<86>Jan 17 08:50:38 userdel[1648349]: delete user 'rooter'
<86>Jan 17 08:50:38 userdel[1648349]: removed group 'rooter' owned by 'rooter'
<86>Jan 17 08:50:38 userdel[1648349]: removed shadow group 'rooter' owned by 'rooter'
<86>Jan 17 08:50:38 groupadd[1648386]: group added to /etc/group: name=rooter, GID=660
<86>Jan 17 08:50:38 groupadd[1648386]: group added to /etc/gshadow: name=rooter
<86>Jan 17 08:50:38 groupadd[1648386]: new group: name=rooter, GID=660
<86>Jan 17 08:50:38 useradd[1648404]: new user: name=rooter, UID=660, GID=660, home=/root, shell=/bin/bash
<86>Jan 17 08:50:38 userdel[1648428]: delete user 'builder'
<86>Jan 17 08:50:38 userdel[1648428]: removed group 'builder' owned by 'builder'
<86>Jan 17 08:50:38 userdel[1648428]: removed shadow group 'builder' owned by 'builder'
<86>Jan 17 08:50:38 groupadd[1648450]: group added to /etc/group: name=builder, GID=661
<86>Jan 17 08:50:38 groupadd[1648450]: group added to /etc/gshadow: name=builder
<86>Jan 17 08:50:38 groupadd[1648450]: new group: name=builder, GID=661
<86>Jan 17 08:50:38 useradd[1648485]: new user: name=builder, UID=661, GID=661, home=/usr/src, shell=/bin/bash
<13>Jan 17 08:50:44 rpmi: libxkbcommon-0.8.4-alt1 sisyphus+222759.100.1.1 1551009799 installed
<13>Jan 17 08:50:44 rpmi: libexpat-2.2.10-alt1 p9+261554.100.1.1 1605103337 installed
<13>Jan 17 08:50:44 rpmi: libpng16-1.6.36-alt1 sisyphus+219478.100.1.1 1547633314 installed
<13>Jan 17 08:50:44 rpmi: libglvnd-7:1.3.1-alt0.p9 p9+251991.160.19.1 1590834872 installed
<13>Jan 17 08:50:44 rpmi: qt5-base-common-5.12.9-alt1 p9+258569.200.6.1 1602528343 installed
<13>Jan 17 08:50:44 rpmi: libsqlite3-3.33.0-alt1 p9+258834.40.2.1 1601365057 installed
<13>Jan 17 08:50:44 rpmi: python-module-sphinxcontrib-2.1.1-alt2.1.2 sisyphus+227529.1100.1.2 1555924423 installed
<13>Jan 17 08:50:44 rpmi: zlib-devel-1.2.11-alt1 sisyphus+221902.6000.4.1 1550601058 installed
<13>Jan 17 08:50:44 rpmi: libopenblas-0.2.20-alt2 p9+229427.100.2.1 1558020066 installed
<13>Jan 17 08:50:44 rpmi: libmtdev-1.1.5-alt1 sisyphus+220715.100.1.1 1549364509 installed
<13>Jan 17 08:50:44 rpmi: udev-rules-1:243.9-alt1 p9+258476.300.4.1 1601997124 installed
<13>Jan 17 08:50:44 rpmi: libgraphite2-1.3.13-alt2 sisyphus+226799.100.1.1 1554648241 installed
<13>Jan 17 08:50:44 rpmi: libharfbuzz-2.6.2-alt1 p9+238790.200.1.1 1570435826 installed
<13>Jan 17 08:50:44 rpmi: libfreetype-2.10.1-alt1.1.p9.1 p9+260179.200.3.1 1603971407 installed
<13>Jan 17 08:50:44 rpmi: libICE-1.0.9-alt1 1409902721 installed
<13>Jan 17 08:50:44 rpmi: xorg-proto-devel-2018.4-alt3 1527685079 installed
<13>Jan 17 08:50:45 rpmi: libwayland-server-1.18.0-alt1 p9+260591.100.12.1 1606212861 installed
<13>Jan 17 08:50:45 rpmi: libicu65-1:6.5.1-alt1 p9+247371.14560.149.1 1590835689 installed
<13>Jan 17 08:50:45 rpmi: libgdbm-1.8.3-alt10 1454943334 installed
<13>Jan 17 08:50:45 rpmi: icu-utils-1:6.5.1-alt1 p9+247371.14560.149.1 1590835689 installed
<13>Jan 17 08:50:45 rpmi: libicu-devel-1:6.5.1-alt1 p9+247371.14560.149.1 1590835689 installed
<13>Jan 17 08:50:45 rpmi: libSM-1.2.3-alt1 sisyphus+226734.100.2.1 1554586158 installed
<13>Jan 17 08:50:45 rpmi: fontconfig-2.13.1-alt1 p9+247340.200.3.1 1583400517 installed
Updating fonts cache: <29>Jan 17 08:50:46 fontconfig: Updating fonts cache: succeeded
[ DONE ]
<13>Jan 17 08:50:46 rpmi: libgraphite2-devel-1.3.13-alt2 sisyphus+226799.100.1.1 1554648241 installed
<13>Jan 17 08:50:46 rpmi: rpm-macros-qt5-5.12.9-alt1 p9+258569.200.6.1 1602528120 installed
<13>Jan 17 08:50:46 rpmi: libOpenGL-7:1.3.1-alt0.p9 p9+251991.160.19.1 1590834872 installed
<13>Jan 17 08:50:47 rpmi: libxkbcommon-devel-0.8.4-alt1 sisyphus+222759.100.1.1 1551009799 installed
<13>Jan 17 08:50:47 rpmi: xxd-4:8.2.0011-alt1 p9+247371.64100.170.1 1592233484 installed
<13>Jan 17 08:50:47 rpmi: python-module-OpenGL_accelerate-3.1.3b1-alt1 sisyphus+225625.51400.91.1 1555362110 installed
<13>Jan 17 08:50:47 rpmi: vulkan-filesystem-1.2.141-alt1.1 p9+260591.340.12.1 1606214283 installed
<13>Jan 17 08:50:47 rpmi: libvulkan1-1.2.141-alt1.1 p9+260591.340.12.1 1606214415 installed
<13>Jan 17 08:50:47 rpmi: libts0-1.22-alt3 p9+258569.74.6.1 1602527040 installed
<13>Jan 17 08:50:47 rpmi: libproxy-0.4.15-alt5 p9+261541.200.3.1 1605276967 installed
<13>Jan 17 08:50:47 rpmi: libpcre2-10.33-alt1.1 sisyphus+227856.100.1.2 1555786378 installed
<13>Jan 17 08:50:47 rpmi: libqt5-core-5.12.9-alt1 p9+258569.200.6.1 1602528343 installed
<13>Jan 17 08:50:47 rpmi: libqt5-concurrent-5.12.9-alt1 p9+258569.200.6.1 1602528343 installed
<13>Jan 17 08:50:47 rpmi: libqt5-sql-5.12.9-alt1 p9+258569.200.6.1 1602528343 installed
<13>Jan 17 08:50:47 rpmi: libqt5-test-5.12.9-alt1 p9+258569.200.6.1 1602528343 installed
<13>Jan 17 08:50:47 rpmi: libqt5-xml-5.12.9-alt1 p9+258569.200.6.1 1602528343 installed
<13>Jan 17 08:50:47 rpmi: python-module-imagesize-1.1.0-alt1 sisyphus+229015.100.2.1 1557233756 installed
<13>Jan 17 08:50:47 rpmi: python-sphinx-objects.inv-1:2.3.8.20190514-alt1 p9+229421.100.1.1 1557927689 installed
<13>Jan 17 08:50:47 rpmi: libxapian-1.4.15-alt1 p9+258827.100.1.1 1601305423 installed
<13>Jan 17 08:50:47 rpmi: python-module-google-0.4.2-alt2.1 sisyphus+228356.1500.3.1 1556633057 installed
<13>Jan 17 08:50:47 rpmi: python-module-enum34-1.1.6-alt3 1527251693 installed
<13>Jan 17 08:50:47 rpmi: python-module-markupsafe-1.1.1-alt1 p9+254838.60.14.1 1602882139 installed
<13>Jan 17 08:50:47 rpmi: libnumpy-1:1.15.4-alt5 p9+255957.40.47.1 1599835883 installed
<13>Jan 17 08:50:47 rpmi: libmsgpack-3.1.1-alt2 sisyphus+229258.20.3.1 1557672199 installed
<13>Jan 17 08:50:47 rpmi: libmsgpack-devel-3.1.1-alt2 sisyphus+229258.20.3.1 1557672199 installed
<13>Jan 17 08:50:47 rpmi: libxblas-1.0.248-alt1.3 sisyphus+229150.100.1.1 1557388786 installed
<13>Jan 17 08:50:47 rpmi: libjpeg-2:2.0.2-alt1 sisyphus+226996.100.1.1 1554902907 installed
<13>Jan 17 08:50:47 rpmi: libwacom-data-1.1-alt1 p9+238204.300.1.1 1569496607 installed
<13>Jan 17 08:50:48 rpmi: libicu64-1:6.4.2-alt2 p9+247371.14540.149.1 1590835209 installed
<13>Jan 17 08:50:48 rpmi: libharfbuzz-icu-2.6.2-alt1 p9+238790.200.1.1 1570435826 installed
<13>Jan 17 08:50:48 rpmi: libgudev-1:233-alt1 p9+235498.500.2.1 1565021367 installed
<13>Jan 17 08:50:48 rpmi: libwacom-1.1-alt1 p9+238204.300.1.1 1569496628 installed
<13>Jan 17 08:50:48 rpmi: libquadmath0-8.4.1-alt0.p9.1 p9+247559.100.2.1 1585587912 installed
<13>Jan 17 08:50:48 rpmi: libgfortran5-8.4.1-alt0.p9.1 p9+247559.100.2.1 1585587912 installed
<13>Jan 17 08:50:48 rpmi: liblapack-1:3.8.0-alt3 sisyphus+221521.100.1.1 1550134903 installed
<13>Jan 17 08:50:48 rpmi: libevdev-1.8.0-alt1 p9+236994.200.1.1 1567358362 installed
<13>Jan 17 08:50:48 rpmi: libinput-1.14.1-alt1 p9+236994.300.1.1 1567358447 installed
<13>Jan 17 08:50:48 rpmi: liblz4-1:1.9.2-alt1 p9+238696.500.1.1 1570228299 installed
<13>Jan 17 08:50:48 rpmi: libgpg-error-1.36-alt1 p9+261942.140.4.1 1606237675 installed
<13>Jan 17 08:50:48 rpmi: libgcrypt20-1.8.5-alt3 p9+261942.200.4.1 1606237923 installed
<13>Jan 17 08:50:48 rpmi: libsystemd-1:243.9-alt1 p9+258476.300.4.1 1601997172 installed
<13>Jan 17 08:50:48 rpmi: libdbus-1.12.16-alt2 p9+240607.100.1.1 1573553687 installed
<13>Jan 17 08:50:48 rpmi: libavahi-0.8-alt1 p9+258828.100.4.1 1601912063 installed
<13>Jan 17 08:50:48 rpmi: libcups-2.3.1-alt2 p9+257413.1500.9.1 1610356441 installed
<13>Jan 17 08:50:48 rpmi: libqt5-dbus-5.12.9-alt1 p9+258569.200.6.1 1602528343 installed
<13>Jan 17 08:50:48 rpmi: libxslt-1.1.34-alt1.p9.1 p9+261811.300.3.1 1605513919 installed
<13>Jan 17 08:50:48 rpmi: libxshmfence-1.3-alt1 sisyphus+223149.1000.2.1 1551268571 installed
<13>Jan 17 08:50:48 rpmi: libX11-locales-3:1.6.7-alt2 p9+258208.100.1.1 1600333167 installed
<13>Jan 17 08:50:48 rpmi: libXdmcp-1.1.3-alt1 sisyphus+225206.600.1.2 1552949353 installed
<13>Jan 17 08:50:49 rpmi: libXau-1.0.9-alt1 sisyphus+223149.200.2.1 1551268152 installed
<13>Jan 17 08:50:49 rpmi: libxcb-1.13.1-alt1 sisyphus+226527.100.2.2 1554593801 installed
<13>Jan 17 08:50:49 rpmi: libX11-3:1.6.7-alt2 p9+258208.100.1.1 1600333162 installed
<13>Jan 17 08:50:49 rpmi: libXext-1.3.4-alt1 sisyphus+225206.700.1.2 1552949429 installed
<13>Jan 17 08:50:49 rpmi: libXxf86vm-1.1.4-alt2 1527672187 installed
<13>Jan 17 08:50:49 rpmi: libXrender-0.9.10-alt1 p9+261891.200.2.1 1606149111 installed
<13>Jan 17 08:50:50 rpmi: libxcb-devel-1.13.1-alt1 sisyphus+226527.100.2.2 1554593801 installed
<13>Jan 17 08:50:50 rpmi: libX11-devel-3:1.6.7-alt2 p9+258208.100.1.1 1600333162 installed
<13>Jan 17 08:50:50 rpmi: libXrandr-1.5.2-alt1 sisyphus+225206.1300.1.2 1552949710 installed
<13>Jan 17 08:50:50 rpmi: libXi-1.7.9-alt2 sisyphus+226377.100.1.2 1554260260 installed
<13>Jan 17 08:50:50 rpmi: libXdamage-1.1.5-alt1 sisyphus+225206.500.1.2 1552949286 installed
<13>Jan 17 08:50:50 rpmi: libXfixes-5.0.3-alt1 sisyphus+226736.100.2.2 1554614841 installed
<13>Jan 17 08:50:50 rpmi: libxcbutil-icccm-0.4.1-alt2 sisyphus+229000.100.1.1 1557152221 installed
<13>Jan 17 08:50:50 rpmi: libxcbutil-1:0.4.0-alt1 1413392888 installed
<13>Jan 17 08:50:50 rpmi: libxcbutil-image-0.4.0-alt1 1446204182 installed
<13>Jan 17 08:50:50 rpmi: libxcbutil-keysyms-0.4.0-alt1 1446204124 installed
<13>Jan 17 08:50:50 rpmi: libxcb-render-util-0.3.9-alt3 sisyphus+222674.100.1.1 1550989886 installed
<13>Jan 17 08:50:50 rpmi: libxkbcommon-x11-0.8.4-alt1 sisyphus+222759.100.1.1 1551009799 installed
<13>Jan 17 08:50:50 rpmi: libwayland-client-1.18.0-alt1 p9+260591.100.12.1 1606212861 installed
<13>Jan 17 08:50:50 rpmi: libpciaccess-1:0.14-alt1 1528969252 installed
<13>Jan 17 08:50:50 rpmi: libdrm-1:2.4.102-alt1 p9+252863.100.1.1 1591372623 installed
<13>Jan 17 08:50:50 rpmi: libGLX-mesa-4:20.1.8-alt1 p9+260591.240.12.1 1606213250 installed
<13>Jan 17 08:50:50 rpmi: libgbm-4:20.1.8-alt1 p9+260591.240.12.1 1606213250 installed
<13>Jan 17 08:50:50 rpmi: libEGL-mesa-4:20.1.8-alt1 p9+260591.240.12.1 1606213250 installed
<13>Jan 17 08:50:50 rpmi: libEGL-7:1.3.1-alt0.p9 p9+251991.160.19.1 1590834872 installed
<13>Jan 17 08:50:50 rpmi: libGLX-7:1.3.1-alt0.p9 p9+251991.160.19.1 1590834872 installed
<13>Jan 17 08:50:50 rpmi: libGL-7:1.3.1-alt0.p9 p9+251991.160.19.1 1590834872 installed
<13>Jan 17 08:50:50 rpmi: libglvnd-devel-7:1.3.1-alt0.p9 p9+251991.160.19.1 1590834872 installed
<13>Jan 17 08:50:50 rpmi: libEGL-devel-4:20.1.8-alt1 p9+260591.240.12.1 1606213250 installed
<13>Jan 17 08:50:50 rpmi: libGL-devel-4:20.1.8-alt1 p9+260591.240.12.1 1606213250 installed
<13>Jan 17 08:50:50 rpmi: libGLU-4:9.0.1-alt1 p9+251991.3000.19.1 1590835916 installed
<13>Jan 17 08:50:50 rpmi: libGLU-devel-4:9.0.1-alt1 p9+251991.3000.19.1 1590835916 installed
<13>Jan 17 08:50:50 rpmi: libGLEW2.1-2.1.0-alt4 sisyphus+226787.100.1.1 1554586973 installed
<13>Jan 17 08:50:50 rpmi: libfreeglut-3.0.0-alt3 sisyphus+226742.100.2.3 1554619771 installed
<13>Jan 17 08:50:50 rpmi: xml-utils-1:2.9.10-alt4 p9+261133.100.1.1 1604676314 installed
<13>Jan 17 08:50:50 rpmi: rpm-build-gir-0.7.3-alt2 p9+234356.40.2.1 1562933848 installed
<13>Jan 17 08:50:50 rpmi: gcc-c++-common-1.4.23-alt1 sisyphus+221902.2500.4.1 1550596716 installed
<13>Jan 17 08:50:51 rpmi: libstdc++8-devel-8.4.1-alt0.p9.1 p9+247559.100.2.1 1585587912 installed
<13>Jan 17 08:50:52 rpmi: gcc8-c++-8.4.1-alt0.p9.1 p9+247559.100.2.1 1585587912 installed
<13>Jan 17 08:50:52 rpmi: gcc-c++-8-alt2 p9+246536.100.3.1 1582643803 installed
<13>Jan 17 08:50:52 rpmi: python-modules-curses-2.7.16-alt1.M90P.2 p9+260393.40.3.1 1604003681 installed
<13>Jan 17 08:50:52 rpmi: libtinfo-devel-6.1.20180407-alt2 sisyphus+222164.200.1.1 1550686226 installed
<13>Jan 17 08:50:52 rpmi: libncurses-devel-6.1.20180407-alt2 sisyphus+222164.200.1.1 1550686226 installed
<13>Jan 17 08:50:52 rpmi: libverto-0.3.0-alt1_7 sisyphus+225932.100.1.1 1553994919 installed
<13>Jan 17 08:50:52 rpmi: libkeyutils-1.6-alt2 sisyphus+226520.100.2.1 1554512089 installed
<13>Jan 17 08:50:52 rpmi: libp11-kit-0.23.15-alt2 p9+254920.2400.19.1 1601385903 installed
<13>Jan 17 08:50:52 rpmi: libtasn1-4.14-alt1 p9+235792.100.2.1 1565425233 installed
<13>Jan 17 08:50:52 rpmi: rpm-macros-alternatives-0.5.1-alt1 sisyphus+226946.100.1.1 1554830426 installed
<13>Jan 17 08:50:52 rpmi: alternatives-0.5.1-alt1 sisyphus+226946.100.1.1 1554830426 installed
<13>Jan 17 08:50:52 rpmi: ca-certificates-2020.06.29-alt1 p9+258899.100.3.1 1601998604 installed
<13>Jan 17 08:50:52 rpmi: ca-trust-0.1.2-alt1 p9+233349.100.1.1 1561655062 installed
<13>Jan 17 08:50:52 rpmi: p11-kit-trust-0.23.15-alt2 p9+254920.2400.19.1 1601385903 installed
<13>Jan 17 08:50:52 rpmi: libcrypto1.1-1.1.1i-alt1 p9+263105.100.1.1 1607446292 installed
<13>Jan 17 08:50:52 rpmi: libssl1.1-1.1.1i-alt1 p9+263105.100.1.1 1607446292 installed
<13>Jan 17 08:50:52 rpmi: libpython3-3.7.4-alt3 p9+249932.100.2.1 1587127349 installed
<13>Jan 17 08:50:52 rpmi: python3-3.7.4-alt3 p9+249932.100.2.1 1587127349 installed
<13>Jan 17 08:50:53 rpmi: python3-base-3.7.4-alt3 p9+249932.100.2.1 1587127349 installed
<13>Jan 17 08:50:53 rpmi: libqt5-network-5.12.9-alt1 p9+258569.200.6.1 1602528343 installed
<13>Jan 17 08:50:53 rpmi: libqt5-xcbqpa-5.12.9-alt1 p9+258569.200.6.1 1602528343 installed
<13>Jan 17 08:50:53 rpmi: libqt5-eglfskmssupport-5.12.9-alt1 p9+258569.200.6.1 1602528343 installed
<13>Jan 17 08:50:53 rpmi: libqt5-eglfsdeviceintegration-5.12.9-alt1 p9+258569.200.6.1 1602528343 installed
<13>Jan 17 08:50:53 rpmi: libqt5-gui-5.12.9-alt1 p9+258569.200.6.1 1602528343 installed
<13>Jan 17 08:50:53 rpmi: libqt5-widgets-5.12.9-alt1 p9+258569.200.6.1 1602528343 installed
<13>Jan 17 08:50:53 rpmi: libqt5-opengl-5.12.9-alt1 p9+258569.200.6.1 1602528343 installed
<13>Jan 17 08:50:53 rpmi: libqt5-printsupport-5.12.9-alt1 p9+258569.200.6.1 1602528343 installed
<13>Jan 17 08:50:53 rpmi: glib2-devel-2.60.7-alt1 p9+237353.100.2.2 1568373081 installed
<13>Jan 17 08:50:53 rpmi: libharfbuzz-devel-2.6.2-alt1 p9+238790.200.1.1 1570435826 installed
<13>Jan 17 08:50:53 rpmi: libvulkan-devel-1.2.141-alt1.1 p9+260591.340.12.1 1606214415 installed
<13>Jan 17 08:50:53 rpmi: libcom_err-1.44.6-alt1 sisyphus+224154.100.1.1 1552091678 installed
<86>Jan 17 08:50:53 groupadd[1692952]: group added to /etc/group: name=_keytab, GID=499
<86>Jan 17 08:50:53 groupadd[1692952]: group added to /etc/gshadow: name=_keytab
<86>Jan 17 08:50:53 groupadd[1692952]: new group: name=_keytab, GID=499
<13>Jan 17 08:50:53 rpmi: libkrb5-1.17.2-alt1 p9+262110.100.3.1 1606242416 installed
<13>Jan 17 08:50:53 rpmi: libtirpc-1.0.3-alt1 1532008017 installed
<13>Jan 17 08:50:53 rpmi: libnsl2-1.1.0-alt1_1 1511548749 installed
<13>Jan 17 08:50:53 rpmi: python-modules-compiler-2.7.16-alt1.M90P.2 p9+260393.40.3.1 1604003681 installed
<13>Jan 17 08:50:53 rpmi: python-modules-email-2.7.16-alt1.M90P.2 p9+260393.40.3.1 1604003681 installed
<13>Jan 17 08:50:53 rpmi: python-modules-unittest-2.7.16-alt1.M90P.2 p9+260393.40.3.1 1604003681 installed
<13>Jan 17 08:50:54 rpmi: python-modules-encodings-2.7.16-alt1.M90P.2 p9+260393.40.3.1 1604003681 installed
<13>Jan 17 08:50:54 rpmi: python-modules-2.7.16-alt1.M90P.2 p9+260393.40.3.1 1604003681 installed
<13>Jan 17 08:50:54 rpmi: python-modules-nis-2.7.16-alt1.M90P.2 p9+260393.40.3.1 1604003681 installed
<13>Jan 17 08:50:54 rpmi: python-module-six-1.12.0-alt1 sisyphus+219665.100.2.1 1548148570 installed
<13>Jan 17 08:50:54 rpmi: python-modules-ctypes-2.7.16-alt1.M90P.2 p9+260393.40.3.1 1604003681 installed
<13>Jan 17 08:50:54 rpmi: python-module-pkg_resources-1:40.8.0-alt2 sisyphus+229158.200.2.1 1557735221 installed
<13>Jan 17 08:50:54 rpmi: python-modules-xml-2.7.16-alt1.M90P.2 p9+260393.40.3.1 1604003681 installed
<13>Jan 17 08:50:54 rpmi: python-modules-json-2.7.16-alt1.M90P.2 p9+260393.40.3.1 1604003681 installed
<13>Jan 17 08:50:54 rpmi: python-module-jinja2-2.11.2-alt1 p9+254838.40.14.1 1602882082 installed
<13>Jan 17 08:50:54 rpmi: python-modules-multiprocessing-2.7.16-alt1.M90P.2 p9+260393.40.3.1 1604003681 installed
<13>Jan 17 08:50:54 rpmi: python-modules-logging-2.7.16-alt1.M90P.2 p9+260393.40.3.1 1604003681 installed
<13>Jan 17 08:50:54 rpmi: python-modules-hotshot-2.7.16-alt1.M90P.2 p9+260393.40.3.1 1604003681 installed
<13>Jan 17 08:50:54 rpmi: python-module-chardet-3.0.4-alt1 sisyphus+227476.1700.1.2 1555756717 installed
<13>Jan 17 08:50:54 rpmi: python-module-whoosh-2.7.4-alt1 1527697941 installed
<13>Jan 17 08:50:54 rpmi: python-module-webencodings-0.5.1-alt1.1 1517943573 installed
<13>Jan 17 08:50:54 rpmi: python-modules-bsddb-2.7.16-alt1.M90P.2 p9+260393.40.3.1 1604003681 installed
<13>Jan 17 08:50:54 rpmi: python-2.7.16-alt1.M90P.2 p9+260393.40.3.1 1604003681 installed
<13>Jan 17 08:50:54 rpmi: python-strict-2.7.16-alt1.M90P.2 p9+260393.40.3.1 1604003646 installed
<13>Jan 17 08:50:54 rpmi: python-modules-distutils-2.7.16-alt1.M90P.2 p9+260393.40.3.1 1604003681 installed
<13>Jan 17 08:50:54 rpmi: python-module-cssselect-0.9.1-alt1.2 sisyphus+227479.1100.1.2 1555757152 installed
<13>Jan 17 08:50:54 rpmi: python-module-html5lib-1:0.999999999-alt4.qa1 sisyphus+227493.600.1.3 1555835341 installed
<13>Jan 17 08:50:54 rpmi: python-module-lxml-4.4.2-alt1 p9+244111.100.1.1 1578758819 installed
<13>Jan 17 08:50:54 rpmi: python-module-docutils-0.14-alt2 1535729778 installed
<13>Jan 17 08:50:54 rpmi: python-module-idna-2.8-alt1 sisyphus+227494.400.1.3 1555838720 installed
<13>Jan 17 08:50:54 rpmi: python-module-pycparser-2.19-alt1 sisyphus+228366.1000.2.3 1556706938 installed
<13>Jan 17 08:50:54 rpmi: python-module-cffi-1.12.3-alt1 sisyphus+229040.200.3.1 1557316452 installed
<13>Jan 17 08:50:54 rpmi: python-module-asn1crypto-0.24.0-alt1 sisyphus+227473.1300.1.2 1555756512 installed
<13>Jan 17 08:50:54 rpmi: python-module-ntlm-1.1.0-alt1.2 sisyphus+228512.100.1.1 1556654575 installed
<13>Jan 17 08:50:54 rpmi: python-module-pytz-1:2016.10-alt1 1484291011 installed
<13>Jan 17 08:50:55 rpmi: python-module-babel-1:2.6.0-alt1 sisyphus+228351.2400.6.2 1556652168 installed
<13>Jan 17 08:50:55 rpmi: python-module-PyStemmer-1.0.1-alt1.2.1 1321388303 installed
<13>Jan 17 08:50:55 rpmi: python-module-snowballstemmer-1.2.0-alt2.1 1457859319 installed
<13>Jan 17 08:50:55 rpmi: python-module-numpy-1:1.15.4-alt5 p9+255957.40.47.1 1599835883 installed
<13>Jan 17 08:50:55 rpmi: python-module-simplejson-3.15.0-alt1.qa1 sisyphus+225625.16100.91.1 1555292381 installed
<13>Jan 17 08:50:55 rpmi: python-module-ipaddress-1.0.18-alt1.1 sisyphus+227494.1700.1.3 1555839523 installed
<13>Jan 17 08:50:55 rpmi: python-module-cryptography-2.6.1-alt1 sisyphus+225625.24400.91.1 1555298600 installed
<13>Jan 17 08:50:55 rpmi: python-module-OpenSSL-18.0.0-alt1 1532996168 installed
<13>Jan 17 08:50:55 rpmi: python-module-ndg-0.4.2-alt1.qa1 sisyphus+227504.1300.1.2 1555853234 installed
<13>Jan 17 08:50:55 rpmi: python-module-ndg-httpsclient-0.4.2-alt1.qa1 sisyphus+227504.1300.1.2 1555853234 installed
<13>Jan 17 08:50:55 rpmi: python-module-backports-3.5.0.1-alt1.1.1 1517645428 installed
<13>Jan 17 08:50:55 rpmi: python-module-backports.ssl_match_hostname-3.5.0.1-alt1.1.1 1517645428 installed
<13>Jan 17 08:50:55 rpmi: python-module-urllib3-2:1.25.6-alt1 p9+250567.200.5.1 1590420860 installed
<13>Jan 17 08:50:55 rpmi: python-module-requests-2.23.0-alt1 p9+250567.400.5.1 1590420890 installed
<13>Jan 17 08:50:55 rpmi: python-module-typing-3.6.6-alt2 sisyphus+220108.100.1.1 1548749697 installed
<13>Jan 17 08:50:55 rpmi: python-modules-sqlite3-2.7.16-alt1.M90P.2 p9+260393.40.3.1 1604003681 installed
<13>Jan 17 08:50:55 rpmi: python-module-SQLAlchemy-1.2.15-alt1 sisyphus+225625.4500.91.1 1555284142 installed
<13>Jan 17 08:50:55 rpmi: python-module-xapian-1.4.15-alt1 p9+258827.200.2.1 1601308077 installed
<13>Jan 17 08:50:55 rpmi: python-module-alabaster-0.7.6-alt3 sisyphus+228351.700.4.1 1556637370 installed
<13>Jan 17 08:50:56 rpmi: python-module-Pygments-2.4.2-alt3 p9+263160.400.4.1 1607939146 installed
<13>Jan 17 08:50:56 rpmi: python-module-sphinxcontrib-websupport-1.0.1-alt5 p9+247680.340.15.1 1585331199 installed
<13>Jan 17 08:50:56 rpmi: python-module-sphinx-1:1.6.5-alt8 p9+250806.100.2.1 1588178467 installed
<13>Jan 17 08:50:56 rpmi: python-module-numpydoc-1:0.7.0-alt1 sisyphus+227506.500.1.2 1555852058 installed
<13>Jan 17 08:50:56 rpmi: libnsl2-devel-1.1.0-alt1_1 1511548749 installed
<13>Jan 17 08:50:56 rpmi: python-dev-2.7.16-alt1.M90P.2 p9+260393.40.3.1 1604003681 installed
<13>Jan 17 08:50:56 rpmi: libnumpy-devel-1:1.15.4-alt5 p9+255957.40.47.1 1599835883 installed
<13>Jan 17 08:50:56 rpmi: python-module-OpenGL-3.1.1a1-alt2 sisyphus+227882.100.1.1 1555775819 installed
<13>Jan 17 08:50:57 rpmi: qt5-base-devel-5.12.9-alt1 p9+258569.200.6.1 1602528343 installed
<13>Jan 17 08:50:57 rpmi: libfreetype-devel-2.10.1-alt1.1.p9.1 p9+260179.200.3.1 1603971407 installed
<13>Jan 17 08:50:57 rpmi: libfreeglut-devel-3.0.0-alt3 sisyphus+226742.100.2.3 1554619771 installed
<13>Jan 17 08:50:57 rpmi: libGLEW-devel-2.1.0-alt4 sisyphus+226787.100.1.1 1554586973 installed
<13>Jan 17 08:50:57 rpmi: libmmtf-devel-1.0.0-alt1 sisyphus+229260.120.3.1 1557689642 installed
<13>Jan 17 08:50:57 rpmi: libpng-devel-1.6.36-alt1 sisyphus+219478.100.1.1 1547633314 installed
<13>Jan 17 08:50:57 rpmi: libxml2-devel-1:2.9.10-alt4 p9+261133.100.1.1 1604676314 installed
<13>Jan 17 08:50:57 rpmi: libglm-devel-0.9.8.5-alt2 1519310330 installed
Building target platforms: i586
Building for target i586
Wrote: /usr/src/in/nosrpm/pymol-2.3.0-alt1.nosrc.rpm
<13>Jan 17 08:51:02 rpmi: python-tools-2to3-2.7.16-alt1.M90P.2 p9+260393.40.3.1 1604003681 installed
<13>Jan 17 08:51:02 rpmi: python-module-setuptools-1:40.8.0-alt2 sisyphus+229158.200.2.1 1557735221 installed
Installing pymol-2.3.0-alt1.src.rpm
Building target platforms: i586
Building for target i586
Executing(%prep): /bin/sh -e /usr/src/tmp/rpm-tmp.3616
+ umask 022
+ /bin/mkdir -p /usr/src/RPM/BUILD
+ cd /usr/src/RPM/BUILD
+ cd /usr/src/RPM/BUILD
+ rm -rf pymol-2.3.0
+ echo 'Source #0 (pymol-2.3.0.tar):'
Source #0 (pymol-2.3.0.tar):
+ /bin/tar -xf /usr/src/RPM/SOURCES/pymol-2.3.0.tar
+ cd pymol-2.3.0
+ /bin/chmod -c -Rf u+rwX,go-w .
+ cp /usr/src/RPM/SOURCES/PymolRef.pdf ./
+ exit 0
Executing(%build): /bin/sh -e /usr/src/tmp/rpm-tmp.3616
+ umask 022
+ /bin/mkdir -p /usr/src/RPM/BUILD
+ cd /usr/src/RPM/BUILD
+ cd pymol-2.3.0
+ CFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic'
+ export CFLAGS
+ CXXFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic'
+ export CXXFLAGS
+ FFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic'
+ export FFLAGS
+ /usr/bin/python2.7 setup.py build
running build
running build_py
creating build/lib.linux-i686-2.7
creating build/lib.linux-i686-2.7/pymol
creating build/lib.linux-i686-2.7/pymol/embed
creating build/lib.linux-i686-2.7/pymol/embed/epymol
copying modules/pymol/embed/epymol/__init__.py -> build/lib.linux-i686-2.7/pymol/embed/epymol
creating build/lib.linux-i686-2.7/chempy
creating build/lib.linux-i686-2.7/chempy/tinker
copying modules/chempy/tinker/state.py -> build/lib.linux-i686-2.7/chempy/tinker
copying modules/chempy/tinker/realtime.py -> build/lib.linux-i686-2.7/chempy/tinker
copying modules/chempy/tinker/keyword.py -> build/lib.linux-i686-2.7/chempy/tinker
copying modules/chempy/tinker/amber.py -> build/lib.linux-i686-2.7/chempy/tinker
copying modules/chempy/tinker/__init__.py -> build/lib.linux-i686-2.7/chempy/tinker
creating build/lib.linux-i686-2.7/pmg_tk
creating build/lib.linux-i686-2.7/pmg_tk/skins
creating build/lib.linux-i686-2.7/pmg_tk/skins/demo
copying modules/pmg_tk/skins/demo/__init__.py -> build/lib.linux-i686-2.7/pmg_tk/skins/demo
creating build/lib.linux-i686-2.7/pmg_tk/startup
copying modules/pmg_tk/startup/apbs_tools.py -> build/lib.linux-i686-2.7/pmg_tk/startup
copying modules/pmg_tk/startup/__init__.py -> build/lib.linux-i686-2.7/pmg_tk/startup
creating build/lib.linux-i686-2.7/pymol/opengl
creating build/lib.linux-i686-2.7/pymol/opengl/glu
copying modules/pymol/opengl/glu/__init__.py -> build/lib.linux-i686-2.7/pymol/opengl/glu
creating build/lib.linux-i686-2.7/chempy/mmtf
copying modules/chempy/mmtf/io.py -> build/lib.linux-i686-2.7/chempy/mmtf
copying modules/chempy/mmtf/__init__.py -> build/lib.linux-i686-2.7/chempy/mmtf
creating build/lib.linux-i686-2.7/pmg_qt
creating build/lib.linux-i686-2.7/pmg_qt/syntax
copying modules/pmg_qt/syntax/python.py -> build/lib.linux-i686-2.7/pmg_qt/syntax
copying modules/pmg_qt/syntax/pmlparser.py -> build/lib.linux-i686-2.7/pmg_qt/syntax
copying modules/pmg_qt/syntax/pml.py -> build/lib.linux-i686-2.7/pmg_qt/syntax
copying modules/pmg_qt/syntax/__init__.py -> build/lib.linux-i686-2.7/pmg_qt/syntax
creating build/lib.linux-i686-2.7/chempy/fast
copying modules/chempy/fast/__init__.py -> build/lib.linux-i686-2.7/chempy/fast
creating build/lib.linux-i686-2.7/chempy/fragments
copying modules/chempy/fragments/__init__.py -> build/lib.linux-i686-2.7/chempy/fragments
copying modules/pmg_tk/skins/__init__.py -> build/lib.linux-i686-2.7/pmg_tk/skins
creating build/lib.linux-i686-2.7/pymol/contrib
copying modules/pymol/contrib/__init__.py -> build/lib.linux-i686-2.7/pymol/contrib
copying modules/pymol/embed/__init__.py -> build/lib.linux-i686-2.7/pymol/embed
creating build/lib.linux-i686-2.7/pymol/Qt
copying modules/pymol/Qt/utils.py -> build/lib.linux-i686-2.7/pymol/Qt
copying modules/pymol/Qt/__init__.py -> build/lib.linux-i686-2.7/pymol/Qt
creating build/lib.linux-i686-2.7/pmg_qt/forms
copying modules/pmg_qt/forms/__init__.py -> build/lib.linux-i686-2.7/pmg_qt/forms
creating build/lib.linux-i686-2.7/pymol/opengl/glut
copying modules/pymol/opengl/glut/__init__.py -> build/lib.linux-i686-2.7/pymol/opengl/glut
creating build/lib.linux-i686-2.7/pymol2
copying modules/pymol2/cmd2.py -> build/lib.linux-i686-2.7/pymol2
copying modules/pymol2/__init__.py -> build/lib.linux-i686-2.7/pymol2
creating build/lib.linux-i686-2.7/pymol/stereochemistry
copying modules/pymol/stereochemistry/__init__.py -> build/lib.linux-i686-2.7/pymol/stereochemistry
copying modules/pmg_tk/volume.py -> build/lib.linux-i686-2.7/pmg_tk
copying modules/pmg_tk/__init__.py -> build/lib.linux-i686-2.7/pmg_tk
copying modules/pmg_tk/TextEditor.py -> build/lib.linux-i686-2.7/pmg_tk
copying modules/pmg_tk/Setting.py -> build/lib.linux-i686-2.7/pmg_tk
copying modules/pmg_tk/SetEditor.py -> build/lib.linux-i686-2.7/pmg_tk
copying modules/pmg_tk/PyMOLMapLoad.py -> build/lib.linux-i686-2.7/pmg_tk
copying modules/pmg_tk/PMGApp.py -> build/lib.linux-i686-2.7/pmg_tk
copying modules/pmg_tk/Demo.py -> build/lib.linux-i686-2.7/pmg_tk
copying modules/pmg_tk/ColorEditor.py -> build/lib.linux-i686-2.7/pmg_tk
creating build/lib.linux-i686-2.7/pmg_tk/skins/normal
copying modules/pmg_tk/skins/normal/builder.py -> build/lib.linux-i686-2.7/pmg_tk/skins/normal
copying modules/pmg_tk/skins/normal/__init__.py -> build/lib.linux-i686-2.7/pmg_tk/skins/normal
copying modules/pmg_tk/skins/normal/ModalWindow.py -> build/lib.linux-i686-2.7/pmg_tk/skins/normal
creating build/lib.linux-i686-2.7/chempy/champ
copying modules/chempy/champ/formal_charges.py -> build/lib.linux-i686-2.7/chempy/champ
copying modules/chempy/champ/assign.py -> build/lib.linux-i686-2.7/chempy/champ
copying modules/chempy/champ/amber99.py -> build/lib.linux-i686-2.7/chempy/champ
copying modules/chempy/champ/__init__.py -> build/lib.linux-i686-2.7/chempy/champ
creating build/lib.linux-i686-2.7/pymol/embed/wxpymol
copying modules/pymol/embed/wxpymol/__init__.py -> build/lib.linux-i686-2.7/pymol/embed/wxpymol
copying modules/pmg_qt/volume.py -> build/lib.linux-i686-2.7/pmg_qt
copying modules/pmg_qt/pymol_qt_gui.py -> build/lib.linux-i686-2.7/pmg_qt
copying modules/pmg_qt/pymol_gl_widget.py -> build/lib.linux-i686-2.7/pmg_qt
copying modules/pmg_qt/properties_dialog.py -> build/lib.linux-i686-2.7/pmg_qt
copying modules/pmg_qt/mimic_tk.py -> build/lib.linux-i686-2.7/pmg_qt
copying modules/pmg_qt/mimic_pmg_tk.py -> build/lib.linux-i686-2.7/pmg_qt
copying modules/pmg_qt/keymapping.py -> build/lib.linux-i686-2.7/pmg_qt
copying modules/pmg_qt/file_dialogs.py -> build/lib.linux-i686-2.7/pmg_qt
copying modules/pmg_qt/builder.py -> build/lib.linux-i686-2.7/pmg_qt
copying modules/pmg_qt/advanced_settings_gui.py -> build/lib.linux-i686-2.7/pmg_qt
copying modules/pmg_qt/__init__.py -> build/lib.linux-i686-2.7/pmg_qt
copying modules/pmg_qt/TextEditor.py -> build/lib.linux-i686-2.7/pmg_qt
creating build/lib.linux-i686-2.7/pymol/wizard
copying modules/pymol/wizard/toggle.py -> build/lib.linux-i686-2.7/pymol/wizard
copying modules/pymol/wizard/stereodemo.py -> build/lib.linux-i686-2.7/pymol/wizard
copying modules/pymol/wizard/security.py -> build/lib.linux-i686-2.7/pymol/wizard
copying modules/pymol/wizard/sculpting.py -> build/lib.linux-i686-2.7/pymol/wizard
copying modules/pymol/wizard/renaming.py -> build/lib.linux-i686-2.7/pymol/wizard
copying modules/pymol/wizard/pseudoatom.py -> build/lib.linux-i686-2.7/pymol/wizard
copying modules/pymol/wizard/pair_fit.py -> build/lib.linux-i686-2.7/pymol/wizard
copying modules/pymol/wizard/nucmutagenesis.py -> build/lib.linux-i686-2.7/pymol/wizard
copying modules/pymol/wizard/mutagenesis.py -> build/lib.linux-i686-2.7/pymol/wizard
copying modules/pymol/wizard/message.py -> build/lib.linux-i686-2.7/pymol/wizard
copying modules/pymol/wizard/measurement.py -> build/lib.linux-i686-2.7/pymol/wizard
copying modules/pymol/wizard/label.py -> build/lib.linux-i686-2.7/pymol/wizard
copying modules/pymol/wizard/filter.py -> build/lib.linux-i686-2.7/pymol/wizard
copying modules/pymol/wizard/fedora.py -> build/lib.linux-i686-2.7/pymol/wizard
copying modules/pymol/wizard/dragging.py -> build/lib.linux-i686-2.7/pymol/wizard
copying modules/pymol/wizard/distance.py -> build/lib.linux-i686-2.7/pymol/wizard
copying modules/pymol/wizard/density.py -> build/lib.linux-i686-2.7/pymol/wizard
copying modules/pymol/wizard/demo.py -> build/lib.linux-i686-2.7/pymol/wizard
copying modules/pymol/wizard/command.py -> build/lib.linux-i686-2.7/pymol/wizard
copying modules/pymol/wizard/cleanup.py -> build/lib.linux-i686-2.7/pymol/wizard
copying modules/pymol/wizard/charge.py -> build/lib.linux-i686-2.7/pymol/wizard
copying modules/pymol/wizard/box.py -> build/lib.linux-i686-2.7/pymol/wizard
copying modules/pymol/wizard/benchmark.py -> build/lib.linux-i686-2.7/pymol/wizard
copying modules/pymol/wizard/appearance.py -> build/lib.linux-i686-2.7/pymol/wizard
copying modules/pymol/wizard/annotation.py -> build/lib.linux-i686-2.7/pymol/wizard
copying modules/pymol/wizard/__init__.py -> build/lib.linux-i686-2.7/pymol/wizard
creating build/lib.linux-i686-2.7/pymol/opengl/gl
copying modules/pymol/opengl/gl/__init__.py -> build/lib.linux-i686-2.7/pymol/opengl/gl
copying modules/pymol/xwin.py -> build/lib.linux-i686-2.7/pymol
copying modules/pymol/xray.py -> build/lib.linux-i686-2.7/pymol
copying modules/pymol/wizarding.py -> build/lib.linux-i686-2.7/pymol
copying modules/pymol/viewing.py -> build/lib.linux-i686-2.7/pymol
copying modules/pymol/vfont.py -> build/lib.linux-i686-2.7/pymol
copying modules/pymol/util.py -> build/lib.linux-i686-2.7/pymol
copying modules/pymol/shortcut.py -> build/lib.linux-i686-2.7/pymol
copying modules/pymol/setting.py -> build/lib.linux-i686-2.7/pymol
copying modules/pymol/seqalign.py -> build/lib.linux-i686-2.7/pymol
copying modules/pymol/selector.py -> build/lib.linux-i686-2.7/pymol
copying modules/pymol/selecting.py -> build/lib.linux-i686-2.7/pymol
copying modules/pymol/rpc.py -> build/lib.linux-i686-2.7/pymol
copying modules/pymol/querying.py -> build/lib.linux-i686-2.7/pymol
copying modules/pymol/pymolhttpd.py -> build/lib.linux-i686-2.7/pymol
copying modules/pymol/preset.py -> build/lib.linux-i686-2.7/pymol
copying modules/pymol/povray.py -> build/lib.linux-i686-2.7/pymol
copying modules/pymol/parsing.py -> build/lib.linux-i686-2.7/pymol
copying modules/pymol/parser.py -> build/lib.linux-i686-2.7/pymol
copying modules/pymol/moving.py -> build/lib.linux-i686-2.7/pymol
copying modules/pymol/movie.py -> build/lib.linux-i686-2.7/pymol
copying modules/pymol/morphing.py -> build/lib.linux-i686-2.7/pymol
copying modules/pymol/monitoring.py -> build/lib.linux-i686-2.7/pymol
copying modules/pymol/menu.py -> build/lib.linux-i686-2.7/pymol
copying modules/pymol/m4x.py -> build/lib.linux-i686-2.7/pymol
copying modules/pymol/locking.py -> build/lib.linux-i686-2.7/pymol
copying modules/pymol/lazyio.py -> build/lib.linux-i686-2.7/pymol
copying modules/pymol/keywords.py -> build/lib.linux-i686-2.7/pymol
copying modules/pymol/keyboard.py -> build/lib.linux-i686-2.7/pymol
copying modules/pymol/invocation.py -> build/lib.linux-i686-2.7/pymol
copying modules/pymol/internal.py -> build/lib.linux-i686-2.7/pymol
copying modules/pymol/importing.py -> build/lib.linux-i686-2.7/pymol
copying modules/pymol/helping.py -> build/lib.linux-i686-2.7/pymol
copying modules/pymol/headering.py -> build/lib.linux-i686-2.7/pymol
copying modules/pymol/gui.py -> build/lib.linux-i686-2.7/pymol
copying modules/pymol/fitting.py -> build/lib.linux-i686-2.7/pymol
copying modules/pymol/feedingback.py -> build/lib.linux-i686-2.7/pymol
copying modules/pymol/externing.py -> build/lib.linux-i686-2.7/pymol
copying modules/pymol/exporting.py -> build/lib.linux-i686-2.7/pymol
copying modules/pymol/experimenting.py -> build/lib.linux-i686-2.7/pymol
copying modules/pymol/editor.py -> build/lib.linux-i686-2.7/pymol
copying modules/pymol/editing.py -> build/lib.linux-i686-2.7/pymol
copying modules/pymol/diagnosing.py -> build/lib.linux-i686-2.7/pymol
copying modules/pymol/creating.py -> build/lib.linux-i686-2.7/pymol
copying modules/pymol/controlling.py -> build/lib.linux-i686-2.7/pymol
copying modules/pymol/constants_palette.py -> build/lib.linux-i686-2.7/pymol
copying modules/pymol/constants.py -> build/lib.linux-i686-2.7/pymol
copying modules/pymol/computing.py -> build/lib.linux-i686-2.7/pymol
copying modules/pymol/completing.py -> build/lib.linux-i686-2.7/pymol
copying modules/pymol/commanding.py -> build/lib.linux-i686-2.7/pymol
copying modules/pymol/colorramping.py -> build/lib.linux-i686-2.7/pymol
copying modules/pymol/colorprinting.py -> build/lib.linux-i686-2.7/pymol
copying modules/pymol/cmd.py -> build/lib.linux-i686-2.7/pymol
copying modules/pymol/checking.py -> build/lib.linux-i686-2.7/pymol
copying modules/pymol/cgo.py -> build/lib.linux-i686-2.7/pymol
copying modules/pymol/callback.py -> build/lib.linux-i686-2.7/pymol
copying modules/pymol/api.py -> build/lib.linux-i686-2.7/pymol
copying modules/pymol/_gui.py -> build/lib.linux-i686-2.7/pymol
copying modules/pymol/__main__.py -> build/lib.linux-i686-2.7/pymol
copying modules/pymol/__init__.py -> build/lib.linux-i686-2.7/pymol
creating build/lib.linux-i686-2.7/chempy/bmin
copying modules/chempy/bmin/util.py -> build/lib.linux-i686-2.7/chempy/bmin
copying modules/chempy/bmin/state.py -> build/lib.linux-i686-2.7/chempy/bmin
copying modules/chempy/bmin/realtime.py -> build/lib.linux-i686-2.7/chempy/bmin
copying modules/chempy/bmin/commands.py -> build/lib.linux-i686-2.7/chempy/bmin
copying modules/chempy/bmin/__init__.py -> build/lib.linux-i686-2.7/chempy/bmin
copying modules/chempy/xyz.py -> build/lib.linux-i686-2.7/chempy
copying modules/chempy/water_residues.py -> build/lib.linux-i686-2.7/chempy
copying modules/chempy/water_amber.py -> build/lib.linux-i686-2.7/chempy
copying modules/chempy/solvate.py -> build/lib.linux-i686-2.7/chempy
copying modules/chempy/sdf.py -> build/lib.linux-i686-2.7/chempy
copying modules/chempy/protein_residues.py -> build/lib.linux-i686-2.7/chempy
copying modules/chempy/protein_mmff.py -> build/lib.linux-i686-2.7/chempy
copying modules/chempy/protein_amber99.py -> build/lib.linux-i686-2.7/chempy
copying modules/chempy/protein_amber.py -> build/lib.linux-i686-2.7/chempy
copying modules/chempy/protein.py -> build/lib.linux-i686-2.7/chempy
copying modules/chempy/place.py -> build/lib.linux-i686-2.7/chempy
copying modules/chempy/pkl.py -> build/lib.linux-i686-2.7/chempy
copying modules/chempy/pdb.py -> build/lib.linux-i686-2.7/chempy
copying modules/chempy/neighbor.py -> build/lib.linux-i686-2.7/chempy
copying modules/chempy/mol2.py -> build/lib.linux-i686-2.7/chempy
copying modules/chempy/mol.py -> build/lib.linux-i686-2.7/chempy
copying modules/chempy/models.py -> build/lib.linux-i686-2.7/chempy
copying modules/chempy/mmd.py -> build/lib.linux-i686-2.7/chempy
copying modules/chempy/mass.py -> build/lib.linux-i686-2.7/chempy
copying modules/chempy/map.py -> build/lib.linux-i686-2.7/chempy
copying modules/chempy/mae.py -> build/lib.linux-i686-2.7/chempy
copying modules/chempy/lst.py -> build/lib.linux-i686-2.7/chempy
copying modules/chempy/io.py -> build/lib.linux-i686-2.7/chempy
copying modules/chempy/hetatm.py -> build/lib.linux-i686-2.7/chempy
copying modules/chempy/gms.py -> build/lib.linux-i686-2.7/chempy
copying modules/chempy/gamess1.py -> build/lib.linux-i686-2.7/chempy
copying modules/chempy/dictdb.py -> build/lib.linux-i686-2.7/chempy
copying modules/chempy/cpv.py -> build/lib.linux-i686-2.7/chempy
copying modules/chempy/cif.py -> build/lib.linux-i686-2.7/chempy
copying modules/chempy/charge.py -> build/lib.linux-i686-2.7/chempy
copying modules/chempy/cex.py -> build/lib.linux-i686-2.7/chempy
copying modules/chempy/cc1.py -> build/lib.linux-i686-2.7/chempy
copying modules/chempy/brick.py -> build/lib.linux-i686-2.7/chempy
copying modules/chempy/bonds.py -> build/lib.linux-i686-2.7/chempy
copying modules/chempy/bond_mmff.py -> build/lib.linux-i686-2.7/chempy
copying modules/chempy/bond_amber.py -> build/lib.linux-i686-2.7/chempy
copying modules/chempy/arc.py -> build/lib.linux-i686-2.7/chempy
copying modules/chempy/__init__.py -> build/lib.linux-i686-2.7/chempy
creating build/lib.linux-i686-2.7/pymol/plugins
copying modules/pymol/plugins/repository.py -> build/lib.linux-i686-2.7/pymol/plugins
copying modules/pymol/plugins/managergui_qt.py -> build/lib.linux-i686-2.7/pymol/plugins
copying modules/pymol/plugins/managergui.py -> build/lib.linux-i686-2.7/pymol/plugins
copying modules/pymol/plugins/legacysupport.py -> build/lib.linux-i686-2.7/pymol/plugins
copying modules/pymol/plugins/installation.py -> build/lib.linux-i686-2.7/pymol/plugins
copying modules/pymol/plugins/__init__.py -> build/lib.linux-i686-2.7/pymol/plugins
copying modules/pymol/opengl/__init__.py -> build/lib.linux-i686-2.7/pymol/opengl
copying modules/pmg_qt/forms/save_object.ui -> build/lib.linux-i686-2.7/pmg_qt/forms
copying modules/pmg_qt/forms/save_molecule.ui -> build/lib.linux-i686-2.7/pmg_qt/forms
copying modules/pmg_qt/forms/render.ui -> build/lib.linux-i686-2.7/pmg_qt/forms
copying modules/pmg_qt/forms/props.ui -> build/lib.linux-i686-2.7/pmg_qt/forms
copying modules/pmg_qt/forms/png.ui -> build/lib.linux-i686-2.7/pmg_qt/forms
copying modules/pmg_qt/forms/pluginmanager.ui -> build/lib.linux-i686-2.7/pmg_qt/forms
copying modules/pmg_qt/forms/pluginitem.ui -> build/lib.linux-i686-2.7/pmg_qt/forms
copying modules/pmg_qt/forms/movieexport.ui -> build/lib.linux-i686-2.7/pmg_qt/forms
copying modules/pmg_qt/forms/load_traj.ui -> build/lib.linux-i686-2.7/pmg_qt/forms
copying modules/pmg_qt/forms/load_mtz.ui -> build/lib.linux-i686-2.7/pmg_qt/forms
copying modules/pmg_qt/forms/load_map.ui -> build/lib.linux-i686-2.7/pmg_qt/forms
copying modules/pmg_qt/forms/load_mae.ui -> build/lib.linux-i686-2.7/pmg_qt/forms
copying modules/pmg_qt/forms/load_aln.ui -> build/lib.linux-i686-2.7/pmg_qt/forms
copying modules/pmg_qt/forms/fetch.ui -> build/lib.linux-i686-2.7/pmg_qt/forms
copying modules/pmg_qt/forms/colors.ui -> build/lib.linux-i686-2.7/pmg_qt/forms
copying modules/pmg_qt/forms/askpartial.ui -> build/lib.linux-i686-2.7/pmg_qt/forms
running build_ext
building 'pymol._cmd' extension
creating build/temp.linux-i686-2.7
creating build/temp.linux-i686-2.7/build
creating build/temp.linux-i686-2.7/build/generated
creating build/temp.linux-i686-2.7/contrib
creating build/temp.linux-i686-2.7/contrib/mmtf-c
creating build/temp.linux-i686-2.7/contrib/uiuc
creating build/temp.linux-i686-2.7/contrib/uiuc/plugins
creating build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin
creating build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src
creating build/temp.linux-i686-2.7/layer0
creating build/temp.linux-i686-2.7/layer1
creating build/temp.linux-i686-2.7/layer2
creating build/temp.linux-i686-2.7/layer3
creating build/temp.linux-i686-2.7/layer4
creating build/temp.linux-i686-2.7/layer5
creating build/temp.linux-i686-2.7/modules
creating build/temp.linux-i686-2.7/modules/cealign
creating build/temp.linux-i686-2.7/modules/cealign/src
creating build/temp.linux-i686-2.7/ov
creating build/temp.linux-i686-2.7/ov/src
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c build/generated/ShaderText.cpp -o build/temp.linux-i686-2.7/build/generated/ShaderText.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/mmtf-c/mmtf_parser.cpp -o build/temp.linux-i686-2.7/contrib/mmtf-c/mmtf_parser.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
contrib/mmtf-c/mmtf_parser.cpp: In function 'bool MMTF_unpack_from_file(const char*, MMTF_container*)':
contrib/mmtf-c/mmtf_parser.cpp:1037:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(buffer, fileLen, 1, file);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -fwrapv -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c: In function 'PlugIOManagerInitAll':
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:267:1: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
if(ok) ok = ok && (molfile_xyzplugin_init() == VMDPLUGIN_SUCCESS);
^~
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:269:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
if(ok) {
^~
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c: In function 'PlugIOManagerFreeAll':
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:405:1: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
if(ok) ok = ok && (molfile_xyzplugin_fini() == VMDPLUGIN_SUCCESS);
^~
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:407:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
return ok;
^~~~~~
i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -fwrapv -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function 'DEN_read_volumetric_data':
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:970:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:971:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function 'POT_read_volumetric_data':
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1113:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1114:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function 'abinit_header':
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1511:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
fread(skip, 1, 8, fp);
^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function 'GEO_read_next_timestep':
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:619:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
fscanf(data->file, "%*s %f %f %f", &x, &y, &z);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:70:
At top level:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'get_pte_idx_from_string' defined but not used [-Wunused-function]
static int get_pte_idx_from_string(const char *label) {
^~~~~~~~~~~~~~~~~~~~~~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/avsplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -fwrapv -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
In file included from contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c:42:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1097:13: warning: 'whereami' defined but not used [-Wunused-function]
static void whereami(FILE *file) {
^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1077:13: warning: 'thisline' defined but not used [-Wunused-function]
static void thisline(FILE *file) {
^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1028:12: warning: 'fpexpftoc' defined but not used [-Wunused-function]
static int fpexpftoc(char *ftocstr) {
^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1006:12: warning: 'have_keyline' defined but not used [-Wunused-function]
static int have_keyline(FILE *file, const char *keystring1,
^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:962:12: warning: 'goto_keyline' defined but not used [-Wunused-function]
static int goto_keyline(FILE *file, ...) {
^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:901:14: warning: 'strtoupper' defined but not used [-Wunused-function]
static char *strtoupper(char *s) {
^~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:895:12: warning: 'iswhiteline' defined but not used [-Wunused-function]
static int iswhiteline(char *s) {
^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:846:13: warning: 'eatwhitelines' defined but not used [-Wunused-function]
static void eatwhitelines(FILE *file) {
^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:835:13: warning: 'eatline' defined but not used [-Wunused-function]
static void eatline(FILE * fd, int n)
^~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:711:12: warning: 'symmetry_expand' defined but not used [-Wunused-function]
static int symmetry_expand(qm_atom_t **atoms, int numunique, int natoms,
^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:585:13: warning: 'print_matrix4' defined but not used [-Wunused-function]
static void print_matrix4(const float mat[16]) {
^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:540:13: warning: 'angular_momentum_expon' defined but not used [-Wunused-function]
static void angular_momentum_expon(int *ang_mom_expon,
^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:507:13: warning: 'del_wavefunction' defined but not used [-Wunused-function]
static void del_wavefunction(qm_timestep_t *ts) {
^~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:490:13: warning: 'replace_wavefunction' defined but not used [-Wunused-function]
static void replace_wavefunction(qm_timestep_t *ts, int n) {
^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:471:27: warning: 'add_wavefunction' defined but not used [-Wunused-function]
static qm_wavefunction_t* add_wavefunction(qm_timestep_t *ts) {
^~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:437:18: warning: 'init_qmdata' defined but not used [-Wunused-function]
static qmdata_t* init_qmdata() {
^~~~~~~~~~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'int read_bgf_timestep(void*, int, molfile_timestep_t*)':
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:243:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, LINESIZE, bgf->file);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:252:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, LINESIZE, bgf->file);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'int read_bgf_bonds_aux(void*, int*, int**, int**, float**)':
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:328:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, LINESIZE, bgf->file);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:346:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, LINESIZE, bgf->file);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:355:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(nextline, LINESIZE, bgf->file);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:419:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, LINESIZE, bgf->file);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'int read_bgf_structure(void*, int*, molfile_atom_t*)':
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:194:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, LINESIZE, bgf->file);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:203:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, LINESIZE, bgf->file);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'void* open_bgf_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:59:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, LINESIZE, fd);
~~~~~^~~~~~~~~~~~~~~~~~~~
i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -fwrapv -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c: In function 'open_binpos_read':
contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c:64:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
fread(magicchar,sizeof(char),4,fd);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c:72:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
fread(&igarb,sizeof(int),1,fd);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function 'int read_brix_data(void*, int, float*, float*)':
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:247:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(brick, sizeof(char), 512, fd);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function 'void* open_brix_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:79:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
fscanf(fd, "%3s", keyWord);
~~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:86:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
fscanf(fd, " %s %d %d %d", keyWord, &org_x, &org_y, &org_z);
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:93:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
fscanf(fd, " %s %d %d %d", keyWord, &ext_x, &ext_y, &ext_z);
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:100:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
fscanf(fd, " %s %f %f %f", keyWord, &grid_x, &grid_y, &grid_z);
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:109:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
fscanf(fd, " %s %f %f %f %f %f %f", keyWord,
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
&cell_x, &cell_y, &cell_z, &cell_alpha, &cell_beta, &cell_gamma);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:123:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
fscanf(fd, " %s %f", keyWord, &prod);
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:128:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
fscanf(fd, " %s %f", keyWord, &plus);
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:135:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
fscanf(fd, " %s %f", keyWord, &sigma);
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -fwrapv -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/carplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function 'read_car_timestep':
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:326:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, LINESIZE, data->file);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:339:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, LINESIZE, data->file);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:344:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, LINESIZE, data->file);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:349:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, LINESIZE, data->file);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:363:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, LINESIZE, data->file);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:373:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, LINESIZE, data->file);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function 'read_car_structure':
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:266:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, LINESIZE, data->file);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:268:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, LINESIZE, data->file);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:272:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, LINESIZE, data->file);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:295:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, LINESIZE, data->file);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:305:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, LINESIZE, data->file);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function 'open_car_read':
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:169:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, LINESIZE, fd);
^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:179:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, LINESIZE, fd);
^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:182:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, LINESIZE, fd);
^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:210:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, LINESIZE, fd);
^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:213:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, LINESIZE, fd);
^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:224:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, LINESIZE, fd);
^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:226:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, LINESIZE, fd);
^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:230:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, LINESIZE, fd);
^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:234:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, LINESIZE, fd);
^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:245:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, LINESIZE, fd);
^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function 'read_car_structure':
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:29: warning: '%d' directive writing between 1 and 11 bytes into a region of size 8 [-Wformat-overflow=]
sprintf(atom->resname, "%d", resid);
^~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:28: note: directive argument in the range [-2147483648, 9999999]
sprintf(atom->resname, "%d", resid);
^~~~
In file included from /usr/include/stdio.h:862,
from contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:85:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 2 and 12 bytes into a destination of size 8
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp: In function 'int read_ccp4_data(void*, int, float*, float*)':
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:495:58: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare]
if ( fread(rowdata, sizeof(char), extent[0], fd) != extent[0] ) {
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:525:67: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare]
if ( fread(rowdata, sizeof(unsigned char), extent[0], fd) != extent[0] ) {
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:556:58: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare]
if (fread(rowdata, sizeof(float), extent[0], fd) != extent[0] ) {
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:588:58: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare]
if (fread(rowdata, sizeof(short), extent[0], fd) != extent[0] ) {
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:623:67: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare]
if (fread(rowdata, sizeof(unsigned short), extent[0], fd) != extent[0] ) {
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:655:60: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare]
if ( fread(rowdata, sizeof(uchar3), extent[0], fd) != extent[0] ) {
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp: In function 'void* open_ccp4_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:304:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(symData, 81, fd);
~~~~~^~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:42:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: 'void swap8_aligned(void*, long int)' defined but not used [-Wunused-function]
static void swap8_aligned(void *v, long ndata) {
^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: 'void swap8_unaligned(void*, long int)' defined but not used [-Wunused-function]
static void swap8_unaligned(void *v, long ndata) {
^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: 'void swap4_unaligned(void*, long int)' defined but not used [-Wunused-function]
static void swap4_unaligned(void *v, long ndata) {
^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'void swap2_unaligned(void*, long int)' defined but not used [-Wunused-function]
static void swap2_unaligned(void *v, long ndata) {
^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp: In function 'void* open_ccp4_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:287:42: warning: 'dataOffset' may be used uninitialized in this function [-Wmaybe-uninitialized]
} else if ((dataOffset > CCP4HDSIZE) && (dataOffset < (1024*1024))) {
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -fwrapv -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/corplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -fwrapv -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp: In function 'void* open_cube_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:175:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(readbuf, 1023, cube->fd); // go on to next line
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:181:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(readbuf, 1023, cube->fd); // skip second header line
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:324:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(readbuf, 1023, cube->fd);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:335:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(readbuf, 1023, cube->fd);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:337:11: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
fscanf(cube->fd, "%d", &cube->nsets);
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:342:13: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
fscanf(cube->fd, "%d", &orb);
~~~~~~^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:347:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(readbuf, 1023, cube->fd); // gobble up rest of line
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:42:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'int get_pte_idx_from_string(const char*)' defined but not used [-Wunused-function]
static int get_pte_idx_from_string(const char *label) {
^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: 'int get_pte_idx(const char*)' defined but not used [-Wunused-function]
static int get_pte_idx(const char *label)
^~~~~~~~~~~
i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -fwrapv -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
In file included from contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:51:
contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function 'fio_fread':
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:435:35: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'fio_size_t' {aka 'long long int'} [-Wformat=]
printf("fio_fread(): rc %ld sz: %ld\n", rc, size);
~~^ ~~
%lld
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:435:44: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'fio_size_t' {aka 'long long int'} [-Wformat=]
printf("fio_fread(): rc %ld sz: %ld\n", rc, size);
~~^ ~~~~
%lld
contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function 'fio_fwrite':
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:36: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'fio_size_t' {aka 'long long int'} [-Wformat=]
printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n",
~~^
%lld
rc, size, szleft, writecalls);
~~
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:45: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'fio_size_t' {aka 'long long int'} [-Wformat=]
printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n",
~~^
%lld
rc, size, szleft, writecalls);
~~~~
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:58: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'fio_size_t' {aka 'long long int'} [-Wformat=]
printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n",
~~^
%lld
rc, size, szleft, writecalls);
~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c: In function 'read_dcdstep':
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:546:16: warning: variable 'readlen' set but not used [-Wunused-but-set-variable]
fio_size_t readlen; /* number of bytes actually read */
^~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:60:
At top level:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: 'swap2_aligned' defined but not used [-Wunused-function]
static void swap2_aligned(void *v, long ndata) {
^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'swap2_unaligned' defined but not used [-Wunused-function]
static void swap2_unaligned(void *v, long ndata) {
^~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:51:
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:609:12: warning: 'fio_write_str' defined but not used [-Wunused-function]
static int fio_write_str(fio_fd fd, const char *str) {
^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:605:12: warning: 'fio_read_int32' defined but not used [-Wunused-function]
static int fio_read_int32(fio_fd fd, int *i) {
^~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:459:19: warning: 'fio_readv' defined but not used [-Wunused-function]
static fio_size_t fio_readv(fio_fd fd, const fio_iovec * iov, int iovcnt) {
^~~~~~~~~
i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -fwrapv -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function 'read_dlpoly_config_structure':
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:292:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
if (NULL == fgets(fbuffer, 1024, data->file))
^~
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:295:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
if (NULL == fgets(fbuffer, 1024, data->file))
^~
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function 'read_dlpoly_config_timestep':
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:669:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
fgets(fbuffer, 1024, data->file);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function 'read_dlpoly_timestep':
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:554:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
fgets(fbuffer, 1024, data->file);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function 'int read_dsn6_data(void*, int, float*, float*)':
contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:233:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(brick, sizeof(char), 512, fd);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function 'void* open_dsn6_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:91:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(fileHeader, sizeof(short), 19, fd);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:63:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: 'void swap8_aligned(void*, long int)' defined but not used [-Wunused-function]
static void swap8_aligned(void *v, long ndata) {
^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:110:13: warning: 'void swap4_aligned(void*, long int)' defined but not used [-Wunused-function]
static void swap4_aligned(void *v, long ndata) {
^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: 'void swap8_unaligned(void*, long int)' defined but not used [-Wunused-function]
static void swap8_unaligned(void *v, long ndata) {
^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: 'void swap4_unaligned(void*, long int)' defined but not used [-Wunused-function]
static void swap4_unaligned(void *v, long ndata) {
^~~~~~~~~~~~~~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
In file included from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:71:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: 'void swap8_aligned(void*, long int)' defined but not used [-Wunused-function]
static void swap8_aligned(void *v, long ndata) {
^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:110:13: warning: 'void swap4_aligned(void*, long int)' defined but not used [-Wunused-function]
static void swap4_aligned(void *v, long ndata) {
^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: 'void swap2_aligned(void*, long int)' defined but not used [-Wunused-function]
static void swap2_aligned(void *v, long ndata) {
^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'void swap2_unaligned(void*, long int)' defined but not used [-Wunused-function]
static void swap2_unaligned(void *v, long ndata) {
^~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:70:
contrib/uiuc/plugins/molfile_plugin/src/vmddir.h:145:12: warning: 'int vmd_file_is_executable(const char*)' defined but not used [-Wunused-function]
static int vmd_file_is_executable(const char * filename) {
^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'std::__cxx11::string framefile(const string&, size_t, size_t, int, int)':
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:675:22: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=]
sprintf(answer, "%03x/", d1);
^~~~~~~
In file included from /usr/include/stdio.h:862,
from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx:56,
from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:47:
/usr/include/bits/stdio2.h:33:34: note: '__builtin___sprintf_chk' output between 5 and 10 bytes into a destination of size 9
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:673:22: warning: '%03x' directive writing between 3 and 8 bytes into a region of size between 0 and 5 [-Wformat-overflow=]
sprintf(answer, "%03x/%03x/", d1, d2);
^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:673:22: note: directive argument in the range [0, 2147483646]
In file included from /usr/include/stdio.h:862,
from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx:56,
from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:47:
/usr/include/bits/stdio2.h:33:34: note: '__builtin___sprintf_chk' output between 9 and 19 bytes into a destination of size 9
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'void DDmkdir(const string&, mode_t, int, int)':
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:714:15: warning: '%03x' directive writing between 3 and 8 bytes into a region of size 6 [-Wformat-overflow=]
sprintf(sub, "%03x/", i);
^~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:714:15: note: directive argument in the range [0, 2147483647]
In file included from /usr/include/stdio.h:862,
from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx:56,
from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:47:
/usr/include/bits/stdio2.h:33:34: note: '__builtin___sprintf_chk' output between 5 and 10 bytes into a destination of size 6
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:722:22: warning: '%03x' directive writing between 3 and 8 bytes into a region of size 6 [-Wformat-overflow=]
sprintf(subsub, "%03x", j);
^~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:722:22: note: directive argument in the range [0, 2147483647]
In file included from /usr/include/stdio.h:862,
from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx:56,
from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:47:
/usr/include/bits/stdio2.h:33:34: note: '__builtin___sprintf_chk' output between 4 and 9 bytes into a destination of size 6
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dxplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp: In function 'int read_edm_data(void*, int, float*, float*)':
contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:240:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(readbuf, 13, edm->fd);
~~~~~^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp: In function 'void eatline(FILE*)':
contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:44:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(readbuf, 1024, fd); // go on to next line
~~~~~^~~~~~~~~~~~~~~~~~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp: In function 'void* open_fs4_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp:79:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&dataBegin, sizeof(int), 1, fd);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp:48:
contrib/uiuc/plugins/molfile_plugin/src/fortread.h: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:133:13: warning: 'void strnwscpy(char*, const char*, int)' defined but not used [-Wunused-function]
static void strnwscpy(char *target, const char *source, const int len) {
^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:55:12: warning: 'int fort_get_endian_reclen(int, int, int, int*, int*)' defined but not used [-Wunused-function]
static int fort_get_endian_reclen(int reclen, int word0, int word1,
^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:36:12: warning: 'int fort_eat_recmark(FILE*, int)' defined but not used [-Wunused-function]
static int fort_eat_recmark(FILE *ifp, int recmarklen) {
^~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp:47:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: 'void swap8_aligned(void*, long int)' defined but not used [-Wunused-function]
static void swap8_aligned(void *v, long ndata) {
^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: 'void swap2_aligned(void*, long int)' defined but not used [-Wunused-function]
static void swap2_aligned(void *v, long ndata) {
^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: 'void swap8_unaligned(void*, long int)' defined but not used [-Wunused-function]
static void swap8_unaligned(void *v, long ndata) {
^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: 'void swap4_unaligned(void*, long int)' defined but not used [-Wunused-function]
static void swap4_unaligned(void *v, long ndata) {
^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'void swap2_unaligned(void*, long int)' defined but not used [-Wunused-function]
static void swap2_unaligned(void *v, long ndata) {
^~~~~~~~~~~~~~~
i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -fwrapv -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'have_gamess':
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1106:8: warning: variable 'word' set but not used [-Wunused-but-set-variable]
char word[3][BUFSIZ];
^~~~
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'get_basis_stats':
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:2264:8: warning: variable 'word' set but not used [-Wunused-but-set-variable]
char word[7][BUFSIZ];
^~~~
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'get_wavefunction':
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:3573:8: warning: variable 'word' set but not used [-Wunused-but-set-variable]
char word[6][BUFSIZ];
^~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function 'eatline':
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:840:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
fgets(readbuf, 1024, fd);
^~~~~~~~~~~~~~~~~~~~~~~~
At top level:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1002:13: warning: 'print_input_data' defined but not used [-Wunused-function]
static void print_input_data(qmdata_t *data) {
^~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:162:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: 'get_pte_idx' defined but not used [-Wunused-function]
static int get_pte_idx(const char *label)
^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:109:14: warning: 'get_pte_vdw_radius' defined but not used [-Wunused-function]
static float get_pte_vdw_radius(const int idx)
^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:102:14: warning: 'get_pte_mass' defined but not used [-Wunused-function]
static float get_pte_mass(const int idx)
^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:95:20: warning: 'get_pte_label' defined but not used [-Wunused-function]
static const char *get_pte_label(const int idx)
^~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1097:13: warning: 'whereami' defined but not used [-Wunused-function]
static void whereami(FILE *file) {
^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1077:13: warning: 'thisline' defined but not used [-Wunused-function]
static void thisline(FILE *file) {
^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1028:12: warning: 'fpexpftoc' defined but not used [-Wunused-function]
static int fpexpftoc(char *ftocstr) {
^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:901:14: warning: 'strtoupper' defined but not used [-Wunused-function]
static char *strtoupper(char *s) {
^~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:895:12: warning: 'iswhiteline' defined but not used [-Wunused-function]
static int iswhiteline(char *s) {
^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:585:13: warning: 'print_matrix4' defined but not used [-Wunused-function]
static void print_matrix4(const float mat[16]) {
^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'get_basis_options':
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1398:41: warning: '%s' directive writing up to 8191 bytes into a region of size 8190 [-Wformat-overflow=]
sprintf(data->basis_string, "%d-%s%sG%s",
^~
ngauss, (data->gbasis+1), diffuse,
~~~~~~~
In file included from /usr/include/stdio.h:862,
from contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:27,
from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output 4 or more bytes (assuming 16386) into a destination of size 8192
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1394:43: warning: '%s' directive writing up to 8191 bytes into a region of size between 8176 and 8186 [-Wformat-overflow=]
sprintf(data->basis_string, "STO-%dG%s%s",
^~
ngauss, diffuse, polarization);
~~~~~~~
In file included from /usr/include/stdio.h:862,
from contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:27,
from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160:
/usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 7 and 16399 bytes into a destination of size 8192
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp: In function 'void line3(FILE*, GRASSP*)':
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:186:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(line3, 1, 80, infile);
~~~~~^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp: In function 'int read_rawgraphics(void*, int*, const molfile_graphics_t**)':
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
#define TRASH fread(trash, 4, 1, infile)
~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:284:3: note: in expansion of macro 'TRASH'
TRASH;
^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:285:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(line, 1, 80, infile);
~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
#define TRASH fread(trash, 4, 1, infile)
~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:291:3: note: in expansion of macro 'TRASH'
TRASH;
^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
#define TRASH fread(trash, 4, 1, infile)
~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:305:3: note: in expansion of macro 'TRASH'
TRASH;
^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:306:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(line, 1, 80, infile);
~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
#define TRASH fread(trash, 4, 1, infile)
~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:307:3: note: in expansion of macro 'TRASH'
TRASH;
^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
#define TRASH fread(trash, 4, 1, infile)
~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:311:3: note: in expansion of macro 'TRASH'
TRASH;
^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
#define TRASH fread(trash, 4, 1, infile)
~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:313:3: note: in expansion of macro 'TRASH'
TRASH;
^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
#define TRASH fread(trash, 4, 1, infile)
~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:318:3: note: in expansion of macro 'TRASH'
TRASH;
^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:319:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(line, 1, 80, infile);
~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
#define TRASH fread(trash, 4, 1, infile)
~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:320:3: note: in expansion of macro 'TRASH'
TRASH;
^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
#define TRASH fread(trash, 4, 1, infile)
~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:328:3: note: in expansion of macro 'TRASH'
TRASH;
^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:329:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(line, 1, 80, infile);
~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
#define TRASH fread(trash, 4, 1, infile)
~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:330:3: note: in expansion of macro 'TRASH'
TRASH;
^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
#define TRASH fread(trash, 4, 1, infile)
~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:354:3: note: in expansion of macro 'TRASH'
TRASH;
^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:355:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(vertex, 3 * sizeof(float), nvert, infile);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
#define TRASH fread(trash, 4, 1, infile)
~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:356:3: note: in expansion of macro 'TRASH'
TRASH;
^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
#define TRASH fread(trash, 4, 1, infile)
~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:357:3: note: in expansion of macro 'TRASH'
TRASH;
^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:358:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(access, 3 * sizeof(float), nvert, infile);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
#define TRASH fread(trash, 4, 1, infile)
~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:359:3: note: in expansion of macro 'TRASH'
TRASH;
^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
#define TRASH fread(trash, 4, 1, infile)
~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:360:3: note: in expansion of macro 'TRASH'
TRASH;
^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:361:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(normal, 3 * sizeof(float), nvert, infile);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
#define TRASH fread(trash, 4, 1, infile)
~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:362:3: note: in expansion of macro 'TRASH'
TRASH;
^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
#define TRASH fread(trash, 4, 1, infile)
~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:371:5: note: in expansion of macro 'TRASH'
TRASH;
^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:372:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(triangle, 3 * sizeof(int), ntriangles, infile);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
#define TRASH fread(trash, 4, 1, infile)
~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:373:5: note: in expansion of macro 'TRASH'
TRASH;
^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
#define TRASH fread(trash, 4, 1, infile)
~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:374:5: note: in expansion of macro 'TRASH'
TRASH;
^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:375:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(properties, 3 * sizeof(float), nvert, infile);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
#define TRASH fread(trash, 4, 1, infile)
~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:394:5: note: in expansion of macro 'TRASH'
TRASH;
^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:395:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(striangle, sizeof(short), 3 * ntriangles, infile);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
#define TRASH fread(trash, 4, 1, infile)
~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:396:5: note: in expansion of macro 'TRASH'
TRASH;
^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
#define TRASH fread(trash, 4, 1, infile)
~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:397:5: note: in expansion of macro 'TRASH'
TRASH;
^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:398:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(properties, sizeof(float), 3 * nvert, infile);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:40:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: 'void swap8_aligned(void*, long int)' defined but not used [-Wunused-function]
static void swap8_aligned(void *v, long ndata) {
^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: 'void swap8_unaligned(void*, long int)' defined but not used [-Wunused-function]
static void swap8_unaligned(void *v, long ndata) {
^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: 'void swap4_unaligned(void*, long int)' defined but not used [-Wunused-function]
static void swap4_unaligned(void *v, long ndata) {
^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'void swap2_unaligned(void*, long int)' defined but not used [-Wunused-function]
static void swap2_unaligned(void *v, long ndata) {
^~~~~~~~~~~~~~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
In file included from contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp:51:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: 'void swap8_aligned(void*, long int)' defined but not used [-Wunused-function]
static void swap8_aligned(void *v, long ndata) {
^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: 'void swap2_aligned(void*, long int)' defined but not used [-Wunused-function]
static void swap2_aligned(void *v, long ndata) {
^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: 'void swap8_unaligned(void*, long int)' defined but not used [-Wunused-function]
static void swap8_unaligned(void *v, long ndata) {
^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: 'void swap4_unaligned(void*, long int)' defined but not used [-Wunused-function]
static void swap4_unaligned(void *v, long ndata) {
^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'void swap2_unaligned(void*, long int)' defined but not used [-Wunused-function]
static void swap2_unaligned(void *v, long ndata) {
^~~~~~~~~~~~~~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp: In function 'void* open_grid_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp:84:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&dataBegin, sizeof(int), 1, fd);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp:60:
contrib/uiuc/plugins/molfile_plugin/src/fortread.h: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:133:13: warning: 'void strnwscpy(char*, const char*, int)' defined but not used [-Wunused-function]
static void strnwscpy(char *target, const char *source, const int len) {
^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:55:12: warning: 'int fort_get_endian_reclen(int, int, int, int*, int*)' defined but not used [-Wunused-function]
static int fort_get_endian_reclen(int reclen, int word0, int word1,
^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:36:12: warning: 'int fort_eat_recmark(FILE*, int)' defined but not used [-Wunused-function]
static int fort_eat_recmark(FILE *ifp, int recmarklen) {
^~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp:59:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: 'void swap8_aligned(void*, long int)' defined but not used [-Wunused-function]
static void swap8_aligned(void *v, long ndata) {
^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: 'void swap2_aligned(void*, long int)' defined but not used [-Wunused-function]
static void swap2_aligned(void *v, long ndata) {
^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: 'void swap8_unaligned(void*, long int)' defined but not used [-Wunused-function]
static void swap8_unaligned(void *v, long ndata) {
^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: 'void swap4_unaligned(void*, long int)' defined but not used [-Wunused-function]
static void swap4_unaligned(void *v, long ndata) {
^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'void swap2_unaligned(void*, long int)' defined but not used [-Wunused-function]
static void swap2_unaligned(void *v, long ndata) {
^~~~~~~~~~~~~~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
In file included from contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp:30:
contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h: In function 'int mdio_readline(md_file*, char*, int, int)':
contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:426:7: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(buf, n, mf->f);
~~~~~^~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:48,
from contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp:30:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: 'void swap2_aligned(void*, long int)' defined but not used [-Wunused-function]
static void swap2_aligned(void *v, long ndata) {
^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: 'void swap8_unaligned(void*, long int)' defined but not used [-Wunused-function]
static void swap8_unaligned(void *v, long ndata) {
^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: 'void swap4_unaligned(void*, long int)' defined but not used [-Wunused-function]
static void swap4_unaligned(void *v, long ndata) {
^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'void swap2_unaligned(void*, long int)' defined but not used [-Wunused-function]
static void swap2_unaligned(void *v, long ndata) {
^~~~~~~~~~~~~~~
i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -fwrapv -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/hash.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/hash.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -fwrapv -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/inthash.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/inthash.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -fwrapv -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
In file included from contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:79:
contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function 'fio_fread':
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:435:35: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'fio_size_t' {aka 'long long int'} [-Wformat=]
printf("fio_fread(): rc %ld sz: %ld\n", rc, size);
~~^ ~~
%lld
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:435:44: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'fio_size_t' {aka 'long long int'} [-Wformat=]
printf("fio_fread(): rc %ld sz: %ld\n", rc, size);
~~^ ~~~~
%lld
contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function 'fio_fwrite':
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:36: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'fio_size_t' {aka 'long long int'} [-Wformat=]
printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n",
~~^
%lld
rc, size, szleft, writecalls);
~~
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:45: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'fio_size_t' {aka 'long long int'} [-Wformat=]
printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n",
~~^
%lld
rc, size, szleft, writecalls);
~~~~
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:58: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'fio_size_t' {aka 'long long int'} [-Wformat=]
printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n",
~~^
%lld
rc, size, szleft, writecalls);
~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:89:
At top level:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: 'swap8_unaligned' defined but not used [-Wunused-function]
static void swap8_unaligned(void *v, long ndata) {
^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: 'swap4_unaligned' defined but not used [-Wunused-function]
static void swap4_unaligned(void *v, long ndata) {
^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'swap2_unaligned' defined but not used [-Wunused-function]
static void swap2_unaligned(void *v, long ndata) {
^~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:79:
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:459:19: warning: 'fio_readv' defined but not used [-Wunused-function]
static fio_size_t fio_readv(fio_fd fd, const fio_iovec * iov, int iovcnt) {
^~~~~~~~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp: In function 'int {anonymous}::write_structure(void*, int, const molfile_atom_t*)':
contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp:1890:9: warning: unused variable 'last_ctnumber' [-Wunused-variable]
int last_ctnumber = -1;
^~~~~~~~~~~~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/mapplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function 'int read_mdf_bonds(void*, int*, int**, int**, float**, int**, int*, char***)':
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:278:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, LINESIZE, mdf->file);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:297:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, LINESIZE, mdf->file);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:319:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, LINESIZE, mdf->file);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:357:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, LINESIZE, mdf->file);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function 'int read_mdf_structure(void*, int*, molfile_atom_t*)':
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:223:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, LINESIZE, mdf->file);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:241:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, LINESIZE, mdf->file);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function 'void* open_mdf_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:164:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, LINESIZE, fd);
~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:176:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, LINESIZE, fd);
~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:183:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, LINESIZE, fd);
~~~~~^~~~~~~~~~~~~~~~~~~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function 'int read_mol2_timestep(void*, int, molfile_timestep_t*)':
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:275:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, LINESIZE, mol2->file);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:289:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, LINESIZE, mol2->file);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function 'int read_mol2_bonds_aux(void*, int*, int**, int**, float**)':
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:199:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, LINESIZE, mol2->file);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:209:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, LINESIZE, mol2->file);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function 'int read_mol2(void*, int*, molfile_atom_t*)':
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:127:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, LINESIZE, mol2->file);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:138:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, LINESIZE, mol2->file);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function 'void* open_mol2_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:74:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, LINESIZE, fd);
~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:81:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, LINESIZE, fd); // Read and ignore the mol_name
~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:82:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, LINESIZE, fd); // Read the molecule info
~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:91:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, LINESIZE, fd); // Read and ignore the mol_type
~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:92:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, LINESIZE, fd); // Read the charge_type
~~~~~^~~~~~~~~~~~~~~~~~~~
i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -fwrapv -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function 'read_molden_rundata':
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:596:25: warning: variable 'hessian_data' set but not used [-Wunused-but-set-variable]
molfile_qm_hessian_t *hessian_data;
^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function 'count_orbitals':
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1165:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
fscanf(data->file, " Ene= %f\n", &orbenergy);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1166:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
fscanf(data->file, " Spin= %s\n", spin);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1167:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
fscanf(data->file, " Occup= %f\n", &occu);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:49:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function 'eatline':
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:840:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
fgets(readbuf, 1024, fd);
^~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function 'open_molden_read':
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:224:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
fscanf(data->file, "%d", &natm);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:49:
At top level:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1097:13: warning: 'whereami' defined but not used [-Wunused-function]
static void whereami(FILE *file) {
^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1077:13: warning: 'thisline' defined but not used [-Wunused-function]
static void thisline(FILE *file) {
^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1006:12: warning: 'have_keyline' defined but not used [-Wunused-function]
static int have_keyline(FILE *file, const char *keystring1,
^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:711:12: warning: 'symmetry_expand' defined but not used [-Wunused-function]
static int symmetry_expand(qm_atom_t **atoms, int numunique, int natoms,
^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:585:13: warning: 'print_matrix4' defined but not used [-Wunused-function]
static void print_matrix4(const float mat[16]) {
^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:507:13: warning: 'del_wavefunction' defined but not used [-Wunused-function]
static void del_wavefunction(qm_timestep_t *ts) {
^~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:490:13: warning: 'replace_wavefunction' defined but not used [-Wunused-function]
static void replace_wavefunction(qm_timestep_t *ts, int n) {
^~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:48:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: 'get_pte_idx' defined but not used [-Wunused-function]
static int get_pte_idx(const char *label)
^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:109:14: warning: 'get_pte_vdw_radius' defined but not used [-Wunused-function]
static float get_pte_vdw_radius(const int idx)
^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:102:14: warning: 'get_pte_mass' defined but not used [-Wunused-function]
static float get_pte_mass(const int idx)
^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:95:20: warning: 'get_pte_label' defined but not used [-Wunused-function]
static const char *get_pte_label(const int idx)
^~~~~~~~~~~~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp: In function 'int read_rawgraphics(void*, int*, const molfile_graphics_t**)':
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:91:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, 80, infile);
~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:116:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, 80, infile);
~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:132:9: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, 80, infile);
~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:149:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, 80, infile);
~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:155:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, 80, infile);
~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:161:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, 80, infile); //one more read to keep us in sync
~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:170:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, 80, infile);
~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:217:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, 80, infile);
~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:237:23: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, 80, infile);
~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:256:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, 80, infile);
~~~~~^~~~~~~~~~~~~~~~~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -fwrapv -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function 'read_next_timestep':
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:103:10: warning: variable 'numatoms' set but not used [-Wunused-but-set-variable]
int i, numatoms;
^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function 'open_namdbin_read':
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:78:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
fread(&filen, sizeof(namdbin_int32), 1, fd);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/offplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/offplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp: In function 'int read_parm7_structure(void*, int*, molfile_atom_t*)':
contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:78:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(buf, 85, file);
~~~~~^~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:25:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_atoms(const char*, int, molfile_atom_t*, FILE*)':
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:204:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(buf, 85, file);
~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_atype(const char*, int, molfile_atom_t*, FILE*)':
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:257:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(buf, 85, file);
~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_resnames(const char*, int, char*, FILE*)':
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:275:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(buf, 85, file);
~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_respointers(const char*, int, molfile_atom_t*, int, const char*, FILE*)':
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:289:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
fscanf(file, " %d", &cur);
~~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'parmstruct* read_parm7_header(FILE*)':
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:368:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(sdum, 512, file);
~~~~~^~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:371:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
fscanf(file, "%s\n", sdum); // "%FLAG"
~~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:378:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
fscanf(file, "%s\n", sdum); // "TITLE" or "CTITLE"
~~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:385:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
fscanf(file, "%s\n", sdum); // "FORMAT (20a4)"
~~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:399:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(prm->title, sizeof(prm->title), file);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:427:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(sdum, sizeof(sdum), file);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:439:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
fscanf(file,parm7,
~~~~~~^~~~~~~~~~~~
&prm->Natom, &prm->Ntypes, &prm->Nbonh, &prm->Nbona,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
&prm->Ntheth, &prm->Ntheta, &prm->Nphih, &prm->Nphia,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
&prm->Jparm, &prm->Nparm);
~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:443:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
fscanf(file, parm7,
~~~~~~^~~~~~~~~~~~~
&prm->Nnb, &prm->Nres, &prm->Mbona, &prm->Mtheta,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
&prm->Mphia, &prm->Numbnd, &prm->Numang, &prm->Mptra,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
&prm->Natyp, &prm->Nphb);
~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:447:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
fscanf(file, parm7, &prm->Ifpert, &prm->Nbper, &prm->Ngper,
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
&prm->Ndper, &prm->Mbper, &prm->Mgper, &prm->Mdper,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
&prm->IfBox, &prm->Nmxrs, &prm->IfCap);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:451:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
fscanf(file,"%8d",&prm->Numextra); //BB
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int read_parm7_flag(FILE*, const char*, const char*)':
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:79:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
fscanf(file, "%s\n", buf);
~~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:87:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
fscanf(file, "%s\n", buf);
~~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:97:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
fscanf(file, "%s\n", buf);
~~~~~~^~~~~~~~~~~~~~~~~~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
In file included from contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp:24:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h: In member function 'int {anonymous}::ReadPARM::readparm(FILE*)':
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:435:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
fscanf(file, " " DBLFMT, &prm->Charges[i]);
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:444:10: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
fscanf(file, " " DBLFMT, &prm->Masses[i]);
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:510:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
fscanf(file, " " DBLFMT, &prm->Rk[i]);
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:517:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
fscanf(file, " " DBLFMT, &prm->Req[i]);
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:524:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
fscanf(file, " " DBLFMT, &prm->Tk[i]);
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:531:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
fscanf(file, " " DBLFMT, &prm->Teq[i]);
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:538:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
fscanf(file, " " DBLFMT, &prm->Pk[i]);
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:545:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
fscanf(file, " " DBLFMT, &prm->Pn[i]);
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:552:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
fscanf(file, " " DBLFMT, &prm->Phase[i]);
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:559:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
fscanf(file, " " DBLFMT, &prm->Solty[i]);
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:567:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
fscanf(file, " " DBLFMT, &prm->Cn1[i]);
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:575:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
fscanf(file, " " DBLFMT, &prm->Cn2[i]);
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:756:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
fscanf(file, " " DBLFMT, &prm->HB12[i]);
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:763:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
fscanf(file, " " DBLFMT, &prm->HB6[i]);
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:771:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
fscanf(file, " " DBLFMT, &H[i]);
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:853:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
fscanf(file, " " DBLFMT " " DBLFMT " " DBLFMT,
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
&prm->Box[0], &prm->Box[1], &prm->Box[2]);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:867:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
fscanf(file, " %d " DBLFMT " " DBLFMT " " DBLFMT " " DBLFMT,
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
&prm->Natcap, &prm->Cutcap,
~~~~~~~~~~~~~~~~~~~~~~~~~~~
&prm->Xcap, &prm->Ycap, &prm->Zcap);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
In file included from contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp:53:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: 'void swap2_aligned(void*, long int)' defined but not used [-Wunused-function]
static void swap2_aligned(void *v, long ndata) {
^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: 'void swap8_unaligned(void*, long int)' defined but not used [-Wunused-function]
static void swap8_unaligned(void *v, long ndata) {
^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: 'void swap4_unaligned(void*, long int)' defined but not used [-Wunused-function]
static void swap4_unaligned(void *v, long ndata) {
^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'void swap2_unaligned(void*, long int)' defined but not used [-Wunused-function]
static void swap2_unaligned(void *v, long ndata) {
^~~~~~~~~~~~~~~
i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -fwrapv -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
In file included from contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:32:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: 'get_pte_idx' defined but not used [-Wunused-function]
static int get_pte_idx(const char *label)
^~~~~~~~~~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function 'int getUniqueResID(char*, int)':
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:443:7: warning: unused variable 'i' [-Wunused-variable]
int i, uid;
^
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function 'int parseStructureFaster(molfile_atom_t*, int*, pdbxParser*)':
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:484:47: warning: unused variable 'j' [-Wunused-variable]
int i, count, atomdata, pos, idx, xyzcount, j;
^
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:503:8: warning: unused variable 'oldChain' [-Wunused-variable]
char oldChain[8];
^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function 'bool readAngleBonds(molfile_atom_t*, pdbxParser*)':
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:803:7: warning: unused variable 'bondTable' [-Wunused-variable]
int bondTable[32];
^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:807:15: warning: unused variable 'j' [-Wunused-variable]
int i, pos, j, k;
^
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:811:8: warning: unused variable 'modelNum' [-Wunused-variable]
char modelNum[8];
^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:822:20: warning: unused variable 'atom' [-Wunused-variable]
molfile_atom_t * atom;
^~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:884:7: warning: unused variable 'test' [-Wunused-variable]
int test = parser->nbonds + bnum;
^~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function 'bool readRMSDBonds(molfile_atom_t*, pdbxParser*)':
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:984:7: warning: unused variable 'bondTable' [-Wunused-variable]
int bondTable[32];
^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:988:15: warning: unused variable 'j' [-Wunused-variable]
int i, pos, j, k;
^
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:991:8: warning: unused variable 'modelNum' [-Wunused-variable]
char modelNum[8];
^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:1002:20: warning: unused variable 'atom' [-Wunused-variable]
molfile_atom_t * atom;
^~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function 'void* open_file_write(const char*, const char*, int)':
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:1409:9: warning: unused variable 'fd' [-Wunused-variable]
FILE* fd;
^~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:313:14: warning: 'float stringToFloat(char*)' defined but not used [-Wunused-function]
static float stringToFloat(char * str) {
^~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:25:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: 'int get_pte_idx(const char*)' defined but not used [-Wunused-function]
static int get_pte_idx(const char *label)
^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:95:20: warning: 'const char* get_pte_label(int)' defined but not used [-Wunused-function]
static const char *get_pte_label(const int idx)
^~~~~~~~~~~~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp: In function 'int read_plt_data(void*, int, float*, float*)':
contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:143:51: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare]
if ( fread(datablock, sizeof(float), ndata, fd) != ndata ) {
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp: In function 'void* open_plt_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:69:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(intHeader, sizeof(int), 5, fd);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:82:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(floatHeader, sizeof(float), 6, fd);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:42:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: 'void swap8_aligned(void*, long int)' defined but not used [-Wunused-function]
static void swap8_aligned(void *v, long ndata) {
^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: 'void swap2_aligned(void*, long int)' defined but not used [-Wunused-function]
static void swap2_aligned(void *v, long ndata) {
^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: 'void swap8_unaligned(void*, long int)' defined but not used [-Wunused-function]
static void swap8_unaligned(void *v, long ndata) {
^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: 'void swap4_unaligned(void*, long int)' defined but not used [-Wunused-function]
static void swap4_unaligned(void *v, long ndata) {
^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'void swap2_unaligned(void*, long int)' defined but not used [-Wunused-function]
static void swap2_unaligned(void *v, long ndata) {
^~~~~~~~~~~~~~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
In file included from contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp:30:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'void put_element_ply(PlyFile*, void*)':
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:459:7: warning: unused variable 'i' [-Wunused-variable]
int i,j,k;
^
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'void ascii_get_element(PlyFile*, char*)':
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1407:7: warning: unused variable 'i' [-Wunused-variable]
int i,j,k;
^
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'void binary_get_element(PlyFile*, char*)':
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1541:7: warning: unused variable 'i' [-Wunused-variable]
int i,j,k;
^
contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp: In function 'int read_rawgraphics(void*, int*, const molfile_graphics_t**)':
contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp:107:17: warning: variable 'vert_other' set but not used [-Wunused-but-set-variable]
PlyOtherProp *vert_other=NULL;
^~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp:108:17: warning: variable 'face_other' set but not used [-Wunused-but-set-variable]
PlyOtherProp *face_other=NULL;
^~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp:30:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'void binary_get_element(PlyFile*, char*)':
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1629:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread (&len, sizeof(int), 1, fp);
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1631:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread (str, len, 1, fp);
~~~~~~^~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'void get_binary_item(FILE*, int, int*, unsigned int*, double*)':
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2057:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread (ptr, 1, 1, fp);
~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2063:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread (ptr, 1, 1, fp);
~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2069:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread (ptr, 2, 1, fp);
~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2075:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread (ptr, 2, 1, fp);
~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2081:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread (ptr, 4, 1, fp);
~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2087:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread (ptr, 4, 1, fp);
~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2093:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread (ptr, 4, 1, fp);
~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2099:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread (ptr, 8, 1, fp);
~~~~~~^~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp:27:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: 'void swap8_aligned(void*, long int)' defined but not used [-Wunused-function]
static void swap8_aligned(void *v, long ndata) {
^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:110:13: warning: 'void swap4_aligned(void*, long int)' defined but not used [-Wunused-function]
static void swap4_aligned(void *v, long ndata) {
^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: 'void swap2_aligned(void*, long int)' defined but not used [-Wunused-function]
static void swap2_aligned(void *v, long ndata) {
^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: 'void swap8_unaligned(void*, long int)' defined but not used [-Wunused-function]
static void swap8_unaligned(void *v, long ndata) {
^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: 'void swap4_unaligned(void*, long int)' defined but not used [-Wunused-function]
static void swap4_unaligned(void *v, long ndata) {
^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'void swap2_unaligned(void*, long int)' defined but not used [-Wunused-function]
static void swap2_unaligned(void *v, long ndata) {
^~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp:30:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'void ascii_get_element(PlyFile*, char*)':
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1477:19: warning: 'other_data' may be used uninitialized in this function [-Wmaybe-uninitialized]
store_array = (char **) (elem_data + prop->offset);
~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'void binary_get_element(PlyFile*, char*)':
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1634:14: warning: 'other_data' may be used uninitialized in this function [-Wmaybe-uninitialized]
item = elem_data + prop->offset;
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -fwrapv -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c: In function 'get_atom_radius':
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:166:16: warning: variable 'type' set but not used [-Wunused-but-set-variable]
char *name, *type;
^~~~
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:166:9: warning: variable 'name' set but not used [-Wunused-but-set-variable]
char *name, *type;
^~~~
i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -fwrapv -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
In file included from contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c:30:
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:103:12: warning: 'fortread_4' defined but not used [-Wunused-function]
static int fortread_4(void *dest, int n, int swap, FILE *fd) {
^~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:55:12: warning: 'fort_get_endian_reclen' defined but not used [-Wunused-function]
static int fort_get_endian_reclen(int reclen, int word0, int word1,
^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:36:12: warning: 'fort_eat_recmark' defined but not used [-Wunused-function]
static int fort_eat_recmark(FILE *ifp, int recmarklen) {
^~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/fortread.h:28,
from contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c:30:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: 'swap8_aligned' defined but not used [-Wunused-function]
static void swap8_aligned(void *v, long ndata) {
^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: 'swap2_aligned' defined but not used [-Wunused-function]
static void swap2_aligned(void *v, long ndata) {
^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: 'swap8_unaligned' defined but not used [-Wunused-function]
static void swap8_unaligned(void *v, long ndata) {
^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: 'swap4_unaligned' defined but not used [-Wunused-function]
static void swap4_unaligned(void *v, long ndata) {
^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'swap2_unaligned' defined but not used [-Wunused-function]
static void swap2_unaligned(void *v, long ndata) {
^~~~~~~~~~~~~~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -fwrapv -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c: In function 'open_rst_read':
contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:48:11: warning: variable 'timesteprst' set but not used [-Wunused-but-set-variable]
double timesteprst;
^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:67:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
fgets(title, 82, fd);
^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:70:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, 82, fd);
^~~~~~~~~~~~~~~~~~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/situsplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp: In function 'int read_spider_data(void*, int, float*, float*)':
contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp:286:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(datablock, total * sizeof(float), 1, fd);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp:36:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: 'void swap8_aligned(void*, long int)' defined but not used [-Wunused-function]
static void swap8_aligned(void *v, long ndata) {
^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: 'void swap2_aligned(void*, long int)' defined but not used [-Wunused-function]
static void swap2_aligned(void *v, long ndata) {
^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: 'void swap8_unaligned(void*, long int)' defined but not used [-Wunused-function]
static void swap8_unaligned(void *v, long ndata) {
^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: 'void swap4_unaligned(void*, long int)' defined but not used [-Wunused-function]
static void swap4_unaligned(void *v, long ndata) {
^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'void swap2_unaligned(void*, long int)' defined but not used [-Wunused-function]
static void swap2_unaligned(void *v, long ndata) {
^~~~~~~~~~~~~~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp: In function 'int read_rawgraphics(void*, int*, const molfile_graphics_t**)':
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:96:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, 80, infile);
~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:104:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, 80, infile);
~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:119:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, 80, infile);
~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:131:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, 80, infile);
~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:153:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, 80, infile);
~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:162:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, 80, infile);
~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:171:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, 80, infile);
~~~~~^~~~~~~~~~~~~~~~~~
i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -fwrapv -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp: In function 'void* open_uhbd_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:90:22: warning: variable 'o' set but not used [-Wunused-but-set-variable]
float orig[3], ra, o[3], s[3]; //xdelta[3], ydelta[3], zdelta[3];
^
contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:90:28: warning: variable 's' set but not used [-Wunused-but-set-variable]
float orig[3], ra, o[3], s[3]; //xdelta[3], ydelta[3], zdelta[3];
^
contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp: In function 'int read_uhbd_data(void*, int, float*, float*)':
contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:254:66: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare]
if (fread(datablock + z*xysize, sizeof(float), xysize, fd) != xysize) {
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp: In function 'void* open_uhbd_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:102:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&headersize, sizeof(int), 1, fd);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:47:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: 'void swap8_aligned(void*, long int)' defined but not used [-Wunused-function]
static void swap8_aligned(void *v, long ndata) {
^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: 'void swap2_aligned(void*, long int)' defined but not used [-Wunused-function]
static void swap2_aligned(void *v, long ndata) {
^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: 'void swap8_unaligned(void*, long int)' defined but not used [-Wunused-function]
static void swap8_unaligned(void *v, long ndata) {
^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'void swap2_unaligned(void*, long int)' defined but not used [-Wunused-function]
static void swap2_unaligned(void *v, long ndata) {
^~~~~~~~~~~~~~~
i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -fwrapv -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function 'read_vasp5xdatcar_timestep':
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:224:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
fgets(lineptr, LINESIZE, data->file);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function 'read_vasp5xdatcar_structure':
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:174:27: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
for (i = 0; i < 2; ++i) fgets(lineptr, LINESIZE, data->file);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:180:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
fgets(lineptr, LINESIZE, data->file);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:189:26: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
for (i = 0; i < 3; ++i) fgets(lineptr, LINESIZE, data->file);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:194:4: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
fgets(lineptr, LINESIZE, data->file);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:204:26: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
for (i = 0; i < 8; ++i) fgets(lineptr, LINESIZE, data->file);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function 'open_vasp5xdatcar_read':
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:69:27: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
for (i = 0; i < 5; ++i) fgets(lineptr, LINESIZE, data->file);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:72:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
fgets(lineptr, LINESIZE, data->file);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:77:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
fgets(lineptr, LINESIZE, data->file);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:40:
At top level:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'get_pte_idx_from_string' defined but not used [-Wunused-function]
static int get_pte_idx_from_string(const char *label) {
^~~~~~~~~~~~~~~~~~~~~~~
i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -fwrapv -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function 'read_vaspchgcar_data':
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:237:60: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
for (n = 0; n < data->numatoms + data->version + 5; ++n) fgets(lineptr, LINESIZE, data->file);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:282:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
fgets(lineptr, LINESIZE, data->file);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function 'read_vaspchgcar_metadata':
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:150:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
fgets(lineptr, LINESIZE, data->file);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function 'open_vaspchgcar_read':
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:71:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
fgets(lineptr, LINESIZE, data->file);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:75:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
fgets(lineptr, LINESIZE, data->file);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:81:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
fgets(lineptr, LINESIZE, data->file);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:92:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
fgets(lineptr, LINESIZE, data->file);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:103:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
