<86>Sep 27 09:08:47 userdel[1236487]: delete user 'rooter' <86>Sep 27 09:08:47 userdel[1236487]: removed group 'rooter' owned by 'rooter' <86>Sep 27 09:08:47 userdel[1236487]: removed shadow group 'rooter' owned by 'rooter' <86>Sep 27 09:08:47 groupadd[1236503]: group added to /etc/group: name=rooter, GID=561 <86>Sep 27 09:08:47 groupadd[1236503]: group added to /etc/gshadow: name=rooter <86>Sep 27 09:08:47 groupadd[1236503]: new group: name=rooter, GID=561 <86>Sep 27 09:08:47 useradd[1236523]: new user: name=rooter, UID=561, GID=561, home=/root, shell=/bin/bash <86>Sep 27 09:08:47 userdel[1236545]: delete user 'builder' <86>Sep 27 09:08:47 userdel[1236545]: removed group 'builder' owned by 'builder' <86>Sep 27 09:08:47 userdel[1236545]: removed shadow group 'builder' owned by 'builder' <86>Sep 27 09:08:47 groupadd[1236559]: group added to /etc/group: name=builder, GID=562 <86>Sep 27 09:08:47 groupadd[1236559]: group added to /etc/gshadow: name=builder <86>Sep 27 09:08:47 groupadd[1236559]: new group: name=builder, GID=562 <86>Sep 27 09:08:47 useradd[1236571]: new user: name=builder, UID=562, GID=562, home=/usr/src, shell=/bin/bash warning: Macro %cmake_insource not found <13>Sep 27 09:08:53 rpmi: libexpat-2.2.4-alt1 1503305345 installed <13>Sep 27 09:08:53 rpmi: libpng16-1.6.36-alt1 sisyphus+219478.100.1.1 1547633314 installed <13>Sep 27 09:08:53 rpmi: xorg-proto-devel-2018.4-alt3 1527685079 installed <13>Sep 27 09:08:53 rpmi: libjpeg-2:2.0.2-alt1 sisyphus+226996.100.1.1 1554902907 installed <13>Sep 27 09:08:53 rpmi: libogg-1.3.4-alt1 p9+249556.100.1.1 1586300646 installed <13>Sep 27 09:08:53 rpmi: libglvnd-7:1.3.1-alt0.p9 p9+251991.160.19.1 1590834872 installed <13>Sep 27 09:08:53 rpmi: libwayland-client-1.17.0-alt1 sisyphus+225894.100.1.1 1553872805 installed <13>Sep 27 09:08:53 rpmi: libcom_err-1.44.6-alt1 sisyphus+224154.100.1.1 1552091678 installed <13>Sep 27 09:08:53 rpmi: zlib-devel-1.2.11-alt1 sisyphus+221902.6000.4.1 1550601058 installed <13>Sep 27 09:08:53 rpmi: libXau-1.0.9-alt1 sisyphus+223149.200.2.1 1551268152 installed <13>Sep 27 09:08:53 rpmi: libwayland-server-1.17.0-alt1 sisyphus+225894.100.1.1 1553872805 installed <13>Sep 27 09:08:53 rpmi: libgraphite2-1.3.13-alt2 sisyphus+226799.100.1.1 1554648241 installed <13>Sep 27 09:08:53 rpmi: libharfbuzz-2.6.2-alt1 p9+238790.200.1.1 1570435826 installed <13>Sep 27 09:08:53 rpmi: libfreetype-2.10.1-alt1.1.p9 p9+257445.200.2.1 1599282976 installed <13>Sep 27 09:08:53 rpmi: fontconfig-2.13.1-alt1 p9+247340.200.3.1 1583400517 installed Updating fonts cache: <29>Sep 27 09:08:55 fontconfig: Updating fonts cache: succeeded [ DONE ] <13>Sep 27 09:08:55 rpmi: libidn2-2.2.0-alt1 p9+229971.100.2.1 1558696281 installed <13>Sep 27 09:08:55 rpmi: libgdbm-1.8.3-alt10 1454943334 installed <13>Sep 27 09:08:55 rpmi: libgraphite2-devel-1.3.13-alt2 sisyphus+226799.100.1.1 1554648241 installed <13>Sep 27 09:08:55 rpmi: libXau-devel-1.0.9-alt1 sisyphus+223149.200.2.1 1551268152 installed <13>Sep 27 09:08:55 rpmi: libpng-devel-1.6.36-alt1 sisyphus+219478.100.1.1 1547633314 installed <13>Sep 27 09:08:55 rpmi: libe2fs-1.44.6-alt1 sisyphus+224154.100.1.1 1552091678 installed <13>Sep 27 09:08:55 rpmi: libwayland-egl-4:18.1.0-alt1 sisyphus+225894.100.1.1 1553872805 installed <13>Sep 27 09:08:55 rpmi: libOpenGL-7:1.3.1-alt0.p9 p9+251991.160.19.1 1590834872 installed <13>Sep 27 09:08:55 rpmi: libflac8-1.3.3-alt1 p9+249557.100.1.1 1586302007 installed <13>Sep 27 09:08:55 rpmi: libvorbis-1.3.6-alt2 sisyphus+220072.200.2.2 1548744475 installed <13>Sep 27 09:08:55 rpmi: libjasper-2.0.14-alt1 1530105217 installed <13>Sep 27 09:08:55 rpmi: libgtk+2-locales-2.24.32-alt3 sisyphus+227306.100.1.3 1555646039 installed <13>Sep 27 09:08:55 rpmi: liborc-0.4.30.1-alt0.2 p9+238791.100.1.1 1570624361 installed <13>Sep 27 09:08:55 rpmi: libgudev-1:233-alt1 p9+235498.500.2.1 1565021367 installed <13>Sep 27 09:08:55 rpmi: libfribidi-1.0.7-alt1 p9+238309.200.1.1 1569787058 installed <13>Sep 27 09:08:55 rpmi: libdatrie-0.2.9-alt1_6 1511686676 installed <13>Sep 27 09:08:55 rpmi: libthai-0.1.28-alt1_1 sisyphus+226107.100.1.1 1554123079 installed <13>Sep 27 09:08:55 rpmi: libpixman-3:0.38.4-alt1 sisyphus+228006.100.1.1 1556013870 installed <13>Sep 27 09:08:55 rpmi: libatk-locales-2.32.0-alt1 sisyphus+225059.600.3.2 1552845198 installed <13>Sep 27 09:08:55 rpmi: libatk-2.32.0-alt1 sisyphus+225059.600.3.2 1552845362 installed <13>Sep 27 09:08:55 rpmi: libgsm-1.0.17-alt1 1523356165 installed <13>Sep 27 09:08:55 rpmi: libsndfile-1.0.28-alt2 sisyphus.212728.100 1536333068 installed <13>Sep 27 09:08:55 rpmi: liblz4-1:1.9.2-alt1 p9+238696.500.1.1 1570228299 installed <13>Sep 27 09:08:55 rpmi: libgpg-error-1.36-alt1 sisyphus+225621.300.1.1 1553521082 installed <13>Sep 27 09:08:55 rpmi: libgcrypt20-1.8.5-alt3 p9+239665.100.7.1 1586364779 installed <13>Sep 27 09:08:55 rpmi: libsystemd-1:243.8-alt2 p9+249709.100.3.1 1586972032 installed <13>Sep 27 09:08:55 rpmi: libdbus-1.12.16-alt2 p9+240607.100.1.1 1573553687 installed <13>Sep 27 09:08:56 rpmi: libavahi-0.6.32-alt1 1500485702 installed <13>Sep 27 09:08:56 rpmi: libcups-2.3.1-alt1 p9+247593.200.5.1 1585155229 installed <13>Sep 27 09:08:56 rpmi: libasyncns-0.8-alt2.qa1 1365949820 installed <13>Sep 27 09:08:56 rpmi: libalsa-1:1.1.9-alt2 sisyphus+229323.100.1.1 1557826759 installed <13>Sep 27 09:08:56 rpmi: libICE-1.0.9-alt1 1409902721 installed <13>Sep 27 09:08:56 rpmi: libSM-1.2.3-alt1 sisyphus+226734.100.2.1 1554586158 installed <13>Sep 27 09:08:56 rpmi: libxshmfence-1.3-alt1 sisyphus+223149.1000.2.1 1551268571 installed <13>Sep 27 09:08:56 rpmi: libX11-locales-3:1.6.7-alt2 p9+258208.100.1.1 1600333167 installed <13>Sep 27 09:08:56 rpmi: libXdmcp-1.1.3-alt1 sisyphus+225206.600.1.2 1552949353 installed <13>Sep 27 09:08:56 rpmi: libxcb-1.13.1-alt1 sisyphus+226527.100.2.2 1554593801 installed <13>Sep 27 09:08:56 rpmi: libX11-3:1.6.7-alt2 p9+258208.100.1.1 1600333162 installed <13>Sep 27 09:08:56 rpmi: libXext-1.3.4-alt1 sisyphus+225206.700.1.2 1552949429 installed <13>Sep 27 09:08:56 rpmi: libXrender-0.9.8-alt1 1371312112 installed <13>Sep 27 09:08:56 rpmi: libXfixes-5.0.3-alt1 sisyphus+226736.100.2.2 1554614841 installed <13>Sep 27 09:08:56 rpmi: libXrandr-1.5.2-alt1 sisyphus+225206.1300.1.2 1552949710 installed <13>Sep 27 09:08:56 rpmi: libXinerama-1.1.4-alt1 sisyphus+223149.300.2.1 1551268216 installed <13>Sep 27 09:08:56 rpmi: libXdamage-1.1.5-alt1 sisyphus+225206.500.1.2 1552949286 installed <13>Sep 27 09:08:58 rpmi: libxcb-devel-1.13.1-alt1 sisyphus+226527.100.2.2 1554593801 installed <13>Sep 27 09:08:58 rpmi: libX11-devel-3:1.6.7-alt2 p9+258208.100.1.1 1600333162 installed <13>Sep 27 09:08:58 rpmi: libXext-devel-1.3.4-alt1 sisyphus+225206.700.1.2 1552949429 installed <13>Sep 27 09:08:58 rpmi: libXrender-devel-0.9.8-alt1 1371312112 installed <13>Sep 27 09:08:58 rpmi: libXcursor-1.2.0-alt1 sisyphus+225206.400.1.2 1552949218 installed <13>Sep 27 09:08:58 rpmi: libXft-2.3.3-alt1 sisyphus+225206.1000.3.2 1552987708 installed <13>Sep 27 09:08:58 rpmi: libXxf86vm-1.1.4-alt2 1527672187 installed <13>Sep 27 09:08:58 rpmi: libXi-1.7.9-alt2 sisyphus+226377.100.1.2 1554260260 installed <13>Sep 27 09:08:58 rpmi: libXcomposite-0.4.5-alt1 sisyphus+225206.300.1.2 1552949137 installed <13>Sep 27 09:08:58 rpmi: libpulseaudio-13.0-alt3 p9+254091.100.3.1 1593708023 installed <13>Sep 27 09:08:59 rpmi: libSDL-1.2.14-alt8 p9+232634.100.1.1 1560964518 installed <13>Sep 27 09:08:59 rpmi: libpciaccess-1:0.14-alt1 1528969252 installed <13>Sep 27 09:08:59 rpmi: libdrm-1:2.4.102-alt1 p9+252863.100.1.1 1591372623 installed <13>Sep 27 09:08:59 rpmi: libGLX-mesa-4:20.1.8-alt1 p9+258208.300.1.1 1600333790 installed <13>Sep 27 09:08:59 rpmi: libgbm-4:20.1.8-alt1 p9+258208.300.1.1 1600333790 installed <13>Sep 27 09:08:59 rpmi: libEGL-mesa-4:20.1.8-alt1 p9+258208.300.1.1 1600333790 installed <13>Sep 27 09:08:59 rpmi: libEGL-7:1.3.1-alt0.p9 p9+251991.160.19.1 1590834872 installed <13>Sep 27 09:08:59 rpmi: libGLX-7:1.3.1-alt0.p9 p9+251991.160.19.1 1590834872 installed <13>Sep 27 09:08:59 rpmi: libGL-7:1.3.1-alt0.p9 p9+251991.160.19.1 1590834872 installed <13>Sep 27 09:08:59 rpmi: libglvnd-devel-7:1.3.1-alt0.p9 p9+251991.160.19.1 1590834872 installed <13>Sep 27 09:08:59 rpmi: libcairo-1:1.16.0-alt1 sisyphus+226534.100.2.3 1554515535 installed <13>Sep 27 09:08:59 rpmi: libpango-1.44.6-alt1 p9+237353.700.2.2 1568374131 installed <13>Sep 27 09:08:59 rpmi: libEGL-devel-4:20.1.8-alt1 p9+258208.300.1.1 1600333790 installed <13>Sep 27 09:08:59 rpmi: libGL-devel-4:20.1.8-alt1 p9+258208.300.1.1 1600333790 installed <13>Sep 27 09:08:59 rpmi: icon-theme-hicolor-0.17-alt2 p9+248347.100.1.1 1584981172 installed <13>Sep 27 09:08:59 rpmi: libwebp7-1.0.3-alt1 p9+234901.200.1.1 1563552457 installed <13>Sep 27 09:08:59 rpmi: libjbig-2.1-alt1 1401380926 installed <13>Sep 27 09:08:59 rpmi: libtiff5-4.0.10.0.57.f9fc01c3-alt1 sisyphus+226958.100.1.1 1554850940 installed <13>Sep 27 09:08:59 rpmi: shared-mime-info-1.13.1-alt1 p9+238204.100.1.1 1569496447 installed <13>Sep 27 09:08:59 rpmi: libgdk-pixbuf-locales-2.38.2-alt1 p9+237353.1000.2.2 1568374008 installed <13>Sep 27 09:08:59 rpmi: gsettings-desktop-schemas-data-3.32.0-alt1 sisyphus+225059.300.3.2 1552843929 installed <13>Sep 27 09:08:59 rpmi: libgio-2.60.7-alt1 p9+237353.100.2.2 1568373081 installed <13>Sep 27 09:08:59 rpmi: gsettings-desktop-schemas-3.32.0-alt1 sisyphus+225059.300.3.2 1552843980 installed <13>Sep 27 09:08:59 rpmi: libgdk-pixbuf-2.38.2-alt1 p9+237353.1000.2.2 1568374336 installed <13>Sep 27 09:08:59 rpmi: libgstreamer1.0-1.16.1-alt1 p9+238791.200.1.1 1570624794 installed <13>Sep 27 09:09:00 rpmi: libgst-plugins1.0-1.16.1-alt1 p9+238791.300.1.1 1570625076 installed <13>Sep 27 09:09:00 rpmi: gtk-update-icon-cache-3.24.11-alt1 p9+237353.1200.2.2 1568374786 installed <13>Sep 27 09:09:00 rpmi: libgtk+2-2.24.32-alt3 sisyphus+227306.100.1.3 1555646092 installed <13>Sep 27 09:09:00 rpmi: wxGTK-2:2.8.12-alt1.svn20131012.5 1504027601 installed <13>Sep 27 09:09:00 rpmi: libwxGTK-2:2.8.12-alt1.svn20131012.5 1504027601 installed <13>Sep 27 09:09:00 rpmi: gcc-c++-common-1.4.23-alt1 sisyphus+221902.2500.4.1 1550596716 installed <13>Sep 27 09:09:01 rpmi: libstdc++8-devel-8.4.1-alt0.p9.1 p9+247559.100.2.1 1585587912 installed <13>Sep 27 09:09:02 rpmi: gcc8-c++-8.4.1-alt0.p9.1 p9+247559.100.2.1 1585587912 installed <13>Sep 27 09:09:03 rpmi: libicu64-1:6.4.2-alt2 p9+247371.14540.149.1 1590835209 installed <13>Sep 27 09:09:03 rpmi: libharfbuzz-icu-2.6.2-alt1 p9+238790.200.1.1 1570435826 installed <13>Sep 27 09:09:05 rpmi: libicu65-1:6.5.1-alt1 p9+247371.14560.149.1 1590835689 installed <13>Sep 27 09:09:05 rpmi: icu-utils-1:6.5.1-alt1 p9+247371.14560.149.1 1590835689 installed <13>Sep 27 09:09:05 rpmi: libicu-devel-1:6.5.1-alt1 p9+247371.14560.149.1 1590835689 installed <13>Sep 27 09:09:05 rpmi: xml-utils-1:2.9.10-alt2 p9+240157.100.1.1 1572735327 installed <13>Sep 27 09:09:05 rpmi: rpm-build-gir-0.7.3-alt2 p9+234356.40.2.1 1562933848 installed <13>Sep 27 09:09:05 rpmi: rpm-macros-cmake-3.16.3-alt1 p9+245760.100.3.1 1582902678 installed <13>Sep 27 09:09:05 rpmi: rmt-0.4b44-alt2 p9+258359.100.2.1 1601048375 installed <13>Sep 27 09:09:05 rpmi: dump-0.4b44-alt2 p9+258359.100.2.1 1601048375 installed <13>Sep 27 09:09:05 rpmi: cmake-modules-3.16.3-alt1 p9+245760.100.3.1 1582902649 installed <13>Sep 27 09:09:05 rpmi: libuv-1.37.0-alt1 p9+247371.14320.147.1 1590833496 installed <13>Sep 27 09:09:05 rpmi: librhash-1.3.5-alt2 1505156279 installed <13>Sep 27 09:09:05 rpmi: libjsoncpp19-1.8.4-alt2.S1 1518769525 installed <13>Sep 27 09:09:05 rpmi: publicsuffix-list-dafsa-20200909-alt1 p9+257853.100.1.1 1599769437 installed <13>Sep 27 09:09:05 rpmi: libpsl-0.21.1-alt1 p9+255207.100.1.1 1595355048 installed <13>Sep 27 09:09:05 rpmi: libnghttp2-1.41.0-alt1 p9+256449.100.1.1 1597829547 installed <13>Sep 27 09:09:05 rpmi: libbrotlicommon-1.0.7-alt1 sisyphus+226738.100.2.1 1554554568 installed <13>Sep 27 09:09:05 rpmi: libbrotlidec-1.0.7-alt1 sisyphus+226738.100.2.1 1554554568 installed <13>Sep 27 09:09:05 rpmi: python-modules-curses-2.7.16-alt1.M90P.1 p9+244933.100.1.1 1579867218 installed <13>Sep 27 09:09:05 rpmi: libtinfo-devel-6.1.20180407-alt2 sisyphus+222164.200.1.1 1550686226 installed <13>Sep 27 09:09:05 rpmi: libncurses-devel-6.1.20180407-alt2 sisyphus+222164.200.1.1 1550686226 installed <13>Sep 27 09:09:05 rpmi: libverto-0.3.0-alt1_7 sisyphus+225932.100.1.1 1553994919 installed <13>Sep 27 09:09:05 rpmi: libkeyutils-1.6-alt2 sisyphus+226520.100.2.1 1554512089 installed <13>Sep 27 09:09:05 rpmi: libp11-kit-0.23.15-alt1 sisyphus+226408.100.2.1 1554288204 installed <13>Sep 27 09:09:05 rpmi: libtasn1-4.14-alt1 p9+235792.100.2.1 1565425233 installed <13>Sep 27 09:09:05 rpmi: rpm-macros-alternatives-0.5.1-alt1 sisyphus+226946.100.1.1 1554830426 installed <13>Sep 27 09:09:05 rpmi: alternatives-0.5.1-alt1 sisyphus+226946.100.1.1 1554830426 installed <13>Sep 27 09:09:05 rpmi: ca-certificates-2020.01.23-alt1 p9+245253.100.3.1 1580749631 installed <13>Sep 27 09:09:05 rpmi: ca-trust-0.1.2-alt1 p9+233349.100.1.1 1561655062 installed <13>Sep 27 09:09:05 rpmi: p11-kit-trust-0.23.15-alt1 sisyphus+226408.100.2.1 1554288204 installed <13>Sep 27 09:09:05 rpmi: libcrypto1.1-1.1.1g-alt1 p9+250580.100.5.1 1588175266 installed <13>Sep 27 09:09:05 rpmi: libssl1.1-1.1.1g-alt1 p9+250580.100.5.1 1588175266 installed <86>Sep 27 09:09:05 groupadd[1268621]: group added to /etc/group: name=_keytab, GID=499 <86>Sep 27 09:09:05 groupadd[1268621]: group added to /etc/gshadow: name=_keytab <86>Sep 27 09:09:05 groupadd[1268621]: new group: name=_keytab, GID=499 <13>Sep 27 09:09:06 rpmi: libkrb5-1.17.1-alt1 p9+242852.100.2.1 1576572639 installed <13>Sep 27 09:09:06 rpmi: libpython3-3.7.4-alt3 p9+249932.100.2.1 1587127349 installed <13>Sep 27 09:09:06 rpmi: python3-3.7.4-alt3 p9+249932.100.2.1 1587127349 installed <13>Sep 27 09:09:07 rpmi: python3-base-3.7.4-alt3 p9+249932.100.2.1 1587127349 installed <13>Sep 27 09:09:07 rpmi: glib2-devel-2.60.7-alt1 p9+237353.100.2.2 1568373081 installed <13>Sep 27 09:09:07 rpmi: libharfbuzz-devel-2.6.2-alt1 p9+238790.200.1.1 1570435826 installed <13>Sep 27 09:09:07 rpmi: libfreetype-devel-2.10.1-alt1.1.p9 p9+257445.200.2.1 1599282976 installed <13>Sep 27 09:09:07 rpmi: fontconfig-devel-2.13.1-alt1 p9+247340.200.3.1 1583400517 installed <13>Sep 27 09:09:07 rpmi: libtirpc-1.0.3-alt1 1532008017 installed <13>Sep 27 09:09:07 rpmi: libnsl2-1.1.0-alt1_1 1511548749 installed <13>Sep 27 09:09:07 rpmi: python-modules-compiler-2.7.16-alt1.M90P.1 p9+244933.100.1.1 1579867218 installed <13>Sep 27 09:09:07 rpmi: python-modules-email-2.7.16-alt1.M90P.1 p9+244933.100.1.1 1579867218 installed <13>Sep 27 09:09:07 rpmi: python-modules-unittest-2.7.16-alt1.M90P.1 p9+244933.100.1.1 1579867218 installed <13>Sep 27 09:09:07 rpmi: python-modules-encodings-2.7.16-alt1.M90P.1 p9+244933.100.1.1 1579867218 installed <13>Sep 27 09:09:08 rpmi: python-modules-2.7.16-alt1.M90P.1 p9+244933.100.1.1 1579867218 installed <13>Sep 27 09:09:08 rpmi: python-modules-nis-2.7.16-alt1.M90P.1 p9+244933.100.1.1 1579867218 installed <13>Sep 27 09:09:08 rpmi: python-modules-xml-2.7.16-alt1.M90P.1 p9+244933.100.1.1 1579867218 installed <13>Sep 27 09:09:08 rpmi: python-modules-hotshot-2.7.16-alt1.M90P.1 p9+244933.100.1.1 1579867218 installed <13>Sep 27 09:09:08 rpmi: python-modules-bsddb-2.7.16-alt1.M90P.1 p9+244933.100.1.1 1579867218 installed <13>Sep 27 09:09:08 rpmi: python-modules-ctypes-2.7.16-alt1.M90P.1 p9+244933.100.1.1 1579867218 installed <13>Sep 27 09:09:08 rpmi: python-modules-multiprocessing-2.7.16-alt1.M90P.1 p9+244933.100.1.1 1579867218 installed <13>Sep 27 09:09:08 rpmi: python-modules-logging-2.7.16-alt1.M90P.1 p9+244933.100.1.1 1579867218 installed <13>Sep 27 09:09:08 rpmi: python-2.7.16-alt1.M90P.1 p9+244933.100.1.1 1579867218 installed <13>Sep 27 09:09:08 rpmi: python-modules-distutils-2.7.16-alt1.M90P.1 p9+244933.100.1.1 1579867218 installed <13>Sep 27 09:09:08 rpmi: libnsl2-devel-1.1.0-alt1_1 1511548749 installed <86>Sep 27 09:09:08 groupadd[1271040]: group added to /etc/group: name=sasl, GID=498 <86>Sep 27 09:09:08 groupadd[1271040]: group added to /etc/gshadow: name=sasl <86>Sep 27 09:09:08 groupadd[1271040]: new group: name=sasl, GID=498 <13>Sep 27 09:09:08 rpmi: libsasl2-3-2.1.27-alt2.1 p9+256192.100.1.1 1597226720 installed <13>Sep 27 09:09:08 rpmi: libldap-2.4.48-alt3 p9+238817.100.1.1 1570449122 installed <13>Sep 27 09:09:08 rpmi: libcurl-7.71.0-alt1 p9+253931.100.3.1 1595484167 installed <13>Sep 27 09:09:08 rpmi: libarchive13-3.4.3-alt1 p9+258567.100.2.1 1600968903 installed <13>Sep 27 09:09:09 rpmi: cmake-3.16.3-alt1 p9+245760.100.3.1 1582902678 installed <13>Sep 27 09:09:09 rpmi: python-dev-2.7.16-alt1.M90P.1 p9+244933.100.1.1 1579867218 installed <13>Sep 27 09:09:09 rpmi: libcairo-devel-1:1.16.0-alt1 sisyphus+226534.100.2.3 1554515535 installed <13>Sep 27 09:09:09 rpmi: gcc-c++-8-alt2 p9+246536.100.3.1 1582643803 installed <13>Sep 27 09:09:09 rpmi: libwxGTK-devel-2:2.8.12-alt1.svn20131012.5 1504027601 installed <13>Sep 27 09:09:09 rpmi: libxml2-devel-1:2.9.10-alt2 p9+240157.100.1.1 1572735327 installed <13>Sep 27 09:09:09 rpmi: eigen2-2.0.17-alt2.S1 1492087697 installed Building target platforms: i586 Building for target i586 Wrote: /usr/src/in/nosrpm/openbabel-2.4.1-alt4.nosrc.rpm Installing openbabel-2.4.1-alt4.src.rpm Building target platforms: i586 Building for target i586 Executing(%prep): /bin/sh -e /usr/src/tmp/rpm-tmp.51130 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + rm -rf openbabel-2.4.1 + echo 'Source #0 (openbabel-2.4.1.tar.gz):' Source #0 (openbabel-2.4.1.tar.gz): + /bin/gzip -dc /usr/src/RPM/SOURCES/openbabel-2.4.1.tar.gz + /bin/tar -xf - + cd openbabel-2.4.1 + /bin/chmod -c -Rf u+rwX,go-w . + echo 'Patch #1 (openbabel-2.4.1-upstream-gcc-version-1.patch):' Patch #1 (openbabel-2.4.1-upstream-gcc-version-1.patch): + /usr/bin/patch -p1 patching file CMakeLists.txt + echo 'Patch #2 (openbabel-2.4.1-upstream-gcc-version-2.patch):' Patch #2 (openbabel-2.4.1-upstream-gcc-version-2.patch): + /usr/bin/patch -p1 patching file CMakeLists.txt Hunk #3 succeeded at 232 (offset -1 lines). patching file cmake/modules/MacroEnsureVersion.cmake + echo 'Patch #3 (openbabel-2.4.1-narrowing-conversion.patch):' Patch #3 (openbabel-2.4.1-narrowing-conversion.patch): + /usr/bin/patch -p1 patching file src/formats/pngformat.cpp patching file src/formats/yasaraformat.cpp + echo PYTHON_BINDINGS:BOOL=ON + exit 0 Executing(%build): /bin/sh -e /usr/src/tmp/rpm-tmp.37227 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd openbabel-2.4.1 + cmake . -DCMAKE_SKIP_RPATH:BOOL=ON -DCMAKE_SKIP_INSTALL_RPATH:BOOL=yes '-DCMAKE_C_FLAGS:STRING=-pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2' '-DCMAKE_CXX_FLAGS:STRING=-pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2' '-DCMAKE_Fortran_FLAGS:STRING=-pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2' -DCMAKE_INSTALL_PREFIX=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX= -DLIB_DESTINATION=lib -- The C compiler identification is GNU 8.4.1 -- The CXX compiler identification is GNU 8.4.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Deprecation Warning at CMakeLists.txt:11 (cmake_policy): The OLD behavior for policy CMP0005 will be removed from a future version of CMake. The cmake-policies(7) manual explains that the OLD behaviors of all policies are deprecated and that a policy should be set to OLD only under specific short-term circumstances. Projects should be ported to the NEW behavior and not rely on setting a policy to OLD. CMake Deprecation Warning at CMakeLists.txt:13 (cmake_policy): The OLD behavior for policy CMP0042 will be removed from a future version of CMake. The cmake-policies(7) manual explains that the OLD behaviors of all policies are deprecated and that a policy should be set to OLD only under specific short-term circumstances. Projects should be ported to the NEW behavior and not rely on setting a policy to OLD. -- Using included inchi library. -- Found LibXml2: /usr/lib/libxml2.so (found version "2.9.10") -- Found ZLIB: /usr/lib/libz.so (found version "1.2.11") -- Found wxWidgets: -pthread;;;-lwx_baseu-2.8;-lwx_gtk2u_core-2.8;-lwx_gtk2u_adv-2.8 (found version "2.8.12") -- Looking for conio.h -- Looking for conio.h - not found -- Looking for sys/time.h -- Looking for sys/time.h - found -- Looking for time.h -- Looking for time.h - found -- Looking for strings.h -- Looking for strings.h - found -- Looking for rpc/xdr.h -- Looking for rpc/xdr.h - found -- Looking for regex.h -- Looking for regex.h - found -- Looking for C++ include sstream -- Looking for C++ include sstream - found -- Looking for rint -- Looking for rint - not found -- Looking for snprintf -- Looking for snprintf - found -- Looking for sranddev -- Looking for sranddev - not found -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strncasecmp -- Looking for strncasecmp - found -- Looking for dlopen in dl -- Looking for dlopen in dl - found -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of clock_t -- Check size of clock_t - done -- Performing Test SCANDIR_NEEDS_CONST -- Performing Test SCANDIR_NEEDS_CONST - Failed -- Performing Test HAVE_GCC_VISIBILITY -- Performing Test HAVE_GCC_VISIBILITY - Success -- Checking available shared pointer... -- Performing Test HAVE_STD_SHARED_PTR -- Performing Test HAVE_STD_SHARED_PTR - Success -- Performing Test HAVE_STD_TR1_SHARED_PTR -- Performing Test HAVE_STD_TR1_SHARED_PTR - Failed -- Performing Test HAVE_STD_TR1_SHARED_PTR_IN_TR1_HEADER -- Performing Test HAVE_STD_TR1_SHARED_PTR_IN_TR1_HEADER - Success -- Use std::shared_ptr in memory -- Could NOT find Eigen3 (missing: EIGEN3_INCLUDE_DIR EIGEN3_VERSION_OK) (Required is at least version "2.91.0") -- Found Eigen2: /usr/include/eigen2 (Required is at least version "2.0.0") -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.2") -- Checking for module 'cairo' -- Found cairo, version 1.16.0 Package libpcre was not found in the pkg-config search path. Perhaps you should add the directory containing `libpcre.pc' to the PKG_CONFIG_PATH environment variable Package 'libpcre', required by 'glib-2.0', not found Package libpcre was not found in the pkg-config search path. Perhaps you should add the directory containing `libpcre.pc' to the PKG_CONFIG_PATH environment variable Package 'libpcre', required by 'glib-2.0', not found Package libpcre was not found in the pkg-config search path. Perhaps you should add the directory containing `libpcre.pc' to the PKG_CONFIG_PATH environment variable Package 'libpcre', required by 'glib-2.0', not found Package libpcre was not found in the pkg-config search path. Perhaps you should add the directory containing `libpcre.pc' to the PKG_CONFIG_PATH environment variable Package 'libpcre', required by 'glib-2.0', not found -- Found Cairo: /usr/lib/libcairo.so -- Cairo found. PNG output will be supported. -- Looking for getopt -- Looking for getopt - found -- Attempting to build the GUI -- wxWidgets found => GUI will be built -- Found PythonInterp: /usr/bin/python (found version "2.7.16") -- Found PythonLibs: /usr/lib/libpython2.7.so (found version "2.7.16") -- Python bindings will be compiled -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS CMAKE_SKIP_INSTALL_RPATH LIB_DESTINATION SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /usr/src/RPM/BUILD/openbabel-2.4.1 + make -j8 VERBOSE=1 make: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' /usr/bin/cmake -S/usr/src/RPM/BUILD/openbabel-2.4.1 -B/usr/src/RPM/BUILD/openbabel-2.4.1 --check-build-system CMakeFiles/Makefile.cmake 0 make: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' /usr/bin/cmake -E cmake_progress_start /usr/src/RPM/BUILD/openbabel-2.4.1/CMakeFiles /usr/src/RPM/BUILD/openbabel-2.4.1/CMakeFiles/progress.marks make: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f CMakeFiles/Makefile2 all make -f src/CMakeFiles/openbabel.dir/build.make src/CMakeFiles/openbabel.dir/depend make -f src/formats/libinchi/CMakeFiles/inchi.dir/build.make src/formats/libinchi/CMakeFiles/inchi.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src /usr/src/RPM/BUILD/openbabel-2.4.1/src/CMakeFiles/openbabel.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/CMakeFiles/openbabel.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/CMakeFiles/openbabel.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/CMakeFiles/openbabel.dir/depend.internal". Scanning dependencies of target openbabel make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/CMakeFiles/openbabel.dir/build.make src/CMakeFiles/openbabel.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/CMakeFiles/inchi.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/CMakeFiles/inchi.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/CMakeFiles/inchi.dir/depend.internal". 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Scanning dependencies of target inchi make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/libinchi/CMakeFiles/inchi.dir/build.make src/formats/libinchi/CMakeFiles/inchi.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 2%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichi_io.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/ichi_io.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichi_io.c make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 0%] Building CXX object src/CMakeFiles/openbabel.dir/base.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/base.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/base.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 1%] Building CXX object src/CMakeFiles/openbabel.dir/bond.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/bond.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/bond.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 0%] Building CXX object src/CMakeFiles/openbabel.dir/bitvec.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/bitvec.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/bitvec.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 1%] Building CXX object src/CMakeFiles/openbabel.dir/bondtyper.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/bondtyper.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/bondtyper.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/chargemodel.