67b47664278.debug 120777 root:root ../../usr/lib64/libgmxana_mpi.so.5.0.0.debug +/usr/lib/debug/.build-id/1a 40755 root:root +/usr/lib/debug/.build-id/1a/9f9dd5a8616bfa9bdfd34e24d8b2699cef44e2 120777 root:root ../../../../lib64/libgmx_mpi.so.5.0.0 +/usr/lib/debug/.build-id/1a/9f9dd5a8616bfa9bdfd34e24d8b2699cef44e2.debug 120777 root:root ../../usr/lib64/libgmx_mpi.so.5.0.0.debug +/usr/lib/debug/.build-id/41 40755 root:root +/usr/lib/debug/.build-id/41/0842c96da4fd44facb232f09314fc10712e3fe 120777 root:root ../../../../lib64/libmd_mpi_d.so.5.0.0 +/usr/lib/debug/.build-id/41/0842c96da4fd44facb232f09314fc10712e3fe.debug 120777 root:root ../../usr/lib64/libmd_mpi_d.so.5.0.0.debug +/usr/lib/debug/.build-id/8a 40755 root:root +/usr/lib/debug/.build-id/8a/773f75472b8b46aa124b8bfa693f58e3a3fa8c 120777 root:root ../../../../lib64/libgmxana_mpi_d.so.5.0.0 +/usr/lib/debug/.build-id/8a/773f75472b8b46aa124b8bfa693f58e3a3fa8c.debug 120777 root:root ../../usr/lib64/libgmxana_mpi_d.so.5.0.0.debug +/usr/lib/debug/.build-id/ae 40755 root:root +/usr/lib/debug/.build-id/ae/283648942027a71bac18bfd1d5f50573423f14 120777 root:root ../../../../lib64/libgmx_mpi_d.so.5.0.0 +/usr/lib/debug/.build-id/ae/283648942027a71bac18bfd1d5f50573423f14.debug 120777 root:root ../../usr/lib64/libgmx_mpi_d.so.5.0.0.debug +/usr/lib/debug/.build-id/d1 40755 root:root +/usr/lib/debug/.build-id/d1/e24cd604e0d5f2b855de8825f0d6ce2e761ef0 120777 root:root ../../../../lib64/libmd_mpi.so.5.0.0 +/usr/lib/debug/.build-id/d1/e24cd604e0d5f2b855de8825f0d6ce2e761ef0.debug 120777 root:root ../../usr/lib64/libmd_mpi.so.5.0.0.debug /usr/lib/debug/usr/lib64/libgmx_mpi.so.5.0.0.debug 100644 root:root @@ -69,2 +69,3 @@ /usr/src/debug/gromacs-4.0.7/include/invblock.h 100644 root:root +/usr/src/debug/gromacs-4.0.7/include/macros.h 100644 root:root /usr/src/debug/gromacs-4.0.7/include/main.h 100644 root:root @@ -160,2 +161,4 @@ /usr/src/debug/gromacs-4.0.7/mpi-double/src/gmxlib 40755 root:root +/usr/src/debug/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas 40755 root:root +/usr/src/debug/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack 40755 root:root /usr/src/debug/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded 40755 root:root @@ -229,2 +232,5 @@ /usr/src/debug/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel/nb_kernel430_f.f 100644 root:root +/usr/src/debug/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2 40755 root:root +/usr/src/debug/gromacs-4.0.7/mpi-double/src/mdlib 40755 root:root +/usr/src/debug/gromacs-4.0.7/mpi-double/src/tools 40755 root:root /usr/src/debug/gromacs-4.0.7/mpi-single 40755 root:root @@ -232,2 +238,4 @@ /usr/src/debug/gromacs-4.0.7/mpi-single/src/gmxlib 40755 root:root +/usr/src/debug/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas 40755 root:root +/usr/src/debug/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack 40755 root:root /usr/src/debug/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded 40755 root:root @@ -301,2 +309,5 @@ /usr/src/debug/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel/nb_kernel430_f.f 100644 root:root +/usr/src/debug/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse 40755 root:root +/usr/src/debug/gromacs-4.0.7/mpi-single/src/mdlib 40755 root:root +/usr/src/debug/gromacs-4.0.7/mpi-single/src/tools 40755 root:root /usr/src/debug/gromacs-4.0.7/src 40755 root:root @@ -869,3 +880,3 @@ Requires: gromacs-mpi-libs = 4.0.7-alt8 -Requires: /usr/lib/debug/usr/lib64/openmpi/lib/libmpi.so.1.debug +Requires: /usr/lib/debug/usr/lib64/openmpi/lib/libmpi.so.20.debug Requires: debug64(libc.so.6) @@ -873,3 +884,3 @@ Requires: debug64(libfftw3f.so.3) -Requires: debug64(libgsl.so.0) +Requires: debug64(libgsl.so.23) Requires: debug64(liblapack.so.4) @@ -886,33 +897,33 @@ Provides: gromacs-mpi-libs-debuginfo = 4.0.7-alt8 -File: /usr/lib/debug/.build-id/44 40755 root:root -File: /usr/lib/debug/.build-id/44/61892057a3b40b1caf79029ec3f8dc8989ca4e 120777 root:root ../../../../lib64/libmd_mpi.so.5.0.0 -File: /usr/lib/debug/.build-id/44/61892057a3b40b1caf79029ec3f8dc8989ca4e.debug 120777 root:root ../../usr/lib64/libmd_mpi.so.5.0.0.debug -File: /usr/lib/debug/.build-id/62 40755 root:root -File: /usr/lib/debug/.build-id/62/3b00268bbb0d4c54916ee78e8bfce2ceed1d4d 120777 root:root ../../../../lib64/libgmxana_mpi_d.so.5.0.0 -File: /usr/lib/debug/.build-id/62/3b00268bbb0d4c54916ee78e8bfce2ceed1d4d.debug 120777 root:root ../../usr/lib64/libgmxana_mpi_d.so.5.0.0.debug -File: /usr/lib/debug/.build-id/66 40755 root:root -File: /usr/lib/debug/.build-id/66/9407ebe59f2d879c3caf205bb840b480404c0c 120777 root:root ../../../../lib64/libgmx_mpi_d.so.5.0.0 -File: /usr/lib/debug/.build-id/66/9407ebe59f2d879c3caf205bb840b480404c0c.debug 120777 root:root ../../usr/lib64/libgmx_mpi_d.so.5.0.0.debug -File: /usr/lib/debug/.build-id/67 40755 root:root -File: /usr/lib/debug/.build-id/67/b5d9031cd4131d2ab2f1b44aae5f30ced6251e 120777 root:root ../../../../lib64/libgmx_mpi.so.5.0.0 -File: /usr/lib/debug/.build-id/67/b5d9031cd4131d2ab2f1b44aae5f30ced6251e.debug 120777 root:root ../../usr/lib64/libgmx_mpi.so.5.0.0.debug -File: /usr/lib/debug/.build-id/7a 40755 root:root -File: /usr/lib/debug/.build-id/7a/8b0782174ffe7ae0ab97d10a16b80f1696a9a8 120777 root:root ../../../../lib64/libmd_mpi_d.so.5.0.0 -File: 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/usr/lib/debug/.build-id/ae/283648942027a71bac18bfd1d5f50573423f14 120777 root:root ../../../../lib64/libgmx_mpi_d.so.5.0.0 +File: /usr/lib/debug/.build-id/ae/283648942027a71bac18bfd1d5f50573423f14.debug 120777 root:root ../../usr/lib64/libgmx_mpi_d.so.5.0.0.debug +File: /usr/lib/debug/.build-id/d1 40755 root:root +File: /usr/lib/debug/.build-id/d1/e24cd604e0d5f2b855de8825f0d6ce2e761ef0 120777 root:root ../../../../lib64/libmd_mpi.so.5.0.0 +File: /usr/lib/debug/.build-id/d1/e24cd604e0d5f2b855de8825f0d6ce2e761ef0.debug 120777 root:root ../../usr/lib64/libmd_mpi.so.5.0.0.debug +File: /usr/lib/debug/usr/lib64/libgmx_mpi.so.5.0.0.debug 100644 root:root 424c83c95aa19186c0db2b288169fddd File: /usr/lib/debug/usr/lib64/libgmx_mpi.so.5.debug 120777 root:root libgmx_mpi.so.5.0.0.debug -File: /usr/lib/debug/usr/lib64/libgmx_mpi_d.so.5.0.0.debug 100644 root:root a01e13646820920930460794cec3ae79 +File: /usr/lib/debug/usr/lib64/libgmx_mpi_d.so.5.0.0.debug 100644 root:root 344ba7a8546e14f0ee16ee47e1562666 File: /usr/lib/debug/usr/lib64/libgmx_mpi_d.so.5.debug 120777 root:root libgmx_mpi_d.so.5.0.0.debug -File: /usr/lib/debug/usr/lib64/libgmxana_mpi.so.5.0.0.debug 100644 root:root 72b1e2caaf69d3fbd55abc37cd8a1997 +File: /usr/lib/debug/usr/lib64/libgmxana_mpi.so.5.0.0.debug 100644 root:root e3aa41e313a8a4320d44549b47299e68 File: /usr/lib/debug/usr/lib64/libgmxana_mpi.so.5.debug 120777 root:root libgmxana_mpi.so.5.0.0.debug -File: /usr/lib/debug/usr/lib64/libgmxana_mpi_d.so.5.0.0.debug 100644 root:root ce18ee00c16617004f2cd20dbfaccf95 +File: /usr/lib/debug/usr/lib64/libgmxana_mpi_d.so.5.0.0.debug 100644 root:root 4e306a1c21c513069546131fa650c8d5 File: /usr/lib/debug/usr/lib64/libgmxana_mpi_d.so.5.debug 120777 root:root libgmxana_mpi_d.so.5.0.0.debug -File: /usr/lib/debug/usr/lib64/libmd_mpi.so.5.0.0.debug 100644 root:root 74ea0f6139806dcf2063b2da449745d3 -File: /usr/lib/debug/usr/lib64/libmd_mpi.so.5.0.0T.debug 100644 root:root 74ea0f6139806dcf2063b2da449745d3 +File: /usr/lib/debug/usr/lib64/libmd_mpi.so.5.0.0.debug 100644 root:root 82bd569c9e7dd28d053c471d7c62ebe2 +File: /usr/lib/debug/usr/lib64/libmd_mpi.so.5.0.0T.debug 100644 root:root 82bd569c9e7dd28d053c471d7c62ebe2 File: /usr/lib/debug/usr/lib64/libmd_mpi.so.5.debug 120777 root:root libmd_mpi.so.5.0.0T.debug -File: /usr/lib/debug/usr/lib64/libmd_mpi_d.so.5.0.0.debug 100644 root:root 25c5a181c3e77fbe68a6ccfb28e0ca31 -File: /usr/lib/debug/usr/lib64/libmd_mpi_d.so.5.0.0T.debug 100644 root:root 25c5a181c3e77fbe68a6ccfb28e0ca31 +File: /usr/lib/debug/usr/lib64/libmd_mpi_d.so.5.0.0.debug 100644 root:root b42f0033475ee445c1ee2017dce6c626 +File: /usr/lib/debug/usr/lib64/libmd_mpi_d.so.5.0.0T.debug 100644 root:root b42f0033475ee445c1ee2017dce6c626 File: /usr/lib/debug/usr/lib64/libmd_mpi_d.so.5.debug 120777 root:root libmd_mpi_d.so.5.0.0T.debug @@ -955,2 +966,3 @@ File: /usr/src/debug/gromacs-4.0.7/include/invblock.h 100644 root:root c4bf8a0c74fbe2cc9cc3bebc1dae2445 +File: /usr/src/debug/gromacs-4.0.7/include/macros.h 100644 root:root a86c70a48f171d1158fcdb91b87a36db File: /usr/src/debug/gromacs-4.0.7/include/main.h 100644 root:root 96e890bfece003e88c6e98186213866d @@ -1046,2 +1058,4 @@ File: /usr/src/debug/gromacs-4.0.7/mpi-double/src/gmxlib 40755 root:root +File: /usr/src/debug/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_blas 40755 root:root +File: /usr/src/debug/gromacs-4.0.7/mpi-double/src/gmxlib/gmx_lapack 40755 root:root File: /usr/src/debug/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded 40755 root:root @@ -1115,2 +1129,5 @@ File: /usr/src/debug/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel/nb_kernel430_f.f 100644 root:root 1fb49eb716da46519321f206f775d744 +File: /usr/src/debug/gromacs-4.0.7/mpi-double/src/gmxlib/nonbonded/nb_kernel_x86_64_sse2 40755 root:root +File: /usr/src/debug/gromacs-4.0.7/mpi-double/src/mdlib 40755 root:root +File: /usr/src/debug/gromacs-4.0.7/mpi-double/src/tools 40755 root:root File: /usr/src/debug/gromacs-4.0.7/mpi-single 40755 root:root @@ -1118,2 +1135,4 @@ File: /usr/src/debug/gromacs-4.0.7/mpi-single/src/gmxlib 40755 root:root +File: /usr/src/debug/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_blas 40755 root:root +File: /usr/src/debug/gromacs-4.0.7/mpi-single/src/gmxlib/gmx_lapack 40755 root:root File: /usr/src/debug/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded 40755 root:root @@ -1187,2 +1206,5 @@ File: /usr/src/debug/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel/nb_kernel430_f.f 100644 root:root 6c4c5b1b30d68b9a5b73c10024944bc3 +File: /usr/src/debug/gromacs-4.0.7/mpi-single/src/gmxlib/nonbonded/nb_kernel_x86_64_sse 40755 root:root +File: /usr/src/debug/gromacs-4.0.7/mpi-single/src/mdlib 40755 root:root +File: /usr/src/debug/gromacs-4.0.7/mpi-single/src/tools 40755 root:root File: /usr/src/debug/gromacs-4.0.7/src 40755 root:root @@ -1754,2 +1776,2 @@ File: /usr/src/debug/gromacs-4.0.7/src/tools/pp2shift.c 100644 root:root 8affa9c2397fc3c2e35f4d53bf34a51c -RPMIdentity: 040c33822e3ada01ef08afaa984ecf7c91b4cb7b54b4a1fa614a504c4a35d584232b49984787a610b2631239391450762e93699af68a383c0a251f3adf1569ec +RPMIdentity: eb451e46452ceb7b91ccebf9dbe7e4c98f79aefee65f65cb38244e7ece45cd133ca7f76fdec9eda213515cec97fa6af480379c183c02e58e8933fa28c25b65b0 --- gromacs-shell-extensions-4.0.7-alt8.x86_64.rpm.repo 2012-08-11 20:29:06.000000000 +0000 +++ gromacs-shell-extensions-4.0.7-alt8.x86_64.rpm.hasher 2021-08-08 11:15:28.681914836 +0000 @@ -17,2 +17,2 @@ File: /usr/share/zsh/site-functions/gromacs 100644 root:root d6549519fa765aba8b33a97ad6960a7a -RPMIdentity: 31bf855359e3c5d3a0c0f5ac915550882ac873a4148cf953c3f5054895aacab7719861f79c1bb1b5175f70a478b3102ffde3143559fa03d86fbc256e03188251 +RPMIdentity: 804428de6cc5a95f8a5f5733dc6326aa1c5f62d05f7beadea921bf04be2a108209aba123458dd22addced5a17379e44cdd019fbdb93983c11a40f73db7045c3d --- gromacs-tutor-4.0.7-alt8.noarch.rpm.repo 2012-08-11 20:29:04.000000000 +0000 +++ gromacs-tutor-4.0.7-alt8.noarch.rpm.hasher 2021-08-08 11:15:28.742914900 +0000 @@ -87,2 +87,2 @@ File: /usr/share/gromacs/tutor/water/topol.top 100644 root:root 898507f42840fc4fe65d59bddd6fd899 -RPMIdentity: ac35de37056248da963f467c474c08263a1564dc21f9acc54370d3d1aba166b8bfc2e848c3c004f7a4bcdccc8f499569c67d3b7a4984f10dad6adbac886c53dd +RPMIdentity: ba28c587cd9d4026023b8791f5818fc9e25c339b602714270aa46d0bfb2503d8a01110ad39ef62ea136e56efb5174d9f40d6772c9f3eaf8e9e98221841d680ce