fgets(lineptr, LINESIZE, data->file);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:131:44: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
for (i = 0; i < data->numatoms + 2; ++i) fgets(lineptr, LINESIZE, data->file);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:41:
At top level:
contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:111:13: warning: 'vasp_timestep_unitcell' defined but not used [-Wunused-function]
static void vasp_timestep_unitcell(molfile_timestep_t *ts, vasp_plugindata_t *data)
^~~~~~~~~~~~~~~~~~~~~~
i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -fwrapv -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function 'read_vaspoutcar_timestep':
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:239:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
fgets(lineptr, LINESIZE, data->file);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:242:2: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
fgets(lineptr, LINESIZE, data->file);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function 'read_vaspoutcar_structure':
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:204:9: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
fgets(lineptr, LINESIZE, data->file);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function 'open_vaspoutcar_read':
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:87:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
fgets(lineptr, LINESIZE, data->file);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:40:
At top level:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'get_pte_idx_from_string' defined but not used [-Wunused-function]
static int get_pte_idx_from_string(const char *label) {
^~~~~~~~~~~~~~~~~~~~~~~
i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -fwrapv -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function 'read_vaspparchg_data':
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:238:60: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
for (n = 0; n < data->numatoms + data->version + 5; ++n) fgets(lineptr, LINESIZE, data->file);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function 'read_vaspparchg_metadata':
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:150:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
fgets(lineptr, LINESIZE, data->file);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function 'open_vaspparchg_read':
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:71:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
fgets(lineptr, LINESIZE, data->file);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:75:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
fgets(lineptr, LINESIZE, data->file);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:81:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
fgets(lineptr, LINESIZE, data->file);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:92:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
fgets(lineptr, LINESIZE, data->file);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:103:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
fgets(lineptr, LINESIZE, data->file);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:131:44: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
for (i = 0; i < data->numatoms + 2; ++i) fgets(lineptr, LINESIZE, data->file);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:41:
At top level:
contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:111:13: warning: 'vasp_timestep_unitcell' defined but not used [-Wunused-function]
static void vasp_timestep_unitcell(molfile_timestep_t *ts, vasp_plugindata_t *data)
^~~~~~~~~~~~~~~~~~~~~~
i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -fwrapv -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function 'write_vaspposcar_timestep':
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:360:40: warning: argument to 'sizeof' in 'strncpy' call is the same expression as the source; did you mean to use the size of the destination? [-Wsizeof-pointer-memaccess]
strncpy(tmptype, atom->type, sizeof(atom->type));
^
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function 'read_vaspposcar_timestep':
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:232:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
fgets(lineptr, LINESIZE, data->file);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:237:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
fgets(lineptr, LINESIZE, data->file);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:246:43: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
for (i = 0; i < data->version - 2; ++i) fgets(lineptr, LINESIZE, data->file);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:249:35: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
if (tolower(lineptr[0]) == 's') fgets(lineptr, LINESIZE, data->file);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:256:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
fgets(lineptr, LINESIZE, data->file);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function 'read_vaspposcar_structure':
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:195:42: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
for (i = 0; i < data->version + 3; ++i) fgets(lineptr, LINESIZE, data->file);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:198:34: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
if (tolower(lineptr[0]) == 's') fgets(lineptr, LINESIZE, data->file);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:203:4: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
fgets(lineptr, LINESIZE, data->file);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function 'open_vaspposcar_read':
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:69:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
fgets(lineptr, LINESIZE, data->file);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:73:27: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
for (i = 0; i < 5; ++i) fgets(lineptr, LINESIZE, data->file);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:87:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
fgets(lineptr, LINESIZE, data->file);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:40:
At top level:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'get_pte_idx_from_string' defined but not used [-Wunused-function]
static int get_pte_idx_from_string(const char *label) {
^~~~~~~~~~~~~~~~~~~~~~~
i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -fwrapv -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function 'read_vaspxdatcar_timestep':
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:283:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
fgets(lineptr, LINESIZE, data->file);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function 'read_vaspxdatcar_structure':
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:228:27: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
for (i = 0; i < 4; ++i) fgets(lineptr, LINESIZE, data->file);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:233:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
fgets(lineptr, LINESIZE, data->file);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:237:32: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
for (i = 0; i < 2; ++i) fgets(lineptr, LINESIZE, data->file);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:252:44: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
for (i = 0; i < 10 - data->version; ++i) fgets(lineptr, LINESIZE, data->file);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function 'open_vaspxdatcar_read':
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:89:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
fgets(lineptr, LINESIZE, poscar);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:92:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
fgets(lineptr, LINESIZE, poscar);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:97:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
fgets(lineptr, LINESIZE, poscar);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:111:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
fgets(lineptr, LINESIZE, poscar);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:121:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
fgets(lineptr, LINESIZE, poscar);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:40:
At top level:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'get_pte_idx_from_string' defined but not used [-Wunused-function]
static int get_pte_idx_from_string(const char *label) {
^~~~~~~~~~~~~~~~~~~~~~~
i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -fwrapv -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c: In function 'read_vaspxml_structure':
contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:139:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
fgets(lineptr, LINESIZE, data->file);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:144:9: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
fgets(lineptr, LINESIZE, data->file);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c: In function 'open_vaspxml_read':
contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:86:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
fgets(lineptr, LINESIZE, data->file);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:92:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
fgets(lineptr, LINESIZE, data->file);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:47:
At top level:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'get_pte_idx_from_string' defined but not used [-Wunused-function]
static int get_pte_idx_from_string(const char *label) {
^~~~~~~~~~~~~~~~~~~~~~~
i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -fwrapv -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c: In function 'vtf_read_bonds':
contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:147:48: warning: '%s' directive argument is null [-Wformat-overflow=]
sprintf(message, "vtfplugin:%d: error: %s: \"%s\"\n",
^~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function 'int read_vtk_data(void*, int, float*, float*)':
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:276:45: warning: variable 'total' set but not used [-Wunused-but-set-variable]
int x, y, z, xsize, ysize, zsize, xysize, total;
^~~~~
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function 'int read_vtk_data_ex(void*, molfile_volumetric_readwrite_t*)':
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:338:45: warning: variable 'total' set but not used [-Wunused-but-set-variable]
int x, y, z, xsize, ysize, zsize, xysize, total;
^~~~~
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:371:15: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
fscanf(fd, "%lf %lf %lf", &vx, &vy, &vz);
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function 'int read_vtk_data(void*, int, float*, float*)':
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:306:15: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
fscanf(fd, "%lf %lf %lf", &vx, &vy, &vz);
~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:72:
contrib/uiuc/plugins/include/vmdconio.h: At global scope:
contrib/uiuc/plugins/include/vmdconio.h:56:12: warning: 'int vmdcon_printf(int, const char*, ...)' defined but not used [-Wunused-function]
static int vmdcon_printf(int lvl, const char *fmt, ...) {
^~~~~~~~~~~~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'int read_xbgf_timestep(void*, int, molfile_timestep_t*)':
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:288:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, LINESIZE, bgf->file);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:297:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, LINESIZE, bgf->file);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'int read_xbgf_bonds_aux(void*, int*, int**, int**, float**)':
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:365:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, LINESIZE, bgf->file);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:387:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, LINESIZE, bgf->file);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:395:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(nextline, LINESIZE, bgf->file);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:455:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, LINESIZE, bgf->file);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'int read_xbgf_structure(void*, int*, molfile_atom_t*)':
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:241:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, LINESIZE, bgf->file);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:250:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, LINESIZE, bgf->file);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'void* open_xbgf_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:72:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, LINESIZE, fd);
~~~~~^~~~~~~~~~~~~~~~~~~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function 'void eatline(FILE*)':
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:238:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(readbuf, 1024, fd); // go on to next line
~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function 'void* open_xsf_read(const char*, const char*, int*)':
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:408:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(readbuf, 256, xsf->fd);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:442:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(readbuf, 256, xsf->fd);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:444:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(readbuf, 256, xsf->fd);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:446:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(readbuf, 256, xsf->fd);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:448:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(readbuf, 256, xsf->fd);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:450:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(readbuf, 256, xsf->fd);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:473:22: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(readbuf, 256, xsf->fd);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:508:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(readbuf, 256, xsf->fd);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:37:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'int get_pte_idx_from_string(const char*)' defined but not used [-Wunused-function]
static int get_pte_idx_from_string(const char *label) {
^~~~~~~~~~~~~~~~~~~~~~~
i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -fwrapv -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c -o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
In file included from contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c:57:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'get_pte_idx_from_string' defined but not used [-Wunused-function]
static int get_pte_idx_from_string(const char *label) {
^~~~~~~~~~~~~~~~~~~~~~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Block.cpp -o build/temp.linux-i686-2.7/layer0/Block.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Crystal.cpp -o build/temp.linux-i686-2.7/layer0/Crystal.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Debug.cpp -o build/temp.linux-i686-2.7/layer0/Debug.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Deferred.cpp -o build/temp.linux-i686-2.7/layer0/Deferred.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Err.cpp -o build/temp.linux-i686-2.7/layer0/Err.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Feedback.cpp -o build/temp.linux-i686-2.7/layer0/Feedback.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Field.cpp -o build/temp.linux-i686-2.7/layer0/Field.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/File.cpp -o build/temp.linux-i686-2.7/layer0/File.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/GenericBuffer.cpp -o build/temp.linux-i686-2.7/layer0/GenericBuffer.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/GraphicsUtil.cpp -o build/temp.linux-i686-2.7/layer0/GraphicsUtil.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Isosurf.cpp -o build/temp.linux-i686-2.7/layer0/Isosurf.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Map.cpp -o build/temp.linux-i686-2.7/layer0/Map.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Match.cpp -o build/temp.linux-i686-2.7/layer0/Match.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Matrix.cpp -o build/temp.linux-i686-2.7/layer0/Matrix.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/MemoryDebug.cpp -o build/temp.linux-i686-2.7/layer0/MemoryDebug.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
layer0/MemoryDebug.cpp: In function 'void* VLADeleteRaw(void*, int, unsigned int)':
layer0/MemoryDebug.cpp:211:16: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
if(index < -old_size)
~~~~~~^~~~~~~~~~~
layer0/MemoryDebug.cpp:223:15: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
(index < vla->size) && ((count + index) <= vla->size)) {
~~~~~~^~~~~~~~~~~
layer0/MemoryDebug.cpp: In function 'void* VLAInsertRaw(void*, int, unsigned int)':
layer0/MemoryDebug.cpp:244:16: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
if(index < -old_size)
~~~~~~^~~~~~~~~~~
layer0/MemoryDebug.cpp:251:14: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
if(index > old_size)
~~~~~~^~~~~~~~~~
layer0/MemoryDebug.cpp:254:46: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
if((index >= 0) && (count > 0) && (index <= old_size)) {
~~~~~~^~~~~~~~~~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/MyPNG.cpp -o build/temp.linux-i686-2.7/layer0/MyPNG.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
layer0/MyPNG.cpp: In function 'int MyPNGWrite(const char*, const pymol::Image&, float, int, int, float, float, void*)':
layer0/MyPNG.cpp:300:20: warning: comparison of integer expressions of different signedness: 'png_uint_32' {aka 'unsigned int'} and 'int' [-Wsign-compare]
for(k = 0; k < height; k++)
~~^~~~~~~~
layer0/MyPNG.cpp:341:24: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
for(b = 0; b < height; b++) {
~~^~~~~~~~
layer0/MyPNG.cpp:342:26: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
for(a = 0; a < width; a++) {
~~^~~~~~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Parse.cpp -o build/temp.linux-i686-2.7/layer0/Parse.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Pixmap.cpp -o build/temp.linux-i686-2.7/layer0/Pixmap.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/ShaderMgr.cpp -o build/temp.linux-i686-2.7/layer0/ShaderMgr.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/ShaderPrg.cpp -o build/temp.linux-i686-2.7/layer0/ShaderPrg.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Sphere.cpp -o build/temp.linux-i686-2.7/layer0/Sphere.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Tetsurf.cpp -o build/temp.linux-i686-2.7/layer0/Tetsurf.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Texture.cpp -o build/temp.linux-i686-2.7/layer0/Texture.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Tracker.cpp -o build/temp.linux-i686-2.7/layer0/Tracker.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Triangle.cpp -o build/temp.linux-i686-2.7/layer0/Triangle.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Util.cpp -o build/temp.linux-i686-2.7/layer0/Util.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Util2.cpp -o build/temp.linux-i686-2.7/layer0/Util2.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Vector.cpp -o build/temp.linux-i686-2.7/layer0/Vector.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Word.cpp -o build/temp.linux-i686-2.7/layer0/Word.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/os_gl.cpp -o build/temp.linux-i686-2.7/layer0/os_gl.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Basis.cpp -o build/temp.linux-i686-2.7/layer1/Basis.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/ButMode.cpp -o build/temp.linux-i686-2.7/layer1/ButMode.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
In file included from layer1/ButMode.cpp:22:
layer1/ButMode.cpp: In function 'void ButModeFree(PyMOLGlobals*)':
layer1/ButMode.cpp:144:14: warning: deleting object of polymorphic class type 'CButMode' which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
DeleteP(G->ButMode);
^~~~~~~
layer0/MemoryDebug.h:54:39: note: in definition of macro 'DeleteP'
#define DeleteP(ptr) {if(ptr) {delete ptr;ptr=NULL;}}
^~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/CGO.cpp -o build/temp.linux-i686-2.7/layer1/CGO.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
layer1/CGO.cpp: In function 'void CheckAttributesForUsage(const CGO*, AttribDataDesc&, AttribDataDesc&, CGO*, bool&)':
layer1/CGO.cpp:11001:28: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
for (auto idx = 0; idx < attrIdx; ++idx){
~~~~^~~~~~~~~
layer1/CGO.cpp: In function 'void PopulateOpsIntoStructuresForConversion(std::map<int, int>&, std::map<int, std::map<int, AttribOp*> >&, AttribDataDesc&, AttribDataDesc&, int&, bool)':
layer1/CGO.cpp:11079:37: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare]
if (attrOp->incr_vertices != vertsperpickinfo){
~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
layer1/CGO.cpp: In function 'CGO* CGOConvertToShader(const CGO*, AttribDataDesc&, AttribDataDesc&, int, GenericBuffer<34962>::buffer_layout, bool, int*, int, int)':
layer1/CGO.cpp:11381:36: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<AttribDesc>::size_type' {aka 'unsigned int'} [-Wsign-compare]
for (auto idx = 0; idx < attrData.size(); ++idx){
~~~~^~~~~~~~~~~~~~~~~
layer1/CGO.cpp:11393:36: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<AttribDesc>::size_type' {aka 'unsigned int'} [-Wsign-compare]
for (auto idx = 0; idx < attrData.size(); ++idx){
~~~~^~~~~~~~~~~~~~~~~
layer1/CGO.cpp:11402:33: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
for (int nxt = 0; nxt < attribOp->incr_vertices; ++nxt){
~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/COLLADA.cpp -o build/temp.linux-i686-2.7/layer1/COLLADA.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Character.cpp -o build/temp.linux-i686-2.7/layer1/Character.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Color.cpp -o build/temp.linux-i686-2.7/layer1/Color.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Control.cpp -o build/temp.linux-i686-2.7/layer1/Control.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
In file included from layer0/vla.h:7,
from layer2/ObjectMolecule.h:32,
from layer3/Executive.h:24,
from layer1/Control.cpp:26:
layer1/Control.cpp: In function 'void ControlFree(PyMOLGlobals*)':
layer1/Control.cpp:421:14: warning: deleting object of polymorphic class type 'CControl' which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
DeleteP(G->Control);
^~~~~~~
layer0/MemoryDebug.h:54:39: note: in definition of macro 'DeleteP'
#define DeleteP(ptr) {if(ptr) {delete ptr;ptr=NULL;}}
^~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Extrude.cpp -o build/temp.linux-i686-2.7/layer1/Extrude.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
layer1/Extrude.cpp: In function 'int ExtrudeCGOSurfaceTube(CExtrude*, CGO*, int, const float*, bool, int)':
layer1/Extrude.cpp:816:39: warning: 'stop' may be used uninitialized in this function [-Wmaybe-uninitialized]
if(color_override && (b > start) && (b < stop))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Font.cpp -o build/temp.linux-i686-2.7/layer1/Font.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/FontGLUT.cpp -o build/temp.linux-i686-2.7/layer1/FontGLUT.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/FontGLUT8x13.cpp -o build/temp.linux-i686-2.7/layer1/FontGLUT8x13.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/FontGLUT9x15.cpp -o build/temp.linux-i686-2.7/layer1/FontGLUT9x15.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/FontGLUTHel10.cpp -o build/temp.linux-i686-2.7/layer1/FontGLUTHel10.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/FontGLUTHel12.cpp -o build/temp.linux-i686-2.7/layer1/FontGLUTHel12.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/FontGLUTHel18.cpp -o build/temp.linux-i686-2.7/layer1/FontGLUTHel18.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/FontType.cpp -o build/temp.linux-i686-2.7/layer1/FontType.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Movie.cpp -o build/temp.linux-i686-2.7/layer1/Movie.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
layer1/Movie.cpp: In function 'void MovieSetCommand(PyMOLGlobals*, int, char*)':
layer1/Movie.cpp:1135:12: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
if(len > (sizeof(MovieCmdType) - 1))
~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer1/Movie.cpp: In function 'void MovieClearImages(PyMOLGlobals*)':
layer1/Movie.cpp:1498:7: warning: unused variable 'a' [-Wunused-variable]
int a;
^
In file included from layer0/OOMac.h:22,
from layer1/Movie.cpp:24:
layer1/Movie.cpp: In function 'void MovieFree(PyMOLGlobals*)':
layer1/Movie.cpp:1534:14: warning: deleting object of polymorphic class type 'CMovie' which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
DeleteP(G->Movie);
^~~~~
layer0/MemoryDebug.h:54:39: note: in definition of macro 'DeleteP'
#define DeleteP(ptr) {if(ptr) {delete ptr;ptr=NULL;}}
^~~
layer1/Movie.cpp: In member function 'virtual int CMovie::release(int, int, int, int)':
layer1/Movie.cpp:1742:24: warning: '%s' directive writing up to 1023 bytes into a region of size between 972 and 992 [-Wformat-overflow=]
sprintf(buffer,"cmd.mview('clear',first=%d,last=%d%s)",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1 + min_frame, 1 + max_frame, extra);
~~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer1/Movie.cpp:17:
/usr/include/bits/stdio2.h:33:34: note: '__builtin___sprintf_chk' output between 34 and 1077 bytes into a destination of size 1024
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer1/Movie.cpp:1728:24: warning: '%s' directive writing up to 1023 bytes into a region of size between 989 and 1009 [-Wformat-overflow=]
sprintf(buffer,"cmd.mcopy(%d,%d,%d%s)", 1+I->DragCurFrame, 1+I->DragStartFrame, 1, extra);
^~~~~~~~~~~~~~~~~~~~~~~ ~~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer1/Movie.cpp:17:
/usr/include/bits/stdio2.h:33:34: note: '__builtin___sprintf_chk' output between 17 and 1060 bytes into a destination of size 1024
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer1/Movie.cpp:1757:26: warning: '%s' directive writing up to 1023 bytes into a region of size between 991 and 1009 [-Wformat-overflow=]
sprintf(buffer,"cmd.mdelete(%d,%d%s)", I->DragStartFrame - I->DragCurFrame, first+1, extra);
^~~~~~~~~~~~~~~~~~~~~~ ~~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer1/Movie.cpp:17:
/usr/include/bits/stdio2.h:33:34: note: '__builtin___sprintf_chk' output between 17 and 1058 bytes into a destination of size 1024
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer1/Movie.cpp:1753:26: warning: '%s' directive writing up to 1023 bytes into a region of size between 991 and 1009 [-Wformat-overflow=]
sprintf(buffer,"cmd.minsert(%d,%d%s)", I->DragCurFrame - I->DragStartFrame, first, extra);
^~~~~~~~~~~~~~~~~~~~~~ ~~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer1/Movie.cpp:17:
/usr/include/bits/stdio2.h:33:34: note: '__builtin___sprintf_chk' output between 17 and 1058 bytes into a destination of size 1024
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer1/Movie.cpp:1714:24: warning: '%s' directive writing up to 1023 bytes into a region of size between 990 and 1009 [-Wformat-overflow=]
sprintf(buffer,"cmd.mmove(%d,%d,%d%s)", 1+I->DragCurFrame, 1+I->DragStartFrame, 1, extra);
^~~~~~~~~~~~~~~~~~~~~~~ ~~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer1/Movie.cpp:17:
/usr/include/bits/stdio2.h:33:34: note: '__builtin___sprintf_chk' output between 17 and 1059 bytes into a destination of size 1024
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer1/Movie.cpp: In function 'void MovieModalPNG(PyMOLGlobals*, CMovie*, CMovieModal*)':
layer1/Movie.cpp:806:11: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 221 [-Wformat-truncation=]
" MoviePNG-Error: unable to write '%s'\n", M->fname ENDFB(G);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer1/Movie.cpp:17:
/usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 37 and 1060 bytes into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Ortho.cpp -o build/temp.linux-i686-2.7/layer1/Ortho.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
layer1/Ortho.cpp: In function 'void bg_grad(PyMOLGlobals*)':
layer1/Ortho.cpp:1390:13: warning: unused variable 'buff_total' [-Wunused-variable]
int buff_total = bgImage->getWidth() * bgImage->getHeight();
^~~~~~~~~~
layer1/Ortho.cpp: In function 'void OrthoFree(PyMOLGlobals*)':
layer1/Ortho.cpp:2602:9: warning: unused variable 'a' [-Wunused-variable]
int a;
^
layer1/Ortho.cpp: At global scope:
layer1/Ortho.cpp:771:6: warning: 'void OrthoKeyCmmd(PyMOLGlobals*, unsigned char)' defined but not used [-Wunused-function]
void OrthoKeyCmmd(PyMOLGlobals * G, unsigned char k)
^~~~~~~~~~~~
In file included from /usr/include/string.h:508,
from /usr/include/python2.7/Python.h:38,
from layer0/os_python.h:34,
from layer1/Ortho.cpp:22:
In function 'char* strcat(char*, const char*)',
inlined from 'void OrthoSpecial(PyMOLGlobals*, int, int, int, int)' at layer1/Ortho.cpp:307:13:
/usr/include/bits/string_fortified.h:128:33: warning: 'char* __builtin_strcat(char*, const char*)' accessing 53 or more bytes at offsets [52, 261172] and [0, 2147483647] may overlap 1 byte at offset [52, 2147483647] [-Wrestrict]
return __builtin___strcat_chk (__dest, __src, __bos (__dest));
~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'char* strcat(char*, const char*)',
inlined from 'void OrthoSpecial(PyMOLGlobals*, int, int, int, int)' at layer1/Ortho.cpp:324:13:
/usr/include/bits/string_fortified.h:128:33: warning: 'char* __builtin_strcat(char*, const char*)' accessing 53 or more bytes at offsets [52, 261172] and [0, 2147483647] may overlap 1 byte at offset [52, 2147483647] [-Wrestrict]
return __builtin___strcat_chk (__dest, __src, __bos (__dest));
~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/P.cpp -o build/temp.linux-i686-2.7/layer1/P.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
layer1/P.cpp: In function 'int WrapperObjectAssignSubScript(PyObject*, PyObject*, PyObject*)':
layer1/P.cpp:804:23: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare]
if (strlen(valstr) > ap->maxlen){
~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/python2.7/Python.h:83,
from layer0/os_python.h:34,
from layer1/P.cpp:26:
layer1/P.cpp: In function 'void PInit(PyMOLGlobals*, int)':
/usr/include/python2.7/object.h:769:6: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
((PyObject*)(op))->ob_refcnt++)
~^~~~~~~~~~~~~~~~
layer1/P.cpp:2309:5: note: in expansion of macro 'Py_INCREF'
Py_INCREF(&Wrapper_Type);
^~~~~~~~~
/usr/include/python2.7/object.h:769:6: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
((PyObject*)(op))->ob_refcnt++)
~^~~~~~~~~~~~~~~~
layer1/P.cpp:2310:5: note: in expansion of macro 'Py_INCREF'
Py_INCREF(&settingWrapper_Type);
^~~~~~~~~
layer1/P.cpp: In function 'PyObject* PCatchIsAtty(PyObject*, PyObject*)':
/usr/include/python2.7/object.h:769:6: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
((PyObject*)(op))->ob_refcnt++)
~^~~~~~~~~~~~~~~~
/usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF'
#define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False
^~~~~~~~~
layer1/P.cpp:2813:3: note: in expansion of macro 'Py_RETURN_FALSE'
Py_RETURN_FALSE;
^~~~~~~~~~~~~~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/PConv.cpp -o build/temp.linux-i686-2.7/layer1/PConv.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
layer1/PConv.cpp:38: warning: "PyString_Check" redefined
#define PyString_Check(o) (PyBytes_CheckExact(o) || PyUnicode_Check(o))
In file included from /usr/include/python2.7/Python.h:97,
from layer0/os_python.h:34,
from layer1/PConv.cpp:17:
/usr/include/python2.7/stringobject.h:58: note: this is the location of the previous definition
#define PyString_Check(op) \
layer1/PConv.cpp: In function 'int PConvPyListToBitmask(PyObject*, int*, ov_size)':
layer1/PConv.cpp:89:20: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(int i = 0; i < ll; i++)
~~^~~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Pop.cpp -o build/temp.linux-i686-2.7/layer1/Pop.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
In file included from layer1/Pop.cpp:22:
layer1/Pop.cpp: In function 'void PopFree(PyMOLGlobals*)':
layer1/Pop.cpp:55:14: warning: deleting object of polymorphic class type 'CPop' which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
DeleteP(G->Pop);
^~~
layer0/MemoryDebug.h:54:39: note: in definition of macro 'DeleteP'
#define DeleteP(ptr) {if(ptr) {delete ptr;ptr=NULL;}}
^~~
layer1/Pop.cpp:54:9: warning: unused variable 'I' [-Wunused-variable]
CPop *I = G->Pop;
^
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/PyMOLObject.cpp -o build/temp.linux-i686-2.7/layer1/PyMOLObject.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Ray.cpp -o build/temp.linux-i686-2.7/layer1/Ray.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
layer1/Ray.cpp: In function 'void RayRender(CRay*, unsigned int*, double, float, int, unsigned int*)':
layer1/Ray.cpp:6077:17: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
if(x_stop > width)
~~~~~~~^~~~~~~
layer1/Ray.cpp:6079:17: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
if(y_stop > height)
~~~~~~~^~~~~~~~
layer1/Ray.cpp:6156:20: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
for(y = 0; y < height; y++)
~~^~~~~~~~
layer1/Ray.cpp:6157:22: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
for(x = 0; x < width; x++) {
~~^~~~~~~
layer1/Ray.cpp:6168:16: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
if(x < (width - 1)) {
~~^~~~~~~~~~~~~
layer1/Ray.cpp:6179:16: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
if(y < (height - 1)) {
~~^~~~~~~~~~~~~~
layer1/Ray.cpp:6242:26: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
for(y = 0; y < height; y++)
~~^~~~~~~~
layer1/Ray.cpp:6243:28: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
for(x = 0; x < width; x++) {
~~^~~~~~~
layer1/Ray.cpp:6253:24: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
if(x < (width - 1)) {
~~^~~~~~~~~~~~~
layer1/Ray.cpp:6265:24: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
if(y < (height - 1)) {
~~^~~~~~~~~~~~~~
layer1/Ray.cpp:6316:24: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
for(y = 0; y < height; y++){
~~^~~~~~~~
layer1/Ray.cpp:6336:26: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
for(x = 0; x < width; x++) {
~~^~~~~~~
layer1/Ray.cpp:6355:24: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
if(x < (width - 1)) {
~~^~~~~~~~~~~~~
layer1/Ray.cpp:6369:24: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
if(y < (height - 1)) {
~~^~~~~~~~~~~~~~
layer1/Ray.cpp:6383:30: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
if(x && (y < (height - 1))) {
~~^~~~~~~~~~~~~~
layer1/Ray.cpp:6390:30: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
if(y && (x < (width - 1))) {
~~^~~~~~~~~~~~~
layer1/Ray.cpp:6397:25: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
if((y < (height - 1)) && (x < (width - 1))) {
~~^~~~~~~~~~~~~~
layer1/Ray.cpp:6397:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
if((y < (height - 1)) && (x < (width - 1))) {
~~^~~~~~~~~~~~~
layer1/Ray.cpp:6553:20: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
for(y = 0; y < height; y++) {
~~^~~~~~~~
layer1/Ray.cpp:6554:15: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
for(x = 0; x < width; x++) {
~~^~~~~~~
layer1/Ray.cpp: In function 'void RayRenderVRML2(CRay*, int, int, char**, float, float, float, float, float)':
layer1/Ray.cpp:1547:19: warning: '%s' directive writing up to 1023 bytes into a region of size between 0 and 914 [-Wformat-overflow=]
"Transform {\n"
^~~~~~~~~~~~~~~
" translation %8.6f %8.6f %8.6f\n"
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
" rotation %8.6f %8.6f %8.6f %8.6f\n"
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
" children [\n"
~~~~~~~~~~~~~~~
"%s"
~~~~
" ]\n"
~~~~~~
"}\n",
~~~~~
layer1/Ray.cpp:1556:72:
vert2[2] - mid[2], axis[0], axis[1], axis[2], angle, geometry);
~~~~~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer1/Ray.cpp:17:
/usr/include/bits/stdio2.h:33:34: note: '__builtin___sprintf_chk' output between 116 and 2993 bytes into a destination of size 1024
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer1/Ray.cpp: In function 'int RayTraceThread(CRayThreadInfo*)':
layer1/Ray.cpp:3625:32: warning: 'hl' may be used uninitialized in this function [-Wmaybe-uninitialized]
compute_background_for_pixel(bkrd_uc, isOutsideInY,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
bg_image_mode, bg_image_tilesize, bg_rgb, bg_image_linear,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
(unsigned char*) T->bkrd_data, T->bgWidth, T->bgHeight,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
x, wr, hl, hpixelx, orig_opaque_back );
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Rep.cpp -o build/temp.linux-i686-2.7/layer1/Rep.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Scene.cpp -o build/temp.linux-i686-2.7/layer1/Scene.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
layer1/Scene.cpp: In function 'pymol::Image* SceneImagePrepare(PyMOLGlobals*, bool)':
layer1/Scene.cpp:1683:7: warning: unused variable 'ok' [-Wunused-variable]
int ok = true;
^~
layer1/Scene.cpp: In function 'int SceneClick(Block*, int, int, int, int, double)':
layer1/Scene.cpp:3885:24: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
if(atIndex == I->LastPicked.src.index)
~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
layer1/Scene.cpp:3908:22: warning: enumeration value 'cObjectMap' not handled in switch [-Wswitch]
switch (obj->type) {
^
layer1/Scene.cpp:3908:22: warning: enumeration value 'cObjectMesh' not handled in switch [-Wswitch]
layer1/Scene.cpp:3908:22: warning: enumeration value 'cObjectMeasurement' not handled in switch [-Wswitch]
layer1/Scene.cpp:3908:22: warning: enumeration value 'cObjectCallback' not handled in switch [-Wswitch]
layer1/Scene.cpp:3908:22: warning: enumeration value 'cObjectCGO' not handled in switch [-Wswitch]
layer1/Scene.cpp:3908:22: warning: enumeration value 'cObjectSurface' not handled in switch [-Wswitch]
layer1/Scene.cpp:3908:22: warning: enumeration value 'cObjectGadget' not handled in switch [-Wswitch]
layer1/Scene.cpp:3908:22: warning: enumeration value 'cObjectCalculator' not handled in switch [-Wswitch]
layer1/Scene.cpp:3908:22: warning: enumeration value 'cObjectSlice' not handled in switch [-Wswitch]
layer1/Scene.cpp:3908:22: warning: enumeration value 'cObjectAlignment' not handled in switch [-Wswitch]
layer1/Scene.cpp:3908:22: warning: enumeration value 'cObjectGroup' not handled in switch [-Wswitch]
layer1/Scene.cpp:3908:22: warning: enumeration value 'cObjectVolume' not handled in switch [-Wswitch]
layer1/Scene.cpp: In function 'int SceneDrag(Block*, int, int, int, double)':
layer1/Scene.cpp:4853:16: warning: enumeration value 'cObjectMolecule' not handled in switch [-Wswitch]
switch (obj->type) {
^
layer1/Scene.cpp:4853:16: warning: enumeration value 'cObjectMap' not handled in switch [-Wswitch]
layer1/Scene.cpp:4853:16: warning: enumeration value 'cObjectMesh' not handled in switch [-Wswitch]
layer1/Scene.cpp:4853:16: warning: enumeration value 'cObjectMeasurement' not handled in switch [-Wswitch]
layer1/Scene.cpp:4853:16: warning: enumeration value 'cObjectCallback' not handled in switch [-Wswitch]
layer1/Scene.cpp:4853:16: warning: enumeration value 'cObjectCGO' not handled in switch [-Wswitch]
layer1/Scene.cpp:4853:16: warning: enumeration value 'cObjectSurface' not handled in switch [-Wswitch]
layer1/Scene.cpp:4853:16: warning: enumeration value 'cObjectCalculator' not handled in switch [-Wswitch]
layer1/Scene.cpp:4853:16: warning: enumeration value 'cObjectSlice' not handled in switch [-Wswitch]
layer1/Scene.cpp:4853:16: warning: enumeration value 'cObjectAlignment' not handled in switch [-Wswitch]
layer1/Scene.cpp:4853:16: warning: enumeration value 'cObjectGroup' not handled in switch [-Wswitch]
layer1/Scene.cpp:4853:16: warning: enumeration value 'cObjectVolume' not handled in switch [-Wswitch]
layer1/Scene.cpp: In function 'void SceneFree(PyMOLGlobals*)':
layer1/Scene.cpp:5747:13: warning: deleting object of polymorphic class type 'CScene' which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
delete G->Scene;
^~~~~
layer1/Scene.cpp: In function 'void SceneDone(PyMOLGlobals*)':
layer1/Scene.cpp:5902:11: warning: unused variable 'I' [-Wunused-variable]
CScene *I = G->Scene;
^
layer1/Scene.cpp: In function 'int SceneClick(Block*, int, int, int, int, double)':
layer1/Scene.cpp:4005:22: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 242 [-Wformat-truncation=]
PRINTF " You clicked %s", buffer ENDF(G);
^~~~~~~~~~~~~~~~~ ~~~~~~
In file included from layer1/Ortho.h:34,
from layer1/Scene.h:23,
from layer1/Scene.cpp:34:
layer0/Feedback.h:265:53: note: 'snprintf' output between 14 and 1037 bytes into a destination of size 255
#define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
^
layer1/Scene.cpp:4005:15: note: in expansion of macro 'PRINTF'
PRINTF " You clicked %s", buffer ENDF(G);
^~~~~~
layer1/Scene.cpp:3873:20: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 242 [-Wformat-truncation=]
PRINTF " You clicked %s -> (%s)", buffer, cEditorSele1 ENDF(G);
^~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~
In file included from layer1/Ortho.h:34,
from layer1/Scene.h:23,
from layer1/Scene.cpp:34:
layer0/Feedback.h:265:53: note: 'snprintf' output between 23 and 1046 bytes into a destination of size 255
#define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
^
layer1/Scene.cpp:3873:13: note: in expansion of macro 'PRINTF'
PRINTF " You clicked %s -> (%s)", buffer, cEditorSele1 ENDF(G);
^~~~~~
layer1/Scene.cpp:3890:22: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 242 [-Wformat-truncation=]
PRINTF " You clicked %s -> (%s)", buffer, cEditorSele2 ENDF(G);
^~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~
In file included from layer1/Ortho.h:34,
from layer1/Scene.h:23,
from layer1/Scene.cpp:34:
layer0/Feedback.h:265:53: note: 'snprintf' output between 23 and 1046 bytes into a destination of size 255
#define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
^
layer1/Scene.cpp:3890:15: note: in expansion of macro 'PRINTF'
PRINTF " You clicked %s -> (%s)", buffer, cEditorSele2 ENDF(G);
^~~~~~
layer1/Scene.cpp:3898:31: warning: '%s' directive writing up to 1023 bytes into a region of size 1014 [-Wformat-overflow=]
sprintf(buffer, "cmd.edit(\"%s\",\"%s\")", buf1, buf2);
^~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~
layer1/Scene.cpp:3898:22: note: 'sprintf' output between 16 and 2062 bytes into a destination of size 1024
sprintf(buffer, "cmd.edit(\"%s\",\"%s\")", buf1, buf2);
~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer1/Scene.cpp:3758:24: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 242 [-Wformat-truncation=]
PRINTF " You clicked %s -> (%s)\n", buffer, cEditorSele1 ENDF(G);
^~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~
In file included from layer1/Ortho.h:34,
from layer1/Scene.h:23,
from layer1/Scene.cpp:34:
layer0/Feedback.h:265:53: note: 'snprintf' output between 24 and 1047 bytes into a destination of size 255
#define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
^
layer1/Scene.cpp:3758:17: note: in expansion of macro 'PRINTF'
PRINTF " You clicked %s -> (%s)\n", buffer, cEditorSele1 ENDF(G);
^~~~~~
layer1/Scene.cpp:3764:31: warning: '%s' directive writing up to 1023 bytes into a region of size 1014 [-Wformat-overflow=]
sprintf(buf2, "cmd.edit(\"%s\",pkresi=1)", buffer);
^~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~
layer1/Scene.cpp:3764:24: note: 'sprintf' output between 22 and 1045 bytes into a destination of size 1024
sprintf(buf2, "cmd.edit(\"%s\",pkresi=1)", buffer);
~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer1/Scene.cpp:3793:24: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=]
PRINTF " You unpicked %s.", buffer ENDF(G);
^~~~~~~~~~~~~~~~~~~ ~~~~~~
In file included from layer1/Ortho.h:34,
from layer1/Scene.h:23,
from layer1/Scene.cpp:34:
layer0/Feedback.h:265:53: note: 'snprintf' output between 16 and 1039 bytes into a destination of size 255
#define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
^
layer1/Scene.cpp:3793:17: note: in expansion of macro 'PRINTF'
PRINTF " You unpicked %s.", buffer ENDF(G);
^~~~~~
layer1/Scene.cpp:3806:50: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 242 [-Wformat-truncation=]
PRINTFB(G, FB_Scene, FB_Results) " You clicked %s -> (%s)\n", buffer,
^~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~
In file included from layer1/Ortho.h:34,
from layer1/Scene.h:23,
from layer1/Scene.cpp:34:
layer0/Feedback.h:262:98: note: 'snprintf' output between 21 and 1299 bytes into a destination of size 255
#define PRINTFB(G,sysmod,mask) { FeedbackLineType _FBstr; if(Feedback(G,sysmod,mask)) {(snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
^
layer1/Scene.cpp:3806:17: note: in expansion of macro 'PRINTFB'
PRINTFB(G, FB_Scene, FB_Results) " You clicked %s -> (%s)\n", buffer,
^~~~~~~
layer1/Scene.cpp:4064:20: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 242 [-Wformat-truncation=]
PRINTF " You clicked %s", buffer ENDF(G);
^~~~~~~~~~~~~~~~~ ~~~~~~
In file included from layer1/Ortho.h:34,
from layer1/Scene.h:23,
from layer1/Scene.cpp:34:
layer0/Feedback.h:265:53: note: 'snprintf' output between 14 and 1037 bytes into a destination of size 255
#define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
^
layer1/Scene.cpp:4064:13: note: in expansion of macro 'PRINTF'
PRINTF " You clicked %s", buffer ENDF(G);
^~~~~~
layer1/Scene.cpp:4098:31: warning: '%s' directive writing up to 1023 bytes into a region of size 1004 [-Wformat-overflow=]
sprintf(buffer, "cmd.drag(\"byobject (%s)\")", buf1);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~
layer1/Scene.cpp:4098:22: note: 'sprintf' output between 24 and 1047 bytes into a destination of size 1024
sprintf(buffer, "cmd.drag(\"byobject (%s)\")", buf1);
~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer1/Scene.cpp:4089:31: warning: '%s' directive writing up to 1023 bytes into a region of size 1007 [-Wformat-overflow=]
sprintf(buffer, "cmd.drag(\"bymol (%s)\")", buf1);
^~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~
layer1/Scene.cpp:4089:22: note: 'sprintf' output between 21 and 1044 bytes into a destination of size 1024
sprintf(buffer, "cmd.drag(\"bymol (%s)\")", buf1);
~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer1/Scene.cpp:4149:31: warning: '%s' directive writing up to 1023 bytes into a region of size 1012 [-Wformat-overflow=]
sprintf(buffer, "cmd.center(\"%s\",state=%d)", buf1, I->LastPicked.context.state + 1);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~
layer1/Scene.cpp:4149:31: note: directive argument in the range [-2147483647, 2147483647]
layer1/Scene.cpp:4149:22: note: 'sprintf' output between 23 and 1056 bytes into a destination of size 1024
sprintf(buffer, "cmd.center(\"%s\",state=%d)", buf1, I->LastPicked.context.state + 1);
~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer1/Scene.cpp:4120:33: warning: '%s' directive writing up to 1023 bytes into a region of size 1012 [-Wformat-overflow=]
sprintf(buffer, "cmd.origin(\"%s\")", buf1);
^~~~~~~~~~~~~~~~~~~~ ~~~~
layer1/Scene.cpp:4120:24: note: 'sprintf' output between 15 and 1038 bytes into a destination of size 1024
sprintf(buffer, "cmd.origin(\"%s\")", buf1);
~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer1/Scene.cpp:4127:24: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 242 [-Wformat-truncation=]
PRINTF " You clicked %s", buffer ENDF(G);
^~~~~~~~~~~~~~~~~ ~~~~~~
In file included from layer1/Ortho.h:34,
from layer1/Scene.h:23,
from layer1/Scene.cpp:34:
layer0/Feedback.h:265:53: note: 'snprintf' output between 14 and 1037 bytes into a destination of size 255
#define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
^
layer1/Scene.cpp:4127:17: note: in expansion of macro 'PRINTF'
PRINTF " You clicked %s", buffer ENDF(G);
^~~~~~
layer1/Scene.cpp:4214:29: warning: ')' directive writing 1 byte into a region of size between 0 and 1023 [-Wformat-overflow=]
sprintf(buf2, "%s(%s)", sel_mode_kw, buffer);
^~~~~~~~
layer1/Scene.cpp:4214:22: note: 'sprintf' output 3 or more bytes (assuming 1026) into a destination of size 1024
sprintf(buf2, "%s(%s)", sel_mode_kw, buffer);
~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer1/Scene.cpp:4221:35: warning: '%s' directive writing up to 1023 bytes into a region of size between 753 and 1008 [-Wformat-overflow=]
sprintf(buffer, "cmd.select('%s',\"%s(%s)\")", selName, sel_mode_kw,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
buf1);
~~~~
layer1/Scene.cpp:4221:26: note: 'sprintf' output 20 or more bytes (assuming 1298) into a destination of size 1024
sprintf(buffer, "cmd.select('%s',\"%s(%s)\")", selName, sel_mode_kw,
~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
buf1);
~~~~~
layer1/Scene.cpp:4196:29: warning: '%s' directive writing up to 1023 bytes into a region of size between 760 and 1015 [-Wformat-overflow=]
sprintf(buf2, "(((%s) or %s(%s)) and not ((%s(%s)) and %s(%s)))",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
selName, sel_mode_kw, buffer, sel_mode_kw, buffer, sel_mode_kw,
~~~~~~
layer1/Scene.cpp:4196:22: note: 'sprintf' output 35 or more bytes (assuming 2591) into a destination of size 1024
sprintf(buf2, "(((%s) or %s(%s)) and not ((%s(%s)) and %s(%s)))",
~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
selName, sel_mode_kw, buffer, sel_mode_kw, buffer, sel_mode_kw,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
selName);
~~~~~~~~
layer1/Scene.cpp:4205:33: warning: '%s' directive writing up to 1023 bytes into a region of size between 760 and 1015 [-Wformat-overflow=]
sprintf(buf2, "(((%s) or %s(%s)) and not ((%s(%s)) and %s(%s)))",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
selName, sel_mode_kw, buffer, sel_mode_kw, buffer, sel_mode_kw,
~~~~~~
layer1/Scene.cpp:4205:26: note: 'sprintf' output 35 or more bytes (assuming 2591) into a destination of size 1024
sprintf(buf2, "(((%s) or %s(%s)) and not ((%s(%s)) and %s(%s)))",
~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
selName, sel_mode_kw, buffer, sel_mode_kw, buffer, sel_mode_kw,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
selName);
~~~~~~~~
layer1/Scene.cpp:4208:35: warning: '%s' directive writing up to 1023 bytes into a region of size between 753 and 1008 [-Wformat-overflow=]
sprintf(buffer, "cmd.select('%s',\"%s(%s)\",enable=1)", selName,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sel_mode_kw, buf2);
~~~~
layer1/Scene.cpp:4208:26: note: 'sprintf' output 29 or more bytes (assuming 1307) into a destination of size 1024
sprintf(buffer, "cmd.select('%s',\"%s(%s)\",enable=1)", selName,
~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sel_mode_kw, buf2);
~~~~~~~~~~~~~~~~~~
layer1/Scene.cpp:4173:27: warning: '%s' directive writing up to 1023 bytes into a region of size 1022 [-Wformat-overflow=]
sprintf(buf2, "(%s(%s))", sel_mode_kw, buffer);
^~~~~~~~~~ ~~~~~~
layer1/Scene.cpp:4173:20: note: 'sprintf' output 5 or more bytes (assuming 1028) into a destination of size 1024
sprintf(buf2, "(%s(%s))", sel_mode_kw, buffer);
~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer1/Scene.cpp:4184:33: warning: '%s' directive writing up to 1023 bytes into a region of size between 753 and 1008 [-Wformat-overflow=]
sprintf(buffer, "cmd.select('%s',\"%s(%s)\",enable=1)", selName,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sel_mode_kw, buf1);
~~~~
layer1/Scene.cpp:4184:24: note: 'sprintf' output 29 or more bytes (assuming 1307) into a destination of size 1024
sprintf(buffer, "cmd.select('%s',\"%s(%s)\",enable=1)", selName,
~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sel_mode_kw, buf1);
~~~~~~~~~~~~~~~~~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/ScenePicking.cpp -o build/temp.linux-i686-2.7/layer1/ScenePicking.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/SceneRay.cpp -o build/temp.linux-i686-2.7/layer1/SceneRay.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/SceneRender.cpp -o build/temp.linux-i686-2.7/layer1/SceneRender.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
layer1/SceneRender.cpp:542:6: warning: 'void AppendCopyWithChangedShader(PyMOLGlobals*, CGO*, CGO*, int, int)' defined but not used [-Wunused-function]
void AppendCopyWithChangedShader(PyMOLGlobals * G, CGO *destCGO, CGO *srcCGO, int frommode, int tomode){
^~~~~~~~~~~~~~~~~~~~~~~~~~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/ScrollBar.cpp -o build/temp.linux-i686-2.7/layer1/ScrollBar.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Seq.cpp -o build/temp.linux-i686-2.7/layer1/Seq.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
layer1/Seq.cpp: In function 'int SeqFindRowCol(PyMOLGlobals*, int, int, int*, int*, int)':
layer1/Seq.cpp:90:41: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
if((char_num >= 0) && (char_num < row->ext_len) && (row->char2col)) {
~~~~~~~~~^~~~~~~~~~~~~~
layer1/Seq.cpp: In member function 'virtual void CSeq::reshape(int, int)':
layer1/Seq.cpp:144:28: warning: comparison of integer expressions of different signedness: 'ov_size' {aka 'unsigned int'} and 'int' [-Wsign-compare]
if(I->Row[a].ext_len > I->Size)
~~~~~~~~~~~~~~~~~~^~~~~~~~~
layer1/Seq.cpp: In member function 'virtual void CSeq::draw(CGO*)':
layer1/Seq.cpp:427:20: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
if(max_len < row->ext_len)
~~~~~~~~^~~~~~~~~~~~~~
In file included from layer1/Seq.cpp:25:
layer1/Seq.cpp: In function 'void SeqFree(PyMOLGlobals*)':
layer1/Seq.cpp:783:14: warning: deleting object of polymorphic class type 'CSeq' which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
DeleteP(G->Seq);
^~~
layer0/MemoryDebug.h:54:39: note: in definition of macro 'DeleteP'
#define DeleteP(ptr) {if(ptr) {delete ptr;ptr=NULL;}}
^~~
layer1/Seq.cpp:780:9: warning: unused variable 'I' [-Wunused-variable]
CSeq *I = G->Seq;
^
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Setting.cpp -o build/temp.linux-i686-2.7/layer1/Setting.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
layer1/Setting.cpp: In function 'void SettingGenerateSideEffects(PyMOLGlobals*, int, const char*, int, int)':
layer1/Setting.cpp:2029:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
if (SettingGetGlobal_b(G, cSetting_precomputed_lighting))
^~
layer1/Setting.cpp:2031:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
SceneInvalidate(G);
^~~~~~~~~~~~~~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Shaker.cpp -o build/temp.linux-i686-2.7/layer1/Shaker.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Symmetry.cpp -o build/temp.linux-i686-2.7/layer1/Symmetry.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Text.cpp -o build/temp.linux-i686-2.7/layer1/Text.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/TypeFace.cpp -o build/temp.linux-i686-2.7/layer1/TypeFace.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/View.cpp -o build/temp.linux-i686-2.7/layer1/View.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Wizard.cpp -o build/temp.linux-i686-2.7/layer1/Wizard.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
layer1/Wizard.cpp: In member function 'virtual void CWizard::draw(CGO*)':
layer1/Wizard.cpp:880:5: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
else
^~~~
layer1/Wizard.cpp:882:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
drawTopEdge();
^~~~~~~~~~~
In file included from layer1/Wizard.cpp:25:
layer1/Wizard.cpp: In function 'void WizardFree(PyMOLGlobals*)':
layer1/Wizard.cpp:1034:14: warning: deleting object of polymorphic class type 'CWizard' which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
DeleteP(G->Wizard);
^~~~~~
layer0/MemoryDebug.h:54:39: note: in definition of macro 'DeleteP'
#define DeleteP(ptr) {if(ptr) {delete ptr;ptr=NULL;}}
^~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/AssemblyHelpers.cpp -o build/temp.linux-i686-2.7/layer2/AssemblyHelpers.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/AtomInfo.cpp -o build/temp.linux-i686-2.7/layer2/AtomInfo.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
layer2/AtomInfo.cpp: In function 'bool AtomResiFromResv(char*, size_t, int, char)':
layer2/AtomInfo.cpp:819:56: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
return snprintf(resi, size, "%d%c", resv, inscode) < size;
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
layer2/AtomInfo.cpp:820:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
return snprintf(resi, size, "%d", resv) < size;
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/AtomInfoHistory.cpp -o build/temp.linux-i686-2.7/layer2/AtomInfoHistory.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/BondTypeHistory.cpp -o build/temp.linux-i686-2.7/layer2/BondTypeHistory.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/CifFile.cpp -o build/temp.linux-i686-2.7/layer2/CifFile.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/CifMoleculeReader.cpp -o build/temp.linux-i686-2.7/layer2/CifMoleculeReader.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
layer2/CifMoleculeReader.cpp: In member function 'void seqvec_t::set(int, const char*)':
layer2/CifMoleculeReader.cpp:91:11: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
if (i > size())
~~^~~~~~~~
layer2/CifMoleculeReader.cpp: In member function 'const char* seqvec_t::get(int) const':
layer2/CifMoleculeReader.cpp:97:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
if (i < 1 || i > size())
~~^~~~~~~~
layer2/CifMoleculeReader.cpp: In function 'CoordSet** read_pdbx_struct_assembly(PyMOLGlobals*, const cif_data*, const AtomInfoType*, const CoordSet*, const char*)':
layer2/CifMoleculeReader.cpp:728:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
while (j < c_src_len * c_it->size()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~
layer2/CifMoleculeReader.cpp: In function 'bool read_struct_conn_(PyMOLGlobals*, cif_data*, AtomInfoType*, CoordSet*, CifContentInfo&)':
layer2/CifMoleculeReader.cpp:1770:8: warning: unused variable 'metalc_as_zero' [-Wunused-variable]
bool metalc_as_zero = SettingGetGlobal_b(G, cSetting_cif_metalc_as_zero_order_bonds);
^~~~~~~~~~~~~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/CoordSet.cpp -o build/temp.linux-i686-2.7/layer2/CoordSet.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
layer2/CoordSet.cpp: In member function 'void CoordSet::update(int)':
layer2/CoordSet.cpp:1227:39: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 223 [-Wformat-truncation=]
PRINTFB(G, FB_CoordSet, FB_Blather) " CoordSetUpdate-Entered: object %s state %d cset %p\n",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/DistSet.cpp -o build/temp.linux-i686-2.7/layer2/DistSet.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/GadgetSet.cpp -o build/temp.linux-i686-2.7/layer2/GadgetSet.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/HydrogenAdder.cpp -o build/temp.linux-i686-2.7/layer2/HydrogenAdder.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
layer2/HydrogenAdder.cpp: In function 'int ObjectMoleculeAddSeleHydrogensRefactored(ObjectMolecule*, int, int)':
layer2/HydrogenAdder.cpp:272:30: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const int' [-Wsign-compare]
for (unsigned atm = 0; atm < n_atom_old; atm++) {
~~~~^~~~~~~~~~~~
layer2/HydrogenAdder.cpp:292:30: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const int' [-Wsign-compare]
for (unsigned atm = 0; atm < n_atom_old; ++atm) {
~~~~^~~~~~~~~~~~
layer2/HydrogenAdder.cpp:346:32: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
for (unsigned idx = 0; idx < cs->NIndex; ++idx) {
~~~~^~~~~~~~~~~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/MmodTyping.cpp -o build/temp.linux-i686-2.7/layer2/MmodTyping.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/MmtfMoleculeReader.cpp -o build/temp.linux-i686-2.7/layer2/MmtfMoleculeReader.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
layer2/MmtfMoleculeReader.cpp: In function 'ObjectMolecule* ObjectMoleculeReadMmtfStr(PyMOLGlobals*, ObjectMolecule*, const char*, int, int, int, int, int, int)':
layer2/MmtfMoleculeReader.cpp:230:47: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
for (int l = 0, offset = atomIndex; l < group->bondAtomListCount / 2; ++l) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer2/MmtfMoleculeReader.cpp:296:21: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
for (int l = 0; l < container->bondAtomListCount / 2; ++l) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/Mol2Typing.cpp -o build/temp.linux-i686-2.7/layer2/Mol2Typing.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/MolV3000.cpp -o build/temp.linux-i686-2.7/layer2/MolV3000.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectAlignment.cpp -o build/temp.linux-i686-2.7/layer2/ObjectAlignment.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
In file included from layer0/Map.h:24,
from layer1/Basis.h:20,
from layer1/Ray.h:23,
from layer1/PyMOLObject.h:24,
from layer2/ObjectAlignment.h:22,
from layer2/ObjectAlignment.cpp:27:
layer0/Vector.h: In function 'void ObjectAlignmentUpdate(ObjectAlignment*)':
layer0/Vector.h:357:3: warning: '*((void*)& gvert +8)' may be used uninitialized in this function [-Wmaybe-uninitialized]
dst[2] = src[2];
^~~
layer2/ObjectAlignment.cpp:950:39: note: '*((void*)& gvert +8)' was declared here
float mean[3], vert[3], gvert[3];
^~~~~
In file included from layer0/Map.h:24,
from layer1/Basis.h:20,
from layer1/Ray.h:23,
from layer1/PyMOLObject.h:24,
from layer2/ObjectAlignment.h:22,
from layer2/ObjectAlignment.cpp:27:
layer0/Vector.h:356:3: warning: '*((void*)& gvert +4)' may be used uninitialized in this function [-Wmaybe-uninitialized]
dst[1] = src[1];
^~~
layer2/ObjectAlignment.cpp:950:39: note: '*((void*)& gvert +4)' was declared here
float mean[3], vert[3], gvert[3];
^~~~~
In file included from layer0/Map.h:24,
from layer1/Basis.h:20,
from layer1/Ray.h:23,
from layer1/PyMOLObject.h:24,
from layer2/ObjectAlignment.h:22,
from layer2/ObjectAlignment.cpp:27:
layer0/Vector.h:355:3: warning: 'gvert' may be used uninitialized in this function [-Wmaybe-uninitialized]
dst[0] = src[0];
^~~
layer2/ObjectAlignment.cpp:950:39: note: 'gvert' was declared here
float mean[3], vert[3], gvert[3];
^~~~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectCGO.cpp -o build/temp.linux-i686-2.7/layer2/ObjectCGO.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
layer2/ObjectCGO.cpp: In function 'void ObjectCGORender(ObjectCGO*, RenderInfo*)':
layer2/ObjectCGO.cpp:520:9: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
if (!ray)
^~
layer2/ObjectCGO.cpp:522:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
ObjectCGORenderState(G, pass, ray, I, info, sobj, color, ramp, use_shader, cgo_lighting);
^~~~~~~~~~~~~~~~~~~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectCallback.cpp -o build/temp.linux-i686-2.7/layer2/ObjectCallback.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectDist.cpp -o build/temp.linux-i686-2.7/layer2/ObjectDist.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectGadget.cpp -o build/temp.linux-i686-2.7/layer2/ObjectGadget.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectGadgetRamp.cpp -o build/temp.linux-i686-2.7/layer2/ObjectGadgetRamp.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectGroup.cpp -o build/temp.linux-i686-2.7/layer2/ObjectGroup.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectMap.cpp -o build/temp.linux-i686-2.7/layer2/ObjectMap.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
layer2/ObjectMap.cpp: In function 'int ObjectMapCCP4StrToMap(ObjectMap*, char*, int, int, int)':
layer2/ObjectMap.cpp:2410:12: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
if(bytes < 256 * sizeof(int)) {
~~~~~~^~~~~~~~~~~~~~~~~~~
In file included from /usr/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:27,
from /usr/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from layer0/os_numpy.h:8,
from layer2/ObjectMap.cpp:22:
/usr/lib/python2.7/site-packages/numpy/core/include/numpy/__multiarray_api.h: At global scope:
/usr/lib/python2.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: 'int _import_array()' defined but not used [-Wunused-function]
_import_array(void)
^~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function 'int ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int)':
layer2/ObjectMap.cpp:4324:5: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 243 [-Wformat-truncation=]
" ObjectMap: %s\n", cc ENDFB(I->Obj.G);
^~~~~~~~~~~~~~~~~~ ~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer2/ObjectMap.cpp:21:
/usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 14 and 1037 bytes into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp:4324:5: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 243 [-Wformat-truncation=]
" ObjectMap: %s\n", cc ENDFB(I->Obj.G);
^~~~~~~~~~~~~~~~~~ ~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer2/ObjectMap.cpp:21:
/usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 14 and 1037 bytes into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function 'ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)':
layer2/ObjectMap.cpp:2996:7: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=]
" PHIStrToMap: %s\n", cc ENDFB(I->Obj.G);
^~~~~~~~~~~~~~~~~~~~ ~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer2/ObjectMap.cpp:21:
/usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 16 and 1039 bytes into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp:3005:7: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=]
" PHIStrToMap: %s\n", cc ENDFB(I->Obj.G);
^~~~~~~~~~~~~~~~~~~~ ~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer2/ObjectMap.cpp:21:
/usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 16 and 1039 bytes into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp:3011:7: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=]
" PHIStrToMap: %s\n", cc ENDFB(I->Obj.G);
^~~~~~~~~~~~~~~~~~~~ ~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer2/ObjectMap.cpp:21:
/usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 16 and 1039 bytes into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp:3093:7: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=]
" PHIStrToMap: %s\n", cc ENDFB(I->Obj.G);
^~~~~~~~~~~~~~~~~~~~ ~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer2/ObjectMap.cpp:21:
/usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 16 and 1039 bytes into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectMesh.cpp -o build/temp.linux-i686-2.7/layer2/ObjectMesh.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
layer2/ObjectMesh.cpp: In function 'void ObjectMeshUpdate(ObjectMesh*)':
layer2/ObjectMesh.cpp:548:11: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 226 [-Wformat-truncation=]
"ObjectMeshUpdate-Error: map '%s' has been deleted.\n", ms->MapName
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer2/ObjectMesh.cpp:17:
/usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 50 and 305 bytes into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer2/ObjectMesh.cpp:582:15: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 232 [-Wformat-truncation=]
" ObjectMesh: updating \"%s\".\n", I->Obj.Name ENDFB(G);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer2/ObjectMesh.cpp:17:
/usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 27 and 282 bytes into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer2/ObjectMesh.cpp: In function 'void ObjectMeshDump(ObjectMesh*, const char*, int)':
layer2/ObjectMesh.cpp:368:7: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 238 [-Wformat-truncation=]
" ObjectMeshDump: %s written to %s\n", I->Obj.Name, fname ENDFB(I->Obj.G);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer2/ObjectMesh.cpp:17:
/usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output 31 or more bytes (assuming 286) into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectMolecule.cpp -o build/temp.linux-i686-2.7/layer2/ObjectMolecule.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
layer2/ObjectMolecule.cpp: In function 'ObjectMolecule* ObjectMoleculeReadStr(PyMOLGlobals*, ObjectMolecule*, const char**, cLoadType_t, int, int, int, int, char*, short int, OVLexicon*)':
layer2/ObjectMolecule.cpp:8837:12: warning: enumeration value 'cLoadTypeUnknown' not handled in switch [-Wswitch]
switch (content_format) {
^
layer2/ObjectMolecule.cpp:8837:12: warning: enumeration value 'cLoadTypePDB' not handled in switch [-Wswitch]
layer2/ObjectMolecule.cpp:8837:12: warning: enumeration value 'cLoadTypeSDF1' not handled in switch [-Wswitch]
layer2/ObjectMolecule.cpp:8837:12: warning: enumeration value 'cLoadTypeMMDSeparate' not handled in switch [-Wswitch]
layer2/ObjectMolecule.cpp:8837:12: warning: enumeration value 'cLoadTypeXPLORMap' not handled in switch [-Wswitch]
layer2/ObjectMolecule.cpp:8837:12: warning: enumeration value 'cLoadTypeChemPyModel' not handled in switch [-Wswitch]
layer2/ObjectMolecule.cpp:8837:12: warning: enumeration value 'cLoadTypePDBStr' not handled in switch [-Wswitch]
layer2/ObjectMolecule.cpp:8837:12: warning: enumeration value 'cLoadTypeChemPyBrick' not handled in switch [-Wswitch]
layer2/ObjectMolecule.cpp:8837:12: warning: enumeration value 'cLoadTypeChemPyMap' not handled in switch [-Wswitch]
layer2/ObjectMolecule.cpp:8837:12: warning: enumeration value 'cLoadTypeCallback' not handled in switch [-Wswitch]
layer2/ObjectMolecule.cpp:8837:12: warning: enumeration value 'cLoadTypeCGO' not handled in switch [-Wswitch]
layer2/ObjectMolecule.cpp:8837:12: warning: enumeration value 'cLoadTypeR3D' not handled in switch [-Wswitch]
layer2/ObjectMolecule.cpp:8837:12: warning: enumeration value 'cLoadTypeCCP4Map' not handled in switch [-Wswitch]
layer2/ObjectMolecule.cpp:8837:12: warning: enumeration value 'cLoadTypePMO' not handled in switch [-Wswitch]
layer2/ObjectMolecule.cpp:8837:12: warning: enumeration value 'cLoadTypeTOP' not handled in switch [-Wswitch]
layer2/ObjectMolecule.cpp:8837:12: warning: enumeration value 'cLoadTypeTRJ' not handled in switch [-Wswitch]
layer2/ObjectMolecule.cpp:8837:12: warning: enumeration value 'cLoadTypeCRD' not handled in switch [-Wswitch]
layer2/ObjectMolecule.cpp:8837:12: warning: enumeration value 'cLoadTypeRST' not handled in switch [-Wswitch]
layer2/ObjectMolecule.cpp:8837:12: warning: enumeration value 'cLoadTypePSE' not handled in switch [-Wswitch]
layer2/ObjectMolecule.cpp:8837:12: warning: enumeration value 'cLoadTypeXPLORStr' not handled in switch [-Wswitch]
layer2/ObjectMolecule.cpp:8837:12: warning: enumeration value 'cLoadTypePHIMap' not handled in switch [-Wswitch]
layer2/ObjectMolecule.cpp:8837:12: warning: enumeration value 'cLoadTypeFLDMap' not handled in switch [-Wswitch]
layer2/ObjectMolecule.cpp:8837:12: warning: enumeration value 'cLoadTypeBRIXMap' not handled in switch [-Wswitch]
layer2/ObjectMolecule.cpp:8837:12: warning: enumeration value 'cLoadTypeGRDMap' not handled in switch [-Wswitch]
layer2/ObjectMolecule.cpp:8837:12: warning: enumeration value 'cLoadTypePQR' not handled in switch [-Wswitch]
layer2/ObjectMolecule.cpp:8837:12: warning: enumeration value 'cLoadTypeDXMap' not handled in switch [-Wswitch]
layer2/ObjectMolecule.cpp:8837:12: warning: enumeration value 'cLoadTypeP1M' not handled in switch [-Wswitch]
layer2/ObjectMolecule.cpp:8837:12: warning: enumeration value 'cLoadTypeCCP4Str' not handled in switch [-Wswitch]
layer2/ObjectMolecule.cpp:8837:12: warning: enumeration value 'cLoadTypeXTC' not handled in switch [-Wswitch]
layer2/ObjectMolecule.cpp:8837:12: warning: enumeration value 'cLoadTypeTRR' not handled in switch [-Wswitch]
layer2/ObjectMolecule.cpp:8837:12: warning: enumeration value 'cLoadTypeGRO' not handled in switch [-Wswitch]
layer2/ObjectMolecule.cpp:8837:12: warning: enumeration value 'cLoadTypeTRJ2' not handled in switch [-Wswitch]
layer2/ObjectMolecule.cpp:8837:12: warning: enumeration value 'cLoadTypeG96' not handled in switch [-Wswitch]
layer2/ObjectMolecule.cpp:8837:12: warning: enumeration value 'cLoadTypeDCD' not handled in switch [-Wswitch]
layer2/ObjectMolecule.cpp:8837:12: warning: enumeration value 'cLoadTypeCUBEMap' not handled in switch [-Wswitch]
layer2/ObjectMolecule.cpp:8837:12: warning: enumeration value 'cLoadTypePHIStr' not handled in switch [-Wswitch]
layer2/ObjectMolecule.cpp:8837:12: warning: enumeration value 'cLoadTypeACNTMap' not handled in switch [-Wswitch]
layer2/ObjectMolecule.cpp:8837:12: warning: enumeration value 'cLoadTypeDTR' not handled in switch [-Wswitch]
layer2/ObjectMolecule.cpp:8837:12: warning: enumeration value 'cLoadTypeCIF' not handled in switch [-Wswitch]
layer2/ObjectMolecule.cpp:8837:12: warning: enumeration value 'cLoadTypeCIFStr' not handled in switch [-Wswitch]
layer2/ObjectMolecule.cpp:8837:12: warning: enumeration value 'cLoadTypeSpider' not handled in switch [-Wswitch]
layer2/ObjectMolecule.cpp:8837:12: warning: enumeration value 'cLoadTypeCMS' not handled in switch [-Wswitch]
layer2/ObjectMolecule.cpp:8837:12: warning: enumeration value 'cLoadTypePlugin' not handled in switch [-Wswitch]
layer2/ObjectMolecule.cpp:8837:12: warning: enumeration value 'cLoadTypeMAE' not handled in switch [-Wswitch]
layer2/ObjectMolecule.cpp:8837:12: warning: enumeration value 'cLoadTypeMAEStr' not handled in switch [-Wswitch]
layer2/ObjectMolecule.cpp:8837:12: warning: enumeration value 'cLoadTypePDBQT' not handled in switch [-Wswitch]
layer2/ObjectMolecule.cpp:8837:12: warning: enumeration value 'cLoadTypeVDBStr' not handled in switch [-Wswitch]
layer2/ObjectMolecule.cpp:8837:12: warning: enumeration value 'cLoadTypeMMTF' not handled in switch [-Wswitch]
layer2/ObjectMolecule.cpp:8837:12: warning: enumeration value 'cLoadTypeMMTFStr' not handled in switch [-Wswitch]
layer2/ObjectMolecule.cpp: In function 'void ObjectMoleculeSeleOp(ObjectMolecule*, int, ObjectMoleculeOpRec*)':
layer2/ObjectMolecule.cpp:9297:9: warning: unused variable 'r' [-Wunused-variable]
float r, rms;
^
layer2/ObjectMolecule.cpp: In function 'const char* findflag(PyMOLGlobals*, const char*, const char*, const char*)':
layer2/ObjectMolecule.cpp:1507:9: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 194 [-Wformat-truncation=]
" ObjectMolecule-Error: Unrecognized file format (can't find \"%s\").\n", pat
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer2/ObjectMolecule.cpp:16:
/usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 66 and 1089 bytes into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer2/ObjectMolecule.cpp:1525:9: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 194 [-Wformat-truncation=]
" ObjectMolecule-Error: Unrecognized file format (can't find \"%s\").\n", pat
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer2/ObjectMolecule.cpp:16:
/usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 66 and 1089 bytes into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer2/ObjectMolecule.cpp: In function 'CoordSet* ObjectMoleculeMOLStr2CoordSet(PyMOLGlobals*, const char*, AtomInfoType**, const char**)':
layer2/ObjectMolecule.cpp:7862:5: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 224 [-Wformat-truncation=]
" ObjMolMOLStr2CoordSet: title '%s'\n", nameTmp ENDFB(G)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer2/ObjectMolecule.cpp:16:
/usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 34 and 289 bytes into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer2/ObjectMolecule.cpp: In function 'void ObjectMoleculeUpdate(ObjectMolecule*)':
layer2/ObjectMolecule.cpp:11068:15: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 181 and 191 [-Wformat-truncation=]
" ObjectMolecule-DEBUG: updating representations for state %d of \"%s\".\n",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer2/ObjectMolecule.cpp:16:
/usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 68 and 333 bytes into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer2/ObjectMolecule.cpp: In function 'int ObjectMoleculeMoveAtom(ObjectMolecule*, int, int, float*, int, int)':
layer2/ObjectMolecule.cpp:11191:21: warning: '%s' directive writing up to 1023 bytes into a region of size 1004 [-Wformat-overflow=]
sprintf(line, "cmd.translate_atom(\"%s\",%15.9f,%15.9f,%15.9f,%d,%d,%d)\n",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
buffer, v[0], v[1], v[2], state + 1, mode, 0);
~~~~~~
layer2/ObjectMolecule.cpp:11191:21: note: directive argument in the range [-2147483647, 2147483647]
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer2/ObjectMolecule.cpp:16:
/usr/include/bits/stdio2.h:33:34: note: '__builtin___sprintf_chk' output between 78 and 2036 bytes into a destination of size 1024
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectMolecule2.cpp -o build/temp.linux-i686-2.7/layer2/ObjectMolecule2.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
layer2/ObjectMolecule2.cpp: In function 'int ObjectMoleculeAddPseudoatom(ObjectMolecule*, int, const char*, const char*, const char*, const char*, const char*, const char*, float, int, float, float, const char*, float*, int, int, int, int)':
layer2/ObjectMolecule2.cpp:304:9: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 238 [-Wformat-truncation=]
" ObjMol: created %s/%s/%s/%s`%d%c/%s\n",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer2/ObjectMolecule2.cpp:20:
/usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output 26 or more bytes (assuming 281) into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectSlice.cpp -o build/temp.linux-i686-2.7/layer2/ObjectSlice.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
layer2/ObjectSlice.cpp: In function 'void ObjectSliceUpdate(ObjectSlice*)':
layer2/ObjectSlice.cpp:679:11: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 225 [-Wformat-truncation=]
"ObjectSliceUpdate-Error: map '%s' has been deleted.\n", oss->MapName
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer2/ObjectSlice.cpp:17:
/usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 51 and 306 bytes into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer2/ObjectSlice.cpp:690:13: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 231 [-Wformat-truncation=]
" ObjectSlice: updating \"%s\".\n", I->Obj.Name ENDFB(I->Obj.G);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer2/ObjectSlice.cpp:17:
/usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 28 and 283 bytes into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectSurface.cpp -o build/temp.linux-i686-2.7/layer2/ObjectSurface.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
layer2/ObjectSurface.cpp: In function 'void ObjectSurfaceUpdate(ObjectSurface*)':
layer2/ObjectSurface.cpp:527:15: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 229 [-Wformat-truncation=]
" ObjectSurface: updating \"%s\".\n", I->Obj.Name ENDFB(I->Obj.G);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer2/ObjectSurface.cpp:17:
/usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 30 and 285 bytes into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer2/ObjectSurface.cpp:496:11: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 223 [-Wformat-truncation=]
"ObjectSurfaceUpdate-Error: map '%s' has been deleted.\n", ms->MapName
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer2/ObjectSurface.cpp:17:
/usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 53 and 308 bytes into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer2/ObjectSurface.cpp: In function 'void ObjectSurfaceDump(ObjectSurface*, const char*, int)':
layer2/ObjectSurface.cpp:292:7: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 235 [-Wformat-truncation=]
" ObjectSurfaceDump: %s written to %s\n", I->Obj.Name, fname ENDFB(I->Obj.G);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer2/ObjectSurface.cpp:17:
/usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output 34 or more bytes (assuming 289) into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectVolume.cpp -o build/temp.linux-i686-2.7/layer2/ObjectVolume.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
layer2/ObjectVolume.cpp: In function 'void ObjectVolumeRender(ObjectVolume*, RenderInfo*)':
layer2/ObjectVolume.cpp:754:9: warning: unused variable 'volume_mode' [-Wunused-variable]
short volume_mode = SettingGetGlobal_i(G, cSetting_volume_mode);
^~~~~~~~~~~
layer2/ObjectVolume.cpp:755:9: warning: unused variable 'ortho' [-Wunused-variable]
short ortho = SettingGetGlobal_i(G, cSetting_ortho);
^~~~~
layer2/ObjectVolume.cpp: At global scope:
layer2/ObjectVolume.cpp:687:15: warning: 'size_t createPreintegrationTexture(PyMOLGlobals*, const float*, int)' defined but not used [-Wunused-function]
static size_t createPreintegrationTexture(PyMOLGlobals * G, const float *Table, const int count)
^~~~~~~~~~~~~~~~~~~~~~~~~~~
layer2/ObjectVolume.cpp: In function 'void ObjectVolumeUpdate(ObjectVolume*)':
layer2/ObjectVolume.cpp:75:7: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=]
"ObjectVolume-Error: map '%s' has been deleted.\n", vs->MapName
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer2/ObjectVolume.cpp:20:
/usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 46 and 301 bytes into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer2/ObjectVolume.cpp: In function 'ObjectMapState* ObjectVolumeGetMapState(ObjectVolume*)':
layer2/ObjectVolume.cpp:75:7: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=]
"ObjectVolume-Error: map '%s' has been deleted.\n", vs->MapName
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer2/ObjectVolume.cpp:20:
/usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 46 and 301 bytes into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer2/ObjectVolume.cpp: In function 'CField* ObjectVolumeGetField(ObjectVolume*)':
layer2/ObjectVolume.cpp:75:7: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=]
"ObjectVolume-Error: map '%s' has been deleted.\n", vs->MapName
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer2/ObjectVolume.cpp:20:
/usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 46 and 301 bytes into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer2/ObjectVolume.cpp: In function 'void ObjectVolumeRender(ObjectVolume*, RenderInfo*)':
layer2/ObjectVolume.cpp:75:7: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=]
"ObjectVolume-Error: map '%s' has been deleted.\n", vs->MapName
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer2/ObjectVolume.cpp:20:
/usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 46 and 301 bytes into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepAngle.cpp -o build/temp.linux-i686-2.7/layer2/RepAngle.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepCartoon.cpp -o build/temp.linux-i686-2.7/layer2/RepCartoon.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
In file included from layer2/CoordSet.h:24,
from layer2/RepCartoon.h:21,
from layer2/RepCartoon.cpp:27:
layer1/Setting.h: In function 'bool ring_connector_visible(PyMOLGlobals*, const AtomInfoType*, const AtomInfoType*, bool)':
layer1/Setting.h:407:11: warning: 'out' may be used uninitialized in this function [-Wmaybe-uninitialized]
int i = *out;
^~~~
In file included from layer2/ObjectMolecule.h:25,
from layer2/CoordSet.h:25,
from layer2/RepCartoon.h:21,
from layer2/RepCartoon.cpp:27:
layer2/AtomInfo.h:496:5: note: 'out' was declared here
V out;
^~~
In file included from layer2/CoordSet.h:24,
from layer2/RepCartoon.h:21,
from layer2/RepCartoon.cpp:27:
layer1/Setting.h:407:11: warning: 'out' may be used uninitialized in this function [-Wmaybe-uninitialized]
int i = *out;
^~~~
In file included from layer2/ObjectMolecule.h:25,
from layer2/CoordSet.h:25,
from layer2/RepCartoon.h:21,
from layer2/RepCartoon.cpp:27:
layer2/AtomInfo.h:496:5: note: 'out' was declared here
V out;
^~~
layer2/RepCartoon.cpp: In function 'int GenerateRepCartoonProcessCylindricalHelices(PyMOLGlobals*, ObjectMolecule*, CoordSet*, CGO*, CExtrude*, int, int*, float*, float*, float*, const CCInOut*, int*, float*, int, int, float, float)':
layer2/RepCartoon.cpp:1659:20: warning: 'atom_index2' may be used uninitialized in this function [-Wmaybe-uninitialized]
int atom_index1, atom_index2, *s,
^~~~~~~~~~~
layer2/RepCartoon.cpp: In function 'void do_ring(PyMOLGlobals*, nuc_acid_data*, int, int*, ObjectMolecule*, CoordSet*, float, CGO*, int, float, int, int, int, float, float, int*, float*, float)':
layer2/RepCartoon.cpp:1098:67: warning: 'i' may be used uninitialized in this function [-Wmaybe-uninitialized]
float ladder_alpha = 1.0f - AtomSettingGetWD(G, ai_i[i], cSetting_cartoon_transparency, 1.0f - alpha);
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepCylBond.cpp -o build/temp.linux-i686-2.7/layer2/RepCylBond.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepDihedral.cpp -o build/temp.linux-i686-2.7/layer2/RepDihedral.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepDistDash.cpp -o build/temp.linux-i686-2.7/layer2/RepDistDash.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepDistLabel.cpp -o build/temp.linux-i686-2.7/layer2/RepDistLabel.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepDot.cpp -o build/temp.linux-i686-2.7/layer2/RepDot.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepEllipsoid.cpp -o build/temp.linux-i686-2.7/layer2/RepEllipsoid.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepLabel.cpp -o build/temp.linux-i686-2.7/layer2/RepLabel.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepMesh.cpp -o build/temp.linux-i686-2.7/layer2/RepMesh.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepNonbonded.cpp -o build/temp.linux-i686-2.7/layer2/RepNonbonded.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepNonbondedSphere.cpp -o build/temp.linux-i686-2.7/layer2/RepNonbondedSphere.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepRibbon.cpp -o build/temp.linux-i686-2.7/layer2/RepRibbon.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepSphere.cpp -o build/temp.linux-i686-2.7/layer2/RepSphere.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
layer2/RepSphere.cpp: In function 'int RepGetSphereMode(PyMOLGlobals*, RepSphere*, bool)':
layer2/RepSphere.cpp:141:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
if (sphere_mode == 4) // sphere_mode 4 no longer exists, use default
^~
layer2/RepSphere.cpp:143:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
switch (sphere_mode) {
^~~~~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepSphereGenerate.cpp -o build/temp.linux-i686-2.7/layer2/RepSphereGenerate.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepSphereImmediate.cpp -o build/temp.linux-i686-2.7/layer2/RepSphereImmediate.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepSurface.cpp -o build/temp.linux-i686-2.7/layer2/RepSurface.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
layer2/RepSurface.cpp: In function 'int RepSurfaceCGOGenerate(RepSurface*, RenderInfo*)':
layer2/RepSurface.cpp:669:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
if (ok && pick_surface)
^~
layer2/RepSurface.cpp:671:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
if (ok && I->VAO){
^~
layer2/RepSurface.cpp: In function 'void RepSurfaceSmoothEdges(RepSurface*)':
layer2/RepSurface.cpp:4417:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'unsigned int'} [-Wsign-compare]
for (auto j = 0; j < edges[i].size(); j += 3) {
~~^~~~~~~~~~~~~~~~~
layer2/RepSurface.cpp:4429:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'unsigned int'} [-Wsign-compare]
for (auto j = 0; j < edges[i].size(); j += 3) {
~~^~~~~~~~~~~~~~~~~
layer2/RepSurface.cpp:4440:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'unsigned int'} [-Wsign-compare]
for (auto i = 0; i < unique_edges.size(); i += 2) {
~~^~~~~~~~~~~~~~~~~~~~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepWireBond.cpp -o build/temp.linux-i686-2.7/layer2/RepWireBond.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/Sculpt.cpp -o build/temp.linux-i686-2.7/layer2/Sculpt.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/SculptCache.cpp -o build/temp.linux-i686-2.7/layer2/SculptCache.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/SideChainHelper.cpp -o build/temp.linux-i686-2.7/layer2/SideChainHelper.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
In file included from layer1/PyMOLObject.h:26,
from layer2/ObjectMolecule.h:24,
from layer2/SideChainHelper.h:9,
from layer2/SideChainHelper.cpp:10:
layer1/Setting.h: In function 'void SideChainHelperMarkNonCartoonBonded(bool*, const ObjectMolecule*, const CoordSet*, bool, bool)':
layer1/Setting.h:407:11: warning: 'out' may be used uninitialized in this function [-Wmaybe-uninitialized]
int i = *out;
^~~~
In file included from layer2/ObjectMolecule.h:25,
from layer2/SideChainHelper.h:9,
from layer2/SideChainHelper.cpp:10:
layer2/AtomInfo.h:496:5: note: 'out' was declared here
V out;
^~~
In file included from layer1/PyMOLObject.h:26,
from layer2/ObjectMolecule.h:24,
from layer2/SideChainHelper.h:9,
from layer2/SideChainHelper.cpp:10:
layer1/Setting.h:407:11: warning: 'out' may be used uninitialized in this function [-Wmaybe-uninitialized]
int i = *out;
^~~~
In file included from layer2/ObjectMolecule.h:25,
from layer2/SideChainHelper.h:9,
from layer2/SideChainHelper.cpp:10:
layer2/AtomInfo.h:496:5: note: 'out' was declared here
V out;
^~~
In file included from layer1/PyMOLObject.h:26,
from layer2/ObjectMolecule.h:24,
from layer2/SideChainHelper.h:9,
from layer2/SideChainHelper.cpp:10:
layer1/Setting.h:407:11: warning: 'out' may be used uninitialized in this function [-Wmaybe-uninitialized]
int i = *out;
^~~~
In file included from layer2/ObjectMolecule.h:25,
from layer2/SideChainHelper.h:9,
from layer2/SideChainHelper.cpp:10:
layer2/AtomInfo.h:496:5: note: 'out' was declared here
V out;
^~~
In file included from layer1/PyMOLObject.h:26,
from layer2/ObjectMolecule.h:24,
from layer2/SideChainHelper.h:9,
from layer2/SideChainHelper.cpp:10:
layer1/Setting.h:407:11: warning: 'out' may be used uninitialized in this function [-Wmaybe-uninitialized]
int i = *out;
^~~~
In file included from layer2/ObjectMolecule.h:25,
from layer2/SideChainHelper.h:9,
from layer2/SideChainHelper.cpp:10:
layer2/AtomInfo.h:496:5: note: 'out' was declared here
V out;
^~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/VFont.cpp -o build/temp.linux-i686-2.7/layer2/VFont.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/AtomIterators.cpp -o build/temp.linux-i686-2.7/layer3/AtomIterators.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
layer3/AtomIterators.cpp: In member function 'virtual bool SeleAtomIterator::next()':
layer3/AtomIterators.cpp:58:16: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
while ((++a) < I->NAtom) {
~~~~~~^~~~~~~~~~
layer3/AtomIterators.cpp: In member function 'virtual bool SeleCoordIterator::next()':
layer3/AtomIterators.cpp:114:15: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for (a++; a < I->NAtom; a++) {
~~^~~~~~~~~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/CifDataValueFormatter.cpp -o build/temp.linux-i686-2.7/layer3/CifDataValueFormatter.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/Editor.cpp -o build/temp.linux-i686-2.7/layer3/Editor.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
layer3/Editor.cpp: In function 'int EditorLogState(PyMOLGlobals*, int)':
layer3/Editor.cpp:588:23: warning: '%s' directive writing up to 1023 bytes into a region of size 1015 [-Wformat-overflow=]
sprintf(buffer, "cmd.edit(%s,%s,%s,%s,pkresi=%d,pkbond=%d)",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
buf1, buf2, buf3, buf4, pkresi ? 1 : 0, pkbond ? 1 : 0);
~~~~
layer3/Editor.cpp:588:23: note: directive argument in the range [0, 1]
layer3/Editor.cpp:588:23: note: directive argument in the range [0, 1]
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer3/Editor.cpp:17:
/usr/include/bits/stdio2.h:33:34: note: '__builtin___sprintf_chk' output between 32 and 4124 bytes into a destination of size 1024
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Editor.cpp: In function 'void EditorHFill(PyMOLGlobals*, int)':
layer3/Editor.cpp:1026:20: warning: '%s' directive writing up to 1023 bytes into a region of size 1012 [-Wformat-overflow=]
sprintf(buffer, "((neighbor (%s)) and hydro and not (%s))",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s2, s2);
~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer3/Editor.cpp:17:
/usr/include/bits/stdio2.h:33:34: note: '__builtin___sprintf_chk' output between 37 and 2083 bytes into a destination of size 1024
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Editor.cpp: In function 'void EditorPrepareDrag(PyMOLGlobals*, CObject*, int, int, int, int)':
layer3/Editor.cpp:1902:9: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 236 [-Wformat-truncation=]
" Editor: grabbing (%s).", name ENDFB(G);
^~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer3/Editor.cpp:17:
/usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 22 and 277 bytes into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Editor.cpp: In function 'void EditorDefineExtraPks(PyMOLGlobals*)':
layer3/Editor.cpp:338:21: warning: '%s' directive writing up to 255 bytes into a region of size 249 [-Wformat-overflow=]
sprintf(buffer, "(byres %s)", name);
^~~~~~~~~~~~ ~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer3/Editor.cpp:17:
/usr/include/bits/stdio2.h:33:34: note: '__builtin___sprintf_chk' output between 9 and 264 bytes into a destination of size 256
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Editor.cpp:340:21: warning: '%s' directive writing up to 255 bytes into a region of size 247 [-Wformat-overflow=]
sprintf(buffer, "(bychain %s)", name);
^~~~~~~~~~~~~~ ~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer3/Editor.cpp:17:
/usr/include/bits/stdio2.h:33:34: note: '__builtin___sprintf_chk' output between 11 and 266 bytes into a destination of size 256
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Editor.cpp:342:21: warning: '%s' directive writing up to 255 bytes into a region of size 246 [-Wformat-overflow=]
sprintf(buffer, "(byobject %s)", name);
^~~~~~~~~~~~~~~ ~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer3/Editor.cpp:17:
/usr/include/bits/stdio2.h:33:34: note: '__builtin___sprintf_chk' output between 12 and 267 bytes into a destination of size 256
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/Executive.cpp -o build/temp.linux-i686-2.7/layer3/Executive.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
layer3/Executive.cpp: In function 'void ExecutiveUpdateGridSlots(PyMOLGlobals*, int)':
layer3/Executive.cpp:1440:18: warning: enumeration value 'cObjectCalculator' not handled in switch [-Wswitch]
switch (rec->obj->type) {
^
layer3/Executive.cpp:1440:18: warning: enumeration value 'cObjectAlignment' not handled in switch [-Wswitch]
layer3/Executive.cpp: In function 'void ExecutiveUpdateCoordDepends(PyMOLGlobals*, ObjectMolecule*)':
layer3/Executive.cpp:1968:13: warning: enumeration value 'cObjectMolecule' not handled in switch [-Wswitch]
switch(rec->obj->type) {
^
layer3/Executive.cpp:1968:13: warning: enumeration value 'cObjectMap' not handled in switch [-Wswitch]
layer3/Executive.cpp:1968:13: warning: enumeration value 'cObjectMesh' not handled in switch [-Wswitch]
layer3/Executive.cpp:1968:13: warning: enumeration value 'cObjectCallback' not handled in switch [-Wswitch]
layer3/Executive.cpp:1968:13: warning: enumeration value 'cObjectCGO' not handled in switch [-Wswitch]
layer3/Executive.cpp:1968:13: warning: enumeration value 'cObjectSurface' not handled in switch [-Wswitch]
layer3/Executive.cpp:1968:13: warning: enumeration value 'cObjectCalculator' not handled in switch [-Wswitch]
layer3/Executive.cpp:1968:13: warning: enumeration value 'cObjectSlice' not handled in switch [-Wswitch]
layer3/Executive.cpp:1968:13: warning: enumeration value 'cObjectAlignment' not handled in switch [-Wswitch]
layer3/Executive.cpp:1968:13: warning: enumeration value 'cObjectGroup' not handled in switch [-Wswitch]
layer3/Executive.cpp:1968:13: warning: enumeration value 'cObjectVolume' not handled in switch [-Wswitch]
layer3/Executive.cpp: In function 'void ExecutiveInvalidateMapDependents(PyMOLGlobals*, const char*, const char*)':
layer3/Executive.cpp:2860:14: warning: enumeration value 'cObjectMolecule' not handled in switch [-Wswitch]
switch (rec->obj->type) {
^
layer3/Executive.cpp:2860:14: warning: enumeration value 'cObjectMap' not handled in switch [-Wswitch]
layer3/Executive.cpp:2860:14: warning: enumeration value 'cObjectMeasurement' not handled in switch [-Wswitch]
layer3/Executive.cpp:2860:14: warning: enumeration value 'cObjectCallback' not handled in switch [-Wswitch]
layer3/Executive.cpp:2860:14: warning: enumeration value 'cObjectCGO' not handled in switch [-Wswitch]
layer3/Executive.cpp:2860:14: warning: enumeration value 'cObjectGadget' not handled in switch [-Wswitch]
layer3/Executive.cpp:2860:14: warning: enumeration value 'cObjectCalculator' not handled in switch [-Wswitch]
layer3/Executive.cpp:2860:14: warning: enumeration value 'cObjectSlice' not handled in switch [-Wswitch]
layer3/Executive.cpp:2860:14: warning: enumeration value 'cObjectAlignment' not handled in switch [-Wswitch]
layer3/Executive.cpp:2860:14: warning: enumeration value 'cObjectGroup' not handled in switch [-Wswitch]
layer3/Executive.cpp: In function 'void ExecutiveResetMatrix(PyMOLGlobals*, const char*, int, int, int, int)':
layer3/Executive.cpp:2896:16: warning: enumeration value 'cObjectMesh' not handled in switch [-Wswitch]
switch (obj->type) {
^
layer3/Executive.cpp:2896:16: warning: enumeration value 'cObjectMeasurement' not handled in switch [-Wswitch]
layer3/Executive.cpp:2896:16: warning: enumeration value 'cObjectCallback' not handled in switch [-Wswitch]
layer3/Executive.cpp:2896:16: warning: enumeration value 'cObjectCGO' not handled in switch [-Wswitch]
layer3/Executive.cpp:2896:16: warning: enumeration value 'cObjectSurface' not handled in switch [-Wswitch]
layer3/Executive.cpp:2896:16: warning: enumeration value 'cObjectGadget' not handled in switch [-Wswitch]
layer3/Executive.cpp:2896:16: warning: enumeration value 'cObjectCalculator' not handled in switch [-Wswitch]
layer3/Executive.cpp:2896:16: warning: enumeration value 'cObjectSlice' not handled in switch [-Wswitch]
layer3/Executive.cpp:2896:16: warning: enumeration value 'cObjectAlignment' not handled in switch [-Wswitch]
layer3/Executive.cpp:2896:16: warning: enumeration value 'cObjectVolume' not handled in switch [-Wswitch]
layer3/Executive.cpp: In function 'int ExecutiveGetObjectMatrix2(PyMOLGlobals*, CObject*, int, double**, int)':
layer3/Executive.cpp:2951:12: warning: enumeration value 'cObjectMesh' not handled in switch [-Wswitch]
switch (obj->type) {
^
layer3/Executive.cpp:2951:12: warning: enumeration value 'cObjectMeasurement' not handled in switch [-Wswitch]
layer3/Executive.cpp:2951:12: warning: enumeration value 'cObjectCallback' not handled in switch [-Wswitch]
layer3/Executive.cpp:2951:12: warning: enumeration value 'cObjectCGO' not handled in switch [-Wswitch]
layer3/Executive.cpp:2951:12: warning: enumeration value 'cObjectSurface' not handled in switch [-Wswitch]
layer3/Executive.cpp:2951:12: warning: enumeration value 'cObjectGadget' not handled in switch [-Wswitch]
layer3/Executive.cpp:2951:12: warning: enumeration value 'cObjectCalculator' not handled in switch [-Wswitch]
layer3/Executive.cpp:2951:12: warning: enumeration value 'cObjectSlice' not handled in switch [-Wswitch]
layer3/Executive.cpp:2951:12: warning: enumeration value 'cObjectAlignment' not handled in switch [-Wswitch]
layer3/Executive.cpp:2951:12: warning: enumeration value 'cObjectVolume' not handled in switch [-Wswitch]
layer3/Executive.cpp: In function 'int ExecutiveSetObjectMatrix2(PyMOLGlobals*, CObject*, int, double*)':
layer3/Executive.cpp:3003:12: warning: enumeration value 'cObjectMesh' not handled in switch [-Wswitch]
switch (obj->type) {
^
layer3/Executive.cpp:3003:12: warning: enumeration value 'cObjectMeasurement' not handled in switch [-Wswitch]
layer3/Executive.cpp:3003:12: warning: enumeration value 'cObjectCallback' not handled in switch [-Wswitch]
layer3/Executive.cpp:3003:12: warning: enumeration value 'cObjectCGO' not handled in switch [-Wswitch]
layer3/Executive.cpp:3003:12: warning: enumeration value 'cObjectSurface' not handled in switch [-Wswitch]
layer3/Executive.cpp:3003:12: warning: enumeration value 'cObjectGadget' not handled in switch [-Wswitch]
layer3/Executive.cpp:3003:12: warning: enumeration value 'cObjectCalculator' not handled in switch [-Wswitch]
layer3/Executive.cpp:3003:12: warning: enumeration value 'cObjectSlice' not handled in switch [-Wswitch]
layer3/Executive.cpp:3003:12: warning: enumeration value 'cObjectAlignment' not handled in switch [-Wswitch]
layer3/Executive.cpp:3003:12: warning: enumeration value 'cObjectVolume' not handled in switch [-Wswitch]
layer3/Executive.cpp: In function 'int ExecutiveSetDrag(PyMOLGlobals*, const char*, int, int)':
layer3/Executive.cpp:3301:18: warning: enumeration value 'cObjectMolecule' not handled in switch [-Wswitch]
switch (rec->obj->type) {
^
layer3/Executive.cpp:3301:18: warning: enumeration value 'cObjectMap' not handled in switch [-Wswitch]
layer3/Executive.cpp:3301:18: warning: enumeration value 'cObjectMesh' not handled in switch [-Wswitch]
layer3/Executive.cpp:3301:18: warning: enumeration value 'cObjectMeasurement' not handled in switch [-Wswitch]
layer3/Executive.cpp:3301:18: warning: enumeration value 'cObjectCallback' not handled in switch [-Wswitch]
layer3/Executive.cpp:3301:18: warning: enumeration value 'cObjectCGO' not handled in switch [-Wswitch]
layer3/Executive.cpp:3301:18: warning: enumeration value 'cObjectSurface' not handled in switch [-Wswitch]
layer3/Executive.cpp:3301:18: warning: enumeration value 'cObjectGadget' not handled in switch [-Wswitch]
layer3/Executive.cpp:3301:18: warning: enumeration value 'cObjectCalculator' not handled in switch [-Wswitch]
layer3/Executive.cpp:3301:18: warning: enumeration value 'cObjectSlice' not handled in switch [-Wswitch]
layer3/Executive.cpp:3301:18: warning: enumeration value 'cObjectAlignment' not handled in switch [-Wswitch]
layer3/Executive.cpp:3301:18: warning: enumeration value 'cObjectVolume' not handled in switch [-Wswitch]
layer3/Executive.cpp: In function 'CObject* ExecutiveGetExistingCompatible(PyMOLGlobals*, const char*, cLoadType_t)':
layer3/Executive.cpp:4035:12: warning: enumeration value 'cLoadTypeUnknown' not handled in switch [-Wswitch]
switch (type) {
^
layer3/Executive.cpp:4035:12: warning: enumeration value 'cLoadTypeSDF1' not handled in switch [-Wswitch]
layer3/Executive.cpp:4035:12: warning: enumeration value 'cLoadTypeR3D' not handled in switch [-Wswitch]
layer3/Executive.cpp:4035:12: warning: enumeration value 'cLoadTypePMO' not handled in switch [-Wswitch]
layer3/Executive.cpp:4035:12: warning: enumeration value 'cLoadTypePSE' not handled in switch [-Wswitch]
layer3/Executive.cpp:4035:12: warning: enumeration value 'cLoadTypePHIMap' not handled in switch [-Wswitch]
layer3/Executive.cpp:4035:12: warning: enumeration value 'cLoadTypeP1M' not handled in switch [-Wswitch]
layer3/Executive.cpp:4035:12: warning: enumeration value 'cLoadTypeCUBEMap' not handled in switch [-Wswitch]
layer3/Executive.cpp:4035:12: warning: enumeration value 'cLoadTypePHIStr' not handled in switch [-Wswitch]
layer3/Executive.cpp:4035:12: warning: enumeration value 'cLoadTypeACNTMap' not handled in switch [-Wswitch]
layer3/Executive.cpp:4035:12: warning: enumeration value 'cLoadTypeSpider' not handled in switch [-Wswitch]
layer3/Executive.cpp:4035:12: warning: enumeration value 'cLoadTypeCMS' not handled in switch [-Wswitch]
layer3/Executive.cpp:4035:12: warning: enumeration value 'cLoadTypeMAE' not handled in switch [-Wswitch]
layer3/Executive.cpp:4035:12: warning: enumeration value 'cLoadTypeMAEStr' not handled in switch [-Wswitch]
layer3/Executive.cpp: In function 'CField* ExecutiveGetVolumeField(PyMOLGlobals*, const char*, int)':
layer3/Executive.cpp:4691:10: warning: enumeration value 'cObjectMolecule' not handled in switch [-Wswitch]
switch (obj->type) {
^
layer3/Executive.cpp:4691:10: warning: enumeration value 'cObjectMesh' not handled in switch [-Wswitch]
layer3/Executive.cpp:4691:10: warning: enumeration value 'cObjectMeasurement' not handled in switch [-Wswitch]
layer3/Executive.cpp:4691:10: warning: enumeration value 'cObjectCallback' not handled in switch [-Wswitch]
layer3/Executive.cpp:4691:10: warning: enumeration value 'cObjectCGO' not handled in switch [-Wswitch]
layer3/Executive.cpp:4691:10: warning: enumeration value 'cObjectSurface' not handled in switch [-Wswitch]
layer3/Executive.cpp:4691:10: warning: enumeration value 'cObjectGadget' not handled in switch [-Wswitch]
layer3/Executive.cpp:4691:10: warning: enumeration value 'cObjectCalculator' not handled in switch [-Wswitch]
layer3/Executive.cpp:4691:10: warning: enumeration value 'cObjectSlice' not handled in switch [-Wswitch]
layer3/Executive.cpp:4691:10: warning: enumeration value 'cObjectAlignment' not handled in switch [-Wswitch]
layer3/Executive.cpp:4691:10: warning: enumeration value 'cObjectGroup' not handled in switch [-Wswitch]
layer3/Executive.cpp: In function 'int ExecutiveSetSymmetry(PyMOLGlobals*, const char*, int, float, float, float, float, float, float, const char*)':
layer3/Executive.cpp:6214:14: warning: enumeration value 'cObjectMesh' not handled in switch [-Wswitch]
switch (obj->type) {
^
layer3/Executive.cpp:6214:14: warning: enumeration value 'cObjectMeasurement' not handled in switch [-Wswitch]
layer3/Executive.cpp:6214:14: warning: enumeration value 'cObjectCallback' not handled in switch [-Wswitch]
layer3/Executive.cpp:6214:14: warning: enumeration value 'cObjectCGO' not handled in switch [-Wswitch]
layer3/Executive.cpp:6214:14: warning: enumeration value 'cObjectSurface' not handled in switch [-Wswitch]
layer3/Executive.cpp:6214:14: warning: enumeration value 'cObjectGadget' not handled in switch [-Wswitch]
layer3/Executive.cpp:6214:14: warning: enumeration value 'cObjectCalculator' not handled in switch [-Wswitch]
layer3/Executive.cpp:6214:14: warning: enumeration value 'cObjectSlice' not handled in switch [-Wswitch]
layer3/Executive.cpp:6214:14: warning: enumeration value 'cObjectAlignment' not handled in switch [-Wswitch]
layer3/Executive.cpp:6214:14: warning: enumeration value 'cObjectGroup' not handled in switch [-Wswitch]
layer3/Executive.cpp:6214:14: warning: enumeration value 'cObjectVolume' not handled in switch [-Wswitch]
layer3/Executive.cpp: In function 'int ExecutiveTransformObjectSelection2(PyMOLGlobals*, CObject*, int, const char*, int, float*, int, int)':
layer3/Executive.cpp:7947:10: warning: enumeration value 'cObjectMesh' not handled in switch [-Wswitch]
switch (obj->type) {
^
layer3/Executive.cpp:7947:10: warning: enumeration value 'cObjectMeasurement' not handled in switch [-Wswitch]
layer3/Executive.cpp:7947:10: warning: enumeration value 'cObjectCallback' not handled in switch [-Wswitch]
layer3/Executive.cpp:7947:10: warning: enumeration value 'cObjectCGO' not handled in switch [-Wswitch]
layer3/Executive.cpp:7947:10: warning: enumeration value 'cObjectSurface' not handled in switch [-Wswitch]
layer3/Executive.cpp:7947:10: warning: enumeration value 'cObjectGadget' not handled in switch [-Wswitch]
layer3/Executive.cpp:7947:10: warning: enumeration value 'cObjectCalculator' not handled in switch [-Wswitch]
layer3/Executive.cpp:7947:10: warning: enumeration value 'cObjectSlice' not handled in switch [-Wswitch]
layer3/Executive.cpp:7947:10: warning: enumeration value 'cObjectAlignment' not handled in switch [-Wswitch]
layer3/Executive.cpp:7947:10: warning: enumeration value 'cObjectVolume' not handled in switch [-Wswitch]
layer3/Executive.cpp: In function 'void ExecutiveRebuildAll(PyMOLGlobals*)':
layer3/Executive.cpp:9478:14: warning: enumeration value 'cObjectMap' not handled in switch [-Wswitch]
switch (rec->obj->type) {
^
layer3/Executive.cpp:9478:14: warning: enumeration value 'cObjectCallback' not handled in switch [-Wswitch]
layer3/Executive.cpp:9478:14: warning: enumeration value 'cObjectGadget' not handled in switch [-Wswitch]
layer3/Executive.cpp:9478:14: warning: enumeration value 'cObjectCalculator' not handled in switch [-Wswitch]
layer3/Executive.cpp:9478:14: warning: enumeration value 'cObjectGroup' not handled in switch [-Wswitch]
layer3/Executive.cpp:9478:14: warning: enumeration value 'cObjectVolume' not handled in switch [-Wswitch]
layer3/Executive.cpp: In function 'int ExecutiveGetExtent(PyMOLGlobals*, const char*, float*, float*, int, int, int)':
layer3/Executive.cpp:13448:26: warning: enumeration value 'cObjectMolecule' not handled in switch [-Wswitch]
switch (obj->type) {
^
layer3/Executive.cpp:13448:26: warning: enumeration value 'cObjectMeasurement' not handled in switch [-Wswitch]
layer3/Executive.cpp:13448:26: warning: enumeration value 'cObjectCallback' not handled in switch [-Wswitch]
layer3/Executive.cpp:13448:26: warning: enumeration value 'cObjectCGO' not handled in switch [-Wswitch]
layer3/Executive.cpp:13448:26: warning: enumeration value 'cObjectGadget' not handled in switch [-Wswitch]
layer3/Executive.cpp:13448:26: warning: enumeration value 'cObjectCalculator' not handled in switch [-Wswitch]
layer3/Executive.cpp:13448:26: warning: enumeration value 'cObjectSlice' not handled in switch [-Wswitch]
layer3/Executive.cpp:13448:26: warning: enumeration value 'cObjectAlignment' not handled in switch [-Wswitch]
layer3/Executive.cpp:13448:26: warning: enumeration value 'cObjectGroup' not handled in switch [-Wswitch]
layer3/Executive.cpp:13448:26: warning: enumeration value 'cObjectVolume' not handled in switch [-Wswitch]
layer3/Executive.cpp:13480:22: warning: enumeration value 'cObjectMolecule' not handled in switch [-Wswitch]
switch (obj->type) {
^
layer3/Executive.cpp:13480:22: warning: enumeration value 'cObjectMeasurement' not handled in switch [-Wswitch]
layer3/Executive.cpp:13480:22: warning: enumeration value 'cObjectCallback' not handled in switch [-Wswitch]
layer3/Executive.cpp:13480:22: warning: enumeration value 'cObjectCGO' not handled in switch [-Wswitch]
layer3/Executive.cpp:13480:22: warning: enumeration value 'cObjectGadget' not handled in switch [-Wswitch]
layer3/Executive.cpp:13480:22: warning: enumeration value 'cObjectCalculator' not handled in switch [-Wswitch]
layer3/Executive.cpp:13480:22: warning: enumeration value 'cObjectSlice' not handled in switch [-Wswitch]
layer3/Executive.cpp:13480:22: warning: enumeration value 'cObjectAlignment' not handled in switch [-Wswitch]
layer3/Executive.cpp:13480:22: warning: enumeration value 'cObjectGroup' not handled in switch [-Wswitch]
layer3/Executive.cpp:13480:22: warning: enumeration value 'cObjectVolume' not handled in switch [-Wswitch]
layer3/Executive.cpp: In function 'void ExecutiveSymExp(PyMOLGlobals*, const char*, const char*, const char*, float, int, int)':
layer3/Executive.cpp:14632:28: warning: comparison of integer expressions of different signedness: 'ov_size' {aka 'unsigned int'} and 'int' [-Wsign-compare]
for(a = 0; a < nsymmat; a++) {
~~^~~~~~~~~
layer3/Executive.cpp: In member function 'virtual int CExecutive::click(int, int, int, int)':
layer3/Executive.cpp:15258:26: warning: enumeration value 'cObjectCalculator' not handled in switch [-Wswitch]
switch (rec->obj->type) {
^
layer3/Executive.cpp:15301:26: warning: enumeration value 'cObjectCallback' not handled in switch [-Wswitch]
switch (rec->obj->type) {
^
layer3/Executive.cpp:15301:26: warning: enumeration value 'cObjectGadget' not handled in switch [-Wswitch]
layer3/Executive.cpp:15301:26: warning: enumeration value 'cObjectCalculator' not handled in switch [-Wswitch]
layer3/Executive.cpp:15343:26: warning: enumeration value 'cObjectCallback' not handled in switch [-Wswitch]
switch (rec->obj->type) {
^
layer3/Executive.cpp:15343:26: warning: enumeration value 'cObjectGadget' not handled in switch [-Wswitch]
layer3/Executive.cpp:15343:26: warning: enumeration value 'cObjectCalculator' not handled in switch [-Wswitch]
layer3/Executive.cpp:15386:26: warning: enumeration value 'cObjectCallback' not handled in switch [-Wswitch]
switch (rec->obj->type) {
^
layer3/Executive.cpp:15386:26: warning: enumeration value 'cObjectCGO' not handled in switch [-Wswitch]
layer3/Executive.cpp:15386:26: warning: enumeration value 'cObjectGadget' not handled in switch [-Wswitch]
layer3/Executive.cpp:15386:26: warning: enumeration value 'cObjectCalculator' not handled in switch [-Wswitch]
layer3/Executive.cpp:15386:26: warning: enumeration value 'cObjectAlignment' not handled in switch [-Wswitch]
layer3/Executive.cpp:15386:26: warning: enumeration value 'cObjectVolume' not handled in switch [-Wswitch]
layer3/Executive.cpp:15409:26: warning: enumeration value 'cObjectCallback' not handled in switch [-Wswitch]
switch (rec->obj->type) {
^
layer3/Executive.cpp:15409:26: warning: enumeration value 'cObjectCalculator' not handled in switch [-Wswitch]
layer3/Executive.cpp:15449:26: warning: enumeration value 'cObjectCallback' not handled in switch [-Wswitch]
switch (rec->obj->type) {
^
layer3/Executive.cpp:15449:26: warning: enumeration value 'cObjectGadget' not handled in switch [-Wswitch]
layer3/Executive.cpp:15449:26: warning: enumeration value 'cObjectCalculator' not handled in switch [-Wswitch]
layer3/Executive.cpp:15449:26: warning: enumeration value 'cObjectSlice' not handled in switch [-Wswitch]
layer3/Executive.cpp:15449:26: warning: enumeration value 'cObjectAlignment' not handled in switch [-Wswitch]
layer3/Executive.cpp:15449:26: warning: enumeration value 'cObjectVolume' not handled in switch [-Wswitch]
In file included from layer0/OOMac.h:22,
from layer3/Executive.cpp:29:
layer3/Executive.cpp: In function 'void ExecutiveFree(PyMOLGlobals*)':
layer3/Executive.cpp:16823:14: warning: deleting object of polymorphic class type 'CExecutive' which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
DeleteP(G->Executive);
^~~~~~~~~
layer0/MemoryDebug.h:54:39: note: in definition of macro 'DeleteP'
#define DeleteP(ptr) {if(ptr) {delete ptr;ptr=NULL;}}
^~~
layer3/Executive.cpp: In function 'void ExecutiveRemoveAtoms(PyMOLGlobals*, const char*, int)':
layer3/Executive.cpp:9661:17: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 207 and 217 [-Wformat-truncation=]
" Remove: eliminated %d atoms in model \"%s\".\n",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer3/Executive.cpp:16:
/usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 42 and 307 bytes into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In function 'int ExecutiveBond(PyMOLGlobals*, const char*, const char*, int, int, int)':
layer3/Executive.cpp:10006:19: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 200 and 210 [-Wformat-truncation=]
" Valence: %d bond valences adjusted in model \"%s\".\n", cnt,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer3/Executive.cpp:16:
/usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 49 and 314 bytes into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:9993:19: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 214 and 224 [-Wformat-truncation=]
" Bond: %d bonds added to model \"%s\".\n", cnt, rec->obj->Name
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer3/Executive.cpp:16:
/usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 35 and 300 bytes into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:10018:19: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 208 and 218 [-Wformat-truncation=]
" Unbond: %d bonds removed from model \"%s\".\n",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer3/Executive.cpp:16:
/usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 41 and 306 bytes into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In function 'int ExecutiveSetBondSettingFromString(PyMOLGlobals*, int, const char*, const char*, const char*, int, int, int)':
layer3/Executive.cpp:12101:17: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
" Setting: %s set for %d bonds in object \"%s\".\n",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
name, nSet, obj->Obj.Name ENDF(G);
~~~~
layer3/Executive.cpp:12101:17: note: directive argument in the range [1, 2147483647]
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer3/Executive.cpp:16:
/usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 42 and 560 bytes into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In function 'PyObject* ExecutiveGetBondSetting(PyMOLGlobals*, int, char*, const char*, int, int, int)':
layer3/Executive.cpp:12184:8: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
" Getting: %s for %d bonds in object \"%s\".\n",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
name, nSet, obj->Obj.Name ENDF(G);
~~~~
layer3/Executive.cpp:12184:8: note: directive argument in the range [1, 2147483647]
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer3/Executive.cpp:16:
/usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 38 and 556 bytes into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In function 'int ExecutiveSetBondSetting(PyMOLGlobals*, int, PyObject*, const char*, const char*, int, int, int)':
layer3/Executive.cpp:12286:19: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
" Setting: %s set for %d bonds in object \"%s\".\n",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
name, nSet, obj->Obj.Name ENDF(G);
~~~~
layer3/Executive.cpp:12286:19: note: directive argument in the range [1, 2147483647]
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer3/Executive.cpp:16:
/usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 42 and 560 bytes into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:12305:7: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 236 [-Wformat-truncation=]
" Setting-Warning: '%s' is not a bond-level setting\n", name
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer3/Executive.cpp:16:
/usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 50 and 304 bytes into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In function 'int ExecutiveUnsetBondSetting(PyMOLGlobals*, int, const char*, const char*, int, int, int)':
layer3/Executive.cpp:12362:15: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
" Setting: %s unset for %d bonds in object \"%s\".\n",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
name, nSet, rec->obj->Name ENDF(G);
~~~~
layer3/Executive.cpp:12362:15: note: directive argument in the range [1, 2147483647]
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer3/Executive.cpp:16:
/usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 44 and 562 bytes into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In function 'int ExecutiveSetSetting(PyMOLGlobals*, int, PyObject*, const char*, int, int, int)':
layer3/Executive.cpp:12600:9: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 236 [-Wformat-truncation=]
" Setting-Warning: '%s' is a %s-level setting\n", name, SettingLevelGetName(G, index)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer3/Executive.cpp:16:
/usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output 42 or more bytes (assuming 296) into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:12456:21: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
" Setting: %s set to %s in %d objects, state %d.\n",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
name, value, nObj, state + 1 ENDF(G);
~~~~
layer3/Executive.cpp:12456:21: note: directive argument in the range [1, 2147483647]
layer3/Executive.cpp:12456:21: note: directive argument in the range [1, 2147483647]
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer3/Executive.cpp:16:
/usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 43 and 1338 bytes into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:12453:21: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
" Setting: %s set to %s in %d objects.\n", name, value, nObj ENDF(G);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~
layer3/Executive.cpp:12453:21: note: directive argument in the range [1, 2147483647]
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer3/Executive.cpp:16:
/usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 34 and 1320 bytes into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:12545:27: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
" Setting: %s set for %d atoms in object \"%s\".\n",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
name, op.i4, rec->obj->Name ENDF(G);
~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer3/Executive.cpp:16:
/usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 42 and 561 bytes into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:12545:27: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
" Setting: %s set for %d atoms in object \"%s\".\n",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
name, op.i4, rec->obj->Name ENDF(G);
~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer3/Executive.cpp:16:
/usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 42 and 561 bytes into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:12577:25: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
" Setting: %s set to %s in object \"%s\", state %d.\n",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
name, value, rec->obj->Name, state + 1 ENDF(G);
~~~~
layer3/Executive.cpp:12577:25: note: directive argument in the range [1, 2147483647]
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer3/Executive.cpp:16:
/usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 43 and 1584 bytes into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:12570:25: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
" Setting: %s set to %s in object \"%s\".\n",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
name, value, rec->obj->Name ENDF(G);
~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer3/Executive.cpp:16:
/usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 34 and 1566 bytes into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:12412:18: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
PRINTF " Setting: %s set to %s.\n", name, value ENDF(G);
^~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer3/Executive.cpp:16:
/usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 21 and 1298 bytes into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In function 'int ExecutiveSetSettingFromString(PyMOLGlobals*, int, const char*, const char*, int, int, int)':
layer3/Executive.cpp:12762:21: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
" Setting: %s set to %s in %d objects, state %d.\n",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
name, value2, nObj, state + 1 ENDF(G);
~~~~
layer3/Executive.cpp:12762:21: note: directive argument in the range [1, 2147483647]
layer3/Executive.cpp:12762:21: note: directive argument in the range [1, 2147483647]
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer3/Executive.cpp:16:
/usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 43 and 1338 bytes into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:12759:21: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
" Setting: %s set to %s in %d objects.\n", name, value2, nObj ENDF(G);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~
layer3/Executive.cpp:12759:21: note: directive argument in the range [1, 2147483647]
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer3/Executive.cpp:16:
/usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 34 and 1320 bytes into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:12794:25: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
" Setting: %s set for %d atoms in object \"%s\".\n",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
name, op.i4, rec->obj->Name ENDF(G);
~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer3/Executive.cpp:16:
/usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 42 and 561 bytes into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:12826:25: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
" Setting: %s set to %s in object \"%s\", state %d.\n",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
name, value2, rec->obj->Name, state + 1 ENDF(G);
~~~~
layer3/Executive.cpp:12826:25: note: directive argument in the range [1, 2147483647]
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer3/Executive.cpp:16:
/usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 43 and 1584 bytes into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:12818:25: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
" Setting: %s set to %s in object \"%s\".\n",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
name, value2, rec->obj->Name ENDF(G);
~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer3/Executive.cpp:16:
/usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 34 and 1566 bytes into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:12722:18: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G);
^~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer3/Executive.cpp:16:
/usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 21 and 1298 bytes into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In function 'int ExecutiveSetObjSettingFromString(PyMOLGlobals*, int, const char*, CObject*, int, int, int)':
layer3/Executive.cpp:12891:19: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
" Setting: %s set to %s in object \"%s\", state %d.\n",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
name, value2, obj->Name, state + 1 ENDF(G);
~~~~
layer3/Executive.cpp:12891:19: note: directive argument in the range [1, 2147483647]
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer3/Executive.cpp:16:
/usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 43 and 1584 bytes into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:12883:19: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
" Setting: %s set to %s in object \"%s\".\n",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
name, value2, obj->Name ENDF(G);
~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer3/Executive.cpp:16:
/usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 34 and 1566 bytes into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:12862:18: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G);
^~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer3/Executive.cpp:16:
/usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 21 and 1298 bytes into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In function 'int ExecutiveUnsetSetting(PyMOLGlobals*, int, const char*, int, int, int)':
layer3/Executive.cpp:13001:23: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 215 [-Wformat-truncation=]
" Setting: %s unset for %d atoms in object \"%s\".\n",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer3/Executive.cpp:16:
/usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output 44 or more bytes (assuming 299) into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:13026:25: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 227 [-Wformat-truncation=]
" Setting: %s unset in object \"%s\", state %d.\n",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:13026:25: note: directive argument in the range [1, 2147483647]
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer3/Executive.cpp:16:
/usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output 41 or more bytes (assuming 305) into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:13020:25: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 227 [-Wformat-truncation=]
" Setting: %s unset in object \"%s\".\n",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer3/Executive.cpp:16:
/usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output 32 or more bytes (assuming 287) into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In member function 'virtual int CExecutive::drag(int, int, int)':
layer3/Executive.cpp:16051:42: warning: '%s' directive writing up to 1023 bytes into a region of size 1013 [-Wformat-overflow=]
sprintf(I->ReorderLog, "cmd.order(\"%s\",location=\"%s\")\n",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
order_input, (location == -2) ? "upper" : "current");
~~~~~~~~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer3/Executive.cpp:16:
/usr/include/bits/stdio2.h:33:34: note: '__builtin___sprintf_chk' output between 32 and 1057 bytes into a destination of size 1024
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In function 'void ExecutiveManageObject(PyMOLGlobals*, CObject*, int, int)':
layer3/Executive.cpp:15046:13: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 235 [-Wformat-truncation=]
" Executive: object \"%s\" created.\n", obj->Name ENDFB(G);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer3/Executive.cpp:16:
/usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 32 and 287 bytes into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:15054:9: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=]
" Executive: object name \"%s\" is illegal -- renamed to 'all_'.\n", obj->Name
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer3/Executive.cpp:16:
/usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 61 and 316 bytes into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:15060:9: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 229 [-Wformat-truncation=]
" Executive-Warning: name \"%s\" collides with a selection language keyword.\n",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer3/Executive.cpp:16:
/usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 73 and 328 bytes into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In function 'int ExecutiveGroup(PyMOLGlobals*, const char*, const char*, int, int)':
layer3/Executive.cpp:2311:19: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 235 [-Wformat-truncation=]
" Executive: adding '%s' to group '%s'.\n", rec->name, rec->group_name
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer3/Executive.cpp:16:
/usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 36 and 546 bytes into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In function 'int ExecutiveSetName(PyMOLGlobals*, const char*, const char*)':
layer3/Executive.cpp:3577:7: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 234 [-Wformat-truncation=]
"SetName-Error: name '%s' is a selection keyword.\n", name ENDFB(G);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer3/Executive.cpp:16:
/usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 48 and 303 bytes into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In function 'int ExecutiveSetSession(PyMOLGlobals*, PyObject*, int, int)':
layer3/Executive.cpp:5231:13: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 213 [-Wformat-truncation=]
" Executive: skipping unrecognized object \"%s\" of type %d.\n",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer3/Executive.cpp:16:
/usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 56 and 321 bytes into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:5256:11: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 210 [-Wformat-truncation=]
"ExectiveSetNamedEntries-Error: after object \"%s\".\n", rec->name ENDFB(G);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer3/Executive.cpp:16:
/usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 49 and 304 bytes into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In function 'void ExecutiveSelectRect(PyMOLGlobals*, BlockRect*, int)':
layer3/Executive.cpp:7629:27: warning: '%s' directive writing up to 1023 bytes into a region of size between 751 and 1008 [-Wformat-overflow=]
sprintf(buf2, "%scmd.select(\"%s\",\"(%s)\",enable=1)\n", prefix, selName,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
buffer);
~~~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer3/Executive.cpp:16:
/usr/include/bits/stdio2.h:33:34: note: '__builtin___sprintf_chk' output between 30 and 1310 bytes into a destination of size 1024
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:7638:27: warning: '%s' directive writing up to 1023 bytes into a region of size between 752 and 1009 [-Wformat-overflow=]
sprintf(buf2, "%scmd.select(\"%s\",\"%s\",enable=1)\n", prefix, selName,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
buffer);
~~~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer3/Executive.cpp:16:
/usr/include/bits/stdio2.h:33:34: note: '__builtin___sprintf_chk' output between 28 and 1308 bytes into a destination of size 1024
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In function 'void ExecutiveCopy(PyMOLGlobals*, const char*, const char*, int)':
layer3/Executive.cpp:10400:9: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 236 [-Wformat-truncation=]
" Executive: object %s created.\n", oDst->Obj.Name ENDFB(G);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer3/Executive.cpp:16:
/usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 30 and 285 bytes into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In function 'void ExecutiveSymExp(PyMOLGlobals*, const char*, const char*, const char*, float, int, int)':
layer3/Executive.cpp:14716:21: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 238 [-Wformat-truncation=]
"new_name before: %s\n", new_name ENDFB(G);
^~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer3/Executive.cpp:16:
/usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 19 and 1042 bytes into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:14719:21: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 236 [-Wformat-truncation=]
"Making new object: %s from name=%s, a=%d, x=%d, y=%d, z=%d\n",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
new_name, name, (int)a, x, y, z ENDFB(G);
~~~~~~~~
layer3/Executive.cpp:14719:21: note: directive argument in the range [-1, 2]
layer3/Executive.cpp:14719:21: note: directive argument in the range [-1, 2]
layer3/Executive.cpp:14719:21: note: directive argument in the range [-1, 2]
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer3/Executive.cpp:16:
/usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output 52 or more bytes (assuming 1078) into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In function 'int ExecutiveProcessPDBFile(PyMOLGlobals*, CObject*, const char*, const char*, const char*, int, int, int, char*, int, int, int, int)':
layer3/Executive.cpp:4254:35: warning: '%04d' directive writing between 4 and 10 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
sprintf(pdb_name, "%s_%04d", cur_name, n_processed + 1);
^~~~~~~~~
layer3/Executive.cpp:4254:35: note: directive argument in the range [1, 2147483647]
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer3/Executive.cpp:16:
/usr/include/bits/stdio2.h:33:34: note: '__builtin___sprintf_chk' output between 6 and 267 bytes into a destination of size 256
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:4252:35: warning: '%04d' directive writing between 4 and 10 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
sprintf(pdb_name, "%s_%04d", cur_name, model_number);
^~~~~~~~~
layer3/Executive.cpp:4252:35: note: directive argument in the range [1, 2147483647]
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer3/Executive.cpp:16:
/usr/include/bits/stdio2.h:33:34: note: '__builtin___sprintf_chk' output between 6 and 267 bytes into a destination of size 256
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:4241:35: warning: '%04d' directive writing between 4 and 10 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
sprintf(pdb_name, "%s_%04d", cur_name, n_processed + 1);
^~~~~~~~~
layer3/Executive.cpp:4241:35: note: directive argument in the range [1, 2147483647]
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer3/Executive.cpp:16:
/usr/include/bits/stdio2.h:33:34: note: '__builtin___sprintf_chk' output between 6 and 267 bytes into a destination of size 256
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:4232:33: warning: '%04d' directive writing between 4 and 10 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
sprintf(pdb_name, "%s_%04d", cur_name, n_processed + 1);
^~~~~~~~~
layer3/Executive.cpp:4232:33: note: directive argument in the range [1, 2147483647]
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer3/Executive.cpp:16:
/usr/include/bits/stdio2.h:33:34: note: '__builtin___sprintf_chk' output between 6 and 267 bytes into a destination of size 256
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:4230:33: warning: '%04d' directive writing between 4 and 10 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
sprintf(pdb_name, "%s_%04d", cur_name, model_number);
^~~~~~~~~
layer3/Executive.cpp:4230:33: note: directive argument in the range [1, 2147483647]
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer3/Executive.cpp:16:
/usr/include/bits/stdio2.h:33:34: note: '__builtin___sprintf_chk' output between 6 and 267 bytes into a destination of size 256
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:4219:33: warning: '%04d' directive writing between 4 and 10 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
sprintf(pdb_name, "%s_%04d", cur_name, n_processed + 1);
^~~~~~~~~
layer3/Executive.cpp:4219:33: note: directive argument in the range [1, 2147483647]
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer3/Executive.cpp:16:
/usr/include/bits/stdio2.h:33:34: note: '__builtin___sprintf_chk' output between 6 and 267 bytes into a destination of size 256
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:4417:39: warning: '%s' directive writing up to 255 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
sprintf(align_name, "%s_%s_alignment",
^~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer3/Executive.cpp:16:
/usr/include/bits/stdio2.h:33:34: note: '__builtin___sprintf_chk' output between 12 and 522 bytes into a destination of size 256
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In function 'int ExecutiveLoad(PyMOLGlobals*, const char*, int, cLoadType_t, const char*, int, int, int, int, int, int, const char*, const char*, const char*, bool)':
layer3/Executive.cpp:4005:7: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 255 [-Wformat-truncation=]
"%s", buf ENDFB(G);
^~~~ ~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer3/Executive.cpp:16:
/usr/include/bits/stdio2.h:64:35: note: '__builtin_snprintf' output between 1 and 1024 bytes into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/MaeExportHelpers.cpp -o build/temp.linux-i686-2.7/layer3/MaeExportHelpers.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
In file included from layer2/AtomInfo.h:23,
from layer3/MaeExportHelpers.h:11,
from layer3/MaeExportHelpers.cpp:11:
layer1/Setting.h: In function 'int MaeExportGetAtomStyle(PyMOLGlobals*, const SeleCoordIterator&)':
layer1/Setting.h:407:11: warning: 'out' may be used uninitialized in this function [-Wmaybe-uninitialized]
int i = *out;
^~~~
In file included from layer3/MaeExportHelpers.h:11,
from layer3/MaeExportHelpers.cpp:11:
layer2/AtomInfo.h:496:5: note: 'out' was declared here
V out;
^~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/MoleculeExporter.cpp -o build/temp.linux-i686-2.7/layer3/MoleculeExporter.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/MovieScene.cpp -o build/temp.linux-i686-2.7/layer3/MovieScene.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/PlugIOManager.cpp -o build/temp.linux-i686-2.7/layer3/PlugIOManager.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
layer3/PlugIOManager.cpp: In function 'CObject* PlugIOManagerLoad(PyMOLGlobals*, CObject**, const char*, int, int, const char*)':
layer3/PlugIOManager.cpp:896:9: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 200 [-Wformat-truncation=]
" PlugIOManagerLoad: can't load trajectory into object '%s'\n", obj->Name ENDFB(G);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer3/PlugIOManager.cpp:17:
/usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 58 and 313 bytes into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/Seeker.cpp -o build/temp.linux-i686-2.7/layer3/Seeker.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
layer3/Seeker.cpp: In function 'void SeekerUpdate(PyMOLGlobals*)':
layer3/Seeker.cpp:1207:23: warning: comparison of integer expressions of different signedness: 'ov_size' {aka 'unsigned int'} and 'int' [-Wsign-compare]
if(row->len < min_pad) {
~~~~~~~~~^~~~~~~~~
layer3/Seeker.cpp:1243:23: warning: comparison of integer expressions of different signedness: 'ov_size' {aka 'unsigned int'} and 'int' [-Wsign-compare]
if(row->len < min_pad) {
~~~~~~~~~^~~~~~~~~
layer3/Seeker.cpp: In lambda function:
layer3/Seeker.cpp:1305:30: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
for(int i = 0; i < str_size; i++){
~~^~~~~~~~~~
layer3/Seeker.cpp: In function 'void SeekerUpdate(PyMOLGlobals*)':
layer3/Seeker.cpp:1989:27: warning: comparison of integer expressions of different signedness: 'ov_size' {aka 'unsigned int'} and 'int' [-Wsign-compare]
if(row->ext_len < stop)
~~~~~~~~~~~~~^~~~~~
layer3/Seeker.cpp: In function 'void SeekerSelectionToggleRange(PyMOLGlobals*, CSeqRow*, int, int, int, int, int)':
layer3/Seeker.cpp:148:27: warning: '%s' directive writing up to 1023 bytes into a region of size between 752 and 1009 [-Wformat-overflow=]
sprintf(buf2, "%scmd.select(\"%s\",\"%s\",enable=1)\n", prefix, selName,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
buf1);
~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer3/Seeker.cpp:20:
/usr/include/bits/stdio2.h:33:34: note: '__builtin___sprintf_chk' output between 28 and 1308 bytes into a destination of size 1024
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Seeker.cpp: In function 'void SeekerSelectionToggle(PyMOLGlobals*, CSeqRow*, int, int, int, int)':
layer3/Seeker.cpp:232:27: warning: '%s' directive writing up to 1023 bytes into a region of size between 752 and 1009 [-Wformat-overflow=]
sprintf(buf2, "%scmd.select(\"%s\",\"%s\",enable=1)\n", prefix, selName,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
buf1);
~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer3/Seeker.cpp:20:
/usr/include/bits/stdio2.h:33:34: note: '__builtin___sprintf_chk' output between 28 and 1308 bytes into a destination of size 1024
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/Selector.cpp -o build/temp.linux-i686-2.7/layer3/Selector.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
layer3/Selector.cpp: In member function 'virtual bool SelectorAtomIterator::next()':
layer3/Selector.cpp:210:13: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
if ((++a) >= selector->NAtom)
~~~~~~^~~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function 'int SelectorClassifyAtoms(PyMOLGlobals*, int, int, ObjectMolecule*)':
layer3/Selector.cpp:1224:11: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
while(a < I->NAtom) {
~~^~~~~~~~~~
layer3/Selector.cpp:1248:16: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
while(a1 < I->NAtom) {
~~~^~~~~~~~~~
layer3/Selector.cpp: In function 'void SelectorComputeFragPos(PyMOLGlobals*, ObjectMolecule*, int, int, char*, float**)':
layer3/Selector.cpp:1518:20: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(at = 0; at < I->NAtom; at++) {
~~~^~~~~~~~~~
layer3/Selector.cpp: In function 'int SelectorAssignSS(PyMOLGlobals*, int, int, int, int, ObjectMolecule*, int)':
layer3/Selector.cpp:1962:31: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = cNDummyAtoms; a < I->NAtom; a++) {
~~^~~~~~~~~~
layer3/Selector.cpp:1990:22: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
while(a1 < I->NAtom) {
~~~^~~~~~~~~~
layer3/Selector.cpp:2187:33: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = cNDummyAtoms; a < I->NAtom; a++) {
~~^~~~~~~~~~
layer3/Selector.cpp:2227:22: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(aa = 0; aa < I->NAtom; aa++) { /* first, clear flags */
~~~^~~~~~~~~~
layer3/Selector.cpp: In function 'PyObject* SelectorColorectionGet(PyMOLGlobals*, const char*)':
layer3/Selector.cpp:3018:18: warning: comparison of integer expressions of different signedness: 'ov_size' {aka 'unsigned int'} and 'int' [-Wsign-compare]
for(b = 0; b < n_used; b++) {
~~^~~~~~~~
layer3/Selector.cpp:3034:16: warning: comparison of integer expressions of different signedness: 'ov_size' {aka 'unsigned int'} and 'int' [-Wsign-compare]
for(a = 0; a < n_used; a++) {
~~^~~~~~~~
layer3/Selector.cpp:3053:18: warning: comparison of integer expressions of different signedness: 'ov_size' {aka 'unsigned int'} and 'int' [-Wsign-compare]
for(b = 0; b < n_used; b++) {
~~^~~~~~~~
layer3/Selector.cpp: In function 'int SelectorColorectionApply(PyMOLGlobals*, PyObject*, const char*)':
layer3/Selector.cpp:3113:18: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(b = 0; b < n_used; b++) { /* update selection indices */
~~^~~~~~~~
layer3/Selector.cpp:3118:29: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = cNDummyAtoms; a < I->NAtom; a++) {
~~^~~~~~~~~~
layer3/Selector.cpp:3122:20: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(b = 0; b < n_used; b++) {
~~^~~~~~~~
layer3/Selector.cpp: In function 'PyObject* SelectorAsPyList(PyMOLGlobals*, int)':
layer3/Selector.cpp:3305:27: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = cNDummyAtoms; a < I->NAtom; a++) {
~~^~~~~~~~~~
layer3/Selector.cpp: In function 'int SelectorCountStates(PyMOLGlobals*, int)':
layer3/Selector.cpp:3828:29: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = cNDummyAtoms; a < I->NAtom; a++) {
~~^~~~~~~~~~
layer3/Selector.cpp: In function 'int SelectorCheckIntersection(PyMOLGlobals*, int, int)':
layer3/Selector.cpp:3857:29: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = cNDummyAtoms; a < I->NAtom; a++) {
~~^~~~~~~~~~
layer3/Selector.cpp: In function 'int SelectorCountAtoms(PyMOLGlobals*, int, int)':
layer3/Selector.cpp:3880:29: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = cNDummyAtoms; a < I->NAtom; a++) {
~~^~~~~~~~~~
layer3/Selector.cpp: In function 'void SelectorSetDeleteFlagOnSelectionInObject(PyMOLGlobals*, int, ObjectMolecule*, signed char)':
layer3/Selector.cpp:3900:29: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = cNDummyAtoms; a < I->NAtom; a++) {
~~^~~~~~~~~~
layer3/Selector.cpp: In function 'int* SelectorGetIndexVLAImpl(PyMOLGlobals*, CSelector*, int)':
layer3/Selector.cpp:3988:27: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = cNDummyAtoms; a < I->NAtom; a++) {
~~^~~~~~~~~~
layer3/Selector.cpp: In function 'void SelectorLogSele(PyMOLGlobals*, const char*)':
layer3/Selector.cpp:4048:31: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = cNDummyAtoms; a < I->NAtom; a++) {
~~^~~~~~~~~~
layer3/Selector.cpp: In function 'ObjectMolecule* SelectorGetSingleObjectMolecule(PyMOLGlobals*, int)':
layer3/Selector.cpp:4231:16: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = 0; a < I->NAtom; a++) {
~~^~~~~~~~~~
layer3/Selector.cpp: In function 'ObjectMolecule* SelectorGetFirstObjectMolecule(PyMOLGlobals*, int)':
layer3/Selector.cpp:4261:16: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = 0; a < I->NAtom; a++) {
~~^~~~~~~~~~
layer3/Selector.cpp: In function 'ObjectMolecule** SelectorGetObjectMoleculeVLA(PyMOLGlobals*, int)':
layer3/Selector.cpp:4285:27: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = cNDummyAtoms; a < I->NAtom; a++) {
~~^~~~~~~~~~
layer3/Selector.cpp: In function 'int SelectorSubdivide(PyMOLGlobals*, const char*, int, int, int, int, const char*, const char*, int*)':
layer3/Selector.cpp:4731:20: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = 0; a < I->NAtom; a++)
~~^~~~~~~~~~
layer3/Selector.cpp: In function 'int SelectorGetSeleNCSet(PyMOLGlobals*, int)':
layer3/Selector.cpp:5097:29: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = cNDummyAtoms; a < I->NAtom; a++) {
~~^~~~~~~~~~
layer3/Selector.cpp: In function 'int SelectorGetArrayNCSet(PyMOLGlobals*, int*, int)':
layer3/Selector.cpp:5125:20: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = start; a < I->NAtom; a++) {
~~^~~~~~~~~~
layer3/Selector.cpp: In function 'int SelectorGetInterstateVLA(PyMOLGlobals*, int, int, int, int, float, int**)':
layer3/Selector.cpp:5228:16: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = 0; a < I->NAtom; a++) {
~~^~~~~~~~~~
layer3/Selector.cpp:5255:31: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = cNDummyAtoms; a < I->NAtom; a++) {
~~^~~~~~~~~~
layer3/Selector.cpp: In function 'int SelectorMapMaskVDW(PyMOLGlobals*, int, ObjectMapState*, float, int)':
layer3/Selector.cpp:5316:16: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = 0; a < I->NAtom; a++) {
~~^~~~~~~~~~
layer3/Selector.cpp: In function 'int SelectorMapGaussian(PyMOLGlobals*, int, ObjectMapState*, float, int, int, int, int, float)':
layer3/Selector.cpp:5683:16: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = 0; a < I->NAtom; a++) {
~~^~~~~~~~~~
layer3/Selector.cpp:5727:16: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = 0; a < I->NAtom; a++) {
~~^~~~~~~~~~
layer3/Selector.cpp: In function 'int SelectorMapCoulomb(PyMOLGlobals*, int, ObjectMapState*, float, int, int, int, float)':
layer3/Selector.cpp:5947:27: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = cNDummyAtoms; a < I->NAtom; a++) {
~~^~~~~~~~~~
layer3/Selector.cpp: In function 'int SelectorCreateObjectMolecule(PyMOLGlobals*, int, const char*, int, int, int, int, int, int, int)':
layer3/Selector.cpp:6666:31: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = cNDummyAtoms; a < I->NAtom; a++) {
~~^~~~~~~~~~
layer3/Selector.cpp:6688:27: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = cNDummyAtoms; a < I->NAtom; a++) {
~~^~~~~~~~~~
layer3/Selector.cpp:6707:28: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = cNDummyModels; a < I->NModel; a++) { /* find bonds wholly contained in the selection */
~~^~~~~~~~~~~
layer3/Selector.cpp:6734:29: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = cNDummyAtoms; a < I->NAtom; a++) {
~~^~~~~~~~~~
layer3/Selector.cpp:6776:29: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = cNDummyAtoms; a < I->NAtom; a++) {
~~^~~~~~~~~~
layer3/Selector.cpp:6805:31: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = cNDummyAtoms; a < I->NAtom; a++) /* any selected atoms in this state? */
~~^~~~~~~~~~
layer3/Selector.cpp: In function 'int SelectorEmbedSelection(PyMOLGlobals*, int*, const char*, ObjectMolecule*, int, int)':
layer3/Selector.cpp:7252:20: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = start; a < I->NAtom; a++) {
~~^~~~~~~~~~
layer3/Selector.cpp: In function 'int* SelectorApplyMultipick(PyMOLGlobals*, Multipick*)':
layer3/Selector.cpp:7344:16: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = 0; a < I->NAtom; a++)
~~^~~~~~~~~~
layer3/Selector.cpp: In function 'int* SelectorSelectFromTagDict(PyMOLGlobals*, OVOneToAny*)':
layer3/Selector.cpp:7373:31: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = cNDummyAtoms; a < I->NAtom; a++) {
~~^~~~~~~~~~
layer3/Selector.cpp: In function 'int SelectorModulate1(PyMOLGlobals*, EvalElem*, int)':
layer3/Selector.cpp:7976:16: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = 0; a < I->NAtom; a++)
~~^~~~~~~~~~
layer3/Selector.cpp:7988:24: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = 0; a < I->NAtom; a++) {
~~^~~~~~~~~~
layer3/Selector.cpp:8010:38: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = 0; ok && a < I->NAtom; a++) {
~~^~~~~~~~~~
layer3/Selector.cpp:8061:33: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = cNDummyAtoms; a < I->NAtom; a++) {
~~^~~~~~~~~~
layer3/Selector.cpp:8090:20: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = 0; a < I->NAtom; a++) {
~~^~~~~~~~~~
layer3/Selector.cpp:8100:24: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = 0; a < I->NAtom; a++) {
~~^~~~~~~~~~
layer3/Selector.cpp:8125:32: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = 0; a < I->NAtom; a++) {
~~^~~~~~~~~~
layer3/Selector.cpp:8173:29: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = cNDummyAtoms; a < I->NAtom; a++)
~~^~~~~~~~~~
layer3/Selector.cpp: In function 'int SelectorSelect0(PyMOLGlobals*, EvalElem*)':
layer3/Selector.cpp:8209:31: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = cNDummyAtoms; a < I->NAtom; a++) {
~~^~~~~~~~~~
layer3/Selector.cpp:8221:31: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = cNDummyAtoms; a < I->NAtom; a++)
~~^~~~~~~~~~
layer3/Selector.cpp:8226:31: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = cNDummyAtoms; a < I->NAtom; a++)
~~^~~~~~~~~~
layer3/Selector.cpp:8233:29: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = cNDummyAtoms; a < I->NAtom; a++)
~~^~~~~~~~~~
layer3/Selector.cpp:8237:29: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = cNDummyAtoms; a < I->NAtom; a++)
~~^~~~~~~~~~
layer3/Selector.cpp:8241:29: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = cNDummyAtoms; a < I->NAtom; a++)
~~^~~~~~~~~~
layer3/Selector.cpp:8245:29: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = cNDummyAtoms; a < I->NAtom; a++)
~~^~~~~~~~~~
layer3/Selector.cpp:8249:29: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = cNDummyAtoms; a < I->NAtom; a++) {
~~^~~~~~~~~~
layer3/Selector.cpp:8258:31: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = cNDummyAtoms; a < I->NAtom; a++) {
~~^~~~~~~~~~
layer3/Selector.cpp:8275:29: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = cNDummyAtoms; a < I->NAtom; a++)
~~^~~~~~~~~~
layer3/Selector.cpp:8280:29: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = cNDummyAtoms; a < I->NAtom; a++)
~~^~~~~~~~~~
layer3/Selector.cpp:8285:29: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = cNDummyAtoms; a < I->NAtom; a++)
~~^~~~~~~~~~
layer3/Selector.cpp:8290:29: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = cNDummyAtoms; a < I->NAtom; a++)
~~^~~~~~~~~~
layer3/Selector.cpp:8295:29: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = cNDummyAtoms; a < I->NAtom; a++)
~~^~~~~~~~~~
layer3/Selector.cpp:8300:29: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = cNDummyAtoms; a < I->NAtom; a++)
~~^~~~~~~~~~
layer3/Selector.cpp:8305:29: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = cNDummyAtoms; a < I->NAtom; a++)
~~^~~~~~~~~~
layer3/Selector.cpp:8309:29: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = cNDummyAtoms; a < I->NAtom; a++)
~~^~~~~~~~~~
layer3/Selector.cpp:8313:29: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = cNDummyAtoms; a < I->NAtom; a++)
~~^~~~~~~~~~
layer3/Selector.cpp:8318:29: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = cNDummyAtoms; a < I->NAtom; a++)
~~^~~~~~~~~~
layer3/Selector.cpp:8323:29: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = cNDummyAtoms; a < I->NAtom; a++)
~~^~~~~~~~~~
layer3/Selector.cpp:8331:29: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = cNDummyAtoms; a < I->NAtom; a++) {
~~^~~~~~~~~~
layer3/Selector.cpp:8357:29: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = cNDummyAtoms; a < I->NAtom; a++) {
~~^~~~~~~~~~
layer3/Selector.cpp:8363:18: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = 0; a < I->NAtom; a++) {
~~^~~~~~~~~~
layer3/Selector.cpp:8372:18: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = 0; a < I->NAtom; a++) {
~~^~~~~~~~~~
layer3/Selector.cpp:8384:31: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = cNDummyAtoms; a < I->NAtom; a++) {
~~^~~~~~~~~~
layer3/Selector.cpp:8405:29: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = cNDummyAtoms; a < I->NAtom; a++) {
~~^~~~~~~~~~
layer3/Selector.cpp: In function 'int SelectorSelect1(PyMOLGlobals*, EvalElem*, int)':
layer3/Selector.cpp:9152:36: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = cNDummyModels; a < I->NModel; a++)
~~^~~~~~~~~~~
layer3/Selector.cpp:9162:27: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
else if(model > I->NModel)
~~~~~~^~~~~~~~~~~
layer3/Selector.cpp: In function 'int SelectorSelect2(PyMOLGlobals*, EvalElem*, int)':
layer3/Selector.cpp:9246:31: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = cNDummyAtoms; a < I->NAtom; a++)
~~^~~~~~~~~~
layer3/Selector.cpp:9250:33: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = cNDummyAtoms; a < I->NAtom; a++) {
~~^~~~~~~~~~
layer3/Selector.cpp:9298:37: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = cNDummyAtoms; a < I->NAtom; a++) {
~~^~~~~~~~~~
layer3/Selector.cpp:9309:37: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = cNDummyAtoms; a < I->NAtom; a++) {
~~^~~~~~~~~~
layer3/Selector.cpp:9320:37: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = cNDummyAtoms; a < I->NAtom; a++) {
~~^~~~~~~~~~
layer3/Selector.cpp:9331:37: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = cNDummyAtoms; a < I->NAtom; a++) {
~~^~~~~~~~~~
layer3/Selector.cpp:9346:37: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = cNDummyAtoms; a < I->NAtom; a++) {
~~^~~~~~~~~~
layer3/Selector.cpp:9357:37: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = cNDummyAtoms; a < I->NAtom; a++) {
~~^~~~~~~~~~
layer3/Selector.cpp:9368:37: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = cNDummyAtoms; a < I->NAtom; a++) {
~~^~~~~~~~~~
layer3/Selector.cpp:9379:37: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = cNDummyAtoms; a < I->NAtom; a++) {
~~^~~~~~~~~~
layer3/Selector.cpp:9394:37: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = cNDummyAtoms; a < I->NAtom; a++) {
~~^~~~~~~~~~
layer3/Selector.cpp:9405:37: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = cNDummyAtoms; a < I->NAtom; a++) {
~~^~~~~~~~~~
layer3/Selector.cpp:9416:37: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = cNDummyAtoms; a < I->NAtom; a++) {
~~^~~~~~~~~~
layer3/Selector.cpp:9427:37: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = cNDummyAtoms; a < I->NAtom; a++) {
~~^~~~~~~~~~
layer3/Selector.cpp: In member function 'void SelectorRingFinder::recursion(int, int)':
layer3/Selector.cpp:9483:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'unsigned int'} [-Wsign-compare]
} else if (depth < indices.size() - 1) {
~~~~~~^~~~~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function 'int SelectorLogic1(PyMOLGlobals*, EvalElem*, int)':
layer3/Selector.cpp:9954:24: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = 0; a < I->NAtom; a++) {
~~^~~~~~~~~~
layer3/Selector.cpp:9986:32: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = 0; a < I->NAtom; a++) {
~~^~~~~~~~~~
layer3/Selector.cpp: In function 'int SelectorOperator22(PyMOLGlobals*, EvalElem*, int)':
layer3/Selector.cpp:10254:20: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = 0; a < I->NAtom; a++) {
~~^~~~~~~~~~
layer3/Selector.cpp:10262:24: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = 0; a < I->NAtom; a++) {
~~^~~~~~~~~~
layer3/Selector.cpp:10284:32: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = 0; a < I->NAtom; a++) {
~~^~~~~~~~~~
layer3/Selector.cpp:10323:22: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = 0; a < I->NAtom; a++) {
~~^~~~~~~~~~
layer3/Selector.cpp:10328:31: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = cNDummyAtoms; a < I->NAtom; a++)
~~^~~~~~~~~~
layer3/Selector.cpp: In function 'char (* SelectorParse(PyMOLGlobals*, const char*))[1024]':
layer3/Selector.cpp:10902:25: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
if((q - q_base) >= sizeof(SelectorWordType)) {
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function 'DistSet* SelectorGetDistSet(PyMOLGlobals*, DistSet*, int, int, int, int, int, float, float*)':
layer3/Selector.cpp:11190:29: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = cNDummyAtoms; a < I->NAtom; a++) {
~~^~~~~~~~~~
layer3/Selector.cpp: In function 'DistSet* SelectorGetAngleSet(PyMOLGlobals*, DistSet*, int, int, int, int, int, int, int, float*, int*)':
layer3/Selector.cpp:11465:29: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = cNDummyAtoms; a < I->NAtom; a++) {
~~^~~~~~~~~~
layer3/Selector.cpp:11478:29: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = cNDummyAtoms; a < I->NAtom; a++) {
~~^~~~~~~~~~
layer3/Selector.cpp:11506:31: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = cNDummyAtoms; a < I->NAtom; a++) {
~~^~~~~~~~~~
layer3/Selector.cpp: In function 'DistSet* SelectorGetDihedralSet(PyMOLGlobals*, DistSet*, int, int, int, int, int, int, int, int, int, float*, int*)':
layer3/Selector.cpp:11717:29: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = cNDummyAtoms; a < I->NAtom; a++) {
~~^~~~~~~~~~
layer3/Selector.cpp:11769:29: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = cNDummyAtoms; a < I->NAtom; a++) {
~~^~~~~~~~~~
layer3/Selector.cpp:11815:33: warning: comparison of integer expressions of different signedness: 'int' and 'ov_size' {aka 'unsigned int'} [-Wsign-compare]
for(a = cNDummyAtoms; a < I->NAtom; a++) {
~~^~~~~~~~~~
layer3/Selector.cpp: In function 'int SelectorSelect1(PyMOLGlobals*, EvalElem*, int)':
layer3/Selector.cpp:9191:13: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 223 [-Wformat-truncation=]
" Selector-Error: invalid model \"%s\".\n", base[1].text ENDFB(G);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer3/Selector.cpp:19:
/usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 36 and 1059 bytes into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/string.h:508,
from /usr/include/python2.7/Python.h:38,
from layer0/os_python.h:34,
from layer3/Selector.cpp:19:
In function 'char* strcpy(char*, const char*)',
inlined from 'void SelectorDeleteSeleAtOffset(PyMOLGlobals*, int)' at layer3/Selector.cpp:1812:13:
/usr/include/bits/string_fortified.h:90:33: warning: 'char* __builtin_strcpy(char*, const char*)' accessing 1 byte at offsets [0, -1] and [0, -1] may overlap 1 byte at offset -2147483648 [-Wrestrict]
return __builtin___strcpy_chk (__dest, __src, __bos (__dest));
~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function 'int SelectorAssignSS(PyMOLGlobals*, int, int, int, int, ObjectMolecule*, int)':
layer3/Selector.cpp:2032:21: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 207 [-Wformat-truncation=]
" AssignSS-Warning: Ignoring incomplete residue /%s/%s/%s/%d%c ...\n",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer3/Selector.cpp:19:
/usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output 59 or more bytes (assuming 314) into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function 'int* SelectorEvaluate(PyMOLGlobals*, char (*)[1024], int, int)':
layer3/Selector.cpp:10824:6: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 255 [-Wformat-truncation=]
"%s", line ENDFB(G);
^~~~ ~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer3/Selector.cpp:19:
/usr/include/bits/stdio2.h:64:35: note: '__builtin_snprintf' output between 1 and 1024 bytes into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Selector.cpp:10829:4: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 255 [-Wformat-truncation=]
"%s\n", line ENDFB(G);
^~~~~~ ~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer3/Selector.cpp:19:
/usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 2 and 1025 bytes into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function 'int _SelectorCreate(PyMOLGlobals*, const char*, const char*, ObjectMolecule**, int, Multipick*, CSeqRow*, int, int**, int*, int, OVOneToAny*, int, int, int)':
layer3/Selector.cpp:7461:11: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 233 [-Wformat-truncation=]
" Selector: selection \"%s\" defined with %d atoms.\n", name, c ENDFB(G);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer3/Selector.cpp:19:
/usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 47 and 1080 bytes into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function 'int _SelectorCreate(PyMOLGlobals*, const char*, const char*, ObjectMolecule**, int, Multipick*, CSeqRow*, int, int**, int*, int, OVOneToAny*, int, int, int)':
layer3/Selector.cpp:7461:11: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 233 [-Wformat-truncation=]
" Selector: selection \"%s\" defined with %d atoms.\n", name, c ENDFB(G);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer3/Selector.cpp:19:
/usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 47 and 1080 bytes into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer4/Cmd.cpp -o build/temp.linux-i686-2.7/layer4/Cmd.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
layer4/Cmd.cpp: In function 'PyObject* CmdSetRawAlignment(PyObject*, PyObject*)':
layer4/Cmd.cpp:680:23: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare]
for(size_t c = 0; c < n_cols; ++c) {
~~^~~~~~~~
layer4/Cmd.cpp:690:25: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare]
for(size_t i = 0; i < n_idx; ++i) {
~~^~~~~~~
layer4/Cmd.cpp: In function 'PyObject* CmdPushUndo(PyObject*, PyObject*)':
layer4/Cmd.cpp:2782:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
if(ok)
^~
layer4/Cmd.cpp:2784:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
if(s0[0])
^~
layer4/Cmd.cpp: In function 'PyObject* Cmd_New(PyObject*, PyObject*)':
layer4/Cmd.cpp:4388:11: warning: variable 'ok' set but not used [-Wunused-but-set-variable]
int ok = true;
^~
layer4/Cmd.cpp: In function 'PyObject* CmdLoadTraj(PyObject*, PyObject*)':
layer4/Cmd.cpp:7459:9: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 255 [-Wformat-truncation=]
"%s", buf ENDFB(G);
^~~~ ~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer4/Cmd.cpp:45:
/usr/include/bits/stdio2.h:64:35: note: '__builtin_snprintf' output between 1 and 1024 bytes into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer4/Cmd.cpp: In function 'PyObject* CmdLoadObject(PyObject*, PyObject*)':
layer4/Cmd.cpp:7221:9: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 255 [-Wformat-truncation=]
"%s", buf ENDFB(G);
^~~~ ~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer4/Cmd.cpp:45:
/usr/include/bits/stdio2.h:64:35: note: '__builtin_snprintf' output between 1 and 1024 bytes into a destination of size 255
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer4/Cmd.cpp: In function 'PyObject* CmdCreate(PyObject*, PyObject*)':
layer4/Cmd.cpp:5091:31: warning: 'copy_properties' may be used uninitialized in this function [-Wmaybe-uninitialized]
ok = ExecutiveSeleToObject(G, str1, str2,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
source, target, discrete, zoom, quiet, singletons, copy_properties);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer4/Export.cpp -o build/temp.linux-i686-2.7/layer4/Export.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer4/Menu.cpp -o build/temp.linux-i686-2.7/layer4/Menu.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer4/PopUp.cpp -o build/temp.linux-i686-2.7/layer4/PopUp.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
In file included from layer0/OOMac.h:22,
from layer4/PopUp.cpp:23:
layer4/PopUp.cpp: In function 'void PopUpFree(Block*)':
layer4/PopUp.cpp:390:11: warning: deleting object of polymorphic class type 'CPopUp' which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
DeleteP(I);
^
layer0/MemoryDebug.h:54:39: note: in definition of macro 'DeleteP'
#define DeleteP(ptr) {if(ptr) {delete ptr;ptr=NULL;}}
^~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer5/PyMOL.cpp -o build/temp.linux-i686-2.7/layer5/PyMOL.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
layer5/PyMOL.cpp: In function 'PyMOLreturn_status Loader(CPyMOL*, const char*, const char*, int, const char*, const char*, int, int, int, int, int, int)':
layer5/PyMOL.cpp:1612:27: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
if((stop - start) >= sizeof(WordType))
~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
layer5/PyMOL.cpp: In function 'char* PyMOL_GetClickString(CPyMOL*, int)':
layer5/PyMOL.cpp:2835:19: warning: '%s' directive writing up to 255 bytes into a region of size between 137 and 914 [-Wformat-overflow=]
"type=object:molecule\nobject=%s\nindex=%d\nrank=%d\nid=%d\nsegi=%s\nchain=%s\nresn=%s\nresi=%d%s\nname=%s\nalt=%s\nclick=%s\nmod_keys=%s\nx=%d\ny=%d\n%s",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer5/PyMOL.cpp:2845:70:
ai->alt, butstr, modstr, I->ClickedX, I->ClickedY, posstr);
~~~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/python2.7/Python.h:33,
from layer0/os_python.h:34,
from layer5/PyMOL.cpp:17:
/usr/include/bits/stdio2.h:33:34: note: '__builtin___sprintf_chk' output 112 or more bytes (assuming 1144) into a destination of size 1025
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer5/TestPyMOL.cpp -o build/temp.linux-i686-2.7/layer5/TestPyMOL.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer5/main.cpp -o build/temp.linux-i686-2.7/layer5/main.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c modules/cealign/src/ccealignmodule.cpp -o build/temp.linux-i686-2.7/modules/cealign/src/ccealignmodule.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
In file included from modules/cealign/src/tnt/tnt.h:49,
from modules/cealign/src/ccealignmodule.cpp:38:
modules/cealign/src/tnt/tnt_array2d_utils.h: In function 'std::istream& TNT::operator>>(std::istream&, TNT::Array2D<T>&)':
modules/cealign/src/tnt/tnt_array2d_utils.h:62:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
for (int i=0; i<M; i++)
^~~
modules/cealign/src/tnt/tnt_array2d_utils.h:68:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
A = B;
^
In file included from modules/cealign/src/tnt/tnt.h:50,
from modules/cealign/src/ccealignmodule.cpp:38:
modules/cealign/src/tnt/tnt_array3d_utils.h: In function 'std::istream& TNT::operator>>(std::istream&, TNT::Array3D<T>&)':
modules/cealign/src/tnt/tnt_array3d_utils.h:47:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
for (int i=0; i<M; i++)
^~~
modules/cealign/src/tnt/tnt_array3d_utils.h:52:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
A = B;
^
In file included from modules/cealign/src/tnt/tnt.h:56,
from modules/cealign/src/ccealignmodule.cpp:38:
modules/cealign/src/tnt/tnt_fortran_array2d_utils.h: In function 'std::istream& TNT::operator>>(std::istream&, TNT::Fortran_Array2D<T>&)':
modules/cealign/src/tnt/tnt_fortran_array2d_utils.h:61:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
for (int i=1; i<=M; i++)
^~~
modules/cealign/src/tnt/tnt_fortran_array2d_utils.h:67:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
A = B;
^
In file included from modules/cealign/src/tnt/tnt.h:57,
from modules/cealign/src/ccealignmodule.cpp:38:
modules/cealign/src/tnt/tnt_fortran_array3d_utils.h: In function 'std::istream& TNT::operator>>(std::istream&, TNT::Fortran_Array3D<T>&)':
modules/cealign/src/tnt/tnt_fortran_array3d_utils.h:65:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
for (int i=1; i<=M; i++)
^~~
modules/cealign/src/tnt/tnt_fortran_array3d_utils.h:70:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
A = B;
^
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVContext.cpp -o build/temp.linux-i686-2.7/ov/src/OVContext.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
ov/src/OVContext.cpp: In function 'void OVContext_Del(OVContext*)':
ov/src/OVContext.cpp:21:13: warning: variable 'heap' set but not used [-Wunused-but-set-variable]
OVHeap *heap = I->heap;
^~~~
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVHeap.cpp -o build/temp.linux-i686-2.7/ov/src/OVHeap.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVHeapArray.cpp -o build/temp.linux-i686-2.7/ov/src/OVHeapArray.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVLexicon.cpp -o build/temp.linux-i686-2.7/ov/src/OVLexicon.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVOneToAny.cpp -o build/temp.linux-i686-2.7/ov/src/OVOneToAny.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVOneToOne.cpp -o build/temp.linux-i686-2.7/ov/src/OVOneToOne.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVRandom.cpp -o build/temp.linux-i686-2.7/ov/src/OVRandom.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/ov_utility.cpp -o build/temp.linux-i686-2.7/ov/src/ov_utility.o -Wno-narrowing -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
i586-alt-linux-g++ -pthread -shared -L/usr/lib/nsl -lnsl -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic build/temp.linux-i686-2.7/build/generated/ShaderText.o build/temp.linux-i686-2.7/contrib/mmtf-c/mmtf_parser.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/hash.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/inthash.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/offplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o build/temp.linux-i686-2.7/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o build/temp.linux-i686-2.7/layer0/Block.o build/temp.linux-i686-2.7/layer0/Crystal.o build/temp.linux-i686-2.7/layer0/Debug.o build/temp.linux-i686-2.7/layer0/Deferred.o build/temp.linux-i686-2.7/layer0/Err.o build/temp.linux-i686-2.7/layer0/Feedback.o build/temp.linux-i686-2.7/layer0/Field.o build/temp.linux-i686-2.7/layer0/File.o build/temp.linux-i686-2.7/layer0/GenericBuffer.o build/temp.linux-i686-2.7/layer0/GraphicsUtil.o build/temp.linux-i686-2.7/layer0/Isosurf.o build/temp.linux-i686-2.7/layer0/Map.o build/temp.linux-i686-2.7/layer0/Match.o build/temp.linux-i686-2.7/layer0/Matrix.o build/temp.linux-i686-2.7/layer0/MemoryDebug.o build/temp.linux-i686-2.7/layer0/MyPNG.o build/temp.linux-i686-2.7/layer0/Parse.o build/temp.linux-i686-2.7/layer0/Pixmap.o build/temp.linux-i686-2.7/layer0/ShaderMgr.o build/temp.linux-i686-2.7/layer0/ShaderPrg.o build/temp.linux-i686-2.7/layer0/Sphere.o build/temp.linux-i686-2.7/layer0/Tetsurf.o build/temp.linux-i686-2.7/layer0/Texture.o build/temp.linux-i686-2.7/layer0/Tracker.o build/temp.linux-i686-2.7/layer0/Triangle.o build/temp.linux-i686-2.7/layer0/Util.o build/temp.linux-i686-2.7/layer0/Util2.o build/temp.linux-i686-2.7/layer0/Vector.o build/temp.linux-i686-2.7/layer0/Word.o build/temp.linux-i686-2.7/layer0/os_gl.o build/temp.linux-i686-2.7/layer1/Basis.o build/temp.linux-i686-2.7/layer1/ButMode.o build/temp.linux-i686-2.7/layer1/CGO.o build/temp.linux-i686-2.7/layer1/COLLADA.o build/temp.linux-i686-2.7/layer1/Character.o build/temp.linux-i686-2.7/layer1/Color.o build/temp.linux-i686-2.7/layer1/Control.o build/temp.linux-i686-2.7/layer1/Extrude.o build/temp.linux-i686-2.7/layer1/Font.o build/temp.linux-i686-2.7/layer1/FontGLUT.o build/temp.linux-i686-2.7/layer1/FontGLUT8x13.o build/temp.linux-i686-2.7/layer1/FontGLUT9x15.o build/temp.linux-i686-2.7/layer1/FontGLUTHel10.o build/temp.linux-i686-2.7/layer1/FontGLUTHel12.o build/temp.linux-i686-2.7/layer1/FontGLUTHel18.o build/temp.linux-i686-2.7/layer1/FontType.o build/temp.linux-i686-2.7/layer1/Movie.o build/temp.linux-i686-2.7/layer1/Ortho.o build/temp.linux-i686-2.7/layer1/P.o build/temp.linux-i686-2.7/layer1/PConv.o build/temp.linux-i686-2.7/layer1/Pop.o build/temp.linux-i686-2.7/layer1/PyMOLObject.o build/temp.linux-i686-2.7/layer1/Ray.o build/temp.linux-i686-2.7/layer1/Rep.o build/temp.linux-i686-2.7/layer1/Scene.o build/temp.linux-i686-2.7/layer1/ScenePicking.o build/temp.linux-i686-2.7/layer1/SceneRay.o build/temp.linux-i686-2.7/layer1/SceneRender.o build/temp.linux-i686-2.7/layer1/ScrollBar.o build/temp.linux-i686-2.7/layer1/Seq.o build/temp.linux-i686-2.7/layer1/Setting.o build/temp.linux-i686-2.7/layer1/Shaker.o build/temp.linux-i686-2.7/layer1/Symmetry.o build/temp.linux-i686-2.7/layer1/Text.o build/temp.linux-i686-2.7/layer1/TypeFace.o build/temp.linux-i686-2.7/layer1/View.o build/temp.linux-i686-2.7/layer1/Wizard.o build/temp.linux-i686-2.7/layer2/AssemblyHelpers.o build/temp.linux-i686-2.7/layer2/AtomInfo.o build/temp.linux-i686-2.7/layer2/AtomInfoHistory.o build/temp.linux-i686-2.7/layer2/BondTypeHistory.o build/temp.linux-i686-2.7/layer2/CifFile.o build/temp.linux-i686-2.7/layer2/CifMoleculeReader.o build/temp.linux-i686-2.7/layer2/CoordSet.o build/temp.linux-i686-2.7/layer2/DistSet.o build/temp.linux-i686-2.7/layer2/GadgetSet.o build/temp.linux-i686-2.7/layer2/HydrogenAdder.o build/temp.linux-i686-2.7/layer2/MmodTyping.o build/temp.linux-i686-2.7/layer2/MmtfMoleculeReader.o build/temp.linux-i686-2.7/layer2/Mol2Typing.o build/temp.linux-i686-2.7/layer2/MolV3000.o build/temp.linux-i686-2.7/layer2/ObjectAlignment.o build/temp.linux-i686-2.7/layer2/ObjectCGO.o build/temp.linux-i686-2.7/layer2/ObjectCallback.o build/temp.linux-i686-2.7/layer2/ObjectDist.o build/temp.linux-i686-2.7/layer2/ObjectGadget.o build/temp.linux-i686-2.7/layer2/ObjectGadgetRamp.o build/temp.linux-i686-2.7/layer2/ObjectGroup.o build/temp.linux-i686-2.7/layer2/ObjectMap.o build/temp.linux-i686-2.7/layer2/ObjectMesh.o build/temp.linux-i686-2.7/layer2/ObjectMolecule.o build/temp.linux-i686-2.7/layer2/ObjectMolecule2.o build/temp.linux-i686-2.7/layer2/ObjectSlice.o build/temp.linux-i686-2.7/layer2/ObjectSurface.o build/temp.linux-i686-2.7/layer2/ObjectVolume.o build/temp.linux-i686-2.7/layer2/RepAngle.o build/temp.linux-i686-2.7/layer2/RepCartoon.o build/temp.linux-i686-2.7/layer2/RepCylBond.o build/temp.linux-i686-2.7/layer2/RepDihedral.o build/temp.linux-i686-2.7/layer2/RepDistDash.o build/temp.linux-i686-2.7/layer2/RepDistLabel.o build/temp.linux-i686-2.7/layer2/RepDot.o build/temp.linux-i686-2.7/layer2/RepEllipsoid.o build/temp.linux-i686-2.7/layer2/RepLabel.o build/temp.linux-i686-2.7/layer2/RepMesh.o build/temp.linux-i686-2.7/layer2/RepNonbonded.o build/temp.linux-i686-2.7/layer2/RepNonbondedSphere.o build/temp.linux-i686-2.7/layer2/RepRibbon.o build/temp.linux-i686-2.7/layer2/RepSphere.o build/temp.linux-i686-2.7/layer2/RepSphereGenerate.o build/temp.linux-i686-2.7/layer2/RepSphereImmediate.o build/temp.linux-i686-2.7/layer2/RepSurface.o build/temp.linux-i686-2.7/layer2/RepWireBond.o build/temp.linux-i686-2.7/layer2/Sculpt.o build/temp.linux-i686-2.7/layer2/SculptCache.o build/temp.linux-i686-2.7/layer2/SideChainHelper.o build/temp.linux-i686-2.7/layer2/VFont.o build/temp.linux-i686-2.7/layer3/AtomIterators.o build/temp.linux-i686-2.7/layer3/CifDataValueFormatter.o build/temp.linux-i686-2.7/layer3/Editor.o build/temp.linux-i686-2.7/layer3/Executive.o build/temp.linux-i686-2.7/layer3/MaeExportHelpers.o build/temp.linux-i686-2.7/layer3/MoleculeExporter.o build/temp.linux-i686-2.7/layer3/MovieScene.o build/temp.linux-i686-2.7/layer3/PlugIOManager.o build/temp.linux-i686-2.7/layer3/Seeker.o build/temp.linux-i686-2.7/layer3/Selector.o build/temp.linux-i686-2.7/layer4/Cmd.o build/temp.linux-i686-2.7/layer4/Export.o build/temp.linux-i686-2.7/layer4/Menu.o build/temp.linux-i686-2.7/layer4/PopUp.o build/temp.linux-i686-2.7/layer5/PyMOL.o build/temp.linux-i686-2.7/layer5/TestPyMOL.o build/temp.linux-i686-2.7/layer5/main.o build/temp.linux-i686-2.7/modules/cealign/src/ccealignmodule.o build/temp.linux-i686-2.7/ov/src/OVContext.o build/temp.linux-i686-2.7/ov/src/OVHeap.o build/temp.linux-i686-2.7/ov/src/OVHeapArray.o build/temp.linux-i686-2.7/ov/src/OVLexicon.o build/temp.linux-i686-2.7/ov/src/OVOneToAny.o build/temp.linux-i686-2.7/ov/src/OVOneToOne.o build/temp.linux-i686-2.7/ov/src/OVRandom.o build/temp.linux-i686-2.7/ov/src/ov_utility.o -lpng -lfreetype -lxml2 -lGL -lGLEW -lpython2.7 -o build/lib.linux-i686-2.7/pymol/_cmd.so
building 'chempy.champ._champ' extension
creating build/temp.linux-i686-2.7/contrib/champ
i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -fwrapv -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/champ.c -o build/temp.linux-i686-2.7/contrib/champ/champ.o
i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -fwrapv -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/champ_module.c -o build/temp.linux-i686-2.7/contrib/champ/champ_module.o
i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -fwrapv -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/chiral.c -o build/temp.linux-i686-2.7/contrib/champ/chiral.o
i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -fwrapv -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/err2.c -o build/temp.linux-i686-2.7/contrib/champ/err2.o
i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -fwrapv -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/feedback2.c -o build/temp.linux-i686-2.7/contrib/champ/feedback2.o
i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -fwrapv -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/list.c -o build/temp.linux-i686-2.7/contrib/champ/list.o
i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -fwrapv -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/os_memory.c -o build/temp.linux-i686-2.7/contrib/champ/os_memory.o
i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -fwrapv -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/sort.c -o build/temp.linux-i686-2.7/contrib/champ/sort.o
i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -fwrapv -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/strblock.c -o build/temp.linux-i686-2.7/contrib/champ/strblock.o
i586-alt-linux-gcc -pthread -DNDEBUG -pipe -frecord-gcc-switches -Wall -g -O3 -march=i586 -mtune=generic -fwrapv -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/vla.c -o build/temp.linux-i686-2.7/contrib/champ/vla.o
i586-alt-linux-gcc -pthread -shared -L/usr/lib/nsl -lnsl -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic build/temp.linux-i686-2.7/contrib/champ/champ.o build/temp.linux-i686-2.7/contrib/champ/champ_module.o build/temp.linux-i686-2.7/contrib/champ/chiral.o build/temp.linux-i686-2.7/contrib/champ/err2.o build/temp.linux-i686-2.7/contrib/champ/feedback2.o build/temp.linux-i686-2.7/contrib/champ/list.o build/temp.linux-i686-2.7/contrib/champ/os_memory.o build/temp.linux-i686-2.7/contrib/champ/sort.o build/temp.linux-i686-2.7/contrib/champ/strblock.o build/temp.linux-i686-2.7/contrib/champ/vla.o -lpython2.7 -o build/lib.linux-i686-2.7/chempy/champ/_champ.so
+ exit 0
Executing(%install): /bin/sh -e /usr/src/tmp/rpm-tmp.87608
+ umask 022
+ /bin/mkdir -p /usr/src/RPM/BUILD
+ cd /usr/src/RPM/BUILD
+ /bin/chmod -Rf u+rwX -- /usr/src/tmp/pymol-buildroot
+ :
+ /bin/rm -rf -- /usr/src/tmp/pymol-buildroot
+ cd pymol-2.3.0
+ CFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic'
+ export CFLAGS
+ CXXFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic'
+ export CXXFLAGS
+ FFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic'
+ export FFLAGS
+ /usr/bin/python2.7 setup.py install --skip-build --root=/usr/src/tmp/pymol-buildroot --force
running install
running install_lib
creating /usr/src/tmp/pymol-buildroot
creating /usr/src/tmp/pymol-buildroot/usr
creating /usr/src/tmp/pymol-buildroot/usr/lib
creating /usr/src/tmp/pymol-buildroot/usr/lib/python2.7
creating /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages
creating /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol2
copying build/lib.linux-i686-2.7/pymol2/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol2
copying build/lib.linux-i686-2.7/pymol2/cmd2.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol2
creating /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt
copying build/lib.linux-i686-2.7/pmg_qt/TextEditor.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt
copying build/lib.linux-i686-2.7/pmg_qt/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt
copying build/lib.linux-i686-2.7/pmg_qt/advanced_settings_gui.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt
copying build/lib.linux-i686-2.7/pmg_qt/builder.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt
copying build/lib.linux-i686-2.7/pmg_qt/file_dialogs.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt
copying build/lib.linux-i686-2.7/pmg_qt/keymapping.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt
copying build/lib.linux-i686-2.7/pmg_qt/mimic_pmg_tk.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt
copying build/lib.linux-i686-2.7/pmg_qt/mimic_tk.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt
copying build/lib.linux-i686-2.7/pmg_qt/properties_dialog.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt
copying build/lib.linux-i686-2.7/pmg_qt/pymol_gl_widget.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt
copying build/lib.linux-i686-2.7/pmg_qt/pymol_qt_gui.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt
copying build/lib.linux-i686-2.7/pmg_qt/volume.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt
creating /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/forms
copying build/lib.linux-i686-2.7/pmg_qt/forms/askpartial.ui -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/forms
copying build/lib.linux-i686-2.7/pmg_qt/forms/colors.ui -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/forms
copying build/lib.linux-i686-2.7/pmg_qt/forms/fetch.ui -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/forms
copying build/lib.linux-i686-2.7/pmg_qt/forms/load_aln.ui -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/forms
copying build/lib.linux-i686-2.7/pmg_qt/forms/load_mae.ui -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/forms
copying build/lib.linux-i686-2.7/pmg_qt/forms/load_map.ui -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/forms
copying build/lib.linux-i686-2.7/pmg_qt/forms/load_mtz.ui -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/forms
copying build/lib.linux-i686-2.7/pmg_qt/forms/load_traj.ui -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/forms
copying build/lib.linux-i686-2.7/pmg_qt/forms/movieexport.ui -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/forms
copying build/lib.linux-i686-2.7/pmg_qt/forms/pluginitem.ui -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/forms
copying build/lib.linux-i686-2.7/pmg_qt/forms/pluginmanager.ui -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/forms
copying build/lib.linux-i686-2.7/pmg_qt/forms/png.ui -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/forms
copying build/lib.linux-i686-2.7/pmg_qt/forms/props.ui -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/forms
copying build/lib.linux-i686-2.7/pmg_qt/forms/render.ui -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/forms
copying build/lib.linux-i686-2.7/pmg_qt/forms/save_molecule.ui -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/forms
copying build/lib.linux-i686-2.7/pmg_qt/forms/save_object.ui -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/forms
copying build/lib.linux-i686-2.7/pmg_qt/forms/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/forms
creating /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/syntax
copying build/lib.linux-i686-2.7/pmg_qt/syntax/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/syntax
copying build/lib.linux-i686-2.7/pmg_qt/syntax/pml.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/syntax
copying build/lib.linux-i686-2.7/pmg_qt/syntax/pmlparser.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/syntax
copying build/lib.linux-i686-2.7/pmg_qt/syntax/python.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/syntax
creating /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk
copying build/lib.linux-i686-2.7/pmg_tk/ColorEditor.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk
copying build/lib.linux-i686-2.7/pmg_tk/Demo.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk
copying build/lib.linux-i686-2.7/pmg_tk/PMGApp.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk
copying build/lib.linux-i686-2.7/pmg_tk/PyMOLMapLoad.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk
copying build/lib.linux-i686-2.7/pmg_tk/SetEditor.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk
copying build/lib.linux-i686-2.7/pmg_tk/Setting.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk
copying build/lib.linux-i686-2.7/pmg_tk/TextEditor.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk
copying build/lib.linux-i686-2.7/pmg_tk/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk
copying build/lib.linux-i686-2.7/pmg_tk/volume.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk
creating /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/startup
copying build/lib.linux-i686-2.7/pmg_tk/startup/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/startup
copying build/lib.linux-i686-2.7/pmg_tk/startup/apbs_tools.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/startup
creating /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins
creating /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/normal
copying build/lib.linux-i686-2.7/pmg_tk/skins/normal/ModalWindow.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/normal
copying build/lib.linux-i686-2.7/pmg_tk/skins/normal/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/normal
copying build/lib.linux-i686-2.7/pmg_tk/skins/normal/builder.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/normal
copying build/lib.linux-i686-2.7/pmg_tk/skins/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins
creating /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/demo
copying build/lib.linux-i686-2.7/pmg_tk/skins/demo/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/demo
creating /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy
copying build/lib.linux-i686-2.7/chempy/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy
copying build/lib.linux-i686-2.7/chempy/arc.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy
copying build/lib.linux-i686-2.7/chempy/bond_amber.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy
copying build/lib.linux-i686-2.7/chempy/bond_mmff.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy
copying build/lib.linux-i686-2.7/chempy/bonds.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy
copying build/lib.linux-i686-2.7/chempy/brick.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy
copying build/lib.linux-i686-2.7/chempy/cc1.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy
copying build/lib.linux-i686-2.7/chempy/cex.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy
copying build/lib.linux-i686-2.7/chempy/charge.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy
copying build/lib.linux-i686-2.7/chempy/cif.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy
copying build/lib.linux-i686-2.7/chempy/cpv.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy
copying build/lib.linux-i686-2.7/chempy/dictdb.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy
copying build/lib.linux-i686-2.7/chempy/gamess1.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy
copying build/lib.linux-i686-2.7/chempy/gms.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy
copying build/lib.linux-i686-2.7/chempy/hetatm.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy
copying build/lib.linux-i686-2.7/chempy/io.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy
copying build/lib.linux-i686-2.7/chempy/lst.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy
copying build/lib.linux-i686-2.7/chempy/mae.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy
copying build/lib.linux-i686-2.7/chempy/map.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy
copying build/lib.linux-i686-2.7/chempy/mass.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy
copying build/lib.linux-i686-2.7/chempy/mmd.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy
copying build/lib.linux-i686-2.7/chempy/models.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy
copying build/lib.linux-i686-2.7/chempy/mol.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy
copying build/lib.linux-i686-2.7/chempy/mol2.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy
copying build/lib.linux-i686-2.7/chempy/neighbor.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy
copying build/lib.linux-i686-2.7/chempy/pdb.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy
copying build/lib.linux-i686-2.7/chempy/pkl.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy
copying build/lib.linux-i686-2.7/chempy/place.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy
copying build/lib.linux-i686-2.7/chempy/protein.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy
copying build/lib.linux-i686-2.7/chempy/protein_amber.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy
copying build/lib.linux-i686-2.7/chempy/protein_amber99.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy
copying build/lib.linux-i686-2.7/chempy/protein_mmff.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy
copying build/lib.linux-i686-2.7/chempy/protein_residues.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy
copying build/lib.linux-i686-2.7/chempy/sdf.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy
copying build/lib.linux-i686-2.7/chempy/solvate.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy
copying build/lib.linux-i686-2.7/chempy/water_amber.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy
copying build/lib.linux-i686-2.7/chempy/water_residues.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy
copying build/lib.linux-i686-2.7/chempy/xyz.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy
creating /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bmin
copying build/lib.linux-i686-2.7/chempy/bmin/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bmin
copying build/lib.linux-i686-2.7/chempy/bmin/commands.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bmin
copying build/lib.linux-i686-2.7/chempy/bmin/realtime.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bmin
copying build/lib.linux-i686-2.7/chempy/bmin/state.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bmin
copying build/lib.linux-i686-2.7/chempy/bmin/util.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bmin
creating /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/champ
copying build/lib.linux-i686-2.7/chempy/champ/_champ.so -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/champ
copying build/lib.linux-i686-2.7/chempy/champ/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/champ
copying build/lib.linux-i686-2.7/chempy/champ/amber99.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/champ
copying build/lib.linux-i686-2.7/chempy/champ/assign.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/champ
copying build/lib.linux-i686-2.7/chempy/champ/formal_charges.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/champ
creating /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/fragments
copying build/lib.linux-i686-2.7/chempy/fragments/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/fragments
creating /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/fast
copying build/lib.linux-i686-2.7/chempy/fast/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/fast
creating /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mmtf
copying build/lib.linux-i686-2.7/chempy/mmtf/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mmtf
copying build/lib.linux-i686-2.7/chempy/mmtf/io.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mmtf
creating /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/tinker
copying build/lib.linux-i686-2.7/chempy/tinker/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/tinker
copying build/lib.linux-i686-2.7/chempy/tinker/amber.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/tinker
copying build/lib.linux-i686-2.7/chempy/tinker/keyword.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/tinker
copying build/lib.linux-i686-2.7/chempy/tinker/realtime.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/tinker
copying build/lib.linux-i686-2.7/chempy/tinker/state.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/tinker
creating /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/_cmd.so -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol
creating /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins
copying build/lib.linux-i686-2.7/pymol/plugins/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins
copying build/lib.linux-i686-2.7/pymol/plugins/installation.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins
copying build/lib.linux-i686-2.7/pymol/plugins/legacysupport.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins
copying build/lib.linux-i686-2.7/pymol/plugins/managergui.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins
copying build/lib.linux-i686-2.7/pymol/plugins/managergui_qt.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins
copying build/lib.linux-i686-2.7/pymol/plugins/repository.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins
copying build/lib.linux-i686-2.7/pymol/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/__main__.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/_gui.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/api.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/callback.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/cgo.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/checking.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/cmd.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/colorprinting.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/colorramping.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/commanding.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/completing.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/computing.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/constants.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/constants_palette.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/controlling.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/creating.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/diagnosing.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/editing.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/editor.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/experimenting.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/exporting.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/externing.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/feedingback.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/fitting.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/gui.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/headering.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/helping.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/importing.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/internal.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/invocation.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/keyboard.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/keywords.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/lazyio.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/locking.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/m4x.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/menu.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/monitoring.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/morphing.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/movie.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/moving.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/parser.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/parsing.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/povray.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/preset.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/pymolhttpd.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/querying.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/rpc.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/selecting.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/selector.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/seqalign.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/setting.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/shortcut.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/util.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/vfont.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/viewing.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/wizarding.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/xray.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol
copying build/lib.linux-i686-2.7/pymol/xwin.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol
creating /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard
copying build/lib.linux-i686-2.7/pymol/wizard/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard
copying build/lib.linux-i686-2.7/pymol/wizard/annotation.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard
copying build/lib.linux-i686-2.7/pymol/wizard/appearance.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard
copying build/lib.linux-i686-2.7/pymol/wizard/benchmark.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard
copying build/lib.linux-i686-2.7/pymol/wizard/box.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard
copying build/lib.linux-i686-2.7/pymol/wizard/charge.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard
copying build/lib.linux-i686-2.7/pymol/wizard/cleanup.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard
copying build/lib.linux-i686-2.7/pymol/wizard/command.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard
copying build/lib.linux-i686-2.7/pymol/wizard/demo.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard
copying build/lib.linux-i686-2.7/pymol/wizard/density.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard
copying build/lib.linux-i686-2.7/pymol/wizard/distance.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard
copying build/lib.linux-i686-2.7/pymol/wizard/dragging.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard
copying build/lib.linux-i686-2.7/pymol/wizard/fedora.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard
copying build/lib.linux-i686-2.7/pymol/wizard/filter.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard
copying build/lib.linux-i686-2.7/pymol/wizard/label.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard
copying build/lib.linux-i686-2.7/pymol/wizard/measurement.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard
copying build/lib.linux-i686-2.7/pymol/wizard/message.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard
copying build/lib.linux-i686-2.7/pymol/wizard/mutagenesis.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard
copying build/lib.linux-i686-2.7/pymol/wizard/nucmutagenesis.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard
copying build/lib.linux-i686-2.7/pymol/wizard/pair_fit.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard
copying build/lib.linux-i686-2.7/pymol/wizard/pseudoatom.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard
copying build/lib.linux-i686-2.7/pymol/wizard/renaming.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard
copying build/lib.linux-i686-2.7/pymol/wizard/sculpting.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard
copying build/lib.linux-i686-2.7/pymol/wizard/security.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard
copying build/lib.linux-i686-2.7/pymol/wizard/stereodemo.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard
copying build/lib.linux-i686-2.7/pymol/wizard/toggle.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard
creating /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/stereochemistry
copying build/lib.linux-i686-2.7/pymol/stereochemistry/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/stereochemistry
creating /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/Qt
copying build/lib.linux-i686-2.7/pymol/Qt/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/Qt
copying build/lib.linux-i686-2.7/pymol/Qt/utils.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/Qt
creating /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/contrib
copying build/lib.linux-i686-2.7/pymol/contrib/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/contrib
creating /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/opengl
copying build/lib.linux-i686-2.7/pymol/opengl/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/opengl
creating /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/opengl/gl
copying build/lib.linux-i686-2.7/pymol/opengl/gl/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/opengl/gl
creating /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/opengl/glut
copying build/lib.linux-i686-2.7/pymol/opengl/glut/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/opengl/glut
creating /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/opengl/glu
copying build/lib.linux-i686-2.7/pymol/opengl/glu/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/opengl/glu
creating /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/embed
creating /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/embed/wxpymol
copying build/lib.linux-i686-2.7/pymol/embed/wxpymol/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/embed/wxpymol
copying build/lib.linux-i686-2.7/pymol/embed/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/embed
creating /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/embed/epymol
copying build/lib.linux-i686-2.7/pymol/embed/epymol/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/embed/epymol
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol2/__init__.py to __init__.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol2/cmd2.py to cmd2.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/TextEditor.py to TextEditor.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/__init__.py to __init__.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/advanced_settings_gui.py to advanced_settings_gui.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/builder.py to builder.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/file_dialogs.py to file_dialogs.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/keymapping.py to keymapping.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/mimic_pmg_tk.py to mimic_pmg_tk.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/mimic_tk.py to mimic_tk.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/properties_dialog.py to properties_dialog.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/pymol_gl_widget.py to pymol_gl_widget.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/pymol_qt_gui.py to pymol_qt_gui.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/volume.py to volume.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/forms/__init__.py to __init__.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/syntax/__init__.py to __init__.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/syntax/pml.py to pml.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/syntax/pmlparser.py to pmlparser.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/syntax/python.py to python.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/ColorEditor.py to ColorEditor.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/Demo.py to Demo.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/PMGApp.py to PMGApp.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/PyMOLMapLoad.py to PyMOLMapLoad.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/SetEditor.py to SetEditor.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/Setting.py to Setting.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/TextEditor.py to TextEditor.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/__init__.py to __init__.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/volume.py to volume.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/startup/__init__.py to __init__.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/startup/apbs_tools.py to apbs_tools.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/normal/ModalWindow.py to ModalWindow.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/normal/__init__.py to __init__.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/normal/builder.py to builder.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/__init__.py to __init__.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/demo/__init__.py to __init__.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/__init__.py to __init__.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/arc.py to arc.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bond_amber.py to bond_amber.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bond_mmff.py to bond_mmff.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bonds.py to bonds.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/brick.py to brick.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/cc1.py to cc1.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/cex.py to cex.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/charge.py to charge.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/cif.py to cif.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/cpv.py to cpv.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/dictdb.py to dictdb.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/gamess1.py to gamess1.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/gms.py to gms.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/hetatm.py to hetatm.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/io.py to io.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/lst.py to lst.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mae.py to mae.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/map.py to map.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mass.py to mass.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mmd.py to mmd.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/models.py to models.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mol.py to mol.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mol2.py to mol2.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/neighbor.py to neighbor.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/pdb.py to pdb.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/pkl.py to pkl.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/place.py to place.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/protein.py to protein.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/protein_amber.py to protein_amber.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/protein_amber99.py to protein_amber99.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/protein_mmff.py to protein_mmff.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/protein_residues.py to protein_residues.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/sdf.py to sdf.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/solvate.py to solvate.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/water_amber.py to water_amber.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/water_residues.py to water_residues.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/xyz.py to xyz.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bmin/__init__.py to __init__.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bmin/commands.py to commands.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bmin/realtime.py to realtime.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bmin/state.py to state.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bmin/util.py to util.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/champ/__init__.py to __init__.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/champ/amber99.py to amber99.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/champ/assign.py to assign.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/champ/formal_charges.py to formal_charges.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/fragments/__init__.py to __init__.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/fast/__init__.py to __init__.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mmtf/__init__.py to __init__.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mmtf/io.py to io.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/tinker/__init__.py to __init__.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/tinker/amber.py to amber.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/tinker/keyword.py to keyword.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/tinker/realtime.py to realtime.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/tinker/state.py to state.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/__init__.py to __init__.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/installation.py to installation.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/legacysupport.py to legacysupport.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui.py to managergui.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui_qt.py to managergui_qt.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/repository.py to repository.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/__init__.py to __init__.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/__main__.py to __main__.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/_gui.py to _gui.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py to api.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/callback.py to callback.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cgo.py to cgo.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/checking.py to checking.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cmd.py to cmd.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/colorprinting.py to colorprinting.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/colorramping.py to colorramping.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/commanding.py to commanding.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/completing.py to completing.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/computing.py to computing.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/constants.py to constants.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/constants_palette.py to constants_palette.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/controlling.py to controlling.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/creating.py to creating.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/diagnosing.py to diagnosing.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/editing.py to editing.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/editor.py to editor.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/experimenting.py to experimenting.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/exporting.py to exporting.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/externing.py to externing.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/feedingback.py to feedingback.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/fitting.py to fitting.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/gui.py to gui.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/headering.py to headering.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/helping.py to helping.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/importing.py to importing.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/internal.py to internal.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/invocation.py to invocation.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/keyboard.py to keyboard.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/keywords.py to keywords.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/lazyio.py to lazyio.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/locking.py to locking.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/m4x.py to m4x.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/menu.py to menu.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/monitoring.py to monitoring.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/morphing.py to morphing.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/movie.py to movie.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/moving.py to moving.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/parser.py to parser.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/parsing.py to parsing.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/povray.py to povray.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/preset.py to preset.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymolhttpd.py to pymolhttpd.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/querying.py to querying.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/rpc.py to rpc.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/selecting.py to selecting.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/selector.py to selector.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/seqalign.py to seqalign.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/setting.py to setting.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/shortcut.py to shortcut.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/util.py to util.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/vfont.py to vfont.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/viewing.py to viewing.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizarding.py to wizarding.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/xray.py to xray.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/xwin.py to xwin.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/__init__.py to __init__.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/annotation.py to annotation.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/appearance.py to appearance.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/benchmark.py to benchmark.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/box.py to box.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/charge.py to charge.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/cleanup.py to cleanup.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/command.py to command.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/demo.py to demo.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/density.py to density.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/distance.py to distance.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/dragging.py to dragging.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/fedora.py to fedora.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/filter.py to filter.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/label.py to label.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/measurement.py to measurement.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/message.py to message.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/mutagenesis.py to mutagenesis.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/nucmutagenesis.py to nucmutagenesis.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/pair_fit.py to pair_fit.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/pseudoatom.py to pseudoatom.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/renaming.py to renaming.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/sculpting.py to sculpting.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/security.py to security.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/stereodemo.py to stereodemo.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/toggle.py to toggle.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/stereochemistry/__init__.py to __init__.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/Qt/__init__.py to __init__.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/Qt/utils.py to utils.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/contrib/__init__.py to __init__.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/opengl/__init__.py to __init__.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/opengl/gl/__init__.py to __init__.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/opengl/glut/__init__.py to __init__.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/opengl/glu/__init__.py to __init__.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/embed/wxpymol/__init__.py to __init__.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/embed/__init__.py to __init__.pyc
byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/embed/epymol/__init__.py to __init__.pyc
running install_egg_info
Writing /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol-2.3.0-py2.7.egg-info
creating /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path
copying LICENSE -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path
copying data -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/data
copying test -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test
copying scripts -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/scripts
copying examples -> /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples
creating /usr/src/tmp/pymol-buildroot/usr/bin
+ for i in contrib/champ contrib/mmtf-c contrib/uiuc/plugins/include contrib/uiuc/plugins/molfile_plugin/src layer0 layer1 layer2 layer3 layer4 layer5 ov/src
+ mkdir -p /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/champ
+ install -pm644 contrib/champ/champ.h contrib/champ/chiral.h contrib/champ/const.h contrib/champ/err2.h contrib/champ/feedback2.h contrib/champ/list.h contrib/champ/mac.h contrib/champ/os_memory.h contrib/champ/os_python.h contrib/champ/os_std.h contrib/champ/sort.h contrib/champ/strblock.h contrib/champ/vla.h /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/champ/
+ for i in contrib/champ contrib/mmtf-c contrib/uiuc/plugins/include contrib/uiuc/plugins/molfile_plugin/src layer0 layer1 layer2 layer3 layer4 layer5 ov/src
+ mkdir -p /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/mmtf-c
+ install -pm644 contrib/mmtf-c/mmtf_parser.h contrib/mmtf-c/mmtf_parser_private.h /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/mmtf-c/
+ for i in contrib/champ contrib/mmtf-c contrib/uiuc/plugins/include contrib/uiuc/plugins/molfile_plugin/src layer0 layer1 layer2 layer3 layer4 layer5 ov/src
+ mkdir -p /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/uiuc/plugins/include
+ install -pm644 contrib/uiuc/plugins/include/import_graphics_plugin.h contrib/uiuc/plugins/include/molfile_plugin.h contrib/uiuc/plugins/include/vmdconio.h contrib/uiuc/plugins/include/vmdplugin.h /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/uiuc/plugins/include/
+ for i in contrib/champ contrib/mmtf-c contrib/uiuc/plugins/include contrib/uiuc/plugins/molfile_plugin/src layer0 layer1 layer2 layer3 layer4 layer5 ov/src
+ mkdir -p /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/uiuc/plugins/molfile_plugin/src
+ install -pm644 contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h contrib/uiuc/plugins/molfile_plugin/src/endianswap.h contrib/uiuc/plugins/molfile_plugin/src/fastio.h contrib/uiuc/plugins/molfile_plugin/src/fortread.h contrib/uiuc/plugins/molfile_plugin/src/gaussianplugin.h contrib/uiuc/plugins/molfile_plugin/src/hash.h contrib/uiuc/plugins/molfile_plugin/src/inthash.h contrib/uiuc/plugins/molfile_plugin/src/largefiles.h contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h contrib/uiuc/plugins/molfile_plugin/src/ply.h contrib/uiuc/plugins/molfile_plugin/src/ply_c.h contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h contrib/uiuc/plugins/molfile_plugin/src/readpdb.h contrib/uiuc/plugins/molfile_plugin/src/unit_conversion.h contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h contrib/uiuc/plugins/molfile_plugin/src/vmddir.h /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/uiuc/plugins/molfile_plugin/src/
+ for i in contrib/champ contrib/mmtf-c contrib/uiuc/plugins/include contrib/uiuc/plugins/molfile_plugin/src layer0 layer1 layer2 layer3 layer4 layer5 ov/src
+ mkdir -p /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0
+ install -pm644 layer0/Base.h layer0/Block.h layer0/Crystal.h layer0/Debug.h layer0/Deferred.h layer0/Err.h layer0/Feedback.h layer0/Field.h layer0/File.h layer0/GenericBuffer.h layer0/GraphicsUtil.h layer0/Isosurf.h layer0/LangUtil.h layer0/Lex.h layer0/ListMacros.h layer0/Map.h layer0/Match.h layer0/Matrix.h layer0/MemoryCache.h layer0/MemoryDebug.h layer0/MyPNG.h layer0/OOMac.h layer0/Parse.h layer0/Pixmap.h layer0/PyMOLGlobals.h layer0/PyMOLOptions.h layer0/ShaderMgr.h layer0/Sphere.h layer0/SphereData.h layer0/Tetsurf.h layer0/Texture.h layer0/Tracker.h layer0/Triangle.h layer0/Util.h layer0/Util2.h layer0/Vector.h layer0/Version.h layer0/Word.h layer0/lex_constants.h layer0/os_gl.h layer0/os_limits.h layer0/os_numpy.h layer0/os_predef.h layer0/os_proprietary.h layer0/os_python.h layer0/os_std.h layer0/os_time.h layer0/os_types.h layer0/os_unix.h layer0/strcasecmp.h layer0/vla.h /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/
+ for i in contrib/champ contrib/mmtf-c contrib/uiuc/plugins/include contrib/uiuc/plugins/molfile_plugin/src layer0 layer1 layer2 layer3 layer4 layer5 ov/src
+ mkdir -p /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1
+ install -pm644 layer1/Basis.h layer1/ButMode.h layer1/CGO.h layer1/Character.h layer1/Color.h layer1/Control.h layer1/Extrude.h layer1/Font.h layer1/FontGLUT.h layer1/FontTTF.h layer1/FontTTF2.h layer1/FontType.h layer1/Image.h layer1/Movie.h layer1/Ortho.h layer1/P.h layer1/PConv.h layer1/PConvArgs.h layer1/Pop.h layer1/PyMOLObject.h layer1/Ray.h layer1/Rep.h layer1/Scene.h layer1/SceneDef.h layer1/ScenePicking.h layer1/SceneRay.h layer1/SceneRender.h layer1/ScrollBar.h layer1/Seq.h layer1/Setting.h layer1/SettingInfo.h layer1/Shaker.h layer1/Symmetry.h layer1/Text.h layer1/TypeFace.h layer1/View.h layer1/Wizard.h /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/
+ for i in contrib/champ contrib/mmtf-c contrib/uiuc/plugins/include contrib/uiuc/plugins/molfile_plugin/src layer0 layer1 layer2 layer3 layer4 layer5 ov/src
+ mkdir -p /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2
+ install -pm644 layer2/AssemblyHelpers.h layer2/AtomInfo.h layer2/AtomInfoHistory.h layer2/BondTypeHistory.h layer2/CifBondDict.h layer2/CifFile.h layer2/CoordSet.h layer2/DistSet.h layer2/GadgetSet.h layer2/HydrogenAdder.h layer2/MmodTyping.h layer2/Mol2Typing.h layer2/MolV3000.h layer2/ObjectAlignment.h layer2/ObjectCGO.h layer2/ObjectCallback.h layer2/ObjectDist.h layer2/ObjectGadget.h layer2/ObjectGadgetRamp.h layer2/ObjectGroup.h layer2/ObjectMap.h layer2/ObjectMesh.h layer2/ObjectMolecule.h layer2/ObjectSlice.h layer2/ObjectSurface.h layer2/ObjectVolume.h layer2/RepAngle.h layer2/RepCartoon.h layer2/RepCylBond.h layer2/RepDihedral.h layer2/RepDistDash.h layer2/RepDistLabel.h layer2/RepDot.h layer2/RepEllipsoid.h layer2/RepLabel.h layer2/RepMesh.h layer2/RepNonbonded.h layer2/RepNonbondedSphere.h layer2/RepRibbon.h layer2/RepSphere.h layer2/RepSphereGenerate.h layer2/RepSphereImmediate.h layer2/RepSurface.h layer2/RepWireBond.h layer2/Sculpt.h layer2/SculptCache.h layer2/SideChainHelper.h layer2/VFont.h /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/
+ for i in contrib/champ contrib/mmtf-c contrib/uiuc/plugins/include contrib/uiuc/plugins/molfile_plugin/src layer0 layer1 layer2 layer3 layer4 layer5 ov/src
+ mkdir -p /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer3
+ install -pm644 layer3/AtomIterators.h layer3/CifDataValueFormatter.h layer3/Editor.h layer3/Executive.h layer3/Executive_pre.h layer3/MaeExportHelpers.h layer3/MoleculeExporter.h layer3/MovieScene.h layer3/PlugIOManager.h layer3/Seeker.h layer3/Selector.h layer3/SelectorDef.h layer3/SpecRec.h /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer3/
+ for i in contrib/champ contrib/mmtf-c contrib/uiuc/plugins/include contrib/uiuc/plugins/molfile_plugin/src layer0 layer1 layer2 layer3 layer4 layer5 ov/src
+ mkdir -p /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer4
+ install -pm644 layer4/Cmd.h layer4/Export.h layer4/Menu.h layer4/PopUp.h /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer4/
+ for i in contrib/champ contrib/mmtf-c contrib/uiuc/plugins/include contrib/uiuc/plugins/molfile_plugin/src layer0 layer1 layer2 layer3 layer4 layer5 ov/src
+ mkdir -p /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer5
+ install -pm644 layer5/MacPyMOL.h layer5/PyMOL.h layer5/TestPyMOL.h layer5/main.h /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer5/
+ for i in contrib/champ contrib/mmtf-c contrib/uiuc/plugins/include contrib/uiuc/plugins/molfile_plugin/src layer0 layer1 layer2 layer3 layer4 layer5 ov/src
+ mkdir -p /usr/src/tmp/pymol-buildroot/usr/include/pymol/ov/src
+ install -pm644 ov/src/OVContext.h ov/src/OVHeap.h ov/src/OVHeapArray.h ov/src/OVLexicon.h ov/src/OVOneToAny.h ov/src/OVOneToOne.h ov/src/OVRandom.h ov/src/OVreturns.h ov/src/ov_defines.h ov/src/ov_port.h ov/src/ov_status.h ov/src/ov_types.h ov/src/ov_utility.h /usr/src/tmp/pymol-buildroot/usr/include/pymol/ov/src/
+ mkdir -p /usr/src/tmp/pymol-buildroot/usr/bin
+ cat
+ chmod +x /usr/src/tmp/pymol-buildroot/usr/bin/pymol
+ mkdir -pv /usr/src/tmp/pymol-buildroot/usr/share/doc/PyMOL
mkdir: created directory '/usr/src/tmp/pymol-buildroot/usr/share'
mkdir: created directory '/usr/src/tmp/pymol-buildroot/usr/share/doc'
mkdir: created directory '/usr/src/tmp/pymol-buildroot/usr/share/doc/PyMOL'
+ cp PymolRef.pdf /usr/src/tmp/pymol-buildroot/usr/share/doc/PyMOL/
+ /usr/lib/rpm/brp-alt
Cleaning files in /usr/src/tmp/pymol-buildroot (auto)
mode of './usr/lib/python2.7/site-packages/pymol/_cmd.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--)
mode of './usr/lib/python2.7/site-packages/chempy/champ/_champ.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--)
Verifying and fixing files in /usr/src/tmp/pymol-buildroot (binconfig,pkgconfig,libtool,desktop)
Checking contents of files in /usr/src/tmp/pymol-buildroot/ (default)
Compressing files in /usr/src/tmp/pymol-buildroot (auto)
Adjusting library links in /usr/src/tmp/pymol-buildroot
./usr/lib:
Verifying ELF objects in /usr/src/tmp/pymol-buildroot (arch=normal,fhs=normal,lfs=relaxed,lint=relaxed,rpath=normal,stack=normal,textrel=normal,unresolved=normal)
verify-elf: WARNING: ./usr/lib/python2.7/site-packages/pymol/_cmd.so: uses non-LFS functions: __fxstat __lxstat __xstat fopen ftello lseek open readdir
Bytecompiling python modules in /usr/src/tmp/pymol-buildroot using /usr/bin/python2.7
unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bmin/__init__.pyc
unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bmin/commands.pyc
unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bmin/realtime.pyc
unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bmin/state.pyc
unlink /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bmin/util.pyc
compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bmin/__init__.py
compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bmin/commands.py
compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bmin/realtime.py
compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bmin/state.py
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compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/PyMOLMapLoad.py
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compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/Setting.py
compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/TextEditor.py
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compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/cgo_plane.py
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compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/demo.py
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compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/label.py
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compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/nucmutagenesis.py
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compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cgo.py
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compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/computing.py
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compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/povray.py
compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/preset.py
compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymolhttpd.py
compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/querying.py
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compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/seqalign.py
compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/setting.py
compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/shortcut.py
compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/util.py
compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/vfont.py
compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/viewing.py
compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizarding.py
compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/xray.py
compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/xwin.py
compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol2/__init__.py
compile /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol2/cmd2.py
Hardlinking identical .pyc and .pyo files
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'./usr/lib/python2.7/site-packages/pymol/viewing.pyo' => './usr/lib/python2.7/site-packages/pymol/viewing.pyc'
'./usr/lib/python2.7/site-packages/pymol/vfont.pyo' => './usr/lib/python2.7/site-packages/pymol/vfont.pyc'
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'./usr/lib/python2.7/site-packages/pymol/setting.pyo' => './usr/lib/python2.7/site-packages/pymol/setting.pyc'
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'./usr/lib/python2.7/site-packages/pymol/selecting.pyo' => './usr/lib/python2.7/site-packages/pymol/selecting.pyc'
'./usr/lib/python2.7/site-packages/pymol/rpc.pyo' => './usr/lib/python2.7/site-packages/pymol/rpc.pyc'
'./usr/lib/python2.7/site-packages/pymol/querying.pyo' => './usr/lib/python2.7/site-packages/pymol/querying.pyc'
'./usr/lib/python2.7/site-packages/pymol/pymolhttpd.pyo' => './usr/lib/python2.7/site-packages/pymol/pymolhttpd.pyc'
'./usr/lib/python2.7/site-packages/pymol/preset.pyo' => './usr/lib/python2.7/site-packages/pymol/preset.pyc'
'./usr/lib/python2.7/site-packages/pymol/povray.pyo' => './usr/lib/python2.7/site-packages/pymol/povray.pyc'
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'./usr/lib/python2.7/site-packages/pymol/m4x.pyo' => './usr/lib/python2.7/site-packages/pymol/m4x.pyc'
'./usr/lib/python2.7/site-packages/pymol/locking.pyo' => './usr/lib/python2.7/site-packages/pymol/locking.pyc'
'./usr/lib/python2.7/site-packages/pymol/lazyio.pyo' => './usr/lib/python2.7/site-packages/pymol/lazyio.pyc'
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'./usr/lib/python2.7/site-packages/pymol/contrib/__init__.pyo' => './usr/lib/python2.7/site-packages/pymol/contrib/__init__.pyc'
'./usr/lib/python2.7/site-packages/pymol/Qt/__init__.pyo' => './usr/lib/python2.7/site-packages/pymol/Qt/__init__.pyc'
'./usr/lib/python2.7/site-packages/pymol/stereochemistry/__init__.pyo' => './usr/lib/python2.7/site-packages/pymol/stereochemistry/__init__.pyc'
'./usr/lib/python2.7/site-packages/pymol/wizard/toggle.pyo' => './usr/lib/python2.7/site-packages/pymol/wizard/toggle.pyc'
'./usr/lib/python2.7/site-packages/pymol/wizard/stereodemo.pyo' => './usr/lib/python2.7/site-packages/pymol/wizard/stereodemo.pyc'
'./usr/lib/python2.7/site-packages/pymol/wizard/security.pyo' => './usr/lib/python2.7/site-packages/pymol/wizard/security.pyc'
'./usr/lib/python2.7/site-packages/pymol/wizard/sculpting.pyo' => './usr/lib/python2.7/site-packages/pymol/wizard/sculpting.pyc'
'./usr/lib/python2.7/site-packages/pymol/wizard/renaming.pyo' => './usr/lib/python2.7/site-packages/pymol/wizard/renaming.pyc'
'./usr/lib/python2.7/site-packages/pymol/wizard/pseudoatom.pyo' => './usr/lib/python2.7/site-packages/pymol/wizard/pseudoatom.pyc'
'./usr/lib/python2.7/site-packages/pymol/wizard/pair_fit.pyo' => './usr/lib/python2.7/site-packages/pymol/wizard/pair_fit.pyc'
'./usr/lib/python2.7/site-packages/pymol/wizard/nucmutagenesis.pyo' => './usr/lib/python2.7/site-packages/pymol/wizard/nucmutagenesis.pyc'
'./usr/lib/python2.7/site-packages/pymol/wizard/mutagenesis.pyo' => './usr/lib/python2.7/site-packages/pymol/wizard/mutagenesis.pyc'
'./usr/lib/python2.7/site-packages/pymol/wizard/message.pyo' => './usr/lib/python2.7/site-packages/pymol/wizard/message.pyc'
'./usr/lib/python2.7/site-packages/pymol/wizard/measurement.pyo' => './usr/lib/python2.7/site-packages/pymol/wizard/measurement.pyc'
'./usr/lib/python2.7/site-packages/pymol/wizard/label.pyo' => './usr/lib/python2.7/site-packages/pymol/wizard/label.pyc'
'./usr/lib/python2.7/site-packages/pymol/wizard/filter.pyo' => './usr/lib/python2.7/site-packages/pymol/wizard/filter.pyc'
'./usr/lib/python2.7/site-packages/pymol/wizard/fedora.pyo' => './usr/lib/python2.7/site-packages/pymol/wizard/fedora.pyc'
'./usr/lib/python2.7/site-packages/pymol/wizard/dragging.pyo' => './usr/lib/python2.7/site-packages/pymol/wizard/dragging.pyc'
'./usr/lib/python2.7/site-packages/pymol/wizard/distance.pyo' => './usr/lib/python2.7/site-packages/pymol/wizard/distance.pyc'
'./usr/lib/python2.7/site-packages/pymol/wizard/density.pyo' => './usr/lib/python2.7/site-packages/pymol/wizard/density.pyc'
'./usr/lib/python2.7/site-packages/pymol/wizard/demo.pyo' => './usr/lib/python2.7/site-packages/pymol/wizard/demo.pyc'
'./usr/lib/python2.7/site-packages/pymol/wizard/command.pyo' => './usr/lib/python2.7/site-packages/pymol/wizard/command.pyc'
'./usr/lib/python2.7/site-packages/pymol/wizard/cleanup.pyo' => './usr/lib/python2.7/site-packages/pymol/wizard/cleanup.pyc'
'./usr/lib/python2.7/site-packages/pymol/wizard/charge.pyo' => './usr/lib/python2.7/site-packages/pymol/wizard/charge.pyc'
'./usr/lib/python2.7/site-packages/pymol/wizard/box.pyo' => './usr/lib/python2.7/site-packages/pymol/wizard/box.pyc'
'./usr/lib/python2.7/site-packages/pymol/wizard/benchmark.pyo' => './usr/lib/python2.7/site-packages/pymol/wizard/benchmark.pyc'
'./usr/lib/python2.7/site-packages/pymol/wizard/appearance.pyo' => './usr/lib/python2.7/site-packages/pymol/wizard/appearance.pyc'
'./usr/lib/python2.7/site-packages/pymol/wizard/annotation.pyo' => './usr/lib/python2.7/site-packages/pymol/wizard/annotation.pyc'
'./usr/lib/python2.7/site-packages/pymol/wizard/__init__.pyo' => './usr/lib/python2.7/site-packages/pymol/wizard/__init__.pyc'
'./usr/lib/python2.7/site-packages/pymol/plugins/managergui_qt.pyo' => './usr/lib/python2.7/site-packages/pymol/plugins/managergui_qt.pyc'
'./usr/lib/python2.7/site-packages/pymol/plugins/managergui.pyo' => './usr/lib/python2.7/site-packages/pymol/plugins/managergui.pyc'
'./usr/lib/python2.7/site-packages/pymol/plugins/legacysupport.pyo' => './usr/lib/python2.7/site-packages/pymol/plugins/legacysupport.pyc'
'./usr/lib/python2.7/site-packages/pymol/plugins/installation.pyo' => './usr/lib/python2.7/site-packages/pymol/plugins/installation.pyc'
'./usr/lib/python2.7/site-packages/chempy/xyz.pyo' => './usr/lib/python2.7/site-packages/chempy/xyz.pyc'
'./usr/lib/python2.7/site-packages/chempy/water_residues.pyo' => './usr/lib/python2.7/site-packages/chempy/water_residues.pyc'
'./usr/lib/python2.7/site-packages/chempy/water_amber.pyo' => './usr/lib/python2.7/site-packages/chempy/water_amber.pyc'
'./usr/lib/python2.7/site-packages/chempy/solvate.pyo' => './usr/lib/python2.7/site-packages/chempy/solvate.pyc'
'./usr/lib/python2.7/site-packages/chempy/sdf.pyo' => './usr/lib/python2.7/site-packages/chempy/sdf.pyc'
'./usr/lib/python2.7/site-packages/chempy/protein_residues.pyo' => './usr/lib/python2.7/site-packages/chempy/protein_residues.pyc'
'./usr/lib/python2.7/site-packages/chempy/protein_mmff.pyo' => './usr/lib/python2.7/site-packages/chempy/protein_mmff.pyc'
'./usr/lib/python2.7/site-packages/chempy/protein_amber99.pyo' => './usr/lib/python2.7/site-packages/chempy/protein_amber99.pyc'
'./usr/lib/python2.7/site-packages/chempy/protein_amber.pyo' => './usr/lib/python2.7/site-packages/chempy/protein_amber.pyc'
'./usr/lib/python2.7/site-packages/chempy/protein.pyo' => './usr/lib/python2.7/site-packages/chempy/protein.pyc'
'./usr/lib/python2.7/site-packages/chempy/place.pyo' => './usr/lib/python2.7/site-packages/chempy/place.pyc'
'./usr/lib/python2.7/site-packages/chempy/pkl.pyo' => './usr/lib/python2.7/site-packages/chempy/pkl.pyc'
'./usr/lib/python2.7/site-packages/chempy/pdb.pyo' => './usr/lib/python2.7/site-packages/chempy/pdb.pyc'
'./usr/lib/python2.7/site-packages/chempy/neighbor.pyo' => './usr/lib/python2.7/site-packages/chempy/neighbor.pyc'
'./usr/lib/python2.7/site-packages/chempy/mol2.pyo' => './usr/lib/python2.7/site-packages/chempy/mol2.pyc'
'./usr/lib/python2.7/site-packages/chempy/mol.pyo' => './usr/lib/python2.7/site-packages/chempy/mol.pyc'
'./usr/lib/python2.7/site-packages/chempy/models.pyo' => './usr/lib/python2.7/site-packages/chempy/models.pyc'
'./usr/lib/python2.7/site-packages/chempy/mmd.pyo' => './usr/lib/python2.7/site-packages/chempy/mmd.pyc'
'./usr/lib/python2.7/site-packages/chempy/mass.pyo' => './usr/lib/python2.7/site-packages/chempy/mass.pyc'
'./usr/lib/python2.7/site-packages/chempy/map.pyo' => './usr/lib/python2.7/site-packages/chempy/map.pyc'
'./usr/lib/python2.7/site-packages/chempy/mae.pyo' => './usr/lib/python2.7/site-packages/chempy/mae.pyc'
'./usr/lib/python2.7/site-packages/chempy/lst.pyo' => './usr/lib/python2.7/site-packages/chempy/lst.pyc'
'./usr/lib/python2.7/site-packages/chempy/io.pyo' => './usr/lib/python2.7/site-packages/chempy/io.pyc'
'./usr/lib/python2.7/site-packages/chempy/hetatm.pyo' => './usr/lib/python2.7/site-packages/chempy/hetatm.pyc'
'./usr/lib/python2.7/site-packages/chempy/gms.pyo' => './usr/lib/python2.7/site-packages/chempy/gms.pyc'
'./usr/lib/python2.7/site-packages/chempy/gamess1.pyo' => './usr/lib/python2.7/site-packages/chempy/gamess1.pyc'
'./usr/lib/python2.7/site-packages/chempy/dictdb.pyo' => './usr/lib/python2.7/site-packages/chempy/dictdb.pyc'
'./usr/lib/python2.7/site-packages/chempy/cpv.pyo' => './usr/lib/python2.7/site-packages/chempy/cpv.pyc'
'./usr/lib/python2.7/site-packages/chempy/cif.pyo' => './usr/lib/python2.7/site-packages/chempy/cif.pyc'
'./usr/lib/python2.7/site-packages/chempy/charge.pyo' => './usr/lib/python2.7/site-packages/chempy/charge.pyc'
'./usr/lib/python2.7/site-packages/chempy/cex.pyo' => './usr/lib/python2.7/site-packages/chempy/cex.pyc'
'./usr/lib/python2.7/site-packages/chempy/cc1.pyo' => './usr/lib/python2.7/site-packages/chempy/cc1.pyc'
'./usr/lib/python2.7/site-packages/chempy/bonds.pyo' => './usr/lib/python2.7/site-packages/chempy/bonds.pyc'
'./usr/lib/python2.7/site-packages/chempy/bond_mmff.pyo' => './usr/lib/python2.7/site-packages/chempy/bond_mmff.pyc'
'./usr/lib/python2.7/site-packages/chempy/bond_amber.pyo' => './usr/lib/python2.7/site-packages/chempy/bond_amber.pyc'
'./usr/lib/python2.7/site-packages/chempy/arc.pyo' => './usr/lib/python2.7/site-packages/chempy/arc.pyc'
'./usr/lib/python2.7/site-packages/chempy/__init__.pyo' => './usr/lib/python2.7/site-packages/chempy/__init__.pyc'
'./usr/lib/python2.7/site-packages/chempy/tinker/state.pyo' => './usr/lib/python2.7/site-packages/chempy/tinker/state.pyc'
'./usr/lib/python2.7/site-packages/chempy/tinker/realtime.pyo' => './usr/lib/python2.7/site-packages/chempy/tinker/realtime.pyc'
'./usr/lib/python2.7/site-packages/chempy/tinker/keyword.pyo' => './usr/lib/python2.7/site-packages/chempy/tinker/keyword.pyc'
'./usr/lib/python2.7/site-packages/chempy/tinker/amber.pyo' => './usr/lib/python2.7/site-packages/chempy/tinker/amber.pyc'
'./usr/lib/python2.7/site-packages/chempy/tinker/__init__.pyo' => './usr/lib/python2.7/site-packages/chempy/tinker/__init__.pyc'
'./usr/lib/python2.7/site-packages/chempy/mmtf/io.pyo' => './usr/lib/python2.7/site-packages/chempy/mmtf/io.pyc'
'./usr/lib/python2.7/site-packages/chempy/mmtf/__init__.pyo' => './usr/lib/python2.7/site-packages/chempy/mmtf/__init__.pyc'
'./usr/lib/python2.7/site-packages/chempy/fast/__init__.pyo' => './usr/lib/python2.7/site-packages/chempy/fast/__init__.pyc'
'./usr/lib/python2.7/site-packages/chempy/fragments/__init__.pyo' => './usr/lib/python2.7/site-packages/chempy/fragments/__init__.pyc'
'./usr/lib/python2.7/site-packages/chempy/champ/formal_charges.pyo' => './usr/lib/python2.7/site-packages/chempy/champ/formal_charges.pyc'
'./usr/lib/python2.7/site-packages/chempy/champ/assign.pyo' => './usr/lib/python2.7/site-packages/chempy/champ/assign.pyc'
'./usr/lib/python2.7/site-packages/chempy/champ/amber99.pyo' => './usr/lib/python2.7/site-packages/chempy/champ/amber99.pyc'
'./usr/lib/python2.7/site-packages/chempy/champ/__init__.pyo' => './usr/lib/python2.7/site-packages/chempy/champ/__init__.pyc'
'./usr/lib/python2.7/site-packages/chempy/bmin/util.pyo' => './usr/lib/python2.7/site-packages/chempy/bmin/util.pyc'
'./usr/lib/python2.7/site-packages/chempy/bmin/state.pyo' => './usr/lib/python2.7/site-packages/chempy/bmin/state.pyc'
'./usr/lib/python2.7/site-packages/chempy/bmin/realtime.pyo' => './usr/lib/python2.7/site-packages/chempy/bmin/realtime.pyc'
'./usr/lib/python2.7/site-packages/chempy/bmin/commands.pyo' => './usr/lib/python2.7/site-packages/chempy/bmin/commands.pyc'
'./usr/lib/python2.7/site-packages/chempy/bmin/__init__.pyo' => './usr/lib/python2.7/site-packages/chempy/bmin/__init__.pyc'
'./usr/lib/python2.7/site-packages/pmg_tk/volume.pyo' => './usr/lib/python2.7/site-packages/pmg_tk/volume.pyc'
'./usr/lib/python2.7/site-packages/pmg_tk/__init__.pyo' => './usr/lib/python2.7/site-packages/pmg_tk/__init__.pyc'
'./usr/lib/python2.7/site-packages/pmg_tk/TextEditor.pyo' => './usr/lib/python2.7/site-packages/pmg_tk/TextEditor.pyc'
'./usr/lib/python2.7/site-packages/pmg_tk/Setting.pyo' => './usr/lib/python2.7/site-packages/pmg_tk/Setting.pyc'
'./usr/lib/python2.7/site-packages/pmg_tk/SetEditor.pyo' => './usr/lib/python2.7/site-packages/pmg_tk/SetEditor.pyc'
'./usr/lib/python2.7/site-packages/pmg_tk/PyMOLMapLoad.pyo' => './usr/lib/python2.7/site-packages/pmg_tk/PyMOLMapLoad.pyc'
'./usr/lib/python2.7/site-packages/pmg_tk/PMGApp.pyo' => './usr/lib/python2.7/site-packages/pmg_tk/PMGApp.pyc'
'./usr/lib/python2.7/site-packages/pmg_tk/Demo.pyo' => './usr/lib/python2.7/site-packages/pmg_tk/Demo.pyc'
'./usr/lib/python2.7/site-packages/pmg_tk/ColorEditor.pyo' => './usr/lib/python2.7/site-packages/pmg_tk/ColorEditor.pyc'
'./usr/lib/python2.7/site-packages/pmg_tk/skins/__init__.pyo' => './usr/lib/python2.7/site-packages/pmg_tk/skins/__init__.pyc'
'./usr/lib/python2.7/site-packages/pmg_tk/skins/demo/__init__.pyo' => './usr/lib/python2.7/site-packages/pmg_tk/skins/demo/__init__.pyc'
'./usr/lib/python2.7/site-packages/pmg_tk/skins/normal/builder.pyo' => './usr/lib/python2.7/site-packages/pmg_tk/skins/normal/builder.pyc'
'./usr/lib/python2.7/site-packages/pmg_tk/skins/normal/ModalWindow.pyo' => './usr/lib/python2.7/site-packages/pmg_tk/skins/normal/ModalWindow.pyc'
'./usr/lib/python2.7/site-packages/pmg_tk/startup/apbs_tools.pyo' => './usr/lib/python2.7/site-packages/pmg_tk/startup/apbs_tools.pyc'
'./usr/lib/python2.7/site-packages/pmg_tk/startup/__init__.pyo' => './usr/lib/python2.7/site-packages/pmg_tk/startup/__init__.pyc'
'./usr/lib/python2.7/site-packages/pmg_qt/volume.pyo' => './usr/lib/python2.7/site-packages/pmg_qt/volume.pyc'
'./usr/lib/python2.7/site-packages/pmg_qt/pymol_gl_widget.pyo' => './usr/lib/python2.7/site-packages/pmg_qt/pymol_gl_widget.pyc'
'./usr/lib/python2.7/site-packages/pmg_qt/properties_dialog.pyo' => './usr/lib/python2.7/site-packages/pmg_qt/properties_dialog.pyc'
'./usr/lib/python2.7/site-packages/pmg_qt/mimic_tk.pyo' => './usr/lib/python2.7/site-packages/pmg_qt/mimic_tk.pyc'
'./usr/lib/python2.7/site-packages/pmg_qt/mimic_pmg_tk.pyo' => './usr/lib/python2.7/site-packages/pmg_qt/mimic_pmg_tk.pyc'
'./usr/lib/python2.7/site-packages/pmg_qt/keymapping.pyo' => './usr/lib/python2.7/site-packages/pmg_qt/keymapping.pyc'
'./usr/lib/python2.7/site-packages/pmg_qt/file_dialogs.pyo' => './usr/lib/python2.7/site-packages/pmg_qt/file_dialogs.pyc'
'./usr/lib/python2.7/site-packages/pmg_qt/builder.pyo' => './usr/lib/python2.7/site-packages/pmg_qt/builder.pyc'
'./usr/lib/python2.7/site-packages/pmg_qt/advanced_settings_gui.pyo' => './usr/lib/python2.7/site-packages/pmg_qt/advanced_settings_gui.pyc'
'./usr/lib/python2.7/site-packages/pmg_qt/__init__.pyo' => './usr/lib/python2.7/site-packages/pmg_qt/__init__.pyc'
'./usr/lib/python2.7/site-packages/pmg_qt/TextEditor.pyo' => './usr/lib/python2.7/site-packages/pmg_qt/TextEditor.pyc'
'./usr/lib/python2.7/site-packages/pmg_qt/syntax/python.pyo' => './usr/lib/python2.7/site-packages/pmg_qt/syntax/python.pyc'
'./usr/lib/python2.7/site-packages/pmg_qt/syntax/pmlparser.pyo' => './usr/lib/python2.7/site-packages/pmg_qt/syntax/pmlparser.pyc'
'./usr/lib/python2.7/site-packages/pmg_qt/syntax/pml.pyo' => './usr/lib/python2.7/site-packages/pmg_qt/syntax/pml.pyc'
'./usr/lib/python2.7/site-packages/pmg_qt/syntax/__init__.pyo' => './usr/lib/python2.7/site-packages/pmg_qt/syntax/__init__.pyc'
'./usr/lib/python2.7/site-packages/pmg_qt/forms/__init__.pyo' => './usr/lib/python2.7/site-packages/pmg_qt/forms/__init__.pyc'
'./usr/lib/python2.7/site-packages/pymol2/cmd2.pyo' => './usr/lib/python2.7/site-packages/pymol2/cmd2.pyc'
'./usr/lib/python2.7/site-packages/pymol2/__init__.pyo' => './usr/lib/python2.7/site-packages/pymol2/__init__.pyc'
Processing files: pymol-2.3.0-alt1
Executing(%doc): /bin/sh -e /usr/src/tmp/rpm-tmp.80197
+ umask 022
+ /bin/mkdir -p /usr/src/RPM/BUILD
+ cd /usr/src/RPM/BUILD
+ cd pymol-2.3.0
+ DOCDIR=/usr/src/tmp/pymol-buildroot/usr/share/doc/pymol-2.3.0
+ export DOCDIR
+ rm -rf /usr/src/tmp/pymol-buildroot/usr/share/doc/pymol-2.3.0
+ /bin/mkdir -p /usr/src/tmp/pymol-buildroot/usr/share/doc/pymol-2.3.0
+ cp -prL ChangeLog AUTHORS README LICENSE /usr/src/tmp/pymol-buildroot/usr/share/doc/pymol-2.3.0
+ chmod -R go-w /usr/src/tmp/pymol-buildroot/usr/share/doc/pymol-2.3.0
+ chmod -R a+rX /usr/src/tmp/pymol-buildroot/usr/share/doc/pymol-2.3.0
+ exit 0
Finding Provides (using /usr/lib/rpm/find-provides)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.xdkosI
find-provides: running scripts (alternatives,debuginfo,gir,lib,pam,perl,pkgconfig,python,shell,typelib)
Finding Requires (using /usr/lib/rpm/find-requires)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.lQaNuO
find-requires: running scripts (cpp,debuginfo,files,gir-js,gir-python,gir,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks,systemd-services,typelib)
Requires: python-module-pymol = 2.3.0-alt1, /bin/sh, /usr/bin/python2.7
Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.5Jo7Qn
Processing files: pymol-devel-2.3.0-alt1
Executing(%doc): /bin/sh -e /usr/src/tmp/rpm-tmp.31221
+ umask 022
+ /bin/mkdir -p /usr/src/RPM/BUILD
+ cd /usr/src/RPM/BUILD
+ cd pymol-2.3.0
+ DOCDIR=/usr/src/tmp/pymol-buildroot/usr/share/doc/pymol-devel-2.3.0
+ export DOCDIR
+ rm -rf /usr/src/tmp/pymol-buildroot/usr/share/doc/pymol-devel-2.3.0
+ /bin/mkdir -p /usr/src/tmp/pymol-buildroot/usr/share/doc/pymol-devel-2.3.0
+ cp -prL DEVELOPERS PACKAGING /usr/src/tmp/pymol-buildroot/usr/share/doc/pymol-devel-2.3.0
+ chmod -R go-w /usr/src/tmp/pymol-buildroot/usr/share/doc/pymol-devel-2.3.0
+ chmod -R a+rX /usr/src/tmp/pymol-buildroot/usr/share/doc/pymol-devel-2.3.0
+ exit 0
Finding Provides (using /usr/lib/rpm/find-provides)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.RznpHb
find-provides: running scripts (alternatives,debuginfo,gir,lib,pam,perl,pkgconfig,python,shell,typelib)
Finding Requires (using /usr/lib/rpm/find-requires)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.G7VmHh
find-requires: running scripts (cpp,debuginfo,files,gir-js,gir-python,gir,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks,systemd-services,typelib)
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/P.h:20:9: fatal error: os_python.h: No such file or directory
#include"os_python.h"
^~~~~~~~~~~~~
compilation terminated.
cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/P.h: cpp failed, trying c++ mode
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/P.h:20:9: fatal error: os_python.h: No such file or directory
#include"os_python.h"
^~~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/P.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Lex.h:11:10: fatal error: OVLexicon.h: No such file or directory
#include "OVLexicon.h"
^~~~~~~~~~~~~
compilation terminated.
cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Lex.h: cpp failed, trying c++ mode
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Lex.h:11:10: fatal error: OVLexicon.h: No such file or directory
#include "OVLexicon.h"
^~~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Lex.h: cpp failed
In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Vector.h:21,
from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Map.h:24:
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:123:10: fatal error: ov_types.h: No such file or directory
#include "ov_types.h"
^~~~~~~~~~~~
compilation terminated.
cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Map.h: cpp failed, trying c++ mode
In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Vector.h:21,
from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Map.h:24:
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:123:10: fatal error: ov_types.h: No such file or directory
#include "ov_types.h"
^~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Map.h: cpp failed
In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/vla.h:7:
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/MemoryDebug.h:21:10: fatal error: vector: No such file or directory
#include <vector>
^~~~~~~~
compilation terminated.
cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/vla.h: cpp failed, trying c++ mode
In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_std.h:21,
from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/MemoryDebug.h:23,
from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/vla.h:7:
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:123:10: fatal error: ov_types.h: No such file or directory
#include "ov_types.h"
^~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/vla.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/CGO.h:20:9: fatal error: Base.h: No such file or directory
#include"Base.h"
^~~~~~~~
compilation terminated.
cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/CGO.h: cpp failed, trying c++ mode
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/CGO.h:20:9: fatal error: Base.h: No such file or directory
#include"Base.h"
^~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/CGO.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Pop.h:20:9: fatal error: Block.h: No such file or directory
#include"Block.h"
^~~~~~~~~
compilation terminated.
cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Pop.h: cpp failed, trying c++ mode
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Pop.h:20:9: fatal error: Block.h: No such file or directory
#include"Block.h"
^~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Pop.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Ray.h:20:10: fatal error: vector: No such file or directory
#include <vector>
^~~~~~~~
compilation terminated.
cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Ray.h: cpp failed, trying c++ mode
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Ray.h:22:9: fatal error: Base.h: No such file or directory
#include"Base.h"
^~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Ray.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Rep.h:20:9: fatal error: Base.h: No such file or directory
#include"Base.h"
^~~~~~~~
compilation terminated.
cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Rep.h: cpp failed, trying c++ mode
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Rep.h:20:9: fatal error: Base.h: No such file or directory
#include"Base.h"
^~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Rep.h: cpp failed
In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Seq.h:20:
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Ortho.h:28:10: fatal error: vector: No such file or directory
#include <vector>
^~~~~~~~
compilation terminated.
cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Seq.h: cpp failed, trying c++ mode
In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Seq.h:20:
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Ortho.h:32:9: fatal error: os_gl.h: No such file or directory
#include"os_gl.h"
^~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Seq.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer4/Cmd.h:20:9: fatal error: os_python.h: No such file or directory
#include"os_python.h"
^~~~~~~~~~~~~
compilation terminated.
cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer4/Cmd.h: cpp failed, trying c++ mode
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer4/Cmd.h:20:9: fatal error: os_python.h: No such file or directory
#include"os_python.h"
^~~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer4/Cmd.h: cpp failed
In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_limits.h:21,
from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Base.h:21:
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:123:10: fatal error: ov_types.h: No such file or directory
#include "ov_types.h"
^~~~~~~~~~~~
compilation terminated.
cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Base.h: cpp failed, trying c++ mode
In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_limits.h:21,
from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Base.h:21:
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:123:10: fatal error: ov_types.h: No such file or directory
#include "ov_types.h"
^~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Base.h: cpp failed
In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Util.h:21:
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:123:10: fatal error: ov_types.h: No such file or directory
#include "ov_types.h"
^~~~~~~~~~~~
compilation terminated.
cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Util.h: cpp failed, trying c++ mode
In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Util.h:21:
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:123:10: fatal error: ov_types.h: No such file or directory
#include "ov_types.h"
^~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Util.h: cpp failed
In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Word.h:22:
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Lex.h:11:10: fatal error: OVLexicon.h: No such file or directory
#include "OVLexicon.h"
^~~~~~~~~~~~~
compilation terminated.
cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Word.h: cpp failed, trying c++ mode
In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Word.h:22:
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Lex.h:11:10: fatal error: OVLexicon.h: No such file or directory
#include "OVLexicon.h"
^~~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Word.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Font.h:21:9: fatal error: PyMOLGlobals.h: No such file or directory
#include"PyMOLGlobals.h"
^~~~~~~~~~~~~~~~
compilation terminated.
cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Font.h: cpp failed, trying c++ mode
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Font.h:21:9: fatal error: PyMOLGlobals.h: No such file or directory
#include"PyMOLGlobals.h"
^~~~~~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Font.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Text.h:20:9: fatal error: PyMOLGlobals.h: No such file or directory
#include"PyMOLGlobals.h"
^~~~~~~~~~~~~~~~
compilation terminated.
cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Text.h: cpp failed, trying c++ mode
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Text.h:20:9: fatal error: PyMOLGlobals.h: No such file or directory
#include"PyMOLGlobals.h"
^~~~~~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Text.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/View.h:20:9: fatal error: os_python.h: No such file or directory
#include"os_python.h"
^~~~~~~~~~~~~
compilation terminated.
cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/View.h: cpp failed, trying c++ mode
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/View.h:20:9: fatal error: os_python.h: No such file or directory
#include"os_python.h"
^~~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/View.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer4/Menu.h:20:9: fatal error: os_python.h: No such file or directory
#include"os_python.h"
^~~~~~~~~~~~~
compilation terminated.
cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer4/Menu.h: cpp failed, trying c++ mode
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer4/Menu.h:20:9: fatal error: os_python.h: No such file or directory
#include"os_python.h"
^~~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer4/Menu.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer5/main.h:22:9: fatal error: os_python.h: No such file or directory
#include"os_python.h"
^~~~~~~~~~~~~
compilation terminated.
cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer5/main.h: cpp failed, trying c++ mode
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer5/main.h:22:9: fatal error: os_python.h: No such file or directory
#include"os_python.h"
^~~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer5/main.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Block.h:21:9: fatal error: utility: No such file or directory
#include<utility>
^~~~~~~~~
compilation terminated.
cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Block.h: cpp failed, trying c++ mode
In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Field.h:21:
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_python.h:34:9: fatal error: Python.h: No such file or directory
#include"Python.h"
^~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Field.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/MyPNG.h:24:10: fatal error: Image.h: No such file or directory
#include "Image.h"
^~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/MyPNG.h: cpp failed
In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_std.h:21,
from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/MemoryDebug.h:23,
from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/OOMac.h:22:
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:123:10: fatal error: ov_types.h: No such file or directory
#include "ov_types.h"
^~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/OOMac.h: cpp failed
In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_gl.h:4:
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:123:10: fatal error: ov_types.h: No such file or directory
#include "ov_types.h"
^~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_gl.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Basis.h:20:9: fatal error: Map.h: No such file or directory
#include"Map.h"
^~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Basis.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Color.h:20:9: fatal error: os_python.h: No such file or directory
#include"os_python.h"
^~~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Color.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Image.h:2:10: fatal error: LangUtil.h: No such file or directory
#include "LangUtil.h"
^~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Image.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Movie.h:21:9: fatal error: os_python.h: No such file or directory
#include"os_python.h"
^~~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Movie.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Ortho.h:32:9: fatal error: os_gl.h: No such file or directory
#include"os_gl.h"
^~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Ortho.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/PConv.h:20:9: fatal error: os_python.h: No such file or directory
#include"os_python.h"
^~~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/PConv.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Scene.h:21:9: fatal error: Base.h: No such file or directory
#include"Base.h"
^~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Scene.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/VFont.h:20:9: fatal error: os_python.h: No such file or directory
#include"os_python.h"
^~~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/VFont.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer4/PopUp.h:20:9: fatal error: os_python.h: No such file or directory
#include"os_python.h"
^~~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer4/PopUp.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer5/PyMOL.h:50:10: fatal error: OVreturns.h: No such file or directory
#include "OVreturns.h"
^~~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer5/PyMOL.h: cpp failed
In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Vector.h:21,
from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Sphere.h:21:
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:123:10: fatal error: ov_types.h: No such file or directory
#include "ov_types.h"
^~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Sphere.h: cpp failed
In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Vector.h:21:
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:123:10: fatal error: ov_types.h: No such file or directory
#include "ov_types.h"
^~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Vector.h: cpp failed
In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_std.h:21:
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:123:10: fatal error: ov_types.h: No such file or directory
#include "ov_types.h"
^~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_std.h: cpp failed
In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Wizard.h:20:
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Ortho.h:32:9: fatal error: os_gl.h: No such file or directory
#include"os_gl.h"
^~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Wizard.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepDot.h:20:9: fatal error: Rep.h: No such file or directory
#include"Rep.h"
^~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepDot.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/Sculpt.h:20:9: fatal error: Shaker.h: No such file or directory
#include"Shaker.h"
^~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/Sculpt.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer3/Editor.h:20:9: fatal error: Ortho.h: No such file or directory
#include"Ortho.h"
^~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer3/Editor.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer3/Seeker.h:20:9: fatal error: Ortho.h: No such file or directory
#include"Ortho.h"
^~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer3/Seeker.h: cpp failed
In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Vector.h:21,
from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Crystal.h:20:
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:123:10: fatal error: ov_types.h: No such file or directory
#include "ov_types.h"
^~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Crystal.h: cpp failed
In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Vector.h:21,
from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Map.h:24,
from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Isosurf.h:21:
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:123:10: fatal error: ov_types.h: No such file or directory
#include "ov_types.h"
^~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Isosurf.h: cpp failed
In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Vector.h:21,
from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Map.h:24,
from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Tetsurf.h:21:
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:123:10: fatal error: ov_types.h: No such file or directory
#include "ov_types.h"
^~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Tetsurf.h: cpp failed
In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_time.h:21:
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:123:10: fatal error: ov_types.h: No such file or directory
#include "ov_types.h"
^~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_time.h: cpp failed
In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_unix.h:21:
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:123:10: fatal error: ov_types.h: No such file or directory
#include "ov_types.h"
^~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_unix.h: cpp failed
In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/ButMode.h:20:
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Ortho.h:32:9: fatal error: os_gl.h: No such file or directory
#include"os_gl.h"
^~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/ButMode.h: cpp failed
In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Control.h:20:
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Ortho.h:32:9: fatal error: os_gl.h: No such file or directory
#include"os_gl.h"
^~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Control.h: cpp failed
In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Extrude.h:20:
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Ray.h:22:9: fatal error: Base.h: No such file or directory
#include"Base.h"
^~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Extrude.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Setting.h:23:9: fatal error: os_python.h: No such file or directory
#include"os_python.h"
^~~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Setting.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/DistSet.h:19:9: fatal error: Base.h: No such file or directory
#include"Base.h"
^~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/DistSet.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepMesh.h:20:9: fatal error: Rep.h: No such file or directory
#include"Rep.h"
^~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepMesh.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer3/SpecRec.h:3:9: fatal error: PyMOLObject.h: No such file or directory
#include"PyMOLObject.h"
^~~~~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer3/SpecRec.h: cpp failed
In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Vector.h:21,
from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Triangle.h:21:
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:123:10: fatal error: ov_types.h: No such file or directory
#include "ov_types.h"
^~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Triangle.h: cpp failed
In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_numpy.h:4:
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_python.h:34:9: fatal error: Python.h: No such file or directory
#include"Python.h"
^~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_numpy.h: cpp failed
In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_types.h:21:
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:123:10: fatal error: ov_types.h: No such file or directory
#include "ov_types.h"
^~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_types.h: cpp failed
In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/FontGLUT.h:21:
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Font.h:21:9: fatal error: PyMOLGlobals.h: No such file or directory
#include"PyMOLGlobals.h"
^~~~~~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/FontGLUT.h: cpp failed
In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/FontType.h:21:
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Font.h:21:9: fatal error: PyMOLGlobals.h: No such file or directory
#include"PyMOLGlobals.h"
^~~~~~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/FontType.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/SceneDef.h:21:9: fatal error: Base.h: No such file or directory
#include"Base.h"
^~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/SceneDef.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/SceneRay.h:21:9: fatal error: Base.h: No such file or directory
#include"Base.h"
^~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/SceneRay.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Symmetry.h:23:9: fatal error: Crystal.h: No such file or directory
#include"Crystal.h"
^~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Symmetry.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/TypeFace.h:20:10: fatal error: PyMOLGlobals.h: No such file or directory
#include "PyMOLGlobals.h"
^~~~~~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/TypeFace.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/AtomInfo.h:22:9: fatal error: Rep.h: No such file or directory
#include"Rep.h"
^~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/AtomInfo.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/CoordSet.h:20:9: fatal error: os_python.h: No such file or directory
#include"os_python.h"
^~~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/CoordSet.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/MolV3000.h:7:10: fatal error: PyMOLGlobals.h: No such file or directory
#include "PyMOLGlobals.h"
^~~~~~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/MolV3000.h: cpp failed
In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepAngle.h:20:
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/DistSet.h:19:9: fatal error: Base.h: No such file or directory
#include"Base.h"
^~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepAngle.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepLabel.h:20:9: fatal error: Rep.h: No such file or directory
#include"Rep.h"
^~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepLabel.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer3/Selector.h:20:9: fatal error: os_python.h: No such file or directory
#include"os_python.h"
^~~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer3/Selector.h: cpp failed
In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_gl.h:4,
from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/ShaderMgr.h:19:
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:123:10: fatal error: ov_types.h: No such file or directory
#include "ov_types.h"
^~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/ShaderMgr.h: cpp failed
In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_limits.h:21:
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:123:10: fatal error: ov_types.h: No such file or directory
#include "ov_types.h"
^~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_limits.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:123:10: fatal error: ov_types.h: No such file or directory
#include "ov_types.h"
^~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_python.h:34:9: fatal error: Python.h: No such file or directory
#include"Python.h"
^~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_python.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Character.h:20:10: fatal error: Pixmap.h: No such file or directory
#include "Pixmap.h"
^~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Character.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/PConvArgs.h:11:10: fatal error: os_python.h: No such file or directory
#include "os_python.h"
^~~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/PConvArgs.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/ScrollBar.h:20:10: fatal error: PyMOLGlobals.h: No such file or directory
#include "PyMOLGlobals.h"
^~~~~~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/ScrollBar.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/GadgetSet.h:20:9: fatal error: Rep.h: No such file or directory
#include"Rep.h"
^~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/GadgetSet.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectCGO.h:20:9: fatal error: os_python.h: No such file or directory
#include"os_python.h"
^~~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectCGO.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectMap.h:20:9: fatal error: os_python.h: No such file or directory
#include"os_python.h"
^~~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectMap.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepRibbon.h:20:9: fatal error: Rep.h: No such file or directory
#include"Rep.h"
^~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepRibbon.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepSphere.h:20:9: fatal error: Rep.h: No such file or directory
#include"Rep.h"
^~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepSphere.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer3/Executive.h:20:9: fatal error: os_python.h: No such file or directory
#include"os_python.h"
^~~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer3/Executive.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer5/TestPyMOL.h:20:9: fatal error: PyMOLGlobals.h: No such file or directory
#include"PyMOLGlobals.h"
^~~~~~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer5/TestPyMOL.h: cpp failed
In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_std.h:21,
from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/MemoryDebug.h:23,
from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/ListMacros.h:24:
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:123:10: fatal error: ov_types.h: No such file or directory
#include "ov_types.h"
^~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/ListMacros.h: cpp failed
In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/MmodTyping.h:7:
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/AtomInfo.h:22:9: fatal error: Rep.h: No such file or directory
#include"Rep.h"
^~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/MmodTyping.h: cpp failed
In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/Mol2Typing.h:7:
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectMolecule.h:22:9: fatal error: os_python.h: No such file or directory
#include"os_python.h"
^~~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/Mol2Typing.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectDist.h:20:9: fatal error: PyMOLObject.h: No such file or directory
#include"PyMOLObject.h"
^~~~~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectDist.h: cpp failed
In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectMesh.h:20:
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectMap.h:20:9: fatal error: os_python.h: No such file or directory
#include"os_python.h"
^~~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectMesh.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepCartoon.h:20:9: fatal error: Rep.h: No such file or directory
#include"Rep.h"
^~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepCartoon.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepCylBond.h:20:9: fatal error: Rep.h: No such file or directory
#include"Rep.h"
^~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepCylBond.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepSurface.h:20:9: fatal error: Rep.h: No such file or directory
#include"Rep.h"
^~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepSurface.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer3/MovieScene.h:10:10: fatal error: os_python.h: No such file or directory
#include "os_python.h"
^~~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer3/MovieScene.h: cpp failed
In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_std.h:21,
from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/MemoryDebug.h:23:
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:123:10: fatal error: ov_types.h: No such file or directory
#include "ov_types.h"
^~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/MemoryDebug.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/PyMOLObject.h:23:9: fatal error: Base.h: No such file or directory
#include"Base.h"
^~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/PyMOLObject.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/CifBondDict.h:18:10: fatal error: os_std.h: No such file or directory
#include "os_std.h"
^~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/CifBondDict.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectGroup.h:20:9: fatal error: os_python.h: No such file or directory
#include"os_python.h"
^~~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectGroup.h: cpp failed
In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectSlice.h:20:
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectMap.h:20:9: fatal error: os_python.h: No such file or directory
#include"os_python.h"
^~~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectSlice.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepDihedral.h:20:9: fatal error: Rep.h: No such file or directory
#include"Rep.h"
^~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepDihedral.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepDistDash.h:20:9: fatal error: Rep.h: No such file or directory
#include"Rep.h"
^~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepDistDash.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepWireBond.h:20:9: fatal error: Rep.h: No such file or directory
#include"Rep.h"
^~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepWireBond.h: cpp failed
In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/SculptCache.h:20:
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/Sculpt.h:20:9: fatal error: Shaker.h: No such file or directory
#include"Shaker.h"
^~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/SculptCache.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer3/SelectorDef.h:9:10: fatal error: os_std.h: No such file or directory
#include "os_std.h"
^~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer3/SelectorDef.h: cpp failed
In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_gl.h:4,
from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/GraphicsUtil.h:3:
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:123:10: fatal error: ov_types.h: No such file or directory
#include "ov_types.h"
^~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/GraphicsUtil.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/ScenePicking.h:20:9: fatal error: Base.h: No such file or directory
#include"Base.h"
^~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/ScenePicking.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectGadget.h:20:9: fatal error: os_python.h: No such file or directory
#include"os_python.h"
^~~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectGadget.h: cpp failed
In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectVolume.h:19:
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectMap.h:20:9: fatal error: os_python.h: No such file or directory
#include"os_python.h"
^~~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectVolume.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepDistLabel.h:20:9: fatal error: Rep.h: No such file or directory
#include"Rep.h"
^~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepDistLabel.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepEllipsoid.h:20:9: fatal error: Rep.h: No such file or directory
#include"Rep.h"
^~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepEllipsoid.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepNonbonded.h:20:9: fatal error: Rep.h: No such file or directory
#include"Rep.h"
^~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepNonbonded.h: cpp failed
In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_gl.h:4,
from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/GraphicsUtil.h:3,
from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/GenericBuffer.h:3:
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:123:10: fatal error: ov_types.h: No such file or directory
#include "ov_types.h"
^~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/GenericBuffer.h: cpp failed
In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/HydrogenAdder.h:3:
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectMolecule.h:22:9: fatal error: os_python.h: No such file or directory
#include"os_python.h"
^~~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/HydrogenAdder.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectSurface.h:20:9: fatal error: os_gl.h: No such file or directory
#include"os_gl.h"
^~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectSurface.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer3/AtomIterators.h:10:10: fatal error: PyMOLGlobals.h: No such file or directory
#include "PyMOLGlobals.h"
^~~~~~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer3/AtomIterators.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer3/PlugIOManager.h:21:10: fatal error: PyMOLGlobals.h: No such file or directory
#include "PyMOLGlobals.h"
^~~~~~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer3/PlugIOManager.h: cpp failed
In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_proprietary.h:20:
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:123:10: fatal error: ov_types.h: No such file or directory
#include "ov_types.h"
^~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_proprietary.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectCallback.h:20:9: fatal error: os_python.h: No such file or directory
#include"os_python.h"
^~~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectCallback.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectMolecule.h:22:9: fatal error: os_python.h: No such file or directory
#include"os_python.h"
^~~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectMolecule.h: cpp failed
In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/AssemblyHelpers.h:11:
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/AtomInfo.h:22:9: fatal error: Rep.h: No such file or directory
#include"Rep.h"
^~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/AssemblyHelpers.h: cpp failed
In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/AtomInfoHistory.h:22:
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/AtomInfo.h:22:9: fatal error: Rep.h: No such file or directory
#include"Rep.h"
^~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/AtomInfoHistory.h: cpp failed
In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/BondTypeHistory.h:20:
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/AtomInfo.h:22:9: fatal error: Rep.h: No such file or directory
#include"Rep.h"
^~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/BondTypeHistory.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectAlignment.h:20:9: fatal error: os_python.h: No such file or directory
#include"os_python.h"
^~~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectAlignment.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/SideChainHelper.h:8:10: fatal error: PyMOLGlobals.h: No such file or directory
#include "PyMOLGlobals.h"
^~~~~~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/SideChainHelper.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectGadgetRamp.h:20:9: fatal error: os_python.h: No such file or directory
#include"os_python.h"
^~~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectGadgetRamp.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer3/MaeExportHelpers.h:9:10: fatal error: os_std.h: No such file or directory
#include "os_std.h"
^~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer3/MaeExportHelpers.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer3/MoleculeExporter.h:7:10: fatal error: os_python.h: No such file or directory
#include "os_python.h"
^~~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer3/MoleculeExporter.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepNonbondedSphere.h:20:9: fatal error: Rep.h: No such file or directory
#include"Rep.h"
^~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepNonbondedSphere.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/layer3/CifDataValueFormatter.h:12:10: fatal error: os_std.h: No such file or directory
#include "os_std.h"
^~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer3/CifDataValueFormatter.h: cpp failed
In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/champ/champ.h:20:
/usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/champ/os_python.h:19:9: fatal error: Python.h: No such file or directory
#include"Python.h"
^~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/champ/champ.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/champ/os_python.h:19:9: fatal error: Python.h: No such file or directory
#include"Python.h"
^~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/champ/os_python.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:49:10: fatal error: molfile_plugin.h: No such file or directory
#include "molfile_plugin.h" // needed for molfile return codes etc
^~~~~~~~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:30:10: fatal error: molfile_plugin.h: No such file or directory
#include "molfile_plugin.h"
^~~~~~~~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:46:10: fatal error: molfile_plugin.h: No such file or directory
#include "molfile_plugin.h" // needed for molfile return codes etc
^~~~~~~~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:16:10: fatal error: molfile_plugin.h: No such file or directory
#include "molfile_plugin.h"
^~~~~~~~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h: cpp failed
/usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/uiuc/plugins/molfile_plugin/src/gaussianplugin.h:27:10: fatal error: molfile_plugin.h: No such file or directory
#include "molfile_plugin.h"
^~~~~~~~~~~~~~~~~~
compilation terminated.
cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/uiuc/plugins/molfile_plugin/src/gaussianplugin.h: cpp failed
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/cyg: skipping sys
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/headerTest.py: skipping headering
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/headerTest.py: skipping sys
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/B01.py: skipping sys
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/B02.py: skipping sys
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/B03.py: skipping sys
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/B04.py: skipping sys
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/B05.py: skipping sys
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/B06.py: skipping sys
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/B07.py: skipping sys
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/B08.py: skipping sys
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/B09.py: skipping sys
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/B10.py: skipping sys
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/inp/B11.py: skipping sys
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/run: skipping sys
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/show: skipping sys
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/trim.py: skipping sys
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/win.py: skipping sys
shebang.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/test/vdiff: /bin/csh -> /bin/csh (raw, not installed)
Requires: python-module-pymol = 2.3.0-alt1, python2.7(pymol), /bin/csh, /usr/bin/python, /usr/lib/python2.7/site-packages, libmsgpack-devel, python-modules, python2.7(chempy)
Obsoletes: libpymol-devel
Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.QsdduU
Processing files: python-module-pymol-2.3.0-alt1
Finding Provides (using /usr/lib/rpm/find-provides)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.9tO5DU
find-provides: running scripts (alternatives,debuginfo,gir,lib,pam,perl,pkgconfig,python,shell,typelib)
Finding Requires (using /usr/lib/rpm/find-requires)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.xSwHd8
find-requires: running scripts (cpp,debuginfo,files,gir-js,gir-python,gir,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks,systemd-services,typelib)
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/TextEditor.py: skipping sys
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/TextEditor.py: line=13 IGNORE (for REQ=slight and deep=8) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/TextEditor.py: line=14 IGNORE (for REQ=slight and deep=8) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/TextEditor.py: line=16 IGNORE (for REQ=slight and deep=8) module=PyQt5
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/TextEditor.py: line=155 IGNORE (for REQ=slight and deep=12) module=pymol
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/advanced_settings_gui.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/advanced_settings_gui.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/advanced_settings_gui.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/advanced_settings_gui.py: line=44 IGNORE (for REQ=slight and deep=11) module=textwrap
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/builder.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/builder.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/builder.py: line=10 possible relative import from ., UNIMPLEMENTED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/builder.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/builder.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/builder.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/builder.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/builder.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/builder.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/file_dialogs.py: skipping sys
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/file_dialogs.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/file_dialogs.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/file_dialogs.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/file_dialogs.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/file_dialogs.py: line=12 IGNORE (for REQ=slight and deep=8) module=urllib
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/file_dialogs.py: line=14 IGNORE (for REQ=slight and deep=8) module=urllib
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/file_dialogs.py: line=137 IGNORE (for REQ=slight and deep=8) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/file_dialogs.py: line=191 IGNORE (for REQ=slight and deep=8) module=numpy
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/file_dialogs.py: line=192 IGNORE (for REQ=slight and deep=8) module=difflib
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/file_dialogs.py: line=193 IGNORE (for REQ=slight and deep=8) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/file_dialogs.py: line=373 IGNORE (for REQ=slight and deep=8) module=json
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/file_dialogs.py: line=392 IGNORE (for REQ=slight and deep=12) module=lxml
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/file_dialogs.py: line=394 IGNORE (for REQ=slight and deep=12) module=xml
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/file_dialogs.py: line=573 IGNORE (for REQ=slight and deep=12) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/file_dialogs.py: line=669 IGNORE (for REQ=slight and deep=8) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/file_dialogs.py: line=694 IGNORE (for REQ=slight and deep=20) module=pymol
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/keymapping.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/mimic_pmg_tk.py: skipping sys
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/mimic_pmg_tk.py: line=18 IGNORE (for REQ=slight and deep=12) module=Tkinter
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/mimic_pmg_tk.py: line=20 IGNORE (for REQ=slight and deep=12) module=tkinter
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/mimic_pmg_tk.py: line=29 IGNORE (for REQ=slight and deep=12) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/mimic_pmg_tk.py: line=75 IGNORE (for REQ=slight and deep=19) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/mimic_pmg_tk.py: line=78 IGNORE (for REQ=slight and deep=19) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/mimic_pmg_tk.py: line=107 IGNORE (for REQ=slight and deep=16) module=pmg_tk
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/mimic_pmg_tk.py: line=139 IGNORE (for REQ=slight and deep=11) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/mimic_pmg_tk.py: line=148 IGNORE (for REQ=slight and deep=16) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/mimic_pmg_tk.py: line=170 IGNORE (for REQ=slight and deep=16) module=Pmw
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/mimic_tk.py: skipping sys
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/mimic_tk.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/mimic_tk.py: line=74 IGNORE (for REQ=slight and deep=11) module=collections
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/mimic_tk.py: line=148 IGNORE (for REQ=slight and deep=19) module=importlib
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/mimic_tk.py: line=156 IGNORE (for REQ=slight and deep=19) module=importlib
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/properties_dialog.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/properties_dialog.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/properties_dialog.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/properties_dialog.py: line=34 IGNORE (for REQ=slight and deep=8) module=pymol
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/pymol_gl_widget.py: skipping sys
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/pymol_gl_widget.py: hiding pymol2, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/pymol_gl_widget.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/pymol_gl_widget.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/pymol_gl_widget.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/pymol_gl_widget.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/pymol_gl_widget.py: line=14 possible relative import from ., UNIMPLEMENTED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/pymol_gl_widget.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/pymol_gl_widget.py: line=27 IGNORE (for REQ=slight and deep=8) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/pymol_gl_widget.py: line=56 IGNORE (for REQ=slight and deep=11) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/pymol_gl_widget.py: line=85 IGNORE (for REQ=slight and deep=11) module=pcatch
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/pymol_qt_gui.py: skipping sys
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/pymol_qt_gui.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/pymol_qt_gui.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/pymol_qt_gui.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/pymol_qt_gui.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/pymol_qt_gui.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/pymol_qt_gui.py: line=22 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/pymol_qt_gui.py: line=23 possible relative import from ., UNIMPLEMENTED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/pymol_qt_gui.py: hiding pmg_qt, which SEEMS TO BE SELF-SATISFIED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/pymol_qt_gui.py: line=37 IGNORE (for REQ=slight and deep=7) module=pmg_qt
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/pymol_qt_gui.py: line=490 IGNORE (for REQ=slight and deep=11) module=importlib
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/pymol_qt_gui.py: line=597 IGNORE (for REQ=slight and deep=11) module=pmg_qt
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/pymol_qt_gui.py: line=598 IGNORE (for REQ=slight and deep=11) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/pymol_qt_gui.py: line=609 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/pymol_qt_gui.py: line=610 IGNORE (for REQ=slight and deep=11) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/pymol_qt_gui.py: line=841 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/pymol_qt_gui.py: line=912 IGNORE (for REQ=slight and deep=12) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/pymol_qt_gui.py: line=913 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/pymol_qt_gui.py: line=931 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/pymol_qt_gui.py: line=1102 IGNORE (for REQ=slight and deep=8) module=tempfile
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/pymol_qt_gui.py: line=1132 IGNORE (for REQ=slight and deep=8) module=traceback
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/pymol_qt_gui.py: line=1147 IGNORE (for REQ=slight and deep=12) module=ctypes
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/pymol_qt_gui.py: line=1163 IGNORE (for REQ=slight and deep=13) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/pymol_qt_gui.py: line=1167 IGNORE (for REQ=slight and deep=8) module=pymol
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/syntax/__init__.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/syntax/pml.py: line=4 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/syntax/pml.py: line=6 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/syntax/pml.py: line=39 IGNORE (for REQ=slight and deep=11) module=re
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/syntax/pml.py: line=40 IGNORE (for REQ=slight and deep=11) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/syntax/pml.py: line=41 possible relative import from ., UNIMPLEMENTED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/syntax/pmlparser.py: skipping sys
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/syntax/pmlparser.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/syntax/python.py: line=7 possible relative import from ., UNIMPLEMENTED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/volume.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/volume.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/volume.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_qt/volume.py: line=761 IGNORE (for REQ=slight and deep=11) module=random
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/Qt/__init__.py: line=19 IGNORE (for REQ=slight and deep=8) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/Qt/__init__.py: line=26 IGNORE (for REQ=slight and deep=12) module=PyQt5
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/Qt/__init__.py: line=34 IGNORE (for REQ=slight and deep=12) module=PySide2
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/Qt/__init__.py: line=43 IGNORE (for REQ=slight and deep=12) module=PyQt4
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/Qt/__init__.py: line=51 IGNORE (for REQ=slight and deep=12) module=PySide
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/Qt/utils.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/Qt/utils.py: line=224 IGNORE (for REQ=slight and deep=8) module=os
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/Qt/utils.py: line=224 IGNORE (for REQ=slight and deep=8) module=re
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/Qt/utils.py: line=244 IGNORE (for REQ=slight and deep=8) module=sys
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/Qt/utils.py: line=272 IGNORE (for REQ=slight and deep=12) module=pyside2uic
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/Qt/utils.py: line=274 IGNORE (for REQ=slight and deep=12) module=pysideuic
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/Qt/utils.py: line=276 IGNORE (for REQ=slight and deep=8) module=io
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/Qt/utils.py: line=318 IGNORE (for REQ=slight and deep=15) module=traceback
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/__init__.py: skipping sys
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/__init__.py: hiding __main__, which SEEMS TO BE SELF-SATISFIED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/__init__.py: line=64 IGNORE (for REQ=slight and deep=8) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/__init__.py: line=78 IGNORE (for REQ=slight and deep=8) module=string
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/__init__.py: line=87 IGNORE (for REQ=slight and deep=8) module=_thread
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/__init__.py: line=89 IGNORE (for REQ=slight and deep=8) module=thread
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/__init__.py: line=98 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/__init__.py: line=258 IGNORE (for REQ=slight and deep=12) module=socket
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/__init__.py: line=359 IGNORE (for REQ=slight and deep=12) module=multiprocessing
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/__init__.py: line=392 IGNORE (for REQ=slight and deep=16) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/__init__.py: line=408 IGNORE (for REQ=slight and deep=8) module=pymol2
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/__init__.py: line=443 IGNORE (for REQ=slight and deep=16) module=pmg_qt
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/__init__.py: line=461 IGNORE (for REQ=slight and deep=8) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/__init__.py: line=576 possible relative import from ., UNIMPLEMENTED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/__init__.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/__init__.py: line=583 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/__init__.py: line=588 IGNORE (for REQ=slight and deep=8) module=epymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/__main__.py: line=9 IGNORE (for REQ=slight and deep=8) module=pymol
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/_gui.py: skipping sys
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/_gui.py: line=42 IGNORE (for REQ=slight and deep=11) module=subprocess
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/_gui.py: line=42 IGNORE (for REQ=slight and deep=11) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/_gui.py: line=995 IGNORE (for REQ=slight and deep=15) module=sqlite3
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=4 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=31 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=32 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=56 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=62 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=63 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=78 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=79 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=90 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=155 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=163 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=164 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=181 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=182 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=252 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=255 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=262 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=270 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=271 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=282 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=298 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=305 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=309 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=310 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=342 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=343 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=398 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=399 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=416 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=421 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=422 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=431 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=445 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=449 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=452 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=462 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=463 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/api.py: line=464 possible relative import from ., UNIMPLEMENTED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cgo.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cgo.py: line=22 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cgo.py: line=179 IGNORE (for REQ=slight and deep=16) module=urllib
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cgo.py: line=181 IGNORE (for REQ=slight and deep=16) module=urllib
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cgo.py: line=398 IGNORE (for REQ=slight and deep=8) module=math
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cgo.py: line=467 IGNORE (for REQ=slight and deep=8) module=sys
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cgo.py: line=556 IGNORE (for REQ=slight and deep=12) module=functools
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cmd.py: line=95 IGNORE (for REQ=slight and deep=8) module=sys
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cmd.py: line=103 IGNORE (for REQ=slight and deep=12) module=re
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cmd.py: line=104 IGNORE (for REQ=slight and deep=12) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cmd.py: line=105 IGNORE (for REQ=slight and deep=12) module=string
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cmd.py: line=106 IGNORE (for REQ=slight and deep=12) module=threading
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cmd.py: line=107 IGNORE (for REQ=slight and deep=12) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cmd.py: line=108 IGNORE (for REQ=slight and deep=12) module=os
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cmd.py: line=109 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cmd.py: line=110 IGNORE (for REQ=slight and deep=12) module=time
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cmd.py: line=114 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cmd.py: line=116 IGNORE (for REQ=slight and deep=12) module=chempy
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cmd.py: line=122 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cmd.py: line=123 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cmd.py: line=130 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cmd.py: line=131 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cmd.py: line=175 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cmd.py: line=181 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cmd.py: line=186 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cmd.py: line=187 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cmd.py: line=192 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cmd.py: line=235 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cmd.py: line=243 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cmd.py: line=247 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cmd.py: line=357 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cmd.py: line=365 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cmd.py: line=381 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/cmd.py: line=416 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/colorprinting.py: line=41 IGNORE (for REQ=slight and deep=8) module=sys
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/colorprinting.py: line=41 IGNORE (for REQ=slight and deep=8) module=traceback
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/colorramping.py: skipping sys
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/colorramping.py: line=81 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/colorramping.py: line=101 IGNORE (for REQ=slight and deep=16) module=random
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/colorramping.py: line=151 IGNORE (for REQ=slight and deep=12) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/colorramping.py: line=154 IGNORE (for REQ=slight and deep=20) module=Tkinter
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/colorramping.py: line=156 IGNORE (for REQ=slight and deep=20) module=tkinter
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/colorramping.py: line=166 IGNORE (for REQ=slight and deep=12) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/colorramping.py: line=188 IGNORE (for REQ=slight and deep=8) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/colorramping.py: line=194 IGNORE (for REQ=slight and deep=12) module=pmg_qt
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/colorramping.py: line=209 IGNORE (for REQ=slight and deep=8) module=pmg_tk
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/colorramping.py: line=211 IGNORE (for REQ=slight and deep=12) module=Tkinter
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/colorramping.py: line=213 IGNORE (for REQ=slight and deep=12) module=tkinter
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/commanding.py: line=19 IGNORE (for REQ=slight and deep=8) module=sys
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/commanding.py: line=21 IGNORE (for REQ=slight and deep=12) module=thread
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/commanding.py: line=22 IGNORE (for REQ=slight and deep=12) module=urllib2
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/commanding.py: line=24 IGNORE (for REQ=slight and deep=12) module=_thread
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/commanding.py: line=25 IGNORE (for REQ=slight and deep=12) module=urllib
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/commanding.py: line=26 IGNORE (for REQ=slight and deep=12) module=io
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/commanding.py: line=28 IGNORE (for REQ=slight and deep=8) module=re
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/commanding.py: line=29 IGNORE (for REQ=slight and deep=8) module=os
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/commanding.py: line=30 IGNORE (for REQ=slight and deep=8) module=time
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/commanding.py: line=31 IGNORE (for REQ=slight and deep=8) module=threading
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/commanding.py: line=32 IGNORE (for REQ=slight and deep=8) module=traceback
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/commanding.py: line=33 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/commanding.py: line=35 IGNORE (for REQ=slight and deep=8) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/commanding.py: line=37 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/commanding.py: line=234 IGNORE (for REQ=slight and deep=12) module=tempfile
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/commanding.py: line=235 IGNORE (for REQ=slight and deep=12) module=struct
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/commanding.py: line=663 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/completing.py: line=29 IGNORE (for REQ=slight and deep=8) module=os
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/completing.py: line=30 IGNORE (for REQ=slight and deep=8) module=chempy
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/completing.py: line=38 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/completing.py: line=60 IGNORE (for REQ=slight and deep=8) module=os
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/completing.py: line=60 IGNORE (for REQ=slight and deep=8) module=pymol
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/computing.py: skipping sys
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/computing.py: line=19 possible relative import from ., UNIMPLEMENTED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/computing.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/computing.py: line=30 IGNORE (for REQ=slight and deep=8) module=chempy
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/computing.py: line=98 IGNORE (for REQ=slight and deep=15) module=freemol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/constants.py: line=6 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/constants.py: line=8 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/constants.py: line=265 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/contrib/__init__.py: line=11 IGNORE (for REQ=slight and deep=8) module=Image
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/controlling.py: line=19 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/controlling.py: line=20 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/controlling.py: line=22 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/controlling.py: line=26 IGNORE (for REQ=slight and deep=12) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/controlling.py: line=28 IGNORE (for REQ=slight and deep=12) module=shortcut
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/creating.py: line=19 IGNORE (for REQ=slight and deep=8) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/creating.py: line=20 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/creating.py: line=21 IGNORE (for REQ=slight and deep=8) module=traceback
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/creating.py: line=23 IGNORE (for REQ=slight and deep=8) module=re
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/creating.py: line=24 IGNORE (for REQ=slight and deep=8) module=gzip
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/creating.py: line=25 IGNORE (for REQ=slight and deep=8) module=os
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/creating.py: line=26 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/creating.py: line=30 IGNORE (for REQ=slight and deep=8) module=tempfile
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/creating.py: line=31 IGNORE (for REQ=slight and deep=8) module=sys
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/creating.py: line=33 IGNORE (for REQ=slight and deep=8) module=chempy
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/creating.py: line=231 possible relative import from ., UNIMPLEMENTED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/diagnosing.py: skipping sys
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/diagnosing.py: line=28 IGNORE (for REQ=slight and deep=8) module=platform
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/diagnosing.py: line=29 IGNORE (for REQ=slight and deep=8) module=os
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/diagnosing.py: line=30 IGNORE (for REQ=slight and deep=8) module=re
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/diagnosing.py: line=31 IGNORE (for REQ=slight and deep=8) module=glob
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/diagnosing.py: line=32 IGNORE (for REQ=slight and deep=8) module=time
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/diagnosing.py: line=33 IGNORE (for REQ=slight and deep=8) module=textwrap
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/diagnosing.py: line=34 IGNORE (for REQ=slight and deep=8) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/diagnosing.py: line=35 IGNORE (for REQ=slight and deep=8) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/diagnosing.py: line=57 IGNORE (for REQ=slight and deep=16) module=json
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/diagnosing.py: line=83 IGNORE (for REQ=slight and deep=12) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/editing.py: line=19 IGNORE (for REQ=slight and deep=8) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/editing.py: line=20 IGNORE (for REQ=slight and deep=8) module=math
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/editing.py: line=21 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/editing.py: line=23 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/editing.py: line=26 IGNORE (for REQ=slight and deep=8) module=chempy
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/editing.py: line=954 IGNORE (for REQ=slight and deep=12) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/editing.py: line=2697 IGNORE (for REQ=slight and deep=12) module=itertools
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/editing.py: line=2698 IGNORE (for REQ=slight and deep=12) module=string
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/editor.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/editor.py: line=6 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/editor.py: line=7 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/editor.py: line=10 possible relative import from ., UNIMPLEMENTED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/embed/__init__.py: hiding _cmd, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/embed/__init__.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/embed/epymol/__init__.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/embed/wxpymol/__init__.py: hiding _cmd, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/embed/wxpymol/__init__.py: hiding __main__, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/embed/wxpymol/__init__.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/embed/wxpymol/__init__.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/embed/wxpymol/__init__.py: line=296 IGNORE (for REQ=slight and deep=11) module=threading
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/experimenting.py: line=17 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/experimenting.py: line=18 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/experimenting.py: line=21 IGNORE (for REQ=slight and deep=8) module=threading
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/experimenting.py: line=22 IGNORE (for REQ=slight and deep=8) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/experimenting.py: line=23 IGNORE (for REQ=slight and deep=8) module=string
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/experimenting.py: line=89 IGNORE (for REQ=slight and deep=12) module=chempy
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/experimenting.py: line=121 IGNORE (for REQ=slight and deep=12) module=chempy
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/exporting.py: line=18 IGNORE (for REQ=slight and deep=8) module=os
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/exporting.py: line=19 IGNORE (for REQ=slight and deep=8) module=sys
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/exporting.py: line=21 IGNORE (for REQ=slight and deep=12) module=thread
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/exporting.py: line=23 IGNORE (for REQ=slight and deep=12) module=_thread
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/exporting.py: line=24 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/exporting.py: line=25 IGNORE (for REQ=slight and deep=8) module=re
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/exporting.py: line=26 IGNORE (for REQ=slight and deep=8) module=copy
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/exporting.py: line=28 IGNORE (for REQ=slight and deep=8) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/exporting.py: line=30 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/exporting.py: line=31 IGNORE (for REQ=slight and deep=8) module=chempy
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/exporting.py: line=32 IGNORE (for REQ=slight and deep=8) module=chempy
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/exporting.py: line=33 IGNORE (for REQ=slight and deep=8) module=chempy
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/exporting.py: line=34 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/exporting.py: line=37 IGNORE (for REQ=slight and deep=8) module=traceback
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/exporting.py: line=210 IGNORE (for REQ=slight and deep=12) module=textwrap
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/exporting.py: line=211 IGNORE (for REQ=slight and deep=12) module=collections
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/exporting.py: line=466 IGNORE (for REQ=slight and deep=20) module=zlib
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/exporting.py: line=607 IGNORE (for REQ=slight and deep=12) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/exporting.py: line=719 IGNORE (for REQ=slight and deep=12) module=string
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/exporting.py: line=814 IGNORE (for REQ=slight and deep=12) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/exporting.py: line=857 IGNORE (for REQ=slight and deep=16) module=inspect
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/exporting.py: line=887 IGNORE (for REQ=slight and deep=20) module=gzip
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/exporting.py: line=892 IGNORE (for REQ=slight and deep=24) module=bz2
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/externing.py: line=19 IGNORE (for REQ=slight and deep=8) module=os
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/externing.py: line=20 IGNORE (for REQ=slight and deep=8) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/externing.py: line=21 IGNORE (for REQ=slight and deep=8) module=string
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/externing.py: line=22 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/externing.py: line=23 IGNORE (for REQ=slight and deep=8) module=threading
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/externing.py: line=25 IGNORE (for REQ=slight and deep=8) module=traceback
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/externing.py: line=27 IGNORE (for REQ=slight and deep=8) module=glob
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/externing.py: line=28 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/externing.py: line=33 IGNORE (for REQ=slight and deep=12) module=os
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/externing.py: line=35 IGNORE (for REQ=slight and deep=12) module=os
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/feedingback.py: skipping sys
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/feedingback.py: line=6 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/feedingback.py: line=7 possible relative import from ., UNIMPLEMENTED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/feedingback.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/fitting.py: line=20 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/fitting.py: line=21 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/fitting.py: line=22 IGNORE (for REQ=slight and deep=8) module=os
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/fitting.py: line=23 IGNORE (for REQ=slight and deep=8) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/fitting.py: line=25 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/fitting.py: line=106 IGNORE (for REQ=slight and deep=20) module=pprint
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/gui.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/gui.py: line=33 IGNORE (for REQ=slight and deep=12) module=pmg_qt
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/gui.py: line=39 IGNORE (for REQ=slight and deep=8) module=pymol
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/headering.py: skipping sys
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/headering.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/headering.py: line=9 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/headering.py: line=265 IGNORE (for REQ=slight and deep=11) module=shlex
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/helping.py: line=20 IGNORE (for REQ=slight and deep=8) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/helping.py: line=21 IGNORE (for REQ=slight and deep=8) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/helping.py: line=23 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/helping.py: line=306 IGNORE (for REQ=slight and deep=12) module=sys
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/importing.py: line=19 IGNORE (for REQ=slight and deep=8) module=re
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/importing.py: line=20 IGNORE (for REQ=slight and deep=8) module=os
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/importing.py: line=21 IGNORE (for REQ=slight and deep=8) module=sys
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/importing.py: line=22 IGNORE (for REQ=slight and deep=8) module=copy
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/importing.py: line=23 IGNORE (for REQ=slight and deep=8) module=traceback
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/importing.py: line=24 IGNORE (for REQ=slight and deep=8) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/importing.py: line=26 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/importing.py: line=27 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/importing.py: line=28 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/importing.py: line=31 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/importing.py: line=32 IGNORE (for REQ=slight and deep=8) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/importing.py: line=38 IGNORE (for REQ=slight and deep=8) module=chempy
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/importing.py: line=128 IGNORE (for REQ=slight and deep=16) module=zlib
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/importing.py: line=501 IGNORE (for REQ=slight and deep=28) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/importing.py: line=514 IGNORE (for REQ=slight and deep=16) module=urllib
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/importing.py: line=516 IGNORE (for REQ=slight and deep=16) module=urllib
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/importing.py: line=519 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/importing.py: line=587 IGNORE (for REQ=slight and deep=24) module=webbrowser
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/importing.py: line=789 IGNORE (for REQ=slight and deep=16) module=inspect
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/importing.py: line=1276 IGNORE (for REQ=slight and deep=12) module=string
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/importing.py: line=1525 IGNORE (for REQ=slight and deep=12) module=glob
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/importing.py: line=1549 IGNORE (for REQ=slight and deep=12) module=chempy
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/importing.py: line=1602 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/importing.py: line=1609 possible relative import from ., UNIMPLEMENTED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/internal.py: skipping sys
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/internal.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/internal.py: line=12 IGNORE (for REQ=slight and deep=8) module=thread
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/internal.py: line=13 IGNORE (for REQ=slight and deep=8) module=urllib2
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/internal.py: line=15 IGNORE (for REQ=slight and deep=8) module=_thread
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/internal.py: line=16 IGNORE (for REQ=slight and deep=8) module=urllib
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/internal.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/internal.py: line=24 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/internal.py: line=330 IGNORE (for REQ=slight and deep=12) module=io
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/internal.py: line=330 IGNORE (for REQ=slight and deep=12) module=gzip
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/internal.py: line=335 IGNORE (for REQ=slight and deep=12) module=bz2
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/invocation.py: line=116 IGNORE (for REQ=slight and deep=8) module=copy
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/invocation.py: line=117 IGNORE (for REQ=slight and deep=8) module=re
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/invocation.py: line=118 IGNORE (for REQ=slight and deep=8) module=os
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/invocation.py: line=119 IGNORE (for REQ=slight and deep=8) module=glob
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/invocation.py: line=120 IGNORE (for REQ=slight and deep=8) module=sys
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/invocation.py: line=121 IGNORE (for REQ=slight and deep=8) module=traceback
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/invocation.py: line=206 IGNORE (for REQ=slight and deep=24) module=_winreg
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/invocation.py: line=208 IGNORE (for REQ=slight and deep=24) module=winreg
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/invocation.py: line=269 IGNORE (for REQ=slight and deep=28) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/keyboard.py: line=1 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/keyboard.py: line=3 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/keyboard.py: line=143 IGNORE (for REQ=slight and deep=8) module=re
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/keywords.py: line=2 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/keywords.py: line=6 IGNORE (for REQ=slight and deep=8) module=pymol
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/lazyio.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/lazyio.py: line=15 IGNORE (for REQ=slight and deep=8) module=lxml
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/lazyio.py: line=17 IGNORE (for REQ=slight and deep=8) module=xml
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/lazyio.py: line=27 IGNORE (for REQ=slight and deep=8) module=chempy
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/lazyio.py: line=28 IGNORE (for REQ=slight and deep=8) module=collections
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/lazyio.py: line=160 IGNORE (for REQ=slight and deep=8) module=chempy
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/lazyio.py: line=234 IGNORE (for REQ=slight and deep=8) module=simplemmtf
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/locking.py: skipping sys
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/locking.py: line=4 IGNORE (for REQ=slight and deep=8) module=thread
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/locking.py: line=6 IGNORE (for REQ=slight and deep=8) module=_thread
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/locking.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/locking.py: line=12 possible relative import from ., UNIMPLEMENTED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/locking.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/m4x.py: line=26 possible relative import from ., UNIMPLEMENTED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/m4x.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/m4x.py: line=64 IGNORE (for REQ=slight and deep=8) module=os
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/menu.py: line=634 IGNORE (for REQ=slight and deep=8) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/menu.py: line=1310 IGNORE (for REQ=slight and deep=8) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/menu.py: line=1439 IGNORE (for REQ=slight and deep=8) module=pymol
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/monitoring.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/monitoring.py: skipping sys
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/morphing.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/movie.py: skipping sys
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/movie.py: line=666 IGNORE (for REQ=slight and deep=8) module=time
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/movie.py: line=666 IGNORE (for REQ=slight and deep=8) module=os
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/movie.py: line=694 IGNORE (for REQ=slight and deep=8) module=os
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/movie.py: line=725 IGNORE (for REQ=slight and deep=16) module=freemol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/movie.py: line=757 IGNORE (for REQ=slight and deep=12) module=subprocess
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/movie.py: line=774 IGNORE (for REQ=slight and deep=12) module=subprocess
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/movie.py: line=810 IGNORE (for REQ=slight and deep=8) module=distutils
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/movie.py: line=852 IGNORE (for REQ=slight and deep=8) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/movie.py: line=901 IGNORE (for REQ=slight and deep=16) module=freemol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/moving.py: line=17 IGNORE (for REQ=slight and deep=8) module=sys
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/moving.py: line=19 IGNORE (for REQ=slight and deep=12) module=thread
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/moving.py: line=21 IGNORE (for REQ=slight and deep=12) module=_thread
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/moving.py: line=23 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/moving.py: line=24 IGNORE (for REQ=slight and deep=8) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/moving.py: line=25 IGNORE (for REQ=slight and deep=8) module=re
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/moving.py: line=27 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/parser.py: line=33 IGNORE (for REQ=slight and deep=8) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/parser.py: line=34 IGNORE (for REQ=slight and deep=8) module=traceback
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/parser.py: line=35 IGNORE (for REQ=slight and deep=8) module=collections
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/parser.py: line=36 IGNORE (for REQ=slight and deep=8) module=re
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/parser.py: line=37 IGNORE (for REQ=slight and deep=8) module=glob
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/parser.py: line=38 IGNORE (for REQ=slight and deep=8) module=sys
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/parser.py: line=39 IGNORE (for REQ=slight and deep=8) module=os
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/parser.py: line=41 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/parser.py: line=42 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/parser.py: line=43 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/parser.py: line=483 IGNORE (for REQ=slight and deep=15) module=sys
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/parser.py: line=502 IGNORE (for REQ=slight and deep=23) module=time
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/parsing.py: line=68 IGNORE (for REQ=slight and deep=8) module=re
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/parsing.py: line=69 IGNORE (for REQ=slight and deep=8) module=sys
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/parsing.py: line=70 IGNORE (for REQ=slight and deep=8) module=threading
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/parsing.py: line=71 IGNORE (for REQ=slight and deep=8) module=types
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/parsing.py: line=72 IGNORE (for REQ=slight and deep=8) module=inspect
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/parsing.py: line=73 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/parsing.py: line=469 IGNORE (for REQ=slight and deep=12) module=__main__
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/parsing.py: line=470 IGNORE (for REQ=slight and deep=12) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/parsing.py: line=473 IGNORE (for REQ=slight and deep=16) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/parsing.py: line=525 IGNORE (for REQ=slight and deep=12) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/parsing.py: line=621 IGNORE (for REQ=slight and deep=8) module=pymol
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/__init__.py: skipping sys
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/__init__.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/__init__.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/__init__.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/__init__.py: line=16 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/__init__.py: line=73 IGNORE (for REQ=slight and deep=8) module=pprint
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/__init__.py: line=257 IGNORE (for REQ=slight and deep=11) module=time
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/__init__.py: line=278 IGNORE (for REQ=slight and deep=23) module=importlib
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/__init__.py: line=280 IGNORE (for REQ=slight and deep=23) module=__builtin__
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/__init__.py: line=320 IGNORE (for REQ=slight and deep=11) module=types
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/__init__.py: line=338 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/__init__.py: line=353 IGNORE (for REQ=slight and deep=19) module=shutil
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/__init__.py: line=378 IGNORE (for REQ=slight and deep=8) module=time
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/__init__.py: line=424 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/__init__.py: line=430 IGNORE (for REQ=slight and deep=12) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/installation.py: line=60 IGNORE (for REQ=slight and deep=12) module=distutils
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/installation.py: line=74 IGNORE (for REQ=slight and deep=8) module=re
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/installation.py: line=97 IGNORE (for REQ=slight and deep=12) module=zipfile
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/installation.py: line=100 IGNORE (for REQ=slight and deep=12) module=tarfile
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/installation.py: line=138 IGNORE (for REQ=slight and deep=8) module=tempfile
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/installation.py: line=148 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/installation.py: line=154 IGNORE (for REQ=slight and deep=8) module=sys
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/installation.py: line=156 IGNORE (for REQ=slight and deep=12) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/installation.py: line=168 IGNORE (for REQ=slight and deep=8) module=Pmw
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/installation.py: line=191 IGNORE (for REQ=slight and deep=8) module=shutil
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/installation.py: line=192 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/installation.py: line=193 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/installation.py: line=194 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/installation.py: line=254 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/installation.py: line=325 IGNORE (for REQ=slight and deep=16) module=traceback
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/installation.py: line=349 possible relative import from ., UNIMPLEMENTED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/legacysupport.py: skipping sys
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/legacysupport.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/legacysupport.py: line=32 IGNORE (for REQ=slight and deep=8) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/legacysupport.py: line=60 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/legacysupport.py: line=78 IGNORE (for REQ=slight and deep=12) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/legacysupport.py: line=82 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/legacysupport.py: line=86 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/legacysupport.py: line=98 IGNORE (for REQ=slight and deep=8) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/legacysupport.py: line=99 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/legacysupport.py: line=108 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/legacysupport.py: line=131 IGNORE (for REQ=slight and deep=16) module=Tkinter
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/legacysupport.py: line=133 IGNORE (for REQ=slight and deep=16) module=tkinter
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/legacysupport.py: line=138 IGNORE (for REQ=slight and deep=8) module=threading
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/legacysupport.py: line=143 IGNORE (for REQ=slight and deep=8) module=time
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/legacysupport.py: line=157 IGNORE (for REQ=slight and deep=15) module=tkMessageBox
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/legacysupport.py: line=159 IGNORE (for REQ=slight and deep=15) module=tkinter
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/legacysupport.py: line=160 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/legacysupport.py: line=174 IGNORE (for REQ=slight and deep=15) module=tkFileDialog
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/legacysupport.py: line=176 IGNORE (for REQ=slight and deep=15) module=tkinter
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui.py: skipping sys
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui.py: line=12 IGNORE (for REQ=slight and deep=8) module=Tkinter
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui.py: line=13 IGNORE (for REQ=slight and deep=8) module=tkSimpleDialog
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui.py: line=15 IGNORE (for REQ=slight and deep=8) module=tkinter
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui.py: line=16 IGNORE (for REQ=slight and deep=8) module=tkinter
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui.py: line=17 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui.py: line=18 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui.py: line=46 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui.py: line=118 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui.py: line=166 IGNORE (for REQ=slight and deep=11) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui.py: line=173 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui.py: line=194 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui.py: line=195 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui.py: line=199 IGNORE (for REQ=slight and deep=15) module=tempfile
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui.py: line=199 IGNORE (for REQ=slight and deep=15) module=shutil
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui.py: line=245 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui.py: line=261 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui.py: line=262 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui.py: line=266 IGNORE (for REQ=slight and deep=15) module=tempfile
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui.py: line=266 IGNORE (for REQ=slight and deep=15) module=shutil
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui.py: line=266 IGNORE (for REQ=slight and deep=15) module=os
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui.py: line=290 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui.py: line=297 IGNORE (for REQ=slight and deep=15) module=tempfile
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui.py: line=297 IGNORE (for REQ=slight and deep=15) module=shutil
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui.py: line=297 IGNORE (for REQ=slight and deep=15) module=os
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui.py: line=366 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui.py: line=378 IGNORE (for REQ=slight and deep=15) module=os
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui.py: line=379 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui.py: line=431 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui.py: line=473 possible relative import from ., UNIMPLEMENTED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui_qt.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui_qt.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui_qt.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui_qt.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui_qt.py: line=7 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui_qt.py: line=79 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui_qt.py: line=84 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui_qt.py: line=91 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui_qt.py: line=116 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui_qt.py: line=135 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui_qt.py: line=142 IGNORE (for REQ=slight and deep=11) module=sys
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui_qt.py: line=142 IGNORE (for REQ=slight and deep=11) module=tempfile
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui_qt.py: line=142 IGNORE (for REQ=slight and deep=11) module=shutil
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui_qt.py: line=142 IGNORE (for REQ=slight and deep=11) module=os
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui_qt.py: line=143 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui_qt.py: line=144 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui_qt.py: line=159 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui_qt.py: line=160 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui_qt.py: line=161 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui_qt.py: line=165 IGNORE (for REQ=slight and deep=11) module=tempfile
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui_qt.py: line=165 IGNORE (for REQ=slight and deep=11) module=shutil
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui_qt.py: line=165 IGNORE (for REQ=slight and deep=11) module=os
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui_qt.py: line=186 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui_qt.py: line=220 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui_qt.py: line=296 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui_qt.py: line=302 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui_qt.py: line=303 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui_qt.py: line=304 IGNORE (for REQ=slight and deep=11) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui_qt.py: line=308 IGNORE (for REQ=slight and deep=11) module=tempfile
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui_qt.py: line=308 IGNORE (for REQ=slight and deep=11) module=shutil
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/managergui_qt.py: line=378 possible relative import from ., UNIMPLEMENTED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/repository.py: skipping sys
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/repository.py: line=15 IGNORE (for REQ=slight and deep=8) module=urllib
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/repository.py: line=16 IGNORE (for REQ=slight and deep=8) module=urllib
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/repository.py: line=17 IGNORE (for REQ=slight and deep=8) module=urllib
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/repository.py: line=19 IGNORE (for REQ=slight and deep=8) module=urllib2
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/repository.py: line=20 IGNORE (for REQ=slight and deep=8) module=urlparse
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/repository.py: line=21 IGNORE (for REQ=slight and deep=8) module=urllib2
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/repository.py: line=23 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/repository.py: line=33 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/repository.py: line=88 IGNORE (for REQ=slight and deep=11) module=os
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/repository.py: line=109 IGNORE (for REQ=slight and deep=11) module=re
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/repository.py: line=118 IGNORE (for REQ=slight and deep=11) module=re
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/repository.py: line=159 IGNORE (for REQ=slight and deep=11) module=re
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/repository.py: line=176 IGNORE (for REQ=slight and deep=11) module=re
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/repository.py: line=211 IGNORE (for REQ=slight and deep=11) module=json
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/repository.py: line=221 IGNORE (for REQ=slight and deep=11) module=os
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/repository.py: line=233 IGNORE (for REQ=slight and deep=11) module=shutil
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/repository.py: line=239 IGNORE (for REQ=slight and deep=11) module=os
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/repository.py: line=270 IGNORE (for REQ=slight and deep=8) module=re
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/repository.py: line=270 IGNORE (for REQ=slight and deep=8) module=os
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/repository.py: line=271 IGNORE (for REQ=slight and deep=8) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/plugins/repository.py: line=369 IGNORE (for REQ=slight and deep=12) module=socket_hack
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/povray.py: line=17 IGNORE (for REQ=slight and deep=8) module=os
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/povray.py: line=18 IGNORE (for REQ=slight and deep=8) module=traceback
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/preset.py: line=16 possible relative import from ., UNIMPLEMENTED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/data/chempy/sidechains/generate1.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/data/chempy/sidechains/generate1.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
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/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/xmlrpc02.py: line=15 IGNORE (for REQ=slight and deep=8) module=xmlrpc
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/devel/xmlrpc02.py: line=99 IGNORE (for REQ=slight and deep=8) module=sys
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/launching/launch.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/launching/launch_demo.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/launching/launch_demo.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/launching/launch_no_tk.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/launching/launch_viewer1.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymol_path/examples/launching/launch_viewer2.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymolhttpd.py: skipping sys
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymolhttpd.py: line=20 IGNORE (for REQ=slight and deep=8) module=http
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymolhttpd.py: line=21 IGNORE (for REQ=slight and deep=8) module=io
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymolhttpd.py: line=22 IGNORE (for REQ=slight and deep=8) module=urllib
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymolhttpd.py: line=23 IGNORE (for REQ=slight and deep=8) module=urllib
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymolhttpd.py: line=25 IGNORE (for REQ=slight and deep=8) module=BaseHTTPServer
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymolhttpd.py: line=26 IGNORE (for REQ=slight and deep=8) module=StringIO
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymolhttpd.py: line=27 IGNORE (for REQ=slight and deep=8) module=urlparse
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymolhttpd.py: line=28 IGNORE (for REQ=slight and deep=8) module=urllib
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymolhttpd.py: line=36 IGNORE (for REQ=slight and deep=8) module=simplejson
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymolhttpd.py: line=38 IGNORE (for REQ=slight and deep=8) module=json
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymolhttpd.py: skipping sys
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/pymolhttpd.py: line=454 IGNORE (for REQ=slight and deep=19) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/querying.py: line=19 IGNORE (for REQ=slight and deep=8) module=time
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/querying.py: line=20 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/querying.py: line=21 IGNORE (for REQ=slight and deep=8) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/querying.py: line=23 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/querying.py: line=650 IGNORE (for REQ=slight and deep=20) module=re
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/querying.py: line=1713 IGNORE (for REQ=slight and deep=12) module=chempy
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/rpc.py: skipping sys
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/rpc.py: line=21 IGNORE (for REQ=slight and deep=8) module=SimpleXMLRPCServer
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/rpc.py: line=23 IGNORE (for REQ=slight and deep=8) module=xmlrpc
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/rpc.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/rpc.py: line=256 IGNORE (for REQ=slight and deep=8) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/rpc.py: line=280 IGNORE (for REQ=slight and deep=8) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/rpc.py: line=428 IGNORE (for REQ=slight and deep=12) module=os
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/rpc.py: line=445 IGNORE (for REQ=slight and deep=12) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/selecting.py: line=17 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/selecting.py: line=21 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/selecting.py: line=24 IGNORE (for REQ=slight and deep=8) module=pymol
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/seqalign.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/seqalign.py: line=22 IGNORE (for REQ=slight and deep=8) module=Bio
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/seqalign.py: line=23 IGNORE (for REQ=slight and deep=8) module=Bio
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/seqalign.py: line=24 IGNORE (for REQ=slight and deep=8) module=Bio
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/seqalign.py: line=87 IGNORE (for REQ=slight and deep=8) module=Bio
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/seqalign.py: line=129 IGNORE (for REQ=slight and deep=8) module=os
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/setting.py: line=19 IGNORE (for REQ=slight and deep=8) module=traceback
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/setting.py: line=20 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/setting.py: line=21 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/setting.py: line=23 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/shortcut.py: line=18 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/shortcut.py: line=19 possible relative import from ., UNIMPLEMENTED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/stereochemistry/__init__.py: skipping sys
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/stereochemistry/__init__.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/util.py: skipping sys
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/util.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/util.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/util.py: line=143 IGNORE (for REQ=slight and deep=8) module=collections
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/util.py: line=344 IGNORE (for REQ=slight and deep=8) module=chempy
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/util.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/util.py: line=821 IGNORE (for REQ=slight and deep=8) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/util.py: line=1574 IGNORE (for REQ=slight and deep=8) module=itertools
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/util.py: line=1633 IGNORE (for REQ=slight and deep=8) module=collections
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/viewing.py: line=19 IGNORE (for REQ=slight and deep=8) module=sys
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/viewing.py: line=21 IGNORE (for REQ=slight and deep=12) module=thread
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/viewing.py: line=23 IGNORE (for REQ=slight and deep=12) module=_thread
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/viewing.py: line=25 IGNORE (for REQ=slight and deep=8) module=threading
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/viewing.py: line=26 IGNORE (for REQ=slight and deep=8) module=traceback
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/viewing.py: line=27 IGNORE (for REQ=slight and deep=8) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/viewing.py: line=28 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/viewing.py: line=29 IGNORE (for REQ=slight and deep=8) module=copy
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/viewing.py: line=30 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/viewing.py: line=31 IGNORE (for REQ=slight and deep=8) module=re
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/viewing.py: line=34 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/viewing.py: line=1009 IGNORE (for REQ=slight and deep=12) module=os
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/viewing.py: line=1574 IGNORE (for REQ=slight and deep=16) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/viewing.py: line=2155 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/viewing.py: line=2384 possible relative import from ., UNIMPLEMENTED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/__init__.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/annotation.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/annotation.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/annotation.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/appearance.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/appearance.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/appearance.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/benchmark.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/benchmark.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/benchmark.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/box.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/box.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/box.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/box.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/charge.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/charge.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/charge.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/cleanup.py: skipping sys
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/cleanup.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/cleanup.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/cleanup.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/command.py: line=4 IGNORE (for REQ=slight and deep=8) module=itertools
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/command.py: line=6 IGNORE (for REQ=slight and deep=8) module=itertools
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/command.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/command.py: line=19 IGNORE (for REQ=slight and deep=11) module=inspect
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/demo.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/demo.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/demo.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/demo.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/demo.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/density.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/density.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/density.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/distance.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/distance.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/distance.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/dragging.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/dragging.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/dragging.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/fedora.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/fedora.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/fedora.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/filter.py: skipping sys
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/filter.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/filter.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/label.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/label.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/label.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/measurement.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/measurement.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/measurement.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/message.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/message.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/message.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/mutagenesis.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/mutagenesis.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/mutagenesis.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/nucmutagenesis.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/nucmutagenesis.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/nucmutagenesis.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/pair_fit.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/pair_fit.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/pair_fit.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/pseudoatom.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/pseudoatom.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/pseudoatom.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/renaming.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/renaming.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/renaming.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/sculpting.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/sculpting.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/sculpting.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/sculpting.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/security.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/security.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/security.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/stereodemo.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/stereodemo.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/stereodemo.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/stereodemo.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/stereodemo.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/stereodemo.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/stereodemo.py: line=99 IGNORE (for REQ=slight and deep=11) module=chempy
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/toggle.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/toggle.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizard/toggle.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizarding.py: line=19 IGNORE (for REQ=slight and deep=8) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizarding.py: line=20 IGNORE (for REQ=slight and deep=8) module=sys
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizarding.py: line=22 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizarding.py: line=27 IGNORE (for REQ=slight and deep=12) module=cPickle
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizarding.py: line=29 IGNORE (for REQ=slight and deep=12) module=pickle
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizarding.py: line=30 IGNORE (for REQ=slight and deep=8) module=traceback
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizarding.py: line=37 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizarding.py: line=53 IGNORE (for REQ=slight and deep=28) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/wizarding.py: line=190 IGNORE (for REQ=slight and deep=20) module=chempy
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/xray.py: line=23 IGNORE (for REQ=slight and deep=8) module=re
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/xray.py: line=46 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/xray.py: line=83 IGNORE (for REQ=slight and deep=8) module=re
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol/xwin.py: line=11 IGNORE (for REQ=slight and deep=12) module=subprocess
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol2/__init__.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol2/__init__.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol2/__init__.py: skipping sys
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol2/__init__.py: line=92 possible relative import from ., UNIMPLEMENTED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol2/cmd2.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol2/cmd2.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol2/cmd2.py: line=60 IGNORE (for REQ=slight and deep=11) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pymol2/cmd2.py: line=89 IGNORE (for REQ=slight and deep=11) module=pymol
Provides: python2.7-module-pymol = 2.3.0-alt1, python2.7(pymol), python2.7(pmg_qt), python2.7(pmg_qt.TextEditor), python2.7(pmg_qt.advanced_settings_gui), python2.7(pmg_qt.builder), python2.7(pmg_qt.file_dialogs), python2.7(pmg_qt.forms), python2.7(pmg_qt.keymapping), python2.7(pmg_qt.mimic_pmg_tk), python2.7(pmg_qt.mimic_tk), python2.7(pmg_qt.properties_dialog), python2.7(pmg_qt.pymol_gl_widget), python2.7(pmg_qt.pymol_qt_gui), python2.7(pmg_qt.syntax), python2.7(pmg_qt.syntax.pml), python2.7(pmg_qt.syntax.pmlparser), python2.7(pmg_qt.syntax.python), python2.7(pmg_qt.volume), python2.7(pymol.Qt), python2.7(pymol.Qt.utils), python2.7(pymol.__main__), python2.7(pymol._cmd), python2.7(pymol._gui), python2.7(pymol.api), python2.7(pymol.callback), python2.7(pymol.cgo), python2.7(pymol.checking), python2.7(pymol.cmd), python2.7(pymol.colorprinting), python2.7(pymol.colorramping), python2.7(pymol.commanding), python2.7(pymol.completing), python2.7(pymol.computing), python2.7(pymol.constants), python2.7(pymol.constants_palette), python2.7(pymol.contrib), python2.7(pymol.controlling), python2.7(pymol.creating), python2.7(pymol.diagnosing), python2.7(pymol.editing), python2.7(pymol.editor), python2.7(pymol.embed), python2.7(pymol.embed.epymol), python2.7(pymol.embed.wxpymol), python2.7(pymol.experimenting), python2.7(pymol.exporting), python2.7(pymol.externing), python2.7(pymol.feedingback), python2.7(pymol.fitting), python2.7(pymol.gui), python2.7(pymol.headering), python2.7(pymol.helping), python2.7(pymol.importing), python2.7(pymol.internal), python2.7(pymol.invocation), python2.7(pymol.keyboard), python2.7(pymol.keywords), python2.7(pymol.lazyio), python2.7(pymol.locking), python2.7(pymol.m4x), python2.7(pymol.menu), python2.7(pymol.monitoring), python2.7(pymol.morphing), python2.7(pymol.movie), python2.7(pymol.moving), python2.7(pymol.opengl), python2.7(pymol.opengl.gl), python2.7(pymol.opengl.glu), python2.7(pymol.opengl.glut), python2.7(pymol.parser), python2.7(pymol.parsing), python2.7(pymol.plugins), python2.7(pymol.plugins.installation), python2.7(pymol.plugins.legacysupport), python2.7(pymol.plugins.managergui), python2.7(pymol.plugins.managergui_qt), python2.7(pymol.plugins.repository), python2.7(pymol.povray), python2.7(pymol.preset), python2.7(pymol.pymol_path.data.startup.lightingsettings_gui), python2.7(pymol.pymol_path.data.startup.lightingsettings_gui.main), python2.7(pymol.pymolhttpd), python2.7(pymol.querying), python2.7(pymol.rpc), python2.7(pymol.selecting), python2.7(pymol.selector), python2.7(pymol.seqalign), python2.7(pymol.setting), python2.7(pymol.shortcut), python2.7(pymol.stereochemistry), python2.7(pymol.util), python2.7(pymol.vfont), python2.7(pymol.viewing), python2.7(pymol.wizard), python2.7(pymol.wizard.annotation), python2.7(pymol.wizard.appearance), python2.7(pymol.wizard.benchmark), python2.7(pymol.wizard.box), python2.7(pymol.wizard.charge), python2.7(pymol.wizard.cleanup), python2.7(pymol.wizard.command), python2.7(pymol.wizard.demo), python2.7(pymol.wizard.density), python2.7(pymol.wizard.distance), python2.7(pymol.wizard.dragging), python2.7(pymol.wizard.fedora), python2.7(pymol.wizard.filter), python2.7(pymol.wizard.label), python2.7(pymol.wizard.measurement), python2.7(pymol.wizard.message), python2.7(pymol.wizard.mutagenesis), python2.7(pymol.wizard.nucmutagenesis), python2.7(pymol.wizard.pair_fit), python2.7(pymol.wizard.pseudoatom), python2.7(pymol.wizard.renaming), python2.7(pymol.wizard.sculpting), python2.7(pymol.wizard.security), python2.7(pymol.wizard.stereodemo), python2.7(pymol.wizard.toggle), python2.7(pymol.wizarding), python2.7(pymol.xray), python2.7(pymol.xwin), python2.7(pymol2), python2.7(pymol2.cmd2)
Requires: python = 2.7, python-module-webpy, /usr/lib/python2.7/site-packages, libGL.so.1 >= set:piqUKwt1hejU3Pj9TL2Ntr99dgFaGXjCDVmGttJhR4kJuLhyc8O6ZnrayvDw4byxeWZ4fPtq6Y1AJkHkq9iu4vRT3BaeHywY6iPRmQkDZ4l2aJJ2iKBZle11ks5AcmPp2Bmc0Pret89Li70hUmrZCJI8tZ5pkVGVX6RoggbVvH8z91YWjBgEylTv5OukrXxSCIPMzRPQwWuwe1OKCXN0n4chIRgvevoVCMqY1yIEJ9VmkSUHrCsoe2Grvx663, libGLEW.so.2.1 >= set:piTP8Of1JOB3BfxFT6E2B2yWJf1VQtJjvM57tIzP1Gkla4qFfMcoBTTwEtss4XgyppNHa2fSMVZcZKH7H0UrFVGp4yboGPwPmj6Jg4Q2Kv0X08IJ80Zhc8VEu9EY3mVRkkpid99iODT04xbtvCru5fKJhbZ9ie8yI70ilkx6UsZuZAIrlBOFAZ5940PMofDZfdps1W3gZd5, libc.so.6(GLIBC_2.0), libc.so.6(GLIBC_2.1), libc.so.6(GLIBC_2.1.3), libc.so.6(GLIBC_2.2), libc.so.6(GLIBC_2.3), libc.so.6(GLIBC_2.3.4), libc.so.6(GLIBC_2.4), libc.so.6(GLIBC_2.7), libfreetype.so.6 >= set:lhcEBwdAEvqYfVSRnZ8QGCkI4X2, libgcc_s.so.1(GCC_3.0), libgcc_s.so.1(GLIBC_2.0), libm.so.6(GLIBC_2.0), libm.so.6(GLIBC_2.15), libpng16.so.16 >= set:lgHMZqVB6LYmR9l2ubaeM8NfUrEpuhiau0gi09p6oJyXRENfHdzJ5ZkcwCR2brsQfrKzffk, libpng16.so.16(PNG16_0), libpthread.so.0(GLIBC_2.0), libpthread.so.0(GLIBC_2.2), libpython2.7.so.1.0 >= set:oh5ga2oNfnavj1YOLqMVSh9GJKsernhAOFjT8K7iOlDGtBiTSQTnI0dqTlUVugOJ2k77rDCSknjYGIEmDtV1dWsq8n3ooINXX7YVyNZ8oX15sDJy5LYMS4qirJUe2cTfDfIUoiy0cU93aiJFkS1Bzg0gVMB2ztMnEMmgDjT6h3nn4EadglyDuKBbUyurZb9R9rEqSa9dH660m97Ae5e312o9WRSmwuAZtyODlhIzyb6hlVh6Gmldj0, libstdc++.so.6(CXXABI_1.3), libstdc++.so.6(CXXABI_1.3.8), libstdc++.so.6(GLIBCXX_3.4), libstdc++.so.6(GLIBCXX_3.4.11), libstdc++.so.6(GLIBCXX_3.4.15), libstdc++.so.6(GLIBCXX_3.4.18), libstdc++.so.6(GLIBCXX_3.4.20), libstdc++.so.6(GLIBCXX_3.4.21), libstdc++.so.6(GLIBCXX_3.4.9), libxml2.so.2 >= set:ojVRp4WgntgoMbEZsBQJ5vsWrxQ6YbrAQaABPAgc5w8aoJwSM84, libxml2.so.2(LIBXML2_2.4.30), libxml2.so.2(LIBXML2_2.6.0), libxml2.so.2(LIBXML2_2.6.3), python-modules, python2.7(OpenGL), python2.7(Pmw), python2.7(chempy), python2.7(inspect), python2.7(keyword), python2.7(numpy), python2.7(pmg_tk), python2.7(wxPython), rtld(GNU_HASH), rtld(GNU_UNIQUE)
Requires(rpmlib): rpmlib(SetVersions)
Obsoletes: libpymol
Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.Spdh5K
Creating python-module-pymol-debuginfo package
Processing files: python-module-chempy-2.3.0-alt1
Finding Provides (using /usr/lib/rpm/find-provides)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.t86eme
find-provides: running scripts (alternatives,debuginfo,gir,lib,pam,perl,pkgconfig,python,shell,typelib)
Finding Requires (using /usr/lib/rpm/find-requires)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.btvapq
find-requires: running scripts (cpp,debuginfo,files,gir-js,gir-python,gir,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks,systemd-services,typelib)
lib.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/champ/_champ.so: underlinked libraries: /lib/libm.so.6
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/__init__.py: line=191 IGNORE (for REQ=slight and deep=19) module=urllib
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/__init__.py: line=193 IGNORE (for REQ=slight and deep=19) module=urllib
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/__init__.py: line=196 IGNORE (for REQ=slight and deep=15) module=gzip
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/arc.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/arc.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bmin/__init__.py: skipping sys
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bmin/__init__.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bmin/commands.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bmin/realtime.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bmin/realtime.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bmin/realtime.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bmin/realtime.py: line=18 IGNORE (for REQ=slight and deep=8) module=molobj
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bmin/realtime.py: line=19 IGNORE (for REQ=slight and deep=8) module=typer
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bmin/realtime.py: line=20 IGNORE (for REQ=slight and deep=8) module=rules
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bmin/state.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bmin/state.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bmin/util.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/bmin/util.py: line=12 IGNORE (for REQ=slight and deep=8) module=pymol
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/cc1.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/cc1.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/cex.py: line=382 IGNORE (for REQ=slight and deep=12) module=StringIO
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/cex.py: line=384 IGNORE (for REQ=slight and deep=12) module=io
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/champ/__init__.py: line=18 possible relative import from ., UNIMPLEMENTED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/champ/assign.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/champ/assign.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/champ/assign.py: line=64 IGNORE (for REQ=slight and deep=12) module=chempy
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/champ/assign.py: line=168 IGNORE (for REQ=slight and deep=12) module=chempy
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/cif.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/cif.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/cif.py: line=681 IGNORE (for REQ=slight and deep=19) module=pymol
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/dictdb.py: skipping sys
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/dictdb.py: line=22 IGNORE (for REQ=slight and deep=8) module=cPickle
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/dictdb.py: line=23 IGNORE (for REQ=slight and deep=8) module=SocketServer
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/dictdb.py: line=25 IGNORE (for REQ=slight and deep=8) module=pickle
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/dictdb.py: line=26 IGNORE (for REQ=slight and deep=8) module=socketserver
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/dictdb.py: line=651 IGNORE (for REQ=slight and deep=8) module=os
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/dictdb.py: line=768 IGNORE (for REQ=slight and deep=8) module=random
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/fast/__init__.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/fast/__init__.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/fragments/__init__.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/fragments/__init__.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/gamess1.py: skipping sys
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/gamess1.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/gamess1.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/gamess1.py: line=366 IGNORE (for REQ=slight and deep=11) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/gamess1.py: line=367 possible relative import from ., UNIMPLEMENTED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/gms.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/gms.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/hetatm.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/hetatm.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/hetatm.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/hetatm.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/hetatm.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/io.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/io.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/io.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/io.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/io.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/io.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/io.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/io.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/io.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/io.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/io.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/lst.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mae.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mae.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mmd.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mmd.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mmtf/__init__.py: line=10 IGNORE (for REQ=slight and deep=8) module=itertools
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mmtf/__init__.py: line=36 IGNORE (for REQ=slight and deep=8) module=itertools
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mmtf/__init__.py: line=37 IGNORE (for REQ=slight and deep=8) module=chempy
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mmtf/__init__.py: line=152 possible relative import from ., UNIMPLEMENTED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mmtf/io.py: skipping sys
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mmtf/io.py: line=16 IGNORE (for REQ=slight and deep=8) module=msgpack
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mmtf/io.py: line=18 IGNORE (for REQ=slight and deep=8) module=umsgpack
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mmtf/io.py: line=21 IGNORE (for REQ=slight and deep=8) module=urllib
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mmtf/io.py: line=27 IGNORE (for REQ=slight and deep=8) module=urllib
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mmtf/io.py: line=230 IGNORE (for REQ=slight and deep=15) module=io
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mmtf/io.py: line=230 IGNORE (for REQ=slight and deep=15) module=gzip
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/models.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/models.py: line=19 possible relative import from ., UNIMPLEMENTED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mol.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mol.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mol.py: line=19 IGNORE (for REQ=slight and deep=8) module=pymol
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/mol2.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/pdb.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/pdb.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/pkl.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/pkl.py: line=18 IGNORE (for REQ=slight and deep=8) module=cPickle
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/pkl.py: line=20 IGNORE (for REQ=slight and deep=8) module=pickle
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/pkl.py: line=37 IGNORE (for REQ=slight and deep=12) module=struct
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/place.py: line=20 possible relative import from ., UNIMPLEMENTED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/place.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/place.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/place.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/place.py: line=326 IGNORE (for REQ=slight and deep=8) module=random
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/place.py: line=327 IGNORE (for REQ=slight and deep=8) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/place.py: line=328 IGNORE (for REQ=slight and deep=8) module=chempy
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/protein.py: line=21 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/protein.py: line=22 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/protein.py: line=23 possible relative import from ., UNIMPLEMENTED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/protein.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/protein.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/protein.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/protein.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/protein.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/sdf.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/sdf.py: line=148 IGNORE (for REQ=slight and deep=19) module=urllib
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/sdf.py: line=150 IGNORE (for REQ=slight and deep=19) module=urllib
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/solvate.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/solvate.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/solvate.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/tinker/__init__.py: skipping sys
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/tinker/__init__.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/tinker/amber.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/tinker/keyword.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/tinker/realtime.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/tinker/realtime.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/tinker/realtime.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/tinker/realtime.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/tinker/realtime.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/tinker/realtime.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/tinker/realtime.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/tinker/realtime.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/tinker/realtime.py: line=37 IGNORE (for REQ=slight and deep=8) module=molobj
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/tinker/realtime.py: line=38 IGNORE (for REQ=slight and deep=8) module=typer
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/tinker/realtime.py: line=39 IGNORE (for REQ=slight and deep=8) module=rules
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/tinker/state.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/tinker/state.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/xyz.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/chempy/xyz.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED
Provides: python2.7-module-pymol = 2.3.0-alt1, python2.7(chempy), python2.7(chempy.arc), python2.7(chempy.bmin), python2.7(chempy.bmin.commands), python2.7(chempy.bmin.realtime), python2.7(chempy.bmin.state), python2.7(chempy.bmin.util), python2.7(chempy.bond_amber), python2.7(chempy.bond_mmff), python2.7(chempy.bonds), python2.7(chempy.brick), python2.7(chempy.cc1), python2.7(chempy.cex), python2.7(chempy.champ), python2.7(chempy.champ._champ), python2.7(chempy.champ.amber99), python2.7(chempy.champ.assign), python2.7(chempy.champ.formal_charges), python2.7(chempy.charge), python2.7(chempy.cif), python2.7(chempy.cpv), python2.7(chempy.dictdb), python2.7(chempy.fast), python2.7(chempy.fragments), python2.7(chempy.gamess1), python2.7(chempy.gms), python2.7(chempy.hetatm), python2.7(chempy.io), python2.7(chempy.lst), python2.7(chempy.mae), python2.7(chempy.map), python2.7(chempy.mass), python2.7(chempy.mmd), python2.7(chempy.mmtf), python2.7(chempy.mmtf.io), python2.7(chempy.models), python2.7(chempy.mol), python2.7(chempy.mol2), python2.7(chempy.neighbor), python2.7(chempy.pdb), python2.7(chempy.pkl), python2.7(chempy.place), python2.7(chempy.protein), python2.7(chempy.protein_amber), python2.7(chempy.protein_amber99), python2.7(chempy.protein_mmff), python2.7(chempy.protein_residues), python2.7(chempy.sdf), python2.7(chempy.solvate), python2.7(chempy.tinker), python2.7(chempy.tinker.amber), python2.7(chempy.tinker.keyword), python2.7(chempy.tinker.realtime), python2.7(chempy.tinker.state), python2.7(chempy.water_amber), python2.7(chempy.water_residues), python2.7(chempy.xyz)
Requires: python-module-pymol = 2.3.0-alt1, python = 2.7, python2.7(pymol), /usr/lib/python2.7/site-packages, libc.so.6(GLIBC_2.0), libc.so.6(GLIBC_2.1.3), libc.so.6(GLIBC_2.3.4), libc.so.6(GLIBC_2.4), libpython2.7.so.1.0 >= set:ojlg5MxXZmrCxdSJ2MXxRMy3vnwlHD0Mvp7OOgKEyONgtV2thL4p8wW1ZBsZ7AeTy2alh, python-modules, python2.7(Numeric), python2.7(Precision), python2.7(numpy), rtld(GNU_HASH)
Requires(rpmlib): rpmlib(SetVersions)
Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.ULSOBu
Creating python-module-chempy-debuginfo package
Processing files: python-module-pmg_tk-2.3.0-alt1
Finding Provides (using /usr/lib/rpm/find-provides)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.JcKrEL
find-provides: running scripts (alternatives,debuginfo,gir,lib,pam,perl,pkgconfig,python,shell,typelib)
Finding Requires (using /usr/lib/rpm/find-requires)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.JU4q6m
find-requires: running scripts (cpp,debuginfo,files,gir-js,gir-python,gir,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks,systemd-services,typelib)
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/ColorEditor.py: skipping sys
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/ColorEditor.py: line=23 IGNORE (for REQ=slight and deep=8) module=Tkinter
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/ColorEditor.py: line=24 IGNORE (for REQ=slight and deep=8) module=tkColorChooser
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/ColorEditor.py: line=26 IGNORE (for REQ=slight and deep=8) module=tkinter
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/ColorEditor.py: line=27 IGNORE (for REQ=slight and deep=8) module=tkinter
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/PMGApp.py: skipping sys
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/PMGApp.py: line=25 IGNORE (for REQ=slight and deep=8) module=Queue
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/PMGApp.py: line=26 IGNORE (for REQ=slight and deep=8) module=Tkinter
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/PMGApp.py: line=27 IGNORE (for REQ=slight and deep=8) module=tkFileDialog
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/PMGApp.py: line=28 IGNORE (for REQ=slight and deep=8) module=tkMessageBox
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/PMGApp.py: line=30 IGNORE (for REQ=slight and deep=8) module=queue
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/PMGApp.py: line=31 IGNORE (for REQ=slight and deep=8) module=tkinter
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/PMGApp.py: line=32 IGNORE (for REQ=slight and deep=8) module=tkinter
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/PMGApp.py: line=33 IGNORE (for REQ=slight and deep=8) module=tkinter
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/PMGApp.py: line=38 IGNORE (for REQ=slight and deep=12) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/PMGApp.py: line=219 IGNORE (for REQ=slight and deep=15) module=time
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/PMGApp.py: line=256 IGNORE (for REQ=slight and deep=11) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/PMGApp.py: line=360 IGNORE (for REQ=slight and deep=15) module=platform
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/PyMOLMapLoad.py: line=353 IGNORE (for REQ=slight and deep=12) module=Tkinter
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/PyMOLMapLoad.py: line=355 IGNORE (for REQ=slight and deep=12) module=tkinter
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/SetEditor.py: skipping sys
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/SetEditor.py: line=19 IGNORE (for REQ=slight and deep=8) module=Tkinter
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/SetEditor.py: line=21 IGNORE (for REQ=slight and deep=8) module=tkinter
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/Setting.py: skipping sys
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/Setting.py: line=22 IGNORE (for REQ=slight and deep=8) module=Tkinter
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/Setting.py: line=23 IGNORE (for REQ=slight and deep=8) module=Tkinter
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/Setting.py: line=25 IGNORE (for REQ=slight and deep=8) module=tkinter
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/Setting.py: line=26 IGNORE (for REQ=slight and deep=8) module=tkinter
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/TextEditor.py: skipping sys
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/TextEditor.py: line=9 IGNORE (for REQ=slight and deep=8) module=Tkinter
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/TextEditor.py: line=10 IGNORE (for REQ=slight and deep=8) module=tkFileDialog
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/TextEditor.py: line=11 IGNORE (for REQ=slight and deep=8) module=tkMessageBox
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/TextEditor.py: line=12 IGNORE (for REQ=slight and deep=8) module=tkSimpleDialog
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/TextEditor.py: line=14 IGNORE (for REQ=slight and deep=8) module=tkinter
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/TextEditor.py: line=15 IGNORE (for REQ=slight and deep=8) module=tkinter
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/TextEditor.py: line=16 IGNORE (for REQ=slight and deep=8) module=tkinter
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/TextEditor.py: line=17 IGNORE (for REQ=slight and deep=8) module=tkinter
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/TextEditor.py: line=98 IGNORE (for REQ=slight and deep=8) module=Pmw
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/__init__.py: skipping sys
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/__init__.py: line=27 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/demo/__init__.py: line=8 IGNORE (for REQ=slight and deep=8) module=Tkinter
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/demo/__init__.py: line=9 IGNORE (for REQ=slight and deep=8) module=tkFileDialog
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/demo/__init__.py: line=11 IGNORE (for REQ=slight and deep=8) module=tkinter
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/demo/__init__.py: line=12 IGNORE (for REQ=slight and deep=8) module=tkinter
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/demo/__init__.py: hiding pmg_tk, which SEEMS TO BE SELF-SATISFIED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/normal/ModalWindow.py: line=3 IGNORE (for REQ=slight and deep=8) module=Tkinter
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/normal/ModalWindow.py: line=5 IGNORE (for REQ=slight and deep=8) module=tkinter
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/normal/__init__.py: skipping sys
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/normal/__init__.py: line=13 IGNORE (for REQ=slight and deep=8) module=Tkinter
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/normal/__init__.py: line=14 IGNORE (for REQ=slight and deep=8) module=tkFileDialog
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/normal/__init__.py: line=15 IGNORE (for REQ=slight and deep=8) module=tkMessageBox
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/normal/__init__.py: line=16 IGNORE (for REQ=slight and deep=8) module=tkFont
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/normal/__init__.py: line=19 IGNORE (for REQ=slight and deep=8) module=tkinter
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/normal/__init__.py: line=20 IGNORE (for REQ=slight and deep=8) module=tkinter
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/normal/__init__.py: line=21 IGNORE (for REQ=slight and deep=8) module=tkinter
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/normal/__init__.py: line=22 IGNORE (for REQ=slight and deep=8) module=tkinter
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/normal/__init__.py: hiding pmg_tk, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/normal/__init__.py: hiding pmg_tk, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/normal/__init__.py: hiding pmg_tk, which SEEMS TO BE SELF-SATISFIED
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/normal/__init__.py: hiding pmg_tk, which SEEMS TO BE SELF-SATISFIED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/normal/__init__.py: line=34 possible relative import from ., UNIMPLEMENTED
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/normal/__init__.py: line=888 IGNORE (for REQ=slight and deep=11) module=pmg_tk
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/normal/__init__.py: line=949 IGNORE (for REQ=slight and deep=15) module=freemol
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/normal/builder.py: skipping sys
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/normal/builder.py: line=11 IGNORE (for REQ=slight and deep=8) module=Tkinter
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/normal/builder.py: line=12 IGNORE (for REQ=slight and deep=8) module=tkMessageBox
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/normal/builder.py: line=14 IGNORE (for REQ=slight and deep=8) module=tkinter
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/skins/normal/builder.py: line=15 IGNORE (for REQ=slight and deep=8) module=tkinter
python.req: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/startup/apbs_tools.py: skipping sys
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/startup/apbs_tools.py: line=152 IGNORE (for REQ=slight and deep=8) module=Tkinter
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/startup/apbs_tools.py: line=153 IGNORE (for REQ=slight and deep=8) module=Tkinter
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/startup/apbs_tools.py: line=155 IGNORE (for REQ=slight and deep=8) module=tkinter
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/startup/apbs_tools.py: line=156 IGNORE (for REQ=slight and deep=8) module=tkinter
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/startup/apbs_tools.py: line=337 IGNORE (for REQ=slight and deep=8) module=subprocess
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/startup/apbs_tools.py: line=337 IGNORE (for REQ=slight and deep=8) module=tempfile
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/startup/apbs_tools.py: line=885 IGNORE (for REQ=slight and deep=15) module=freemol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/startup/apbs_tools.py: line=1113 IGNORE (for REQ=slight and deep=15) module=webbrowser
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/startup/apbs_tools.py: line=1116 IGNORE (for REQ=slight and deep=15) module=webbrowser
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/startup/apbs_tools.py: line=1201 IGNORE (for REQ=slight and deep=15) module=imp
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/startup/apbs_tools.py: line=1678 IGNORE (for REQ=slight and deep=11) module=shlex
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/startup/apbs_tools.py: line=1682 IGNORE (for REQ=slight and deep=19) module=imp
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/startup/apbs_tools.py: line=1690 IGNORE (for REQ=slight and deep=23) module=pdb2pqr
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/startup/apbs_tools.py: line=1692 IGNORE (for REQ=slight and deep=15) module=pdb2pqr
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/startup/apbs_tools.py: line=1695 IGNORE (for REQ=slight and deep=15) module=pdb2pqr
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/startup/apbs_tools.py: line=1788 IGNORE (for REQ=slight and deep=11) module=chempy
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/volume.py: line=11 IGNORE (for REQ=slight and deep=8) module=Tkinter
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/volume.py: line=13 IGNORE (for REQ=slight and deep=8) module=tkinter
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/volume.py: line=16 IGNORE (for REQ=slight and deep=8) module=pymol
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/volume.py: line=406 IGNORE (for REQ=slight and deep=11) module=random
/usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/volume.py: line=1018 IGNORE (for REQ=slight and deep=8) module=Pmw
shebang.req.files: executable script /usr/src/tmp/pymol-buildroot/usr/lib/python2.7/site-packages/pmg_tk/startup/apbs_tools.py is not executable
Provides: python2.7-module-pymol = 2.3.0-alt1, python2.7(pmg_tk), python2.7(pmg_tk.ColorEditor), python2.7(pmg_tk.Demo), python2.7(pmg_tk.PMGApp), python2.7(pmg_tk.PyMOLMapLoad), python2.7(pmg_tk.SetEditor), python2.7(pmg_tk.Setting), python2.7(pmg_tk.TextEditor), python2.7(pmg_tk.skins), python2.7(pmg_tk.skins.demo), python2.7(pmg_tk.skins.normal), python2.7(pmg_tk.skins.normal.ModalWindow), python2.7(pmg_tk.skins.normal.builder), python2.7(pmg_tk.startup), python2.7(pmg_tk.startup.apbs_tools), python2.7(pmg_tk.volume)
Requires: python-module-pymol = 2.3.0-alt1, python = 2.7, python2.7(pymol), /usr/lib/python2.7/site-packages, python-modules, python2.7(Pmw), python2.7(chempy), python2.7(distutils)
Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.P606kj
Processing files: pymol-doc-2.3.0-alt1
Finding Provides (using /usr/lib/rpm/find-provides)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.LkU9Yn
find-provides: running scripts (alternatives,debuginfo,gir,lib,pam,perl,pkgconfig,python,shell,typelib)
Finding Requires (using /usr/lib/rpm/find-requires)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.m9PtZO
find-requires: running scripts (cpp,debuginfo,files,gir-js,gir-python,gir,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks,systemd-services,typelib)
Processing files: python-module-pymol-debuginfo-2.3.0-alt1
Finding Provides (using /usr/lib/rpm/find-provides)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.HGG1SY
find-provides: running scripts (debuginfo)
Finding Requires (using /usr/lib/rpm/find-requires)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.5GoAWA
find-requires: running scripts (debuginfo)
Requires: python-module-pymol = 2.3.0-alt1, debug(libGL.so.1), debug(libGLEW.so.2.1), debug(libc.so.6), debug(libfreetype.so.6), debug(libgcc_s.so.1), debug(libm.so.6), debug(libpng16.so.16), debug(libpthread.so.0), debug(libpython2.7.so.1.0), debug(libstdc++.so.6), debug(libxml2.so.2)
Processing files: python-module-chempy-debuginfo-2.3.0-alt1
Finding Provides (using /usr/lib/rpm/find-provides)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.zZZ9wE
find-provides: running scripts (debuginfo)
Finding Requires (using /usr/lib/rpm/find-requires)
Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.Y4LZDa
find-requires: running scripts (debuginfo)
Requires: python-module-chempy = 2.3.0-alt1, debug(libc.so.6), debug(libpython2.7.so.1.0)
Adding to pymol a strict dependency on python-module-pymol
Adding to pymol-devel a strict dependency on python-module-pymol
Adding to python-module-chempy a strict dependency on python-module-pymol
Adding to python-module-pmg_tk a strict dependency on python-module-pymol
Adding to python-module-pymol-debuginfo a strict dependency on python-module-pymol
Adding to python-module-chempy-debuginfo a strict dependency on python-module-chempy
Adding to pymol-devel a strict dependency on python-module-chempy
Adding to python-module-pymol a strict dependency on python-module-chempy
Adding to python-module-pymol a strict dependency on python-module-pmg_tk
Adding to python-module-pmg_tk a strict dependency on python-module-chempy
Removing 1 extra deps from pymol-devel due to dependency on python-module-pymol
Removing 1 extra deps from pymol-devel due to dependency on python-module-chempy
Removing 1 extra deps from python-module-pymol due to dependency on python-module-chempy
Removing 1 extra deps from python-module-chempy due to dependency on python-module-pymol
Removing 1 extra deps from python-module-pymol due to dependency on python-module-pmg_tk
Removing 1 extra deps from python-module-pmg_tk due to dependency on python-module-pymol
Removing 1 extra deps from python-module-pmg_tk due to dependency on python-module-chempy
Removing 2 extra deps from pymol-devel due to repentancy on python-module-pymol
Removing 9 extra deps from python-module-pymol due to repentancy on python-module-chempy
Removing 1 extra deps from python-module-pymol due to repentancy on python-module-pmg_tk
Removing 2 extra deps from python-module-chempy due to repentancy on python-module-pmg_tk
Wrote: /usr/src/RPM/RPMS/i586/pymol-2.3.0-alt1.i586.rpm
Wrote: /usr/src/RPM/RPMS/i586/pymol-devel-2.3.0-alt1.i586.rpm
Wrote: /usr/src/RPM/RPMS/i586/python-module-pymol-2.3.0-alt1.i586.rpm
Wrote: /usr/src/RPM/RPMS/i586/python-module-chempy-2.3.0-alt1.i586.rpm
Wrote: /usr/src/RPM/RPMS/i586/python-module-pmg_tk-2.3.0-alt1.i586.rpm
Wrote: /usr/src/RPM/RPMS/noarch/pymol-doc-2.3.0-alt1.noarch.rpm
Wrote: /usr/src/RPM/RPMS/i586/python-module-pymol-debuginfo-2.3.0-alt1.i586.rpm
Wrote: /usr/src/RPM/RPMS/i586/python-module-chempy-debuginfo-2.3.0-alt1.i586.rpm
403.09user 22.34system 9:05.92elapsed 77%CPU (0avgtext+0avgdata 443440maxresident)k
0inputs+0outputs (0major+8646032minor)pagefaults 0swaps
424.64user 27.80system 9:34.52elapsed 78%CPU (0avgtext+0avgdata 443440maxresident)k
624inputs+0outputs (0major+9361644minor)pagefaults 0swaps