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/chargemodel.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/chargemodel.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 0%] Building CXX object src/CMakeFiles/openbabel.dir/atom.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/atom.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/atom.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/atom.cpp: In member function 'int OpenBabel::OBAtom::HighestBondOrder()': /usr/src/RPM/BUILD/openbabel-2.4.1/src/atom.cpp:306:24: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] if(bond->GetBO() > highest) ~~~~~~~~~~~~~~^~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 2%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichican2.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/ichican2.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichican2.c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichican2.c: In function 'CtPartFill': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichican2.c:1250:27: warning: variable 'rj_prev' set but not used [-Wunused-but-set-variable] AT_RANK r, rj, nn, j, rj_prev; ^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichican2.c: In function 'CtPartCompare': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichican2.c:1449:39: warning: variable 'len_iso_sort_key' set but not used [-Wunused-but-set-variable] int diff, i, k1, k2, lenNumH, len_iso_sort_key, /*mid_iso_sort_key,*/ midAt; ^~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichican2.c:1449:26: warning: variable 'k2' set but not used [-Wunused-but-set-variable] int diff, i, k1, k2, lenNumH, len_iso_sort_key, /*mid_iso_sort_key,*/ midAt; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichican2.c:1449:22: warning: variable 'k1' set but not used [-Wunused-but-set-variable] int diff, i, k1, k2, lenNumH, len_iso_sort_key, /*mid_iso_sort_key,*/ midAt; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichican2.c: In function 'CtFullCompare': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichican2.c:1839:51: warning: variable 'len_iso_sort_key' set but not used [-Wunused-but-set-variable] int len_iso_sort_key1, len_iso_sort_key2, len_iso_sort_key /*, mid_iso_sort_key*/; ^~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichican2.c:1838:50: warning: variable 'lenNumH' set but not used [-Wunused-but-set-variable] int diff, i, k1, k2, lenNumH1, lenNumH2, lenNumH, maxVert /* min num atoms */; ^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichican2.c:1837:13: warning: variable 'midAt' set but not used [-Wunused-but-set-variable] midAt /* end of atoms only */; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichican2.c: In function 'CtPartCopy': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichican2.c:2079:23: warning: variable 'endAt1' set but not used [-Wunused-but-set-variable] int startAt1, endAt1, startAt2, endAt2; /*endCt,*/ ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichican2.c:2077:33: warning: variable 'endCt1' set but not used [-Wunused-but-set-variable] int startCt1, startCt2, endCt1, endCt2; ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichican2.c: In function 'CanonGraph': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichican2.c:2965:17: warning: variable 'qzb_rho_temp' set but not used [-Wunused-but-set-variable] int qzb_rho_temp = 0; ^~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichican2.c:3074:22: warning: the address of 'kLeast_rho_fix' will always evaluate as 'true' [-Waddress] if ( pzb_rho_fix && kLeast_rho_fix && 0 == qzb_rho_fix ) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichican2.c:3076:14: warning: the address of 'kLeast_rho_fix' will always evaluate as 'true' [-Waddress] if ( kLeast_rho_fix ) { ^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichican2.c:3114:10: warning: the address of 'kLeast_rho' will always evaluate as 'true' [-Waddress] if ( kLeast_rho ) { ^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichican2.c:2687:15: warning: 'tvh' may be used uninitialized in this function [-Wmaybe-uninitialized] Node tvc, tvh; ^~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichican2.c:3186:8: warning: 'tvc' may be used uninitialized in this function [-Wmaybe-uninitialized] if ( tvc == GetUnorderedPartitionMcrNode( &theta, tvc ) ) ^ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 1%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichi_bns.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/ichi_bns.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichi_bns.c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichi_bns.c: In function 'SubtractOrChangeAtHChargeBNS': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichi_bns.c:928:21: warning: variable 'type' set but not used [-Wunused-but-set-variable] int mask, type; ^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichi_bns.c: In function 'MarkAtomsAtTautGroups': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichi_bns.c:1121:44: warning: variable 'ineigh2' set but not used [-Wunused-but-set-variable] int pass, i, j, v1, v2, ineigh1, ineigh2, vLast, vFirst, n, delta, err = 0; ^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichi_bns.c: In function 'RestoreBnStructFlow': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichi_bns.c:1272:41: warning: variable 'ineigh2' set but not used [-Wunused-but-set-variable] int pass, i, v1, v2, ineigh1, ineigh2, vLast, n, delta, ret, err = 0; ^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichi_bns.c: In function 'BnsTestAndMarkAltBonds': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichi_bns.c:1524:16: warning: variable 'bSuccess' set but not used [-Wunused-but-set-variable] int iedge, bSuccess, bError, nDots, nChanges, bTestForNonStereoBond; ^~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichi_bns.c: In function 'fix_special_bonds': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichi_bns.c:1814:27: warning: variable 'n4' set but not used [-Wunused-but-set-variable] int i, k, n1, n2, n3, n4, i1, i2, i3, i4, bond_type; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichi_bns.c: In function 'is_Z_atom': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichi_bns.c:2295:7: warning: typedef 'Z_ELNUMBER' locally defined but not used [-Wunused-local-typedefs] } Z_ELNUMBER; ^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichi_bns.c: In function 'mark_alt_bonds_and_taut_groups': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichi_bns.c:4236:10: warning: variable 'nOrigDelta' set but not used [-Wunused-but-set-variable] int nOrigDelta, num_changed_bonds; ^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichi_bns.c: In function 'SetRadEndpoints': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichi_bns.c:6438:23: warning: variable 'num_new_edges' set but not used [-Wunused-but-set-variable] int ret, i, j, k, num_new_edges, delta; ^~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichi_bns.c: In function 'SetRadEndpoints2': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichi_bns.c:6522:30: warning: variable 'num_new_edges' set but not used [-Wunused-but-set-variable] int ret = 0, i, j, k, n, num_new_edges, delta = 1; ^~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichi_bns.c: In function 'EliminatePlusMinusChargeAmbiguity': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichi_bns.c:768:56: warning: 'cgNeg' may be used uninitialized in this function [-Wmaybe-uninitialized] pBNS->vert[cgNeg].st_edge.cap -= dflow; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichi_bns.c:764:56: warning: 'cgPos' may be used uninitialized in this function [-Wmaybe-uninitialized] pBNS->vert[cgPos].st_edge.cap += dflow; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichi_bns.c: In function 'fix_special_bonds': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichi_bns.c:1923:61: warning: 'k_N' may be used uninitialized in this function [-Wmaybe-uninitialized] BOND_TYPE_DOUBLE == (at[i].bond_type[i1=j[k_N]] & BOND_TYPE_MASK ) ) { ~~^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichi_bns.c:1959:48: warning: 'i2' may be used uninitialized in this function [-Wmaybe-uninitialized] iedge = pBNS->vert[i].iedge[i2]; ^ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichi_bns.c:2062:38: warning: 'n2' may be used uninitialized in this function [-Wmaybe-uninitialized] 0 <= ( i4 = nNoMetalOtherNeighIndex2( at, i, n2, n3) ) ) { ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 3%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichicano.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/ichicano.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichicano.c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichicano.c: In function 'FillTautLinearCT2': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichicano.c:732:30: warning: variable 'num_num' set but not used [-Wunused-but-set-variable] int i, j, len=0, g, num_num, offset, max_len = 0, len_iso=0; ^~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 3%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiisot.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/ichiisot.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiisot.c make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 0%] Building CXX object src/CMakeFiles/openbabel.dir/alias.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/alias.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/alias.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 3%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichicans.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/ichicans.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichicans.c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichicans.c: In function 'UnmarkNonStereo': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichicans.c:324:42: warning: 'j' may be used uninitialized in this function [-Wmaybe-uninitialized] nPrevAtomRank = nRank[j]; ^ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/chiral.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/chiral.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/chiral.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 4%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichimak2.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/ichimak2.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichimak2.c make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 4%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichilnct.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/ichilnct.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichilnct.c In file included from /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichilnct.c:69: /usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi/aux2atom.h: In function 'll_INChIToInchi_Atom': /usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi/aux2atom.h:1024:41: warning: variable 'num_iso_H' set but not used [-Wunused-but-set-variable] int num_iso_H; ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi/aux2atom.h:1220:47: warning: variable 'n' set but not used [-Wunused-but-set-variable] int a, n, j, /* k,*/ sb_ord, cur_neigh, min_neigh; ^ /usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi/aux2atom.h:2056:41: warning: variable 'num_iso_H' set but not used [-Wunused-but-set-variable] int num_iso_H; ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi/aux2atom.h:2252:47: warning: variable 'n' set but not used [-Wunused-but-set-variable] int a, n, j, /* k,*/ sb_ord, cur_neigh, min_neigh; ^ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichilnct.c: In function 'INChIToInchi_Input': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichilnct.c:206:21: warning: variable 'szCoordOld' set but not used [-Wunused-but-set-variable] MOL_COORD *szCoordOld = NULL; ^~~~~~~~~~ In file included from /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichilnct.c:69: /usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi/aux2atom.h: In function 'Extract0DParities': /usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi/aux2atom.h:2731:47: warning: 'sb_ord_from_i1' may be used uninitialized in this function [-Wmaybe-uninitialized] at[i1].sb_ord[j1] = sb_ord_from_i1; ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 2%] Building CXX object src/CMakeFiles/openbabel.dir/chains.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/chains.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/chains.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/chains.cpp: In member function 'void OpenBabel::OBChainsParser::ConstrainBackbone(OpenBabel::OBMol&, OpenBabel::Template*, int)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/chains.cpp:1271:51: warning: 'nd' may be used uninitialized in this function [-Wmaybe-uninitialized] result = Match4Constraints(pep,na,nb,nc,nd); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/chains.cpp:1273:51: warning: 'nc' may be used uninitialized in this function [-Wmaybe-uninitialized] result = Match3Constraints(pep,na,nb,nc); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/chains.cpp:1275:51: warning: 'nb' may be used uninitialized in this function [-Wmaybe-uninitialized] result = Match2Constraints(pep,na,nb); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/chains.cpp:1277:49: warning: 'na' may be used uninitialized in this function [-Wmaybe-uninitialized] result = MatchConstraint(na,pep->n1); ~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/chains.cpp: In member function 'void OpenBabel::OBChainsParser::TracePeptideChain(OpenBabel::OBMol&, unsigned int, int)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/chains.cpp:1441:36: warning: 'na' may be used uninitialized in this function [-Wmaybe-uninitialized] TracePeptideChain(mol,na,r); ~~~~~~~~~~~~~~~~~^~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/data_utilities.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/data_utilities.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/data_utilities.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/data_utilities.cpp: In function 'bool OpenBabel::extract_thermochemistry(OpenBabel::OBMol&, bool, int*, int, double, double*, double*, double*, double*, double*, double*, double*, double*, std::vector&)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/data_utilities.cpp:125:26: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] for(int i = 0; (i::type Packet; ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/builder.cpp: In member function 'bool OpenBabel::OBBuilder::Build(OpenBabel::OBMol&, bool)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/builder.cpp:1060:32: warning: 'match_idx' may be used uninitialized in this function [-Wmaybe-uninitialized] match_indices[0] = match_idx; make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 4%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichimake.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/ichimake.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichimake.c make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 5%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichimap2.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/ichimap2.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichimap2.c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichimap2.c: In function 'parity_of_mapped_atom2': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichimap2.c:898:27: warning: variable 'num_trans_from' set but not used [-Wunused-but-set-variable] int num_trans_to, num_trans_from, neigh1, neigh2; ^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichimap2.c: In function 'BreakNeighborsTie': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichimap2.c:1228:25: warning: variable 'other_neig_ord' set but not used [-Wunused-but-set-variable] int other_neigh[2], other_neig_ord[2], num_other_neigh; ^~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/data.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/data.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/data.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprint.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/fingerprint.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/fingerprint.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/fingerprint.cpp: In member function 'bool OpenBabel::FastSearch::Find(OpenBabel::OBBase*, std::vector&, unsigned int)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/fingerprint.cpp:161:48: warning: operation on 'ppat' may be undefined [-Wsequence-point] if ( (a=((*ppat) & (*p++)) ^ (*ppat++)) ) break; ~~~~^~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/format.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/format.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/format.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/descriptor.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/descriptor.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/descriptor.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 6%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichinorm.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/ichinorm.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichinorm.c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichinorm.c: In function 'remove_terminal_HDT': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichinorm.c:548:13: warning: variable 'old_trans' set but not used [-Wunused-but-set-variable] S_CHAR old_trans[MAX_NUM_STEREO_BONDS]; ^~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 5%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichimap4.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/ichimap4.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichimap4.c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichimap4.c: In function 'map_stereo_atoms4': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichimap4.c:1000:35: warning: variable 'prev_stereo_center_parity' set but not used [-Wunused-but-set-variable] int stereo_center_parity, prev_stereo_center_parity, sb_parity_calc, pass; ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichimap4.c: In function 'map_stereo_bonds4': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichimap4.c:788:33: warning: 'at_to_n2' may be used uninitialized in this function [-Wmaybe-uninitialized] CurTreeRemoveIfLastAtom( cur_tree, at_to_n2 ); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichimap4.c:863:26: warning: 'at_to_n1' may be used uninitialized in this function [-Wmaybe-uninitialized] CurTreeRemoveIfLastAtom( cur_tree, at_to_n1 ); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 7%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiparm.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/ichiparm.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiparm.c In file included from /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiparm.c:76: /usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi/ichiparm.h: In function 'ReadCommandLineParms': /usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi/ichiparm.h:100:19: warning: unused variable 'bDisplayCompositeResults' [-Wunused-variable] int bDisplayCompositeResults = 0; ^~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi/ichiparm.h:54:19: warning: variable 'nFontSize' set but not used [-Wunused-but-set-variable] int nFontSize = -9; ^~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 7%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiprt2.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/ichiprt2.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiprt2.c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiprt2.c: In function 'MakeIsoTautString': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiprt2.c:1234:13: warning: variable 'nMax' set but not used [-Wunused-but-set-variable] AT_NUMB nMax; ^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiprt2.c: In function 'MakeIsoHString': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiprt2.c:1320:13: warning: variable 'nMax' set but not used [-Wunused-but-set-variable] AT_NUMB nMax; ^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiprt2.c: In function 'abctol': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiprt2.c:1505:17: warning: variable 'sign' set but not used [-Wunused-but-set-variable] long sign = 1; ^~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 2%] Building CXX object src/CMakeFiles/openbabel.dir/canon.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/canon.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/canon.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/canon.cpp: In constructor 'OpenBabel::CanonicalLabelsImpl::State::State(const std::vector&, const OpenBabel::OBBitVec&, std::vector&, std::vector&, OpenBabel::CanonicalLabelsImpl::Orbits&, OpenBabel::OBBitVec&, bool)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/canon.cpp:710:34: warning: 'OpenBabel::CanonicalLabelsImpl::State::stereoCenters' will be initialized after [-Wreorder] std::vector &stereoCenters; ^~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/canon.cpp:704:18: warning: 'const bool OpenBabel::CanonicalLabelsImpl::State::onlyOne' [-Wreorder] const bool onlyOne; ^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/canon.cpp:685:7: warning: when initialized here [-Wreorder] State(const std::vector &_symmetry_classes, ^~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/grid.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/grid.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/grid.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/griddata.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/griddata.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/griddata.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/locale.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/locale.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/locale.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 7%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiprt1.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/ichiprt1.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiprt1.c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiprt1.c: In function 'OutputINChI1': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiprt1.c:1448:34: warning: variable 'bCurIsoStereo' set but not used [-Wunused-but-set-variable] int bCurIso, bCurStereo, bCurIsoStereo, bCurHasIsoStereo /* Fix14 */, bCurTaut /*, bCurTaut2*/; ^~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiprt1.c:1448:22: warning: variable 'bCurStereo' set but not used [-Wunused-but-set-variable] int bCurIso, bCurStereo, bCurIsoStereo, bCurHasIsoStereo /* Fix14 */, bCurTaut /*, bCurTaut2*/; ^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiprt1.c:1269:10: warning: variable 'bPlainTabbedOutput' set but not used [-Wunused-but-set-variable] int bPlainTabbedOutput; ^~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiprt1.c:1258:30: warning: variable 'max_num_comp' set but not used [-Wunused-but-set-variable] int num_comp[TAUT_NUM], max_num_comp; ^~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiprt1.c: In function 'WriteOrigBonds': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiprt1.c:3808:95: warning: variable 'num_trans' set but not used [-Wunused-but-set-variable] int j, k, k2, kk, len, cur_len, j2=0, bond_stereo, bond_char, bond_parity, bond_parityNM, num_trans; ^~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/graphsym.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/graphsym.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/graphsym.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 9%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiqueu.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/ichiqueu.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiqueu.c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiqueu.c: In function 'DFS_FindTautInARing': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiqueu.c:369:18: warning: variable 'nRingSystem' set but not used [-Wunused-but-set-variable] AT_RANK nRingSystem; ^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiqueu.c: In function 'DFS_FindTautAltPath': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiqueu.c:486:18: warning: variable 'nRingSystem' set but not used [-Wunused-but-set-variable] AT_RANK nRingSystem; ^~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 7%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiprt3.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/ichiprt3.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiprt3.c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiprt3.c: In function 'str_AuxInvSp3Numb': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiprt3.c:1400:32: warning: variable 'pINChI_Aux_Prev' set but not used [-Wunused-but-set-variable] INChI_Aux *pINChI_Aux, *pINChI_Aux_Prev, *pINChI_Aux_Taut; ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiprt3.c: In function 'str_AuxIsoNumb': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiprt3.c:1539:32: warning: variable 'pINChI_Aux_Prev' set but not used [-Wunused-but-set-variable] INChI_Aux *pINChI_Aux, *pINChI_Aux_Prev, *pINChI_Aux_Taut; ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiprt3.c:1538:29: warning: variable 'pINChI_Taut' set but not used [-Wunused-but-set-variable] INChI *pINChI, *pINChI_Taut; ^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiprt3.c:1538:19: warning: variable 'pINChI' set but not used [-Wunused-but-set-variable] INChI *pINChI, *pINChI_Taut; ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiprt3.c: In function 'str_AuxInvIsoSp3Numb': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiprt3.c:2132:32: warning: variable 'pINChI_Aux_Prev' set but not used [-Wunused-but-set-variable] INChI_Aux *pINChI_Aux, *pINChI_Aux_Prev, *pINChI_Aux_Taut; ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/matrix.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ 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-D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/ichiring.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiring.c make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/kekulize.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/kekulize.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/kekulize.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/kekulize.cpp: In function 'bool OpenBabel::expandKekulize(OpenBabel::OBMol*, int, std::vector&, std::vector&, OpenBabel::Kekulize::Timeout&)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/kekulize.cpp:742:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] if (bond_idx >= bondState.size()) ~~~~~~~~~^~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/generic.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/generic.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/generic.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/generic.cpp: In member function 'void OpenBabel::OBOrbitalData::LoadClosedShellOrbitals(std::vector, std::vector >, int)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/generic.cpp:1469:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] if (alphaHOMO > energies.size()) ~~~~~~~~~~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/generic.cpp:1485:15: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] if (i < alphaHOMO) ~~^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/generic.cpp: In member function 'void OpenBabel::OBOrbitalData::LoadAlphaOrbitals(std::vector, std::vector >, int)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/generic.cpp:1502:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] if (alphaHOMO > energies.size()) ~~~~~~~~~~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/generic.cpp:1516:15: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] if (i < alphaHOMO) ~~^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/generic.cpp: In member function 'void OpenBabel::OBOrbitalData::LoadBetaOrbitals(std::vector, std::vector >, int)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/generic.cpp:1533:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] if (betaHOMO > energies.size()) ~~~~~~~~~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/generic.cpp:1547:15: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] if (i < betaHOMO) ~~^~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/molchrg.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/molchrg.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/molchrg.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 9%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr1.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/ichirvr1.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr1.c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr1.c: In function 'GetTgroupInfoFromInChI': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr1.c:569:16: warning: variable 'tiSymmRank' set but not used [-Wunused-but-set-variable] AT_NUMB *tiSymmRank = NULL; ^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr1.c:568:16: warning: variable 'tSymmRank' set but not used [-Wunused-but-set-variable] AT_NUMB *tSymmRank = NULL; ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr1.c:566:47: warning: variable 'bIso' set but not used [-Wunused-but-set-variable] int ret, i, j, k, itg, num_atoms, len_tg, bIso, num_t_groups; ^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr1.c: In function 'GetAtomRestoreInfo': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr1.c:853:9: warning: variable 'nLastFoundValenceOrdNumber' set but not used [-Wunused-but-set-variable] int nLastFoundValenceOrdNumber, nLastFoundValenceState; ^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr1.c:852:37: warning: variable 'nFoundNeutralValenceOrdNumber' set but not used [-Wunused-but-set-variable] int nFoundNeutralValenceExcess, nFoundNeutralValenceOrdNumber; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr1.c:851:37: warning: variable 'nFirstNeutralValenceExcess' set but not used [-Wunused-but-set-variable] int nOctetNeutralValenceExcess, nFirstNeutralValenceExcess; ^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr1.c:851:9: warning: variable 'nOctetNeutralValenceExcess' set but not used [-Wunused-but-set-variable] int nOctetNeutralValenceExcess, nFirstNeutralValenceExcess; ^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr1.c:849:46: warning: variable 'num_non_bonding_electrons' set but not used [-Wunused-but-set-variable] int i, j, j2, k, k2, charge, cur_charge, num_non_bonding_electrons; ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr1.c:849:26: warning: variable 'charge' set but not used [-Wunused-but-set-variable] int i, j, j2, k, k2, charge, cur_charge, num_non_bonding_electrons; ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr1.c: In function 'nCountBnsSizes': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr1.c:1687:39: warning: variable 'metal_group_number' set but not used [-Wunused-but-set-variable] int type, neigh_type, metal_group_number; ^~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr1.c: In function 'AddRadicalToMetal': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr1.c:2310:39: warning: variable 'pG2' set but not used [-Wunused-but-set-variable] BNS_VERTEX *pG0=NULL, *pG1=NULL, *pG2=NULL, *pG3=NULL; ^~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr1.c:2310:28: warning: variable 'pG1' set but not used [-Wunused-but-set-variable] BNS_VERTEX *pG0=NULL, *pG1=NULL, *pG2=NULL, *pG3=NULL; ^~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr1.c:2310:17: warning: variable 'pG0' set but not used [-Wunused-but-set-variable] BNS_VERTEX *pG0=NULL, *pG1=NULL, *pG2=NULL, *pG3=NULL; ^~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr1.c: In function 'AddCGroups2TCGBnStruct': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr1.c:2793:20: warning: variable 'nMaxCGroupNumber' set but not used [-Wunused-but-set-variable] int nMaxCGroupNumber = 0; ^~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr1.c:2788:39: warning: variable 'j2' set but not used [-Wunused-but-set-variable] int i, i1, i2, j, j1, j2, k, k1, k2, n, c_point, c_neigh, cap, flow; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr1.c:2788:35: warning: variable 'j1' set but not used [-Wunused-but-set-variable] int i, i1, i2, j, j1, j2, k, k1, k2, n, c_point, c_neigh, cap, flow; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr1.c:2774:24: warning: variable 'ret2' set but not used [-Wunused-but-set-variable] int ret = 0, ret1, ret2, ret3, bNeedsFlower; ^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr1.c:2774:18: warning: variable 'ret1' set but not used [-Wunused-but-set-variable] int ret = 0, ret1, ret2, ret3, bNeedsFlower; ^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr1.c: In function 'AllocateAndInitTCGBnStruct': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr1.c:3278:9: warning: variable 'max_tg' set but not used [-Wunused-but-set-variable] int max_tg, max_edges, max_vertices, len_alt_path, max_iedges, num_iedges, num_altp; ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr1.c:3276:63: warning: variable 'flag_alt_bond' set but not used [-Wunused-but-set-variable] int f1, f2, c1, c2, edge_cap, edge_flow, st_cap, st_flow, flag_alt_bond; ^~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr1.c: In function 'EvaluateChargeChanges': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr1.c:3627:27: warning: variable 'v0' set but not used [-Wunused-but-set-variable] int pass, i, j, v0, v1, v2, v, ineigh1, /*ineigh2,*/ vLast, n, delta, ret, ie, err = 0; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr1.c: In function 'RunBnsTestOnce': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr1.c:3786:21: warning: variable 'ret2' set but not used [-Wunused-but-set-variable] int delta, ret, ret2, pass; ^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr1.c: In function 'DisconnectedConnectedH': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr1.c:4609:31: warning: variable 'num_iso_H' set but not used [-Wunused-but-set-variable] int i, j, k, n, m, num_H, num_iso_H; ^~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/forcefield.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/forcefield.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefield.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefield.cpp: In static member function 'static bool OpenBabel::OBForceField::IgnoreCalculation(int, int)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefield.cpp:384:21: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] if (_ignoreAtom == a) ~~~~~~~~~~~~^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefield.cpp:386:21: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] if (_ignoreAtom == b) ~~~~~~~~~~~~^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefield.cpp: In static member function 'static bool OpenBabel::OBForceField::IgnoreCalculation(int, int, int)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefield.cpp:396:21: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] if (_ignoreAtom == b) ~~~~~~~~~~~~^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefield.cpp: In static member function 'static bool OpenBabel::OBForceField::IgnoreCalculation(int, int, int, int)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefield.cpp:406:21: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] if (_ignoreAtom == d) ~~~~~~~~~~~~^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefield.cpp: In member function 'int OpenBabel::OBFFConstraints::GetConstraintType(int) const': /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefield.cpp:658:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] if (index >= _constraints.size()) ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefield.cpp: In member function 'double OpenBabel::OBFFConstraints::GetConstraintValue(int) const': /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefield.cpp:666:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] if (index >= _constraints.size()) ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefield.cpp: In member function 'int OpenBabel::OBFFConstraints::GetConstraintAtomA(int) const': /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefield.cpp:674:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] if (index >= _constraints.size()) ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefield.cpp: In member function 'int OpenBabel::OBFFConstraints::GetConstraintAtomB(int) const': /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefield.cpp:682:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] if (index >= _constraints.size()) ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefield.cpp: In member function 'int OpenBabel::OBFFConstraints::GetConstraintAtomC(int) const': /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefield.cpp:690:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] if (index >= _constraints.size()) ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefield.cpp: In member function 'int OpenBabel::OBFFConstraints::GetConstraintAtomD(int) const': /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefield.cpp:698:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] if (index >= _constraints.size()) ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefield.cpp: In member function 'int OpenBabel::OBForceField::FastRotorSearch(bool)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefield.cpp:1346:55: warning: array subscript has type 'char' [-Wchar-subscripts] num_permutations = factorial[num_rotors_to_permute]; ^ /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefield.cpp:1350:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] for (int i=0; i::size_type' {aka 'unsigned int'} [-Wsign-compare] for (int i=0; i >&, std::vector, double)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefield.cpp:1564:15: warning: comparison of integer expressions of different signedness: 'unsigned int' and '__gnu_cxx::__alloc_traits, int>::value_type' {aka 'int'} [-Wsign-compare] if (j == rotorKey[i]) /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefield.cpp:1583:15: warning: comparison of integer expressions of different signedness: 'unsigned int' and '__gnu_cxx::__alloc_traits, int>::value_type' {aka 'int'} [-Wsign-compare] if (j == rotorKey[i]) /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefield.cpp: In member function 'void OpenBabel::OBForceField::DistanceGeometry()': /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefield.cpp:1963:26: warning: variable 'l_bc' set but not used [-Wunused-but-set-variable] double l_ab, l_bc, l_ac; // lower limits ^~~~ In file included from /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefield.cpp:22: /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/forcefield.h: In member function 'void OpenBabel::OBFFConstraints::AddTorsionConstraint(int, int, int, int, double)': /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/forcefield.h:234:16: warning: 'constraint.OpenBabel::OBFFConstraint::rab0' may be used uninitialized in this function [-Wmaybe-uninitialized] class OBFPRT OBFFConstraint ^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/forcefield.h:234:16: warning: 'constraint.OpenBabel::OBFFConstraint::rbc0' may be used uninitialized in this function [-Wmaybe-uninitialized] /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/forcefield.h: In member function 'void OpenBabel::OBFFConstraints::AddIgnore(int)': /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/forcefield.h:234:16: warning: 'constraint.OpenBabel::OBFFConstraint::rab0' may be used uninitialized in this function [-Wmaybe-uninitialized] class OBFPRT OBFFConstraint ^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/forcefield.h:234:16: warning: 'constraint.OpenBabel::OBFFConstraint::rbc0' may be used uninitialized in this function [-Wmaybe-uninitialized] /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/forcefield.h: In member function 'void OpenBabel::OBFFConstraints::AddAtomYConstraint(int)': /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/forcefield.h:234:16: warning: 'constraint.OpenBabel::OBFFConstraint::rab0' may be used uninitialized in this function [-Wmaybe-uninitialized] class OBFPRT OBFFConstraint ^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/forcefield.h:234:16: warning: 'constraint.OpenBabel::OBFFConstraint::rbc0' may be used uninitialized in this function [-Wmaybe-uninitialized] /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/forcefield.h: In member function 'void OpenBabel::OBFFConstraints::AddAtomZConstraint(int)': /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/forcefield.h:234:16: warning: 'constraint.OpenBabel::OBFFConstraint::rab0' may be used uninitialized in this function [-Wmaybe-uninitialized] class OBFPRT OBFFConstraint ^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/forcefield.h:234:16: warning: 'constraint.OpenBabel::OBFFConstraint::rbc0' may be used uninitialized in this function [-Wmaybe-uninitialized] /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/forcefield.h: In member function 'void OpenBabel::OBFFConstraints::AddAtomConstraint(int)': /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/forcefield.h:234:16: warning: 'constraint.OpenBabel::OBFFConstraint::rab0' may be used uninitialized in this function [-Wmaybe-uninitialized] class OBFPRT OBFFConstraint ^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/forcefield.h:234:16: warning: 'constraint.OpenBabel::OBFFConstraint::rbc0' may be used uninitialized in this function [-Wmaybe-uninitialized] /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/forcefield.h: In member function 'void OpenBabel::OBFFConstraints::AddDistanceConstraint(int, int, double)': /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/forcefield.h:234:16: warning: 'constraint.OpenBabel::OBFFConstraint::rab0' may be used uninitialized in this function [-Wmaybe-uninitialized] class OBFPRT OBFFConstraint ^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/forcefield.h:234:16: warning: 'constraint.OpenBabel::OBFFConstraint::rbc0' may be used uninitialized in this function [-Wmaybe-uninitialized] /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/forcefield.h: In member function 'void OpenBabel::OBFFConstraints::AddAtomXConstraint(int)': /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/forcefield.h:234:16: warning: 'constraint.OpenBabel::OBFFConstraint::rab0' may be used uninitialized in this function [-Wmaybe-uninitialized] class OBFPRT OBFFConstraint ^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/forcefield.h:234:16: warning: 'constraint.OpenBabel::OBFFConstraint::rbc0' may be used uninitialized in this function [-Wmaybe-uninitialized] /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/forcefield.h: In member function 'void OpenBabel::OBFFConstraints::AddAngleConstraint(int, int, int, double)': /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/forcefield.h:234:16: warning: 'constraint.OpenBabel::OBFFConstraint::rab0' may be used uninitialized in this function [-Wmaybe-uninitialized] class OBFPRT OBFFConstraint ^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/forcefield.h:234:16: warning: 'constraint.OpenBabel::OBFFConstraint::rbc0' may be used uninitialized in this function [-Wmaybe-uninitialized] /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefield.cpp: In member function 'int OpenBabel::OBForceField::FastRotorSearch(bool)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefield.cpp:1403:11: warning: 'minE' may be used uninitialized in this function [-Wmaybe-uninitialized] if (minE < best_minE) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefield.cpp:1386:27: warning: 'minj' may be used uninitialized in this function [-Wmaybe-uninitialized] rotorKey[idx + 1] = minj; make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/oberror.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/oberror.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/oberror.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 9%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiread.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/ichiread.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiread.c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiread.c: In function 'ReadWriteInChI': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiread.c:1040:22: warning: the address of 'szMessage' will always evaluate as 'true' [-Waddress] if ( szMessage ) ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiread.c:1074:55: warning: variable 'len' set but not used [-Wunused-but-set-variable] int iRec, iMob, iComp, nComp, len; ^~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiread.c:489:17: warning: variable 'pTAB' set but not used [-Wunused-but-set-variable] const char *pTAB; ^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiread.c:488:10: warning: variable 'bPlainTabbedOutput' set but not used [-Wunused-but-set-variable] int bPlainTabbedOutput; ^~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiread.c:480:18: warning: variable 'bStereoType' set but not used [-Wunused-but-set-variable] int pState, bStereoType; ^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiread.c: In function 'OutputInChIAsRequested': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiread.c:1414:53: warning: variable 'iINChI2' set but not used [-Wunused-but-set-variable] int j, k, k1, k2, ret2=0, iINChI, iINChI1, iINChI2; ^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiread.c: In function 'InChILine2Data': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiread.c:2304:51: warning: variable 'retAux' set but not used [-Wunused-but-set-variable] int iINChI, i, j, k, m, len1, len2, ret2 = 0, retAux = 0, stateAux = 0; ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiread.c: In function 'ReadInChICoord': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiread.c:4032:14: warning: variable 'fst' set but not used [-Wunused-but-set-variable] int c, fst, ret=RI_ERR_ALLOC; ^~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiread.c: In function 'ReadInChILine': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiread.c:4302:14: warning: variable 'fst' set but not used [-Wunused-but-set-variable] int c, fst, ret=RI_ERR_ALLOC, len; ^~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiread.c: In function 'ParseSegmentMobileH': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiread.c:6395:10: warning: variable 'num_open' set but not used [-Wunused-but-set-variable] int num_open, state, ret, nAltMobileH = ALT_TAUT(bMobileH); ^~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiread.c:6392:37: warning: variable 'nNumBonds' set but not used [-Wunused-but-set-variable] int nNumComponents, iComponent, nNumBonds, lenTautomer, tg_pos_Tautomer, iTGroup; ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiread.c: In function 'ParseSegmentConnections': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiread.c:6989:73: warning: variable 'iBond' set but not used [-Wunused-but-set-variable] int nNumComponents, iComponent, nNumAtoms, nNumBonds, lenConnTable, iBond; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiread.c: In function 'ParseSegmentIsoAtoms': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiread.c:5148:16: warning: 'len' may be used uninitialized in this function [-Wmaybe-uninitialized] if ( len != iAtom ) { ^ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiread.c: In function 'InChILine2Data': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiread.c:4414:42: warning: 'let2' may be used uninitialized in this function [-Wmaybe-uninitialized] if ( ( let2 >= 'A') && ( let2 <= 'D') ) /* letter-2 OK */ ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiread.c:4311:25: note: 'let2' was declared here unsigned char let1, let2; ^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichiread.c:4311:19: warning: 'let1' may be used uninitialized in this function [-Wmaybe-uninitialized] unsigned char let1, let2; ^~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 9%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr2.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/ichirvr2.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr2.c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr2.c: In function 'RestoreAtomConnectionsSetStereo': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr2.c:260:24: warning: operation on 'jv' may be undefined [-Wsequence-point] at[jv = at[n_vertex].neighbor[0]].valence + at[jv].num_H == 3 && ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr2.c:262:24: warning: operation on 'jn' may be undefined [-Wsequence-point] at[jn = at[n_vertex].neighbor[1]].valence + at[jn].num_H == 3 && ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr2.c:116:19: warning: variable 'num_stereo_bonds' set but not used [-Wunused-but-set-variable] int num_stereo_bonds, num_stereo_centers, num_stereo_bonds2, num_stereo_centers2; ^~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr2.c: In function 'AdjustTgroupsToForbiddenEdges2': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr2.c:2351:23: warning: variable 'ie' set but not used [-Wunused-but-set-variable] EdgeIndex ie, ie1, ie2; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr2.c:2455:23: warning: variable 'ie' set but not used [-Wunused-but-set-variable] EdgeIndex ie, ie1, ie2; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr2.c:1664:20: warning: variable 'bonds_valence' set but not used [-Wunused-but-set-variable] int num_bonds, bonds_valence; ^~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr2.c:1664:9: warning: variable 'num_bonds' set but not used [-Wunused-but-set-variable] int num_bonds, bonds_valence; ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr2.c: In function 'MovePlusFromS2DiaminoCarbon': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr2.c:3027:19: warning: operation on 'pvS' may be undefined [-Wsequence-point] (pvS = pBNS->vert+i)->st_edge.cap == pvS->st_edge.flow && ~~~~~^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr2.c: In function 'FixMetal_Nminus_Ominus': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr2.c:4002:44: warning: variable 'nDeltaChargeMax' set but not used [-Wunused-but-set-variable] int num_failed, num_success, n, nDeltaChargeMax, nMetalCharge; ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr2.c: In function 'EliminateNitrogen5Val3Bonds': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr2.c:4765:31: warning: variable 'pv1' set but not used [-Wunused-but-set-variable] BNS_VERTEX *pv0, *pv1, *pv2 = NULL; ^~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr2.c:4764:59: warning: variable 'ie01' set but not used [-Wunused-but-set-variable] EdgeIndex iePlus, ie, ie12 = NO_VERTEX, ie02, ie01; ^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr2.c:4764:53: warning: variable 'ie02' set but not used [-Wunused-but-set-variable] EdgeIndex iePlus, ie, ie12 = NO_VERTEX, ie02, ie01; ^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr2.c: In function 'PlusFromDB_N_DB_O_to_Metal': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr2.c:5066:21: warning: variable 'bForbiddenCarbonCharges' set but not used [-Wunused-but-set-variable] int i, j, k, n, bForbiddenCarbonCharges, delta, ret2, ret, num_NO, num_M; ^~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr2.c: In function 'RemoveRadFromMobileHEndpoint': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr2.c:5272:17: warning: variable 'tgroup_number' set but not used [-Wunused-but-set-variable] int tgroup_number, num_endpoints; ^~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr2.c: In function 'RemoveRadFromMobileHEndpointFixH': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr2.c:5638:18: warning: variable 'tgroup_number' set but not used [-Wunused-but-set-variable] int tgroup_number, num_endpoints; ^~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr2.c:5633:34: warning: variable 'num_endp' set but not used [-Wunused-but-set-variable] int itg, j, k, n, m, num_endp; ^~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr2.c: In function 'AdjustTgroupsToForbiddenEdges2': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr2.c:2413:23: warning: 'ev1' may be used uninitialized in this function [-Wmaybe-uninitialized] ev1->flow --; ~~~~~~~~~~^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr2.c:2680:20: warning: 'e' may be used uninitialized in this function [-Wmaybe-uninitialized] if ( !e->flow ) { ~^~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/isomorphism.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/isomorphism.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/isomorphism.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/isomorphism.cpp: In member function 'void OpenBabel::VF2Mapper::MapNext(OpenBabel::VF2Mapper::State&, OpenBabel::OBQueryAtom*, OpenBabel::OBAtom*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/isomorphism.cpp:310:38: warning: comparison of integer expressions of different signedness: 'time_t' {aka 'long int'} and 'unsigned int' [-Wsign-compare] if (time(NULL) - m_startTime > m_timeout) ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/isomorphism.cpp: In member function 'virtual void OpenBabel::VF2Mapper::MapGeneric(OpenBabel::OBIsomorphismMapper::Functor&, const OpenBabel::OBMol*, const OpenBabel::OBBitVec&)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/isomorphism.cpp:494:38: warning: comparison of integer expressions of different signedness: 'time_t' {aka 'long int'} and 'unsigned int' [-Wsign-compare] if (time(NULL) - m_startTime > m_timeout) ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/op.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/op.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/op.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/obiter.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/obiter.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/obiter.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/obutil.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/obutil.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/obutil.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 11%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr4.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/ichirvr4.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr4.c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr4.c: In function 'FixMoreHydrogenInFormula': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr4.c:383:23: warning: operation on 'neigh' may be undefined [-Wsequence-point] at2[neigh=at2[i].neighbor[0]].chem_bonds_valence > at2[neigh].valence ~~~~~^~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr4.c: In function 'MoveChargeToRemoveCenerpoints': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr4.c:1512:39: warning: variable 'DoubleBondAcceptors' set but not used [-Wunused-but-set-variable] S_CHAR MobileChargeNeigh[MAXVAL], DoubleBondAcceptors[MAXVAL], DoubleBondNotONeigh[MAXVAL]; ^~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr4.c:1504:22: warning: variable 'num_endpoints' set but not used [-Wunused-but-set-variable] int i, j, neigh, num_endpoints, num_success; ^~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr4.c: In function 'AddRemProtonsInRestrStruct': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr4.c:2932:25: warning: variable 'tot_num_at' set but not used [-Wunused-but-set-variable] int num_atoms, tot_num_at, num_deleted_H, num_tg, num_changed, num_deleted_components; ^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr4.c: In function 'AddRemIsoProtonsInRestrStruct': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr4.c:3134:45: warning: the address of 'num_prot' will always evaluate as 'true' [-Waddress] for ( iComp = 0; iComp < num_components && num_prot; iComp ++ ) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr4.c:3102:16: warning: variable 'bNormalizationFlags' set but not used [-Wunused-but-set-variable] INCHI_MODE bNormalizationFlags; ^~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr4.c:3101:16: warning: variable 'pINChI' set but not used [-Wunused-but-set-variable] INChI *pINChI; ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr4.c:3096:25: warning: variable 'tot_num_at' set but not used [-Wunused-but-set-variable] int num_atoms, tot_num_at, num_deleted_H, num_tg, num_changed; ^~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/obconversion.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/obconversion.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/obconversion.cpp In file included from /usr/src/RPM/BUILD/openbabel-2.4.1/src/zipstream.h:333, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/obconversion.cpp:53: /usr/src/RPM/BUILD/openbabel-2.4.1/src/zipstreamimpl.h: In instantiation of 'std::streampos zlib_stream::basic_unzip_streambuf::seekoff(std::streamoff, std::ios_base::seekdir, std::ios_base::openmode) [with charT = char; traits = std::char_traits; std::streampos = std::fpos<__mbstate_t>; std::streamoff = long long int; std::ios_base::seekdir = std::_Ios_Seekdir; std::ios_base::openmode = std::_Ios_Openmode]': /usr/src/RPM/BUILD/openbabel-2.4.1/src/zipstreamimpl.h:391:3: required from here /usr/src/RPM/BUILD/openbabel-2.4.1/src/zipstreamimpl.h:401:8: warning: variable 'ch' set but not used [-Wunused-but-set-variable] char ch; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/zipstreamimpl.h: In instantiation of 'std::streampos zlib_stream::basic_unzip_streambuf::seekpos(std::streampos, std::ios_base::openmode) [with charT = char; traits = std::char_traits; std::streampos = std::fpos<__mbstate_t>; std::ios_base::openmode = std::_Ios_Openmode]': /usr/src/RPM/BUILD/openbabel-2.4.1/src/zipstreamimpl.h:444:3: required from here /usr/src/RPM/BUILD/openbabel-2.4.1/src/zipstreamimpl.h:456:8: warning: variable 'ch' set but not used [-Wunused-but-set-variable] char ch; ^~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 12%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr5.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/ichirvr5.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr5.c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr5.c: In function 'FixMobileHRestoredStructure': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr5.c:286:13: warning: variable 'iat_SB_N_III' set but not used [-Wunused-but-set-variable] int iat_SB_N_III[MAX_DIFF_MOBH], iat_DB_N_III[MAX_DIFF_MOBH]; ^~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr5.c:429:36: warning: variable 'pvEndp2' set but not used [-Wunused-but-set-variable] BNS_VERTEX *pTg, *pvEndp, *pvEndp2, *pvCent; ^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr5.c:741:27: warning: variable 'pvEndp' set but not used [-Wunused-but-set-variable] BNS_VERTEX *pTg, *pvEndp; ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr5.c:486:32: warning: 'peCent2' may be used uninitialized in this function [-Wmaybe-uninitialized] peCent2->flow --; ~~~~~~~^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr5.c:490:80: warning: 'peTg2' may be used uninitialized in this function [-Wmaybe-uninitialized] if ( 1 == peTg->cap - peTg->flow && 0 == peTg2->cap - peTg2->flow && ~~~~~^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr5.c:496:67: warning: 'vEndp2' may be used uninitialized in this function [-Wmaybe-uninitialized] pTCGroups->pTCG[itg].tg_set_Minus = vEndp2+1; ~~~~~~^~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 12%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr6.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/ichirvr6.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr6.c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr6.c: In function 'FixRestoredStructureStereo': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr6.c:361:35: warning: variable 'cmpInChI2_Prev' set but not used [-Wunused-but-set-variable] INCHI_MODE cmpInChI_Prev, cmpInChI2_Prev; ^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr6.c:361:20: warning: variable 'cmpInChI_Prev' set but not used [-Wunused-but-set-variable] INCHI_MODE cmpInChI_Prev, cmpInChI2_Prev; ^~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr6.c:1140:17: warning: variable 'aC' set but not used [-Wunused-but-set-variable] int aN, aC, i1, i2, ePlus; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr6.c:1013:41: warning: 'pe' may be used uninitialized in this function [-Wmaybe-uninitialized] pe->flow -= delta; /* make single bond */ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr6.c:1020:25: warning: 'e' may be used uninitialized in this function [-Wmaybe-uninitialized] if ( (ret = AddToEdgeList( &AllChargeEdges, e, INC_ADD_EDGE )) ) { ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/plugin.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/plugin.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/plugin.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 11%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr3.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/ichirvr3.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr3.c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr3.c: In function 'FillTgDiffHChgFH': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr3.c:133:25: warning: variable 'itg_prev' set but not used [-Wunused-but-set-variable] int i, j, iat, itg, itg_prev, num, itg_out, bOverflow; ^~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr3.c: In function 'FixFixedHRestoredStructure': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr3.c:423:15: warning: variable 'iat_DB_O' set but not used [-Wunused-but-set-variable] short iat_DB_O[MAX_DIFF_FIXH], iat_SB_O_Minus[MAX_DIFF_FIXH]; ^~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr3.c:530:15: warning: variable 'iat_DB_O_Plus' set but not used [-Wunused-but-set-variable] short iat_DB_O_Plus[MAX_DIFF_FIXH], iat_SB_NH[MAX_DIFF_FIXH]; ^~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr3.c:662:46: warning: variable 'iat_DB_O' set but not used [-Wunused-but-set-variable] short iat_SB_N_Minus[MAX_DIFF_FIXH], iat_DB_O[MAX_DIFF_FIXH]; ^~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr3.c:791:46: warning: variable 'iat_DB_O' set but not used [-Wunused-but-set-variable] short iat_SB_N_Minus[MAX_DIFF_FIXH], iat_DB_O[MAX_DIFF_FIXH]; ^~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr3.c:907:44: warning: variable 'iat_DB_Charged' set but not used [-Wunused-but-set-variable] short iat_SB_Neutr[MAX_DIFF_FIXH], iat_DB_Charged[MAX_DIFF_FIXH]; ^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr3.c:1028:15: warning: variable 'iat_DB_O' set but not used [-Wunused-but-set-variable] short iat_DB_O[MAX_DIFF_FIXH], iat_SB_NH[MAX_DIFF_FIXH]; ^~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr3.c:1416:15: warning: variable 'iat_DB_NHn_Plus' set but not used [-Wunused-but-set-variable] short iat_DB_NHn_Plus[MAX_DIFF_FIXH], iat_SB_NHm_Neutr[MAX_DIFF_FIXH]; ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr3.c:1969:46: warning: variable 'iat_DB_O_Neutr' set but not used [-Wunused-but-set-variable] short iat_SB_O_Minus[MAX_DIFF_FIXH], iat_DB_O_Neutr[MAX_DIFF_FIXH]; ^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr3.c:2090:46: warning: variable 'iat_DB_O_Neutr' set but not used [-Wunused-but-set-variable] short iat_SB_O_Minus[MAX_DIFF_FIXH], iat_DB_O_Neutr[MAX_DIFF_FIXH]; ^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr3.c:2212:15: warning: variable 'iat_DB_N_Neutr' set but not used [-Wunused-but-set-variable] short iat_DB_N_Neutr[MAX_DIFF_FIXH], iat_SB_O_Minus[MAX_DIFF_FIXH]; ^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr3.c:2351:47: warning: variable 'icNH2' set but not used [-Wunused-but-set-variable] int iNH2, iatC, iatNH2, icNH2; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr3.c:2488:47: warning: variable 'icNH2' set but not used [-Wunused-but-set-variable] int iNH2, iatC, iatNH2, icNH2, j1, j2; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr3.c:2619:15: warning: variable 'iat_SB_Neutr' set but not used [-Wunused-but-set-variable] short iat_SB_Neutr[MAX_DIFF_FIXH], iat_DB_Charged[MAX_DIFF_FIXH]; ^~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr3.c:2808:19: warning: variable 'iat_SB_N_Neutr' set but not used [-Wunused-but-set-variable] short iat_SB_N_Neutr[MAX_DIFF_FIXH], iat_DB_O[MAX_DIFF_FIXH]; ^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr3.c:3006:23: warning: variable 'iat_SB_N_Neutr' set but not used [-Wunused-but-set-variable] short iat_SB_N_Neutr[MAX_DIFF_FIXH], iat_DB_O[MAX_DIFF_FIXH]; ^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr3.c:3424:15: warning: variable 'iat_SB_Neutr' set but not used [-Wunused-but-set-variable] short iat_SB_Neutr[MAX_DIFF_FIXH], iat_DB_Charged[MAX_DIFF_FIXH]; ^~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr3.c:3570:46: warning: variable 'iat_DB_O_Neutr' set but not used [-Wunused-but-set-variable] short iat_SB_N_Minus[MAX_DIFF_FIXH], iat_DB_O_Neutr[MAX_DIFF_FIXH]; ^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr3.c:3709:15: warning: variable 'iat_SB_Neutr' set but not used [-Wunused-but-set-variable] short iat_SB_Neutr[MAX_DIFF_FIXH], iat_DB_Charged[MAX_DIFF_FIXH]; ^~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr3.c:4114:46: warning: variable 'iat_DB_N' set but not used [-Wunused-but-set-variable] short iat_SB_O_Minus[MAX_DIFF_FIXH], iat_DB_N[MAX_DIFF_FIXH]; ^~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr3.c:4263:74: warning: variable 'iat_DB_O' set but not used [-Wunused-but-set-variable] short iat_SB_O_Minus[MAX_DIFF_FIXH], iat_Central[MAX_DIFF_FIXH], iat_DB_O[MAX_DIFF_FIXH]; ^~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/patty.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/patty.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/patty.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 13%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichisort.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/ichisort.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichisort.c make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 12%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr7.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/ichirvr7.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr7.c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr7.c: In function 'CompareAllOrigInchiToRevInChI': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichirvr7.c:1046:33: warning: variable 'iMobileHpStruct' set but not used [-Wunused-but-set-variable] int i, iInchiRec, iMobileH, iMobileHpStruct, num_components, iComponent, ret=0; ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/phmodel.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/phmodel.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/phmodel.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/rand.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/rand.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/rand.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/parsmart.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/parsmart.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/parsmart.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/parsmart.cpp: In function 'int OpenBabel::CreateAtom(OpenBabel::Pattern*, OpenBabel::AtomExpr*, int, int)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/parsmart.cpp:450:15: warning: variable 'size' set but not used [-Wunused-but-set-variable] int index,size; ^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/parsmart.cpp: In function 'int OpenBabel::CreateBond(OpenBabel::Pattern*, OpenBabel::BondExpr*, int, int)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/parsmart.cpp:482:15: warning: variable 'size' set but not used [-Wunused-but-set-variable] int index,size; ^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/parsmart.cpp: In member function 'OpenBabel::Pattern* OpenBabel::OBSmartsPattern::SMARTSParser(OpenBabel::Pattern*, OpenBabel::ParseState*, int, int)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/parsmart.cpp:1489:45: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] for (int nbr_idx=0; nbr_idx < pat->atom[stat->closure[index]].nbrs.size(); ++nbr_idx) { ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/parsmart.cpp: At global scope: /usr/src/RPM/BUILD/openbabel-2.4.1/src/parsmart.cpp:151:14: warning: 'int OpenBabel::GetVectorBinding()' declared 'static' but never defined [-Wunused-function] static int GetVectorBinding(); ^~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/parsmart.cpp:1716:20: warning: 'OpenBabel::AtomExpr* OpenBabel::NotAtomExpr(OpenBabel::AtomExpr*)' defined but not used [-Wunused-function] static AtomExpr *NotAtomExpr( AtomExpr *expr ) ^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/parsmart.cpp:293:14: warning: 'int OpenBabel::IsInvalidAtom(OpenBabel::AtomExpr*)' defined but not used [-Wunused-function] static int IsInvalidAtom( AtomExpr *expr ) ^~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/query.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/query.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/query.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 13%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichister.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/ichister.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichister.c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichister.c: In function 'are_3_vect_in_one_plane': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichister.c:987:12: warning: variable 'prod' set but not used [-Wunused-but-set-variable] double prod; ^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichister.c: In function 'are_4at_in_one_plane': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichister.c:996:25: warning: variable 'prod' set but not used [-Wunused-but-set-variable] double coord[3][3], prod; ^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichister.c: In function 'FixSb0DParities': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichister.c:1568:27: warning: variable 'at_i2' set but not used [-Wunused-but-set-variable] int at_i1, at_i2, j; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichister.c:1568:20: warning: variable 'at_i1' set but not used [-Wunused-but-set-variable] int at_i1, at_i2, j; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichister.c: In function 'set_stereo_bonds_parity': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichister.c:2383:15: warning: variable 'next_at_1' set but not used [-Wunused-but-set-variable] int j, k, next_at_1, i_next_at_1, i_next_at_2, at_2, next_at_2, num_stereo_bonds, bFound, bAllene; ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichister.c: In function 'set_stereo_atom_parity': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichister.c:469:34: warning: 'first_Up' may be used uninitialized in this function [-Wmaybe-uninitialized] next2 = (first_Up+nNumNeigh - i - 1 ) % nNumNeigh; /* the 2nd before Up sequence */ ~~~~~~~~^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichister.c:340:69: note: 'first_Up' was declared here int i, num_Up, num_Dn, bPrev_Up, cur_len_Up, cur_first_Up, len_Up, first_Up; ^~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichister.c:1006:17: warning: 'min_actual_min_sine' may be used uninitialized in this function [-Wmaybe-uninitialized] if ( !k || actual_min_sine < min_actual_min_sine ) { ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichister.c:995:29: note: 'min_actual_min_sine' was declared here double actual_min_sine, min_actual_min_sine; ^~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 14%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ikey_base26.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/ikey_base26.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ikey_base26.c make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 13%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichitaut.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/ichitaut.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichitaut.c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichitaut.c: In function 'GetOtherSaltType': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichitaut.c:1970:33: warning: variable 'bond_type' set but not used [-Wunused-but-set-variable] int type, endpoint_valence, bond_type, centerpoint; ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichitaut.c: In function 'MarkTautomerGroups': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichitaut.c:3588:30: warning: the address of 'DfsPath' will always evaluate as 'true' [-Waddress] if ( !nDfsPathPos || !DfsPath ) { ^ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichitaut.c:3237:18: warning: variable 'max_num_t' set but not used [-Wunused-but-set-variable] int *pnum_t, max_num_t, bIgnoreIsotopic; ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichitaut.c:3237:10: warning: variable 'pnum_t' set but not used [-Wunused-but-set-variable] int *pnum_t, max_num_t, bIgnoreIsotopic; ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ichitaut.c:3234:10: warning: variable 'bTautBond' set but not used [-Wunused-but-set-variable] int bTautBond, bNonTautBond, bAltBond; ^~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 14%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ikey_dll.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/ikey_dll.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ikey_dll.c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ikey_dll.c: In function 'GetINCHIKeyFromINCHI': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ikey_dll.c:265:9: warning: "/*" within comment [-Wcomment] /* source string ( was sproto[ncp]='\0'; should be sproto[lenproto]='\0'; ) */ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/ikey_dll.c:141:8: warning: unused variable 'bytelen' [-Wunused-variable] size_t bytelen = 32; ^~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 15%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/inchi_dll_a.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/inchi_dll_a.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/inchi_dll_a.c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/inchi_dll_a.c: In function 'STDINCHIGEN_Setup': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/inchi_dll_a.c:171:5: warning: unused variable 'force_std' [-Wunused-variable] int force_std=0; ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/inchi_dll_a.c: In function 'INCHIGEN_DoNormalization': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/inchi_dll_a.c:612:22: warning: variable 'ret2a' set but not used [-Wunused-but-set-variable] int ret1a=0, ret2a=0; /* for derivatives and ring-chain */ ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/inchi_dll_a.c:612:13: warning: variable 'ret1a' set but not used [-Wunused-but-set-variable] int ret1a=0, ret2a=0; /* for derivatives and ring-chain */ ^~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 15%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/inchi_dll.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/inchi_dll.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/inchi_dll.c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/inchi_dll.c: In function 'GetStructFromINCHI': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/inchi_dll.c:2100:9: warning: variable 'bStdFormat' set but not used [-Wunused-but-set-variable] int bStdFormat = 0; ^~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 15%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/inchi_dll_main.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/inchi_dll_main.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/inchi_dll_main.c make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/pointgroup.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/pointgroup.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/pointgroup.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/pointgroup.cpp: In member function 'int OpenBabel::PointGroupPrivate::establish_pairs(OpenBabel::PointGroupPrivate::SYMMETRY_ELEMENT*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/pointgroup.cpp:265:32: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] if( elem->transform[i] >= _mol->NumAtoms() ){ /* No symmetric atom yet */ ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/pointgroup.cpp: In member function 'int OpenBabel::PointGroupPrivate::check_transform_order(OpenBabel::PointGroupPrivate::SYMMETRY_ELEMENT*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/pointgroup.cpp:309:32: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] if( elem->transform[i] == i ) /* Identity transform is Ok for any order */ ~~~~~~~~~~~~~~~~~~~^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/pointgroup.cpp:313:34: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] if( elem->transform[j] == i ) ~~~~~~~~~~~~~~~~~~~^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/pointgroup.cpp: In member function 'int OpenBabel::PointGroupPrivate::same_transform(OpenBabel::PointGroupPrivate::SYMMETRY_ELEMENT*, OpenBabel::PointGroupPrivate::SYMMETRY_ELEMENT*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/pointgroup.cpp:356:31: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] if( b->transform[j] != i ) ~~~~~~~~~~~~~~~~^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/pointgroup.cpp: In member function 'OpenBabel::OBPointGroup::Symbol OpenBabel::OBPointGroup::IdentifyPointGroupSymbol(double)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/pointgroup.cpp:1956:37: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] || d->NormalAxesCounts[2] >= maxAxis) { // Are there the perpendicular C2 axes? ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/pointgroup.cpp:1959:28: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] if (d->PlanesCount >= maxAxis + 1) { // Likely Dnh ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/pointgroup.cpp:1984:33: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] else if (d->PlanesCount == maxAxis) { // Likely Dnd ~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/pointgroup.cpp:2086:29: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] else if (d->PlanesCount >= maxAxis) { // Cnv ~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/pointgroup.cpp: In member function 'void OpenBabel::OBPointGroup::Symmetrize(OpenBabel::OBMol*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/pointgroup.cpp:2173:32: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] for (unsigned int i = 0; i < d->PlanesCount; i++) ~~^~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/pointgroup.cpp:2180:32: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] for (unsigned int i = 0; i < d->NormalAxesCount; i++) ~~^~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/pointgroup.cpp:2187:32: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] for (unsigned int i = 0; i < d->ImproperAxesCount; i++) ~~^~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/residue.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/residue.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/residue.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 15%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/inchi_dll_a2.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/inchi_dll_a2.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/inchi_dll_a2.c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/inchi_dll_a2.c: In function 'NormOneStructureINChI': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/inchi_dll_a2.c:399:18: warning: unused variable 'res' [-Wunused-variable] int res = CreateCompositeNormAtom( composite_norm_data, ^~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/inchi_dll_a2.c: In function 'CanonOneStructureINChI': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/inchi_dll_a2.c:448:15: warning: unused variable 'pINChI_Aux2' [-Wunused-variable] PINChI_Aux2 **pINChI_Aux2 = genctl->pINChI_Aux; ^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/inchi_dll_a2.c:447:11: warning: unused variable 'pINChI2' [-Wunused-variable] PINChI2 **pINChI2 = genctl->pINChI; ^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/inchi_dll_a2.c: In function 'Normalization_step': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/inchi_dll_a2.c:1369:53: warning: suggest parentheses around '&&' within '||' [-Wparentheses] (0 < NUM_H_ISOTOPES && t_group_info->tni.nNumRemovedProtonsIsotopic[0] || ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/inchi_dll_a2.c: In function 'CreateCompositeNormAtom': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/inchi_dll_a2.c:1803:74: warning: variable 'nNumRemovedProtons' set but not used [-Wunused-but-set-variable] int i, j, jj, k, n, m, tot_num_at, tot_num_H, cur_num_at, cur_num_H, nNumRemovedProtons; ^~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 15%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/runichi.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/runichi.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/runichi.c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/runichi.c: In function 'SortAndPrintINChI': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/runichi.c:769:9: warning: unused variable 'ikflag' [-Wunused-variable] int ikflag = 0; ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/runichi.c:764:33: warning: variable 'iINChI' set but not used [-Wunused-but-set-variable] int j, i, k, k1, ret, iINChI, max_num_components; ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/runichi.c: In function 'ProcessOneStructure': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/runichi.c:2815:26: warning: variable 'ret2a' set but not used [-Wunused-but-set-variable] int ret1a=0, ret2a=0; /* for derivatives and ring-chain */ ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/runichi.c:2815:17: warning: variable 'ret1a' set but not used [-Wunused-but-set-variable] int ret1a=0, ret2a=0; /* for derivatives and ring-chain */ ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/runichi.c:2758:36: warning: variable 'maxINChI' set but not used [-Wunused-but-set-variable] int nRet = 0, nRet1, i, k, maxINChI=0; ^~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/mol.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/mol.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/mol.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/mol.cpp: In member function 'unsigned int OpenBabel::OBMol::NumHvyAtoms()': /usr/src/RPM/BUILD/openbabel-2.4.1/src/mol.cpp:783:30: warning: unnecessary parentheses in declaration of 'i' [-Wparentheses] vector::iterator(i); ^ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mol.cpp: In member function 'OpenBabel::OBAtom* OpenBabel::OBMol::NewAtom(long unsigned int)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/mol.cpp:1654:32: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] if (vb->GetBgn() > _natoms || vb->GetEnd() > _natoms) ~~~~~~~~~~~~~^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mol.cpp:1654:58: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] if (vb->GetBgn() > _natoms || vb->GetEnd() > _natoms) ~~~~~~~~~~~~~^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mol.cpp: In member function 'bool OpenBabel::OBMol::AddAtom(OpenBabel::OBAtom&, bool)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/mol.cpp:1783:32: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] if (vb->GetBgn() > _natoms || vb->GetEnd() > _natoms) ~~~~~~~~~~~~~^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mol.cpp:1783:58: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] if (vb->GetBgn() > _natoms || vb->GetEnd() > _natoms) ~~~~~~~~~~~~~^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mol.cpp: In member function 'bool OpenBabel::OBMol::StripSalts(int)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/mol.cpp:1853:23: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] if (i->size() < threshold || (threshold == 0 && i != max)) ~~~~~~~~~~^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mol.cpp: In member function 'void OpenBabel::OBMol::SetConformer(int)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/mol.cpp:4178:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] if (i >= 0 && i < _vconf.size()) ~~^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mol.cpp: In member function 'bool OpenBabel::OBMol::MakeDativeBonds()': /usr/src/RPM/BUILD/openbabel-2.4.1/src/mol.cpp:4276:35: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] bool higherorder = bo > bestbond->GetBondOrder(); ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mol.cpp: In member function 'bool OpenBabel::OBMol::ConvertZeroBonds()': /usr/src/RPM/BUILD/openbabel-2.4.1/src/mol.cpp:4342:29: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] for (int n = 0; n < bonds.size(); n++) { ~~^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mol.cpp:4364:29: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] for (int n = 1; n < scores.size(); n++) { ~~^~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 15%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/sha2.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/sha2.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/sha2.c make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/rotamer.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/rotamer.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/rotamer.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/rotamer.cpp: In member function 'void OpenBabel::OBRotamerList::AddRotamer(std::vector)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/rotamer.cpp:405:11: warning: this 'while' clause does not guard... [-Wmisleading-indentation] while (angle < 0.0) ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/rotamer.cpp:407:10: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while' while (angle > 360.0) ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/rotamer.cpp: In member function 'bool OpenBabel::OBRotamerList::SetCurrentCoordinates(OpenBabel::OBMol&, std::vector)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/rotamer.cpp:538:11: warning: this 'while' clause does not guard... [-Wmisleading-indentation] while (angle < 0.0) ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/rotamer.cpp:540:10: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while' while (angle > 360.0) ^~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 17%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/util.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/util.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/util.c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/util.c: In function 'get_num_H': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/util.c:532:46: warning: variable 'el_number_O' set but not used [-Wunused-but-set-variable] static int el_number_N = 0, el_number_S, el_number_O, el_number_C; ^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/util.c: In function 'nBondsValToMetal': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/util.c:782:12: warning: variable 'neigh' set but not used [-Wunused-but-set-variable] int i, neigh, bond_type, nVal2Metal = 0; ^~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/ring.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/ring.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/ring.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/tokenst.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/tokenst.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/tokenst.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 16%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/strutil.c.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_USRDLL -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -O2 -g -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/inchi.dir/strutil.c.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c: In function 'fix_odd_things': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:138:20: warning: variable 'el_number_O' set but not used [-Wunused-but-set-variable] static int el_number_O; ^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:135:20: warning: variable 'el_number_P' set but not used [-Wunused-but-set-variable] static int el_number_P; ^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c: In function 'nFindOneOM': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:792:18: warning: variable 'n_OM_best' set but not used [-Wunused-but-set-variable] int i, n_OM, n_OM_best, best_value, cur_value, diff; ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c: In function 'RemoveInpAtBond': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:1774:27: warning: variable 'k2' set but not used [-Wunused-but-set-variable] int i, j, m, m2, k2; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c: In function 'bHeteroAtomMayHaveXchgIsoH': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3104:76: warning: variable 'cur_num_iso_H' set but not used [-Wunused-but-set-variable] int j, val, is_O=0, is_Cl=0, is_N=0, is_H=0, num_H, iat_numb, bAccept, cur_num_iso_H; ^~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3104:34: warning: variable 'is_N' set but not used [-Wunused-but-set-variable] int j, val, is_O=0, is_Cl=0, is_N=0, is_H=0, num_H, iat_numb, bAccept, cur_num_iso_H; ^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3104:25: warning: variable 'is_Cl' set but not used [-Wunused-but-set-variable] int j, val, is_O=0, is_Cl=0, is_N=0, is_H=0, num_H, iat_numb, bAccept, cur_num_iso_H; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3104:17: warning: variable 'is_O' set but not used [-Wunused-but-set-variable] int j, val, is_O=0, is_Cl=0, is_N=0, is_H=0, num_H, iat_numb, bAccept, cur_num_iso_H; ^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c: In function 'bNumHeterAtomHasIsotopicH': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3181:37: warning: variable 'is_N' set but not used [-Wunused-but-set-variable] int i, j, val, is_O=0, is_Cl=0, is_N=0, is_H=0, num_H, iat_numb, bAccept, num_iso_H, cur_num_iso_H, num_iso_atoms; ^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3181:28: warning: variable 'is_Cl' set but not used [-Wunused-but-set-variable] int i, j, val, is_O=0, is_Cl=0, is_N=0, is_H=0, num_H, iat_numb, bAccept, num_iso_H, cur_num_iso_H, num_iso_atoms; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3181:20: warning: variable 'is_O' set but not used [-Wunused-but-set-variable] int i, j, val, is_O=0, is_Cl=0, is_N=0, is_H=0, num_H, iat_numb, bAccept, num_iso_H, cur_num_iso_H, num_iso_atoms; ^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c: In function 'WriteOrigAtomDataToSDfile': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3814:82: warning: suggest parentheses around '&&' within '||' [-Wparentheses] #define IS_DEUTERIUM(i) (!strcmp( at[i].elname, "D" ) || at[i].iso_atw_diff == 2 && !strcmp( at[i].elname, "H" )) ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3821:55: note: in expansion of macro 'IS_DEUTERIUM' #define ANY_ISO(i, X) ((X)? (at[i].iso_atw_diff && !IS_DEUTERIUM(i) && !IS_TRITIUM(i)) :\ ^~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:4281:38: note: in expansion of macro 'ANY_ISO' nNumIsoLines += ANY_ISO(i, bAtomsDT); ^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3815:82: warning: suggest parentheses around '&&' within '||' [-Wparentheses] #define IS_TRITIUM(i) (!strcmp( at[i].elname, "T" ) || at[i].iso_atw_diff == 3 && !strcmp( at[i].elname, "H" )) ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3821:75: note: in expansion of macro 'IS_TRITIUM' #define ANY_ISO(i, X) ((X)? (at[i].iso_atw_diff && !IS_DEUTERIUM(i) && !IS_TRITIUM(i)) :\ ^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:4281:38: note: in expansion of macro 'ANY_ISO' nNumIsoLines += ANY_ISO(i, bAtomsDT); ^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3814:82: warning: suggest parentheses around '&&' within '||' [-Wparentheses] #define IS_DEUTERIUM(i) (!strcmp( at[i].elname, "D" ) || at[i].iso_atw_diff == 2 && !strcmp( at[i].elname, "H" )) ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3822:55: note: in expansion of macro 'IS_DEUTERIUM' (at[i].iso_atw_diff || IS_DEUTERIUM(i) || IS_TRITIUM(i))) ^~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:4281:38: note: in expansion of macro 'ANY_ISO' nNumIsoLines += ANY_ISO(i, bAtomsDT); ^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3815:82: warning: suggest parentheses around '&&' within '||' [-Wparentheses] #define IS_TRITIUM(i) (!strcmp( at[i].elname, "T" ) || at[i].iso_atw_diff == 3 && !strcmp( at[i].elname, "H" )) ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3822:75: note: in expansion of macro 'IS_TRITIUM' (at[i].iso_atw_diff || IS_DEUTERIUM(i) || IS_TRITIUM(i))) ^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:4281:38: note: in expansion of macro 'ANY_ISO' nNumIsoLines += ANY_ISO(i, bAtomsDT); ^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3814:82: warning: suggest parentheses around '&&' within '||' [-Wparentheses] #define IS_DEUTERIUM(i) (!strcmp( at[i].elname, "D" ) || at[i].iso_atw_diff == 2 && !strcmp( at[i].elname, "H" )) ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:4317:26: note: in expansion of macro 'IS_DEUTERIUM' int nIsotopeH = IS_DEUTERIUM(i)? 1 : IS_TRITIUM(i)? 2 : 0; ^~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3815:82: warning: suggest parentheses around '&&' within '||' [-Wparentheses] #define IS_TRITIUM(i) (!strcmp( at[i].elname, "T" ) || at[i].iso_atw_diff == 3 && !strcmp( at[i].elname, "H" )) ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:4317:47: note: in expansion of macro 'IS_TRITIUM' int nIsotopeH = IS_DEUTERIUM(i)? 1 : IS_TRITIUM(i)? 2 : 0; ^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3814:82: warning: suggest parentheses around '&&' within '||' [-Wparentheses] #define IS_DEUTERIUM(i) (!strcmp( at[i].elname, "D" ) || at[i].iso_atw_diff == 2 && !strcmp( at[i].elname, "H" )) ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3821:55: note: in expansion of macro 'IS_DEUTERIUM' #define ANY_ISO(i, X) ((X)? (at[i].iso_atw_diff && !IS_DEUTERIUM(i) && !IS_TRITIUM(i)) :\ ^~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3826:29: note: in expansion of macro 'ANY_ISO' #define NORMAL_ISO(i, X) (ANY_ISO(i, X) && !ABNORMAL_ISO(i)) ^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:4354:14: note: in expansion of macro 'NORMAL_ISO' if ( NORMAL_ISO(i, bAtomsDT) ) { ^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3815:82: warning: suggest parentheses around '&&' within '||' [-Wparentheses] #define IS_TRITIUM(i) (!strcmp( at[i].elname, "T" ) || at[i].iso_atw_diff == 3 && !strcmp( at[i].elname, "H" )) ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3821:75: note: in expansion of macro 'IS_TRITIUM' #define ANY_ISO(i, X) ((X)? (at[i].iso_atw_diff && !IS_DEUTERIUM(i) && !IS_TRITIUM(i)) :\ ^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3826:29: note: in expansion of macro 'ANY_ISO' #define NORMAL_ISO(i, X) (ANY_ISO(i, X) && !ABNORMAL_ISO(i)) ^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:4354:14: note: in expansion of macro 'NORMAL_ISO' if ( NORMAL_ISO(i, bAtomsDT) ) { ^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3814:82: warning: suggest parentheses around '&&' within '||' [-Wparentheses] #define IS_DEUTERIUM(i) (!strcmp( at[i].elname, "D" ) || at[i].iso_atw_diff == 2 && !strcmp( at[i].elname, "H" )) ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3822:55: note: in expansion of macro 'IS_DEUTERIUM' (at[i].iso_atw_diff || IS_DEUTERIUM(i) || IS_TRITIUM(i))) ^~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3826:29: note: in expansion of macro 'ANY_ISO' #define NORMAL_ISO(i, X) (ANY_ISO(i, X) && !ABNORMAL_ISO(i)) ^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:4354:14: note: in expansion of macro 'NORMAL_ISO' if ( NORMAL_ISO(i, bAtomsDT) ) { ^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3815:82: warning: suggest parentheses around '&&' within '||' [-Wparentheses] #define IS_TRITIUM(i) (!strcmp( at[i].elname, "T" ) || at[i].iso_atw_diff == 3 && !strcmp( at[i].elname, "H" )) ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3822:75: note: in expansion of macro 'IS_TRITIUM' (at[i].iso_atw_diff || IS_DEUTERIUM(i) || IS_TRITIUM(i))) ^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3826:29: note: in expansion of macro 'ANY_ISO' #define NORMAL_ISO(i, X) (ANY_ISO(i, X) && !ABNORMAL_ISO(i)) ^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:4354:14: note: in expansion of macro 'NORMAL_ISO' if ( NORMAL_ISO(i, bAtomsDT) ) { ^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3814:82: warning: suggest parentheses around '&&' within '||' [-Wparentheses] #define IS_DEUTERIUM(i) (!strcmp( at[i].elname, "D" ) || at[i].iso_atw_diff == 2 && !strcmp( at[i].elname, "H" )) ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3821:55: note: in expansion of macro 'IS_DEUTERIUM' #define ANY_ISO(i, X) ((X)? (at[i].iso_atw_diff && !IS_DEUTERIUM(i) && !IS_TRITIUM(i)) :\ ^~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:4521:22: note: in expansion of macro 'ANY_ISO' if ( ANY_ISO(i, bAtomsDT) && !ALIASED_AT(i) ) { ^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3815:82: warning: suggest parentheses around '&&' within '||' [-Wparentheses] #define IS_TRITIUM(i) (!strcmp( at[i].elname, "T" ) || at[i].iso_atw_diff == 3 && !strcmp( at[i].elname, "H" )) ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3821:75: note: in expansion of macro 'IS_TRITIUM' #define ANY_ISO(i, X) ((X)? (at[i].iso_atw_diff && !IS_DEUTERIUM(i) && !IS_TRITIUM(i)) :\ ^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:4521:22: note: in expansion of macro 'ANY_ISO' if ( ANY_ISO(i, bAtomsDT) && !ALIASED_AT(i) ) { ^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3814:82: warning: suggest parentheses around '&&' within '||' [-Wparentheses] #define IS_DEUTERIUM(i) (!strcmp( at[i].elname, "D" ) || at[i].iso_atw_diff == 2 && !strcmp( at[i].elname, "H" )) ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3822:55: note: in expansion of macro 'IS_DEUTERIUM' (at[i].iso_atw_diff || IS_DEUTERIUM(i) || IS_TRITIUM(i))) ^~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:4521:22: note: in expansion of macro 'ANY_ISO' if ( ANY_ISO(i, bAtomsDT) && !ALIASED_AT(i) ) { ^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3815:82: warning: suggest parentheses around '&&' within '||' [-Wparentheses] #define IS_TRITIUM(i) (!strcmp( at[i].elname, "T" ) || at[i].iso_atw_diff == 3 && !strcmp( at[i].elname, "H" )) ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3822:75: note: in expansion of macro 'IS_TRITIUM' (at[i].iso_atw_diff || IS_DEUTERIUM(i) || IS_TRITIUM(i))) ^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:4521:22: note: in expansion of macro 'ANY_ISO' if ( ANY_ISO(i, bAtomsDT) && !ALIASED_AT(i) ) { ^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3814:82: warning: suggest parentheses around '&&' within '||' [-Wparentheses] #define IS_DEUTERIUM(i) (!strcmp( at[i].elname, "D" ) || at[i].iso_atw_diff == 2 && !strcmp( at[i].elname, "H" )) ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:4522:26: note: in expansion of macro 'IS_DEUTERIUM' if ( IS_DEUTERIUM(i) ) { ^~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:3815:82: warning: suggest parentheses around '&&' within '||' [-Wparentheses] #define IS_TRITIUM(i) (!strcmp( at[i].elname, "T" ) || at[i].iso_atw_diff == 3 && !strcmp( at[i].elname, "H" )) ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:4526:26: note: in expansion of macro 'IS_TRITIUM' if ( IS_TRITIUM(i) ) { ^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:4212:9: warning: variable 'bNext' set but not used [-Wunused-but-set-variable] int bNext /*, s*/; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:4207:9: warning: variable 'flag_bad_charge' set but not used [-Wunused-but-set-variable] int flag_bad_charge=0, flag_bad_iso = 0; ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c: In function 'fix_odd_things': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:603:28: warning: 'c' may be used uninitialized in this function [-Wmaybe-uninitialized] if ( c == neigh && at[i2].bond_type[ineigh] == BOND_TYPE_SINGLE ) ^ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c: In function 'WriteOrigAtomDataToSDfile': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:4463:43: warning: '%3d' directive writing between 3 and 4 bytes into a region of size between 0 and 5 [-Wformat-overflow=] sprintf( entry, " %3d %3d", i+1, (int)at[i].charge ); ^~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:4463:37: note: directive argument in the range [-128, 127] sprintf( entry, " %3d %3d", i+1, (int)at[i].charge ); ^~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:40: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 9 and 15 bytes into a destination of size 10 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:4484:47: warning: '%3d' directive writing 3 bytes into a region of size between 0 and 5 [-Wformat-overflow=] sprintf( entry, " %3d %3d", i+1, radical ); ^~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:4484:41: note: directive argument in the range [1, 3] sprintf( entry, " %3d %3d", i+1, radical ); ^~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi/strutil.c:40: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 9 and 14 bytes into a destination of size 10 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 17%] Linking C shared library ../../../lib/libinchi.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cmake -E cmake_link_script CMakeFiles/inchi.dir/link.txt --verbose=1 /usr/bin/cc -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -O2 -g -DNDEBUG -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -Wl,-soname,libinchi.so.0 -o ../../../lib/libinchi.so.0.4.1 CMakeFiles/inchi.dir/ichi_bns.c.o CMakeFiles/inchi.dir/ichi_io.c.o CMakeFiles/inchi.dir/ichican2.c.o CMakeFiles/inchi.dir/ichicano.c.o CMakeFiles/inchi.dir/ichicans.c.o CMakeFiles/inchi.dir/ichiisot.c.o CMakeFiles/inchi.dir/ichilnct.c.o CMakeFiles/inchi.dir/ichimak2.c.o CMakeFiles/inchi.dir/ichimake.c.o CMakeFiles/inchi.dir/ichimap1.c.o CMakeFiles/inchi.dir/ichimap2.c.o CMakeFiles/inchi.dir/ichimap4.c.o CMakeFiles/inchi.dir/ichinorm.c.o CMakeFiles/inchi.dir/ichiparm.c.o CMakeFiles/inchi.dir/ichiprt1.c.o CMakeFiles/inchi.dir/ichiprt2.c.o CMakeFiles/inchi.dir/ichiprt3.c.o CMakeFiles/inchi.dir/ichiqueu.c.o CMakeFiles/inchi.dir/ichiread.c.o CMakeFiles/inchi.dir/ichiring.c.o CMakeFiles/inchi.dir/ichirvr1.c.o CMakeFiles/inchi.dir/ichirvr2.c.o CMakeFiles/inchi.dir/ichirvr3.c.o CMakeFiles/inchi.dir/ichirvr4.c.o CMakeFiles/inchi.dir/ichirvr5.c.o CMakeFiles/inchi.dir/ichirvr6.c.o CMakeFiles/inchi.dir/ichirvr7.c.o CMakeFiles/inchi.dir/ichisort.c.o CMakeFiles/inchi.dir/ichister.c.o CMakeFiles/inchi.dir/ichitaut.c.o CMakeFiles/inchi.dir/ikey_base26.c.o CMakeFiles/inchi.dir/ikey_dll.c.o CMakeFiles/inchi.dir/inchi_dll.c.o CMakeFiles/inchi.dir/inchi_dll_a.c.o CMakeFiles/inchi.dir/inchi_dll_a2.c.o CMakeFiles/inchi.dir/inchi_dll_main.c.o CMakeFiles/inchi.dir/runichi.c.o CMakeFiles/inchi.dir/sha2.c.o CMakeFiles/inchi.dir/strutil.c.o CMakeFiles/inchi.dir/util.c.o -lm -ldl -lz -lcairo -lc cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/libinchi && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libinchi.so.0.4.1 ../../../lib/libinchi.so.0 ../../../lib/libinchi.so make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 17%] Built target inchi make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/spectrophore.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/spectrophore.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/spectrophore.cpp In file included from /usr/src/RPM/BUILD/openbabel-2.4.1/src/spectrophore.cpp:25: /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/spectrophore.h: In constructor 'OpenBabel::OBSpectrophore::OBSpectrophore()': /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/spectrophore.h:566:31: warning: 'OpenBabel::OBSpectrophore::_numberOfProbes' will be initialized after [-Wreorder] unsigned int _numberOfProbes; ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/spectrophore.h:560:31: warning: 'double** OpenBabel::OBSpectrophore::_property' [-Wreorder] double** _property; ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/spectrophore.cpp:31:1: warning: when initialized here [-Wreorder] OBSpectrophore::OBSpectrophore(void) ^~~~~~~~~~~~~~ In file included from /usr/src/RPM/BUILD/openbabel-2.4.1/src/spectrophore.cpp:25: /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/spectrophore.h: In copy constructor 'OpenBabel::OBSpectrophore::OBSpectrophore(const OpenBabel::OBSpectrophore&)': /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/spectrophore.h:567:31: warning: 'OpenBabel::OBSpectrophore::_spectro' will be initialized after [-Wreorder] std::vector _spectro; ^~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/spectrophore.h:560:31: warning: 'double** OpenBabel::OBSpectrophore::_property' [-Wreorder] double** _property; ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/spectrophore.cpp:48:1: warning: when initialized here [-Wreorder] OBSpectrophore::OBSpectrophore(const OBSpectrophore& s) ^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/spectrophore.cpp: In member function 'void OpenBabel::OBSpectrophore::_luSolve(double**, std::vector&, double*, unsigned int)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/spectrophore.cpp:1905:21: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] for (k = 0; k < i; ++k) ~~^~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/tautomer.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/tautomer.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/tautomer.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/transform.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/transform.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/transform.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/transform.cpp: In member function 'virtual OpenBabel::OBBase* OpenBabel::OBMol::DoTransformations(const std::map, std::__cxx11::basic_string >*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/transform.cpp:201:52: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] if(itr2!=pOptions->end() && NumHvyAtoms()!=atoi(itr2->second.c_str())) ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/rotor.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/rotor.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/rotor.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/rotor.cpp: In member function 'void OpenBabel::OBRotorList::RemoveSymVals(OpenBabel::OBMol&)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/rotor.cpp:256:69: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] if (this_side->GetAtomicNum() == 6 && this_side->GetHyb() == hyb && this_side->GetValence() == (hyb + 1) ) { ~~~~~~~~~~~~~~~~~~~~^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/rotor.cpp:256:103: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] if (this_side->GetAtomicNum() == 6 && this_side->GetHyb() == hyb && this_side->GetValence() == (hyb + 1) ) { ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/dlhandler_unix.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/typer.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/typer.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/typer.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/math/matrix3x3.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/depict/svgpainter.cpp In file included from /usr/src/RPM/BUILD/openbabel-2.4.1/src/depict/svgpainter.cpp:18: /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/depict/svgpainter.h: In constructor 'OpenBabel::SVGPainter::SVGPainter(std::ostream&, std::set >*, bool, double, double)': /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/depict/svgpainter.h:77:11: warning: 'OpenBabel::SVGPainter::m_fontPointSize' will be initialized after [-Wreorder] int m_fontPointSize; ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/depict/svgpainter.h:75:12: warning: 'bool OpenBabel::SVGPainter::m_isFillcolor' [-Wreorder] bool m_isFillcolor; ^~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/depict/svgpainter.cpp:34:3: warning: when initialized here [-Wreorder] SVGPainter::SVGPainter(ostream& ofs, std::set* gradients, bool withViewBox, ^~~~~~~~~~ In file included from /usr/src/RPM/BUILD/openbabel-2.4.1/src/depict/svgpainter.cpp:18: /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/depict/svgpainter.h:75:12: warning: 'OpenBabel::SVGPainter::m_isFillcolor' will be initialized after [-Wreorder] bool m_isFillcolor; ^~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/depict/svgpainter.h:74:32: warning: 'std::set >* OpenBabel::SVGPainter::m_Gradients' [-Wreorder] std::set *m_Gradients; ^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/depict/svgpainter.cpp:34:3: warning: when initialized here [-Wreorder] SVGPainter::SVGPainter(ostream& ofs, std::set* gradients, bool withViewBox, ^~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/math/transform3d.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/math/transform3d.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/math/transform3d.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/obmolecformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/obmolecformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/obmolecformat.cpp: In static member function 'static bool OpenBabel::OBMoleculeFormat::DoOutputOptions(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/obmolecformat.cpp:208:18: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] for (; c < pmol->NumConformers()-1; ++c) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/obmolecformat.cpp: In static member function 'static bool OpenBabel::OBMoleculeFormat::OutputMolsFromReaction(OpenBabel::OBReaction*, OpenBabel::OBConversion*, OpenBabel::OBFormat*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/obmolecformat.cpp:444:14: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] for(i=0;iNumReactants();i++) ~^~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/obmolecformat.cpp:446:14: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] for(i=0;iNumProducts();i++) ~^~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/mcdlutil.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:421:5: warning: multi-line comment [-Wcomment] // / \ ^ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp: In member function 'bool OpenBabel::TSimpleMolecule::threeBondResolve(int, int, double&, double&, OpenBabel::neighbourlist*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:964:16: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] for (i=0; i&, int, int)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:1467:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] for (j=0; j::size_type' {aka 'unsigned int'} [-Wsign-compare] } while (k&, std::vector&, std::vector >&, std::vector&, std::vector&, std::vector&, std::vector&, std::vector&)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:2005:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] for (j=0; j0) atDef=atDef+1; ~^~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:2015:30: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] if (cN>=0) if (maxAtDef==atomCycle[cN].size()) { ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:2030:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] for (j=1; j::size_type' {aka 'unsigned int'} [-Wsign-compare] for (j=0;j&, std::vector, std::vector&, std::vector >&, std::vector&, std::vector&, std::vector&, std::vector&)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:2103:98: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] if (baseCycle>0) for (i=0; i, std::vector, int, int&, int, int, int, bool)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:2234:67: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] for (j=0; j::size_type' {aka 'unsigned int'} [-Wsign-compare] for (k=0; k::size_type' {aka 'unsigned int'} [-Wsign-compare] for (j=1; j::size_type' {aka 'unsigned int'} [-Wsign-compare] for (i=0; i::size_type' {aka 'unsigned int'} [-Wsign-compare] for (i=0; i, long unsigned int>::value_type' {aka 'long unsigned int'} [-Wsign-compare] if (bond->at[0]==dblbond->bstereo_refs[ref_atom1] || bond->at[1]==dblbond->bstereo_refs[ref_atom1]) /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:3099:75: warning: comparison of integer expressions of different signedness: 'short int' and '__gnu_cxx::__alloc_traits, long unsigned int>::value_type' {aka 'long unsigned int'} [-Wsign-compare] if (bond->at[0]==dblbond->bstereo_refs[ref_atom1] || bond->at[1]==dblbond->bstereo_refs[ref_atom1]) /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:3101:26: warning: comparison of integer expressions of different signedness: 'short int' and '__gnu_cxx::__alloc_traits, long unsigned int>::value_type' {aka 'long unsigned int'} [-Wsign-compare] if (bond->at[0]==dblbond->bstereo_refs[ref_atom2] || bond->at[1]==dblbond->bstereo_refs[ref_atom2]) /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:3101:75: warning: comparison of integer expressions of different signedness: 'short int' and '__gnu_cxx::__alloc_traits, long unsigned int>::value_type' {aka 'long unsigned int'} [-Wsign-compare] if (bond->at[0]==dblbond->bstereo_refs[ref_atom2] || bond->at[1]==dblbond->bstereo_refs[ref_atom2]) /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp: In function 'bool OpenBabel::compareAtoms(int, int, std::vector*>)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:3123:37: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector*>::size_type' {aka 'unsigned int'} [-Wsign-compare] if ((a1 < 0) || (a2 < 0) || (a1 >= aeqList.size()) || (a2 >= aeqList.size())) return result; ~~~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:3123:63: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector*>::size_type' {aka 'unsigned int'} [-Wsign-compare] if ((a1 < 0) || (a2 < 0) || (a1 >= aeqList.size()) || (a2 >= aeqList.size())) return result; ~~~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp: In member function 'void OpenBabel::TSimpleMolecule::makeEquivalentList(std::vector&, bool)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:3287:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] for (j=0; jsize(); j++) (*lL)[i]=0; ~^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:3295:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] for (i=0; i*>::size_type' {aka 'unsigned int'} [-Wsign-compare] for (int i=0; i&, std::vector)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:3321:13: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const value_type' {aka 'const int'} [-Wsign-compare] if (l <= maxValues[i]) { /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp: In member function 'int OpenBabel::TSimpleMolecule::correctOverlapped()': /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:3370:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] for (i=0; i::size_type' {aka 'unsigned int'} [-Wsign-compare] for (i=0; i::size_type' {aka 'unsigned int'} [-Wsign-compare] for (i=0; i*, int)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:3536:44: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] for (i=0; isize(); i++) if (i != index) { ~~^~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp: In member function 'void OpenBabel::TEditedMolecule::addAsTemplate(OpenBabel::TEditedMolecule&, int, int, int, int, bool)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:4212:19: warning: variable 'nBondsOld' set but not used [-Wunused-but-set-variable] int nAtomsOld,nBondsOld,naDef1,naDef,i; ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:4213:10: warning: variable 'test' set but not used [-Wunused-but-set-variable] bool test,test1,test2; ^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:4213:15: warning: variable 'test1' set but not used [-Wunused-but-set-variable] bool test,test1,test2; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:4213:21: warning: variable 'test2' set but not used [-Wunused-but-set-variable] bool test,test1,test2; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:4215:40: warning: variable 'xCenter' set but not used [-Wunused-but-set-variable] double r,scale,xOld,yOld,xNew,yNew,xCenter,yCenter; ^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:4215:48: warning: variable 'yCenter' set but not used [-Wunused-but-set-variable] double r,scale,xOld,yOld,xNew,yNew,xCenter,yCenter; ^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp: In member function 'OpenBabel::TEditedMolecule* OpenBabel::TEditedMolecule::extractFragment(int, std::vector*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:4406:35: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] if (list.size()>1) for (i=0; i<(list.size()-1); i++) for (j=i+1; jlist[j]) { ~^~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:4406:71: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] if (list.size()>1) for (i=0; i<(list.size()-1); i++) for (j=i+1; jlist[j]) { ~^~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:4411:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] for (i=0; i::size_type' {aka 'unsigned int'} [-Wsign-compare] for (i=0; i::size_type' {aka 'unsigned int'} [-Wsign-compare] for (j=0; j::size_type' {aka 'unsigned int'} [-Wsign-compare] for (i=0; i::size_type' {aka 'unsigned int'} [-Wsign-compare] for (i=0; i*, std::vector*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:4632:31: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] if (qEnumerator->size() != nAtoms()) qEnumerator->resize(nAtoms()); ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:4633:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] for (i=0; isize(); i++) (*qEnumerator)[i]=i; ~^~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:4662:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] for (j=0; jsize(); j++) { ~^~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp: In member function 'bool OpenBabel::TEditedMolecule::fragmentSearch(OpenBabel::TEditedMolecule*, std::vector*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:4849:32: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] if (molecule1->listarSize()>aSTested.size()) aSTested.resize(molecule1->listarSize()); ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:4850:32: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] if (molecule1->listarSize()>bSTested.size()) bSTested.resize(molecule1->listarSize()); ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:4851:32: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] if (molecule1->listarSize()>queryQHydr.size()) queryQHydr.resize(molecule1->listarSize()); ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:4852:32: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] if (molecule1->listarSize()>queryAQTested.size()) queryAQTested.resize(molecule1->listarSize()); ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:4853:32: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] if (molecule1->listarSize()>queryBQTested.size()) queryBQTested.resize(molecule1->listarSize()); ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:4854:32: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] if (molecule1->listarSize()>queryCurrentAssignment.size()) queryCurrentAssignment.resize(molecule1->listarSize()); ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:4855:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] if (this->listarSize()>queryAQTested.size()) queryAQTested.resize(this->listarSize()); ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:5032:10: warning: suggest explicit braces to avoid ambiguous 'else' [-Wdangling-else] if (test2) for (j=0; jnBonds(); j++) if (bSTested[j]>=0) (*bondLabel)[j]=1; else (*bondLabel)[j]=0; ^ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:4836:9: warning: variable 'cycleNumber' set but not used [-Wunused-but-set-variable] int cycleNumber; ^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp: In member function 'bool OpenBabel::TemplateRedraw::loadTemplates()': /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:5111:24: warning: catching polymorphic type 'class std::exception' by value [-Wcatch-value=] } catch (exception ex) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp: In member function 'bool OpenBabel::TemplateRedraw::internalBondsPresent(OpenBabel::TEditedMolecule*, OpenBabel::TSimpleMolecule*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:5201:16: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] for (i=0; inAtoms(); i++) aList[mQuery->queryAQTested[i]]=1; ~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:5202:16: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] for (i=0; inBonds(); i++) bList[mQuery->queryBQTested[i]]=1; ~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp: In member function 'void OpenBabel::TemplateRedraw::rotateBondVertically(OpenBabel::TSimpleMolecule*, std::vector, int, double, double, double&, double&, double&, double&, double&, double&, int&)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:5232:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] for (i=0; i::size_type' {aka 'unsigned int'} [-Wsign-compare] for (i=0; i*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:5311:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] for (i=0; isize(); i++) { ~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:5328:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] for (i=0; i::size_type' {aka 'unsigned int'} [-Wsign-compare] for (i=0; i::size_type' {aka 'unsigned int'} [-Wsign-compare] for (i=0; i*, OpenBabel::PartFragmentDefinition&, double)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:5399:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] for (i=0; isize(); i++) { ~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:5412:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] for (i=0; isize(); i++) { ~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:5428:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] for (i=0; isize(); i++) { ~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp: In member function 'int OpenBabel::TemplateRedraw::coordinatesPrepare(OpenBabel::TEditedMolecule&, int, int)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:5667:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] for (i=kk; ifragmentSearch(&sm,NULL)) { ~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:5715:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] for (i=0; i::size_type' {aka 'unsigned int'} [-Wsign-compare] for (i=0; i::size_type' {aka 'unsigned int'} [-Wsign-compare] for (j=0; j::size_type' {aka 'unsigned int'} [-Wsign-compare] for (i=0; i::size_type' {aka 'unsigned int'} [-Wsign-compare] for (i=0; i::size_type' {aka 'unsigned int'} [-Wsign-compare] for (j=0; j::size_type' {aka 'unsigned int'} [-Wsign-compare] for (frCount=0; frCount::size_type' {aka 'unsigned int'} [-Wsign-compare] for (frCount=0; frCount::size_type' {aka 'unsigned int'} [-Wsign-compare] for (i=0; i::size_type' {aka 'unsigned int'} [-Wsign-compare] for (frCount=0; frCount::size_type' {aka 'unsigned int'} [-Wsign-compare] for (i=0;i::size_type' {aka 'unsigned int'} [-Wsign-compare] for (i=0; i::size_type' {aka 'unsigned int'} [-Wsign-compare] for (i=0; i::size_type' {aka 'unsigned int'} [-Wsign-compare] for (i=0; i::size_type' {aka 'unsigned int'} [-Wsign-compare] for (i=0; i::size_type' {aka 'unsigned int'} [-Wsign-compare] for (i=0; i::size_type' {aka 'unsigned int'} [-Wsign-compare] if (result == string::npos) result=-1; ~~~~~~~^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:6359:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'unsigned int'} [-Wsign-compare] if (result >= instring.length()) result=-1; ~~~~~~~^~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp: In function 'std::__cxx11::string OpenBabel::getAtomMCDL(OpenBabel::OBMol*, int, std::vector, std::vector, std::vector, std::vector)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:6546:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] for (j=0; j::size_type' {aka 'unsigned int'} [-Wsign-compare] if (anumStereo.size() > 1) for (i=0; i<(anumStereo.size()-1); i++) if (anumStereo[i] >= 0) { ~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:6593:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] for (j=i+1; j= 0) && (anumStereo[j] >= 0)) if (eqList[anumStereo[i]] == eqList[anumStereo[j]]) n++; ~^~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:6599:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] for (j=i+1; j= 0) && (anumStereo[j] >= 0)) if (eqList[anumStereo[i]] == eqList[anumStereo[j]]) { ~^~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:6609:28: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] for (j=i+1; j= 0) && (anumStereo[j] >= 0)) if (eqList[anumStereo[i]] == eqList[anumStereo[j]]) anumStereo[j]=-1; ~^~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:6612:28: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] for (j=i+1; j= 0) && (anumStereo[j] >= 0)) if (eqList[anumStereo[i]] == eqList[anumStereo[j]]) anumStereo[j]=-2; ~^~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:6623:30: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] if (k == 1) for (i=0; i >::size_type' {aka 'unsigned int'} [-Wsign-compare] if (v.size() > 1) for (i=0; i<(v.size() - 1); i++) for (j=i+1; j >::size_type' {aka 'unsigned int'} [-Wsign-compare] if (v.size() > 1) for (i=0; i<(v.size() - 1); i++) for (j=i+1; j >::size_type' {aka 'unsigned int'} [-Wsign-compare] for (i=0; i < v.size(); i++) { ~~^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp: In function 'std::__cxx11::string OpenBabel::getBondMCDL(OpenBabel::OBMol*, int, int, std::vector, std::vector, int (*)[4], std::vector, std::vector)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:6843:43: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] if (anumStereo.size() > 1) for (i=0; i<(anumStereo.size()-1); i++) if (anumStereo[i] >= 0) { ~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:6845:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] for (j=i+1; j::size_type' {aka 'unsigned int'} [-Wsign-compare] for (j=i+1; j::size_type' {aka 'unsigned int'} [-Wsign-compare] for (j=i+1; j::size_type' {aka 'unsigned int'} [-Wsign-compare] for (j=i+1; j >::size_type' {aka 'unsigned int'} [-Wsign-compare] if (v.size() > 1) for (i=0; i<(v.size() - 1); i++) for (j=i+1; j >::size_type' {aka 'unsigned int'} [-Wsign-compare] if (v.size() > 1) for (i=0; i<(v.size() - 1); i++) for (j=i+1; j >::size_type' {aka 'unsigned int'} [-Wsign-compare] for (i=0; i < v.size(); i++) { ~~^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:6680:26: warning: variable 'n4' set but not used [-Wunused-but-set-variable] int i,j,n,m,n1,n2,n3,n4,an1,an2,an3,an4,k; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp: In function 'void OpenBabel::implementAtomStereo(std::vector&, std::vector&, std::vector&, std::vector, std::vector, int, int, std::__cxx11::string)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:6960:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'unsigned int'} [-Wsign-compare] if (n1 < (astereo.length()-1)) astereo=astereo.substr(n1+1); else astereo=""; ~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp: In function 'void OpenBabel::implementBondStereo(std::vector, std::vector, std::vector&, std::vector&, int, int, std::__cxx11::string)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:7024:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'unsigned int'} [-Wsign-compare] if (n1 < (bstereo.length()-1)) bstereo=bstereo.substr(n1+1); else bstereo=""; ~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:7067:34: warning: catching polymorphic type 'class std::exception' by value [-Wcatch-value=] } catch (exception ex) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:7081:34: warning: catching polymorphic type 'class std::exception' by value [-Wcatch-value=] } catch (exception ex) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp: In function 'int OpenBabel::groupRedraw(OpenBabel::OBMol*, int, int, bool)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:7159:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] for (i=0; i::size_type' {aka 'unsigned int'} [-Wsign-compare] for (int i=0; i&, int&)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:7209:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'unsigned int'} [-Wsign-compare] if (n='0') && (value.at(n)<='9')) { ~^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:7212:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'unsigned int'} [-Wsign-compare] while ((n2<(value.length()-1)) && (value.at(n2)>='0') && (value.at(n2)<='9')) n2++; ~~^~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:7233:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'unsigned int'} [-Wsign-compare] if (n='0') && (value.at(n)<='9')) { ~^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:7236:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'unsigned int'} [-Wsign-compare] while ((n2<(value.length()-1)) && (value.at(n2)>='0') && (value.at(n2)<='9')) n2++; ~~^~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp: In member function 'void OpenBabel::TEditedMolecule::addAsTemplate(OpenBabel::TEditedMolecule&, int, int, int, int, bool)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/mcdlutil.cpp:4329:16: warning: 'r1' may be used uninitialized in this function [-Wmaybe-uninitialized] xNew=r1*scale*xu1+this->getAtom(thisAN)->rx; ~~^~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/math/vector3.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/math/vector3.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/math/vector3.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/confsearch.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/confsearch.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/confsearch.cpp In file included from /usr/include/eigen2/Eigen/Core:103, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/math/align.h:26, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/confsearch.cpp:25: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/confsearch.cpp: In member function 'unsigned int OpenBabel::LFSR::GetNext()': /usr/src/RPM/BUILD/openbabel-2.4.1/src/confsearch.cpp:81:47: warning: suggest parentheses around '-' in operand of '&' [-Wparentheses] _lfsr = (_lfsr >> 1) ^ (unsigned int)(0 - (_lfsr & 1u) & _poly); ~~^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/confsearch.cpp: In constructor 'OpenBabel::OBDiversePoses::OBDiversePoses(const OpenBabel::OBMol&, double, bool)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/confsearch.cpp:115:20: warning: 'OpenBabel::OBDiversePoses::cutoff' will be initialized after [-Wreorder] const double cutoff; ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/confsearch.cpp:109:12: warning: 'bool OpenBabel::OBDiversePoses::_percise' [-Wreorder] bool _percise; ^~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/confsearch.cpp:120:3: warning: when initialized here [-Wreorder] OBDiversePoses::OBDiversePoses(const OBMol &ref, double RMSD, bool percise): ^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/confsearch.cpp: In member function 'bool OpenBabel::OBDiversePoses::AddPose(double*, double)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/confsearch.cpp:146:32: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] for (unsigned int a = 0; a < natoms; ++a) ~~^~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/confsearch.cpp: In member function 'bool OpenBabel::OBDiversePoses::AddPose(std::vector, double)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/confsearch.cpp:185:14: warning: unused variable 'min_rmsd' [-Wunused-variable] double min_rmsd = DBL_MAX; ^~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/confsearch.cpp:249:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] for (int k = *c; k < levels.size(); ++k) { ~~^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/confsearch.cpp: In member function 'std::vector OpenBabel::OBDiversePoses::GetHeavyAtomCoords(const std::vector&)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/confsearch.cpp:263:32: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] for (unsigned int a = 0; a < natoms; ++a) ~~^~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/confsearch.cpp: In member function 'int OpenBabel::OBForceField::DiverseConfGen(double, unsigned int, double, bool)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/confsearch.cpp:379:23: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] for (int i = 1; i < rl.Size() + 1; ++i, rotor = rl.NextRotor(ri)) { // foreach rotor ~~^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/confsearch.cpp:417:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] for (int i = 0 ; i < rotor_sizes.size(); ++i) { ~~^~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/confsearch.cpp:432:42: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] } while (combination != 1 && counter < nconfs); // The LFSR always terminates with a 1 ~~~~~~~~^~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/confsearch.cpp:355:9: warning: unused variable 'origLogLevel' [-Wunused-variable] int origLogLevel = _loglvl; ^~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/stereo.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/stereo/stereo.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/stereo/stereo.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/stereo/stereo.cpp: In static member function 'static void OpenBabel::OBStereo::Permutate(OpenBabel::OBStereo::Refs&, int, int)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/stereo/stereo.cpp:77:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] if (i < 0 || i >= refs.size()) ~~^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/stereo/stereo.cpp:79:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] if (j < 0 || j >= refs.size()) ~~^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/stereo/stereo.cpp: In static member function 'static OpenBabel::OBStereo::Refs OpenBabel::OBStereo::Permutated(const Refs&, int, int)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/stereo/stereo.cpp:88:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] if (i < 0 || i >= refs.size()) ~~^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/stereo/stereo.cpp:90:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] if (j < 0 || j >= refs.size()) ~~^~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/stereo/tetranonplanar.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/depict/depict.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/depict/depict.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/depict/depict.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/depict/depict.cpp: In function 'unsigned int OpenBabel::GetAtomSymClass(OpenBabel::OBAtom*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/depict/depict.cpp:280:11: warning: unused variable 'nclasses' [-Wunused-variable] int nclasses = end_pos - copy_sym.begin(); ^~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/depict/depict.cpp: In member function 'virtual void OpenBabel::OBDepictPrivate::DrawAtomLabel(const string&, int, const OpenBabel::vector3&)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/depict/depict.cpp:966:21: warning: variable 'metrics' set but not used [-Wunused-but-set-variable] OBFontMetrics metrics = painter->GetFontMetrics(str); ^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/depict/depict.cpp:971:21: warning: variable 'metrics' set but not used [-Wunused-but-set-variable] OBFontMetrics metrics = painter->GetFontMetrics(subscript); ^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/depict/depict.cpp: In member function 'bool OpenBabel::OBDepict::DrawMolecule(OpenBabel::OBMol*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/depict/depict.cpp:423:25: warning: 'max_z' may be used uninitialized in this function [-Wmaybe-uninitialized] d->zScale = max_z - min_z; ~~~~~~^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/depict/depict.cpp:423:25: warning: 'min_z' may be used uninitialized in this function [-Wmaybe-uninitialized] /usr/src/RPM/BUILD/openbabel-2.4.1/src/depict/depict.cpp:421:22: warning: 'max_y' may be used uninitialized in this function [-Wmaybe-uninitialized] height = max_y - min_y + 2*margin; ~~~~~~^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/depict/depict.cpp:421:22: warning: 'min_y' may be used uninitialized in this function [-Wmaybe-uninitialized] /usr/src/RPM/BUILD/openbabel-2.4.1/src/depict/depict.cpp:420:22: warning: 'max_x' may be used uninitialized in this function [-Wmaybe-uninitialized] width = max_x - min_x + 2*margin; ~~~~~~^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/depict/depict.cpp:420:22: warning: 'min_x' may be used uninitialized in this function [-Wmaybe-uninitialized] make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/stereo/tetraplanar.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/distgeom.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/distgeom.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/distgeom.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/distgeom.cpp:39: warning: ignoring #pragma warning [-Wunknown-pragmas] #pragma warning(disable : 4244) // warning C4244: '=' : conversion from 'double' to 'float', possible loss of data /usr/src/RPM/BUILD/openbabel-2.4.1/src/distgeom.cpp:40: warning: ignoring #pragma warning [-Wunknown-pragmas] #pragma warning(disable : 4305) // warning C4305: '*=' : truncation from 'double' to 'float' /usr/src/RPM/BUILD/openbabel-2.4.1/src/distgeom.cpp:526:3: warning: multi-line comment [-Wcomment] // \ ^ /usr/src/RPM/BUILD/openbabel-2.4.1/src/distgeom.cpp:883:9: warning: multi-line comment [-Wcomment] // / \ ^ In file included from /usr/include/eigen2/Eigen/Core:103, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/distgeom.h:32, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/distgeom.cpp:22: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/distgeom.cpp: In member function 'void OpenBabel::OBDistanceGeometry::Set14Bounds()': /usr/src/RPM/BUILD/openbabel-2.4.1/src/distgeom.cpp:481:31: warning: comparison of integer expressions of different signedness: 'unsigned int' and '__gnu_cxx::__alloc_traits, int>::value_type' {aka 'int'} [-Wsign-compare] if (nbr->GetIdx() == path[a] || nbr->GetIdx() == path[c]) /usr/src/RPM/BUILD/openbabel-2.4.1/src/distgeom.cpp:481:59: warning: comparison of integer expressions of different signedness: 'unsigned int' and '__gnu_cxx::__alloc_traits, int>::value_type' {aka 'int'} [-Wsign-compare] if (nbr->GetIdx() == path[a] || nbr->GetIdx() == path[c]) /usr/src/RPM/BUILD/openbabel-2.4.1/src/distgeom.cpp:488:31: warning: comparison of integer expressions of different signedness: 'unsigned int' and '__gnu_cxx::__alloc_traits, int>::value_type' {aka 'int'} [-Wsign-compare] if (nbr->GetIdx() == path[d] || nbr->GetIdx() == path[b]) /usr/src/RPM/BUILD/openbabel-2.4.1/src/distgeom.cpp:488:59: warning: comparison of integer expressions of different signedness: 'unsigned int' and '__gnu_cxx::__alloc_traits, int>::value_type' {aka 'int'} [-Wsign-compare] if (nbr->GetIdx() == path[d] || nbr->GetIdx() == path[b]) /usr/src/RPM/BUILD/openbabel-2.4.1/src/distgeom.cpp:502:31: warning: comparison of integer expressions of different signedness: 'unsigned int' and '__gnu_cxx::__alloc_traits, int>::value_type' {aka 'int'} [-Wsign-compare] if (nbr->GetIdx() == path[a] || nbr->GetIdx() == path[c]) /usr/src/RPM/BUILD/openbabel-2.4.1/src/distgeom.cpp:502:59: warning: comparison of integer expressions of different signedness: 'unsigned int' and '__gnu_cxx::__alloc_traits, int>::value_type' {aka 'int'} [-Wsign-compare] if (nbr->GetIdx() == path[a] || nbr->GetIdx() == path[c]) /usr/src/RPM/BUILD/openbabel-2.4.1/src/distgeom.cpp:508:31: warning: comparison of integer expressions of different signedness: 'unsigned int' and '__gnu_cxx::__alloc_traits, int>::value_type' {aka 'int'} [-Wsign-compare] if (nbr->GetIdx() == path[d] || nbr->GetIdx() == path[b]) /usr/src/RPM/BUILD/openbabel-2.4.1/src/distgeom.cpp:508:59: warning: comparison of integer expressions of different signedness: 'unsigned int' and '__gnu_cxx::__alloc_traits, int>::value_type' {aka 'int'} [-Wsign-compare] if (nbr->GetIdx() == path[d] || nbr->GetIdx() == path[b]) /usr/src/RPM/BUILD/openbabel-2.4.1/src/distgeom.cpp:388:18: warning: unused variable 'i' [-Wunused-variable] unsigned int i, j; ^ /usr/src/RPM/BUILD/openbabel-2.4.1/src/distgeom.cpp:388:21: warning: unused variable 'j' [-Wunused-variable] unsigned int i, j; ^ /usr/src/RPM/BUILD/openbabel-2.4.1/src/distgeom.cpp:428:19: warning: unused variable 'bond_id' [-Wunused-variable] OBStereo::Ref bond_id; ^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/distgeom.cpp: In member function 'OpenBabel::OBCisTransStereo* OpenBabel::OBDistanceGeometry::GetCisTransStereo(OpenBabel::OBBond*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/distgeom.cpp:586:19: warning: unused variable 'bond_id' [-Wunused-variable] OBStereo::Ref bond_id; ^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/distgeom.cpp: In member function 'void OpenBabel::OBDistanceGeometry::Set15Bounds()': /usr/src/RPM/BUILD/openbabel-2.4.1/src/distgeom.cpp:616:18: warning: unused variable 'i' [-Wunused-variable] unsigned int i, j; ^ /usr/src/RPM/BUILD/openbabel-2.4.1/src/distgeom.cpp:616:21: warning: unused variable 'j' [-Wunused-variable] unsigned int i, j; ^ /usr/src/RPM/BUILD/openbabel-2.4.1/src/distgeom.cpp: In member function 'void OpenBabel::OBDistanceGeometry::TriangleSmooth(int)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/distgeom.cpp:747:9: warning: unused variable 'loopCount' [-Wunused-variable] int loopCount = 0; ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/distgeom.cpp: In member function 'void OpenBabel::OBDistanceGeometry::AddConformer()': /usr/src/RPM/BUILD/openbabel-2.4.1/src/distgeom.cpp:1107:27: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] if (a->GetIdx() == origin || a->GetIdx() == second || a->GetIdx() == third) ~~~~~~~~~~~~^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/distgeom.cpp:1107:52: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] if (a->GetIdx() == origin || a->GetIdx() == second || a->GetIdx() == third) ~~~~~~~~~~~~^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/distgeom.cpp:1107:77: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] if (a->GetIdx() == origin || a->GetIdx() == second || a->GetIdx() == third) ~~~~~~~~~~~~^~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/distgeom.cpp:1041:18: warning: unused variable 'attempts' [-Wunused-variable] unsigned int attempts = 0; ^~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/math/spacegroup.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/math/spacegroup.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/math/spacegroup.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 18%] Building CXX object src/CMakeFiles/openbabel.dir/conformersearch.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/conformersearch.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/conformersearch.cpp In file included from /usr/include/eigen2/Eigen/Core:103, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/math/align.h:26, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/conformersearch.cpp:20: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/conformersearch.cpp: In member function 'virtual double OpenBabel::OBMinimizingRMSDConformerScore::Score(OpenBabel::OBMol&, unsigned int, const RotorKeys&, const std::vector&)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/conformersearch.cpp:239:12: warning: unused variable 'score' [-Wunused-variable] double score = ff->Energy(false); // no gradients ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/conformersearch.cpp: In member function 'int OpenBabel::OBConformerSearch::local_opt()': /usr/src/RPM/BUILD/openbabel-2.4.1/src/conformersearch.cpp:728:19: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] for (i = 1; i <= m_rotorList.Size(); ++i, rotor = m_rotorList.NextRotor(ri)) ~~^~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/conformersearch.cpp: In member function 'int OpenBabel::OBConformerSearch::reproduce(OpenBabel::RotorKey&, OpenBabel::RotorKey&)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/conformersearch.cpp:789:16: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] if (iniche > -1) ~~~~~~~^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/conformersearch.cpp: In member function 'int OpenBabel::OBConformerSearch::share_fitness()': /usr/src/RPM/BUILD/openbabel-2.4.1/src/conformersearch.cpp:944:37: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] if ((dynamic_niches.size () < nb_niches) && (dynamic_niches.size () %2)) ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/conformersearch.cpp:959:30: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] if (dist < min_dist ) ~~~~~^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/conformersearch.cpp:972:18: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] if (imax == -1) ~~~~~^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/conformersearch.cpp:988:40: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] if (dynamic_niches.size () < nb_niches) ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/conformersearch.cpp:915:10: warning: unused variable 'flag_niched' [-Wunused-variable] bool flag_niched = false; ^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/conformersearch.cpp: In member function 'double OpenBabel::OBConformerSearch::sharing_generation()': /usr/src/RPM/BUILD/openbabel-2.4.1/src/conformersearch.cpp:1077:20: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] while (ninsert < ((half_pop * 2) / 3)) ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/conformersearch.cpp:1086:24: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] if (iround < imax) ~~~~~~~^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/conformersearch.cpp:1094:33: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] if (ninsert >= half_pop) ~~~~~~~~^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/conformersearch.cpp:1119:20: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] while (ninsert < half_pop) ~~~~~~~~^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/conformersearch.cpp:1043:23: warning: unused variable 'lowest' [-Wunused-variable] double sum = 0.0, lowest = 0.0, highest = 0.0; ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/conformersearch.cpp:1043:37: warning: unused variable 'highest' [-Wunused-variable] double sum = 0.0, lowest = 0.0, highest = 0.0; ^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/conformersearch.cpp: In member function 'double OpenBabel::OBConformerSearch::MakeSelection()': /usr/src/RPM/BUILD/openbabel-2.4.1/src/conformersearch.cpp:492:31: warning: 'highest' may be used uninitialized in this function [-Wmaybe-uninitialized] double sum = 0.0, lowest, highest; ^~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/stereo/squareplanar.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/facade.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/stereo/facade.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/stereo/facade.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 20%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/stereo/cistrans.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/stereo/tetrahedral.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 19%] Building CXX object src/CMakeFiles/openbabel.dir/math/align.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/math/align.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/math/align.cpp In file included from /usr/include/eigen2/Eigen/Core:103, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/math/align.h:26, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/math/align.cpp:24: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28, from /usr/include/eigen2/Eigen/Geometry:8, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/math/align.cpp:29: /usr/include/eigen2/Eigen/src/Array/Functors.h: At global scope: /usr/include/eigen2/Eigen/src/Array/Functors.h:266:31: warning: 'template class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/8/bits/stl_function.h:1368, from /usr/include/c++/8/string:48, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/mol.h:35, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/math/align.h:22, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/math/align.cpp:24: /usr/include/c++/8/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28, from /usr/include/eigen2/Eigen/Geometry:8, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/math/align.cpp:29: /usr/include/eigen2/Eigen/src/Array/Functors.h:270:31: warning: 'template class std::binder1st' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/8/bits/stl_function.h:1368, from /usr/include/c++/8/string:48, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/mol.h:35, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/math/align.h:22, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/math/align.cpp:24: /usr/include/c++/8/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/math/align.cpp: In member function 'std::vector OpenBabel::OBAlign::GetAlignment()': /usr/src/RPM/BUILD/openbabel-2.4.1/src/math/align.cpp:399:45: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] for (vector::size_type i=0; i& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::_set(const Eigen::MatrixBase&) [with OtherDerived = Eigen::Product, const Eigen::Transpose >&, 0>; _Scalar = double; int _Rows = 10000; int _Cols = 10000; int _Options = 2; int _MaxRows = 10000; int _MaxCols = 10000]': /usr/include/eigen2/Eigen/src/Core/Matrix.h:283:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::Product, const Eigen::Transpose >&, 0>; _Scalar = double; int _Rows = 10000; int _Cols = 10000; int _Options = 2; int _MaxRows = 10000; int _MaxCols = 10000]' /usr/src/RPM/BUILD/openbabel-2.4.1/src/math/align.cpp:283:62: required from here /usr/include/eigen2/Eigen/src/Core/Matrix.h:533:58: warning: enum constant in boolean context [-Wint-in-bool-context] _set_selector(other.derived(), typename ei_meta_if::ret()); ^~~~~~~~~~ /usr/include/eigen2/Eigen/src/Core/Matrix.h: In instantiation of 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::_set(const Eigen::MatrixBase&) [with OtherDerived = Eigen::Product >&, const Eigen::Matrix&, 1>; _Scalar = double; int _Rows = 10000; int _Cols = 10000; int _Options = 2; int _MaxRows = 10000; int _MaxCols = 10000]': /usr/include/eigen2/Eigen/src/Core/Matrix.h:283:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::Product >&, const Eigen::Matrix&, 1>; _Scalar = double; int _Rows = 10000; int _Cols = 10000; int _Options = 2; int _MaxRows = 10000; int _MaxCols = 10000]' /usr/src/RPM/BUILD/openbabel-2.4.1/src/math/align.cpp:286:40: required from here /usr/include/eigen2/Eigen/src/Core/Matrix.h:533:58: warning: enum constant in boolean context [-Wint-in-bool-context] make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 21%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/stereo/perception.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/stereo/perception.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/stereo/perception.cpp: In function 'bool OpenBabel::TetStereoToWedgeHash(OpenBabel::OBMol&, std::map&, std::map&)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/stereo/perception.cpp:2780:23: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] if (score > max_bond_score) { ~~~~~~^~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/stereo/perception.cpp:2712:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for (std::vector::iterator data = vdata.begin(); data != vdata.end(); ++data) ^~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/stereo/perception.cpp:2849:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' return true; ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/stereo/perception.cpp: In function 'void OpenBabel::StereoRefToImplicit(OpenBabel::OBMol&, OpenBabel::OBStereo::Ref)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/stereo/perception.cpp:2871:16: warning: 'template class std::binder1st' is deprecated [-Wdeprecated-declarations] const std::binder1st > equal_to_atomId = std::bind1st (equal_to(), atomId); ^~~~~~~~~ In file included from /usr/include/c++/8/bits/stl_function.h:1368, from /usr/include/c++/8/bits/stl_tree.h:65, from /usr/include/c++/8/map:60, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/base.h:26, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/stereo/stereo.h:27, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/stereo/tetranonplanar.h:27, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/stereo/tetrahedral.h:27, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/stereo/perception.cpp:25: /usr/include/c++/8/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/stereo/perception.cpp: In function 'void OpenBabel::ImplicitRefToStereo(OpenBabel::OBMol&, OpenBabel::OBStereo::Ref, OpenBabel::OBStereo::Ref)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/stereo/perception.cpp:2903:16: warning: 'template class std::binder1st' is deprecated [-Wdeprecated-declarations] const std::binder1st > equal_to_implicitRef = std::bind1st (equal_to(), (OBStereo::Ref) OBStereo::ImplicitRef); ^~~~~~~~~ In file included from /usr/include/c++/8/bits/stl_function.h:1368, from /usr/include/c++/8/bits/stl_tree.h:65, from /usr/include/c++/8/map:60, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/base.h:26, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/stereo/stereo.h:27, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/stereo/tetranonplanar.h:27, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/stereo/tetrahedral.h:27, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/stereo/perception.cpp:25: /usr/include/c++/8/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 21%] Linking CXX shared library ../lib/libopenbabel.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/openbabel.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -Wl,-soname,libopenbabel.so.5 -o ../lib/libopenbabel.so.5.0.0 CMakeFiles/openbabel.dir/alias.cpp.o CMakeFiles/openbabel.dir/atom.cpp.o CMakeFiles/openbabel.dir/base.cpp.o CMakeFiles/openbabel.dir/bitvec.cpp.o CMakeFiles/openbabel.dir/bond.cpp.o CMakeFiles/openbabel.dir/bondtyper.cpp.o CMakeFiles/openbabel.dir/builder.cpp.o CMakeFiles/openbabel.dir/canon.cpp.o CMakeFiles/openbabel.dir/chains.cpp.o CMakeFiles/openbabel.dir/chargemodel.cpp.o CMakeFiles/openbabel.dir/chiral.cpp.o CMakeFiles/openbabel.dir/data.cpp.o CMakeFiles/openbabel.dir/data_utilities.cpp.o CMakeFiles/openbabel.dir/descriptor.cpp.o CMakeFiles/openbabel.dir/fingerprint.cpp.o CMakeFiles/openbabel.dir/forcefield.cpp.o CMakeFiles/openbabel.dir/format.cpp.o CMakeFiles/openbabel.dir/generic.cpp.o CMakeFiles/openbabel.dir/graphsym.cpp.o CMakeFiles/openbabel.dir/grid.cpp.o CMakeFiles/openbabel.dir/griddata.cpp.o CMakeFiles/openbabel.dir/isomorphism.cpp.o CMakeFiles/openbabel.dir/kekulize.cpp.o CMakeFiles/openbabel.dir/locale.cpp.o CMakeFiles/openbabel.dir/matrix.cpp.o CMakeFiles/openbabel.dir/mcdlutil.cpp.o CMakeFiles/openbabel.dir/molchrg.cpp.o CMakeFiles/openbabel.dir/mol.cpp.o CMakeFiles/openbabel.dir/obconversion.cpp.o CMakeFiles/openbabel.dir/oberror.cpp.o CMakeFiles/openbabel.dir/obiter.cpp.o CMakeFiles/openbabel.dir/obutil.cpp.o CMakeFiles/openbabel.dir/op.cpp.o CMakeFiles/openbabel.dir/parsmart.cpp.o CMakeFiles/openbabel.dir/patty.cpp.o CMakeFiles/openbabel.dir/phmodel.cpp.o CMakeFiles/openbabel.dir/plugin.cpp.o CMakeFiles/openbabel.dir/pointgroup.cpp.o CMakeFiles/openbabel.dir/query.cpp.o CMakeFiles/openbabel.dir/rand.cpp.o CMakeFiles/openbabel.dir/residue.cpp.o CMakeFiles/openbabel.dir/ring.cpp.o CMakeFiles/openbabel.dir/rotamer.cpp.o CMakeFiles/openbabel.dir/rotor.cpp.o CMakeFiles/openbabel.dir/spectrophore.cpp.o CMakeFiles/openbabel.dir/tautomer.cpp.o CMakeFiles/openbabel.dir/tokenst.cpp.o CMakeFiles/openbabel.dir/transform.cpp.o CMakeFiles/openbabel.dir/typer.cpp.o CMakeFiles/openbabel.dir/obmolecformat.cpp.o CMakeFiles/openbabel.dir/conformersearch.cpp.o CMakeFiles/openbabel.dir/confsearch.cpp.o CMakeFiles/openbabel.dir/distgeom.cpp.o CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o CMakeFiles/openbabel.dir/depict/depict.cpp.o CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o CMakeFiles/openbabel.dir/math/spacegroup.cpp.o CMakeFiles/openbabel.dir/math/transform3d.cpp.o CMakeFiles/openbabel.dir/math/vector3.cpp.o CMakeFiles/openbabel.dir/math/align.cpp.o CMakeFiles/openbabel.dir/stereo/stereo.cpp.o CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o CMakeFiles/openbabel.dir/stereo/perception.cpp.o CMakeFiles/openbabel.dir/stereo/facade.cpp.o -lm -ldl -lz cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/cmake -E cmake_symlink_library ../lib/libopenbabel.so.5.0.0 ../lib/libopenbabel.so.5 ../lib/libopenbabel.so make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 21%] Built target openbabel make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/CMakeFiles/plugin_descriptors.dir/build.make src/CMakeFiles/plugin_descriptors.dir/depend make -f src/CMakeFiles/plugin_fingerprints.dir/build.make src/CMakeFiles/plugin_fingerprints.dir/depend make -f src/CMakeFiles/plugin_ops.dir/build.make src/CMakeFiles/plugin_ops.dir/depend make -f src/CMakeFiles/plugin_forcefields.dir/build.make src/CMakeFiles/plugin_forcefields.dir/depend make -f src/CMakeFiles/plugin_charges.dir/build.make src/CMakeFiles/plugin_charges.dir/depend make -f src/formats/CMakeFiles/chemdoodlejsonformat.dir/build.make src/formats/CMakeFiles/chemdoodlejsonformat.dir/depend make -f src/formats/CMakeFiles/xmlformat.dir/build.make 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-DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/xmlformat.dir/xml/xmlformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xml/xmlformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 21%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/ops/addinindex.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 21%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/descriptors/cmpdfilter.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 21%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/eem.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_charges_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_charges.dir/charges/eem.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/charges/eem.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 21%] Building CXX object src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_fingerprints_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/fingerprints/finger2.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 21%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/ops/addpolarh.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 21%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_charges_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/charges/gasteiger.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 21%] Building CXX object src/formats/CMakeFiles/xmlformat.dir/xml/xml.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dxmlformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/xmlformat.dir/xml/xml.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xml/xml.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 25%] Linking CXX shared module ../../lib/xmlformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/xmlformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/xmlformat.so CMakeFiles/xmlformat.dir/xml/xmlformat.cpp.o CMakeFiles/xmlformat.dir/xml/xml.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm -lxml2 ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 25%] Built target xmlformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/cdxmlformat.dir/build.make src/formats/CMakeFiles/cdxmlformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/cdxmlformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/cdxmlformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/cdxmlformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/cdxmlformat.dir/depend.internal". Scanning dependencies of target cdxmlformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/cdxmlformat.dir/build.make src/formats/CMakeFiles/cdxmlformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 21%] Building CXX object src/formats/CMakeFiles/chemdoodlejsonformat.dir/json/chemdoodlejsonformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dchemdoodlejsonformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/chemdoodlejsonformat.dir/json/chemdoodlejsonformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/json/chemdoodlejsonformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/json/chemdoodlejsonformat.cpp: In member function 'virtual bool OpenBabel::ChemDoodleJSONFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/json/chemdoodlejsonformat.cpp:103:30: warning: comparison of integer expressions of different signedness: 'Json::Value::ArrayIndex' {aka 'unsigned int'} and 'int' [-Wsign-compare] if (inRoot["m"].size() > currentMolIndex) { ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/json/chemdoodlejsonformat.cpp:159:23: warning: 'y' may be used uninitialized in this function [-Wmaybe-uninitialized] patom->SetVector(x,y,z); ~~~~~~~~~~~~~~~~^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/json/chemdoodlejsonformat.cpp:159:23: warning: 'x' may be used uninitialized in this function [-Wmaybe-uninitialized] make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 21%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/descriptors/groupcontrib.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 24%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/none.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_charges_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_charges.dir/charges/none.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/charges/none.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 23%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/ops/addnonpolarh.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 22%] Building CXX object src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_fingerprints_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/fingerprints/finger3.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/fingerprints/finger3.cpp: In member function 'virtual bool OpenBabel::PatternFP::GetFingerprint(OpenBabel::OBBase*, std::vector&, int)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/fingerprints/finger3.cpp:108:13: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] while(n < _bitcount) ~~^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/fingerprints/finger3.cpp: In member function 'virtual std::__cxx11::string OpenBabel::PatternFP::DescribeBits(std::vector, bool)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/fingerprints/finger3.cpp:257:34: warning: operation on 'div' may be undefined [-Wsequence-point] ngrp = (num + div -1)/div--; //rounds up ~~~^~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 25%] Building CXX object src/formats/CMakeFiles/cdxmlformat.dir/xml/cdxmlformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dcdxmlformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/cdxmlformat.dir/xml/cdxmlformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xml/cdxmlformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 26%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/descriptors/filters.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 26%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/ops/canonical.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 26%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_charges_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/charges/mmff94.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 26%] Building CXX object src/CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_fingerprints_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/fingerprints/fingerecfp.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 26%] Linking CXX shared module ../lib/plugin_fingerprints.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_fingerprints.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../lib/plugin_fingerprints.so CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o -lm -ldl -lz ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 26%] Built target plugin_fingerprints make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/png2format.dir/build.make src/formats/CMakeFiles/png2format.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/png2format.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/png2format.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/png2format.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/png2format.dir/depend.internal". Scanning dependencies of target png2format make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/png2format.dir/build.make src/formats/CMakeFiles/png2format.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 26%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/descriptors/inchidescriptor.cpp In file included from /usr/src/RPM/BUILD/openbabel-2.4.1/src/descriptors/inchidescriptor.cpp:24: /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/inchiformat.h: In member function 'bool OpenBabel::InChIFormat::InchiLess::operator()(const string&, const string&) const': /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/inchiformat.h:150:13: warning: this 'while' clause does not guard... [-Wmisleading-indentation] while(p1!=s1.end() && isdigit(*p1++)); --p1; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/inchiformat.h:150:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while' while(p1!=s1.end() && isdigit(*p1++)); --p1; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/inchiformat.h:155:13: warning: this 'while' clause does not guard... [-Wmisleading-indentation] while(p2!=s2.end() && isdigit(*p2++)); --p2; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/inchiformat.h:155:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while' while(p2!=s2.end() && isdigit(*p2++)); --p2; ^~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 26%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/changecell.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/changecell.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/ops/changecell.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/ops/changecell.cpp: In member function 'virtual bool OpenBabel::OpChangeCell::Do(OpenBabel::OBBase*, const char*, OpenBabel::OBOp::OpMap*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/ops/changecell.cpp:83:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] for(int i = 0; i < vcvs.size(); i++) ~~^~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/ops/changecell.cpp:114:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] for(int i = 0; i < vcvs.size(); i++) ~~^~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 26%] Building CXX object src/formats/CMakeFiles/cdxmlformat.dir/xml/xml.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dcdxmlformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/cdxmlformat.dir/xml/xml.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xml/xml.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 21%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldgaff.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 26%] Linking CXX shared module ../../lib/cdxmlformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cdxmlformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/cdxmlformat.so CMakeFiles/cdxmlformat.dir/xml/cdxmlformat.cpp.o CMakeFiles/cdxmlformat.dir/xml/xml.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm -lxml2 ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 21%] Building CXX object src/formats/CMakeFiles/cmlformat.dir/xml/cmlformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dcmlformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/cmlformat.dir/xml/cmlformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xml/cmlformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xml/cmlformat.cpp: In member function 'bool OpenBabel::CMLFormat::DoHCounts()': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xml/cmlformat.cpp:929:27: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] for(unsigned i=0;isecond - explH;++i) ~^~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xml/cmlformat.cpp: In member function 'void OpenBabel::CMLFormat::WriteMetadataList(OpenBabel::OBMol&)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xml/cmlformat.cpp:1232:26: warning: unused variable 'C_TITLE' [-Wunused-variable] static const xmlChar C_TITLE[] = "title"; ^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xml/cmlformat.cpp: In member function 'std::__cxx11::string OpenBabel::CMLFormat::getTimestr()': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xml/cmlformat.cpp:1282:12: warning: variable 'time_res' set but not used [-Wunused-but-set-variable] size_t time_res; /* Result of strftime */ ^~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xml/cmlformat.cpp: In member function 'virtual bool OpenBabel::CMLFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xml/cmlformat.cpp:1329:26: warning: unused variable 'C_DESCRIPTION' [-Wunused-variable] static const xmlChar C_DESCRIPTION[] = "description"; ^~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xml/cmlformat.cpp: In member function 'bool OpenBabel::CMLFormat::WriteVibrationData(OpenBabel::OBMol&)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xml/cmlformat.cpp:2289:26: warning: unused variable 'C_SCALAR' [-Wunused-variable] static const xmlChar C_SCALAR[] = "scalar"; ^~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 26%] Built target cdxmlformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/cmlreactformat.dir/build.make src/formats/CMakeFiles/cmlreactformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/cmlreactformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/cmlreactformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/cmlreactformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/cmlreactformat.dir/depend.internal". Scanning dependencies of target cmlreactformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/cmlreactformat.dir/build.make src/formats/CMakeFiles/cmlreactformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 26%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_charges_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/charges/fromfile.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/charges/fromfile.cpp: In member function 'virtual bool OpenBabel::FromFileCharges::ComputeCharges(OpenBabel::OBMol&, const char*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/charges/fromfile.cpp:96:22: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] for ( int i = 1; i <= mol.NumAtoms(); i++) ~~^~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 27%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/eqeq.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_charges_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_charges.dir/charges/eqeq.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/charges/eqeq.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 26%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/descriptors/smartsdescriptors.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 25%] Building CXX object src/formats/CMakeFiles/chemdoodlejsonformat.dir/json/jsoncpp.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dchemdoodlejsonformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/chemdoodlejsonformat.dir/json/jsoncpp.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/json/jsoncpp.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 27%] Linking CXX shared module ../lib/plugin_descriptors.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_descriptors.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../lib/plugin_descriptors.so CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.cpp.o CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.cpp.o CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o -lm -ldl -lz ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 27%] Built target plugin_descriptors make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/xtcformat.dir/build.make src/formats/CMakeFiles/xtcformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/xtcformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/xtcformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/xtcformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/xtcformat.dir/depend.internal". Scanning dependencies of target xtcformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/xtcformat.dir/build.make src/formats/CMakeFiles/xtcformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 26%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/delpolarh.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/delpolarh.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/ops/delpolarh.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 26%] Building CXX object src/formats/CMakeFiles/png2format.dir/png2format.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dpng2format_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/png2format.dir/png2format.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/png2format.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/png2format.cpp: In member function 'virtual bool OpenBabel::PNG2Format::WriteChemObject(OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/png2format.cpp:102:42: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] bool nomore = _nmax && (_objects.size()==_nmax); ~~~~~~~~~~~~~~~^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/png2format.cpp:132:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] pConv->SetLast(n==_objects.size()); ~^~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 27%] Building CXX object src/formats/CMakeFiles/chemdoodlejsonformat.dir/json/customwriter.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dchemdoodlejsonformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/chemdoodlejsonformat.dir/json/customwriter.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/json/customwriter.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/json/customwriter.cpp: In member function 'void Json::CustomWriter::writeValue(const Json::Value&, std::__cxx11::string&, bool)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/json/customwriter.cpp:83:34: warning: comparison of integer expressions of different signedness: 'std::__cxx11::basic_string::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] if (valLine.length() > maxWidth_) ~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/json/customwriter.cpp:96:36: warning: comparison of integer expressions of different signedness: 'int' and 'Json::Value::ArrayIndex' {aka 'unsigned int'} [-Wsign-compare] for ( int index =0; index < value.size(); ++index ) ~~~~~~^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/json/customwriter.cpp:104:24: warning: comparison of integer expressions of different signedness: 'int' and 'Json::Value::ArrayIndex' {aka 'unsigned int'} [-Wsign-compare] if ( index < value.size()-1 ) ~~~~~~^~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/json/customwriter.cpp:123:34: warning: comparison of integer expressions of different signedness: 'std::__cxx11::basic_string::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] if (valLine.length() > maxWidth_) ~~~~~~~~~~~~~~~~~^~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 27%] Linking CXX shared module ../../lib/chemdoodlejsonformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/chemdoodlejsonformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/chemdoodlejsonformat.so CMakeFiles/chemdoodlejsonformat.dir/json/chemdoodlejsonformat.cpp.o CMakeFiles/chemdoodlejsonformat.dir/json/jsoncpp.cpp.o CMakeFiles/chemdoodlejsonformat.dir/json/customwriter.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 27%] Built target chemdoodlejsonformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/chemdrawcdx.dir/build.make src/formats/CMakeFiles/chemdrawcdx.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/chemdrawcdx.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/chemdrawcdx.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/chemdrawcdx.dir/depend.internal". 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Scanning dependencies of target chemdrawcdx make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/chemdrawcdx.dir/build.make src/formats/CMakeFiles/chemdrawcdx.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 27%] Building CXX object src/formats/CMakeFiles/cmlformat.dir/xml/xml.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dcmlformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/cmlformat.dir/xml/xml.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xml/xml.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 27%] Building CXX object src/formats/CMakeFiles/png2format.dir/__/depict/cairopainter.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dpng2format_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/png2format.dir/__/depict/cairopainter.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/depict/cairopainter.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 27%] Linking CXX shared module ../../lib/cmlformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cmlformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/cmlformat.so CMakeFiles/cmlformat.dir/xml/cmlformat.cpp.o CMakeFiles/cmlformat.dir/xml/xml.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm -lxml2 ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 27%] Built target cmlformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/rxnformat.dir/build.make src/formats/CMakeFiles/rxnformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/rxnformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/rxnformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/rxnformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/rxnformat.dir/depend.internal". Scanning dependencies of target rxnformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/rxnformat.dir/build.make src/formats/CMakeFiles/rxnformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 27%] Linking CXX shared module ../../lib/png2format.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/png2format.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/png2format.so CMakeFiles/png2format.dir/png2format.cpp.o CMakeFiles/png2format.dir/__/depict/cairopainter.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 27%] Built target png2format make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/yasaraformat.dir/build.make src/formats/CMakeFiles/yasaraformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/yasaraformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/yasaraformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/yasaraformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/yasaraformat.dir/depend.internal". Scanning dependencies of target yasaraformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/yasaraformat.dir/build.make src/formats/CMakeFiles/yasaraformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 27%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/delnonpolarh.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/delnonpolarh.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/ops/delnonpolarh.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 27%] Building CXX object src/formats/CMakeFiles/xtcformat.dir/xtcformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dxtcformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/xtcformat.dir/xtcformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xtcformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xtcformat.cpp: In member function 'virtual bool OpenBabel::XTCFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xtcformat.cpp:152:18: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] if (natoms != mol.NumAtoms()) { ~~~~~~~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xtcformat.cpp: In member function 'int OpenBabel::XTCFormat::sizeofint(int)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xtcformat.cpp:394:17: warning: comparison of integer expressions of different signedness: 'const int' and 'unsigned int' [-Wsign-compare] while (size >= num && num_of_bits < 32) { ~~~~~^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xtcformat.cpp: In member function 'int OpenBabel::XTCFormat::sizeofints(int, unsigned int*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xtcformat.cpp:434:32: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] while (bytes[num_of_bytes] >= num) { ~~~~~~~~~~~~~~~~~~~~^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xtcformat.cpp: In member function 'void OpenBabel::XTCFormat::sendints(int*, int, int, unsigned int*, unsigned int*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xtcformat.cpp:489:21: warning: comparison of integer expressions of different signedness: 'const int' and 'unsigned int' [-Wsign-compare] if (num_of_bits >= num_of_bytes * 8) { ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xtcformat.cpp:490:21: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] for (i = 0; i < num_of_bytes; i++) { ~~^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xtcformat.cpp:495:21: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] for (i = 0; i < num_of_bytes-1; i++) { ~~^~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xtcformat.cpp: In member function 'int OpenBabel::XTCFormat::receivebits(int*, int)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xtcformat.cpp:530:20: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] if (lastbits < num_of_bits) { ~~~~~~~~~^~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xtcformat.cpp: In member function 'int OpenBabel::XTCFormat::xdr3dfcoord(XDR*, float*, int*, float*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xtcformat.cpp:771:23: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] while (smallidx < LASTIDX && magicints[smallidx] < mindiff) { ^ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xtcformat.cpp:977:37: warning: 'bitsizeint[2]' may be used uninitialized in this function [-Wmaybe-uninitialized] thiscoord[2] = receivebits(buf, bitsizeint[2]); ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xtcformat.cpp:976:37: warning: 'bitsizeint[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] thiscoord[1] = receivebits(buf, bitsizeint[1]); ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xtcformat.cpp:975:37: warning: 'bitsizeint[0]' may be used uninitialized in this function [-Wmaybe-uninitialized] thiscoord[0] = receivebits(buf, bitsizeint[0]); ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xtcformat.cpp:788:30: warning: 'prevcoord[2]' may be used uninitialized in this function [-Wmaybe-uninitialized] abs(thiscoord[2] - prevcoord[2]) < larger) { ~~~~~~~~~~~~~^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xtcformat.cpp:787:30: warning: 'prevcoord[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] abs(thiscoord[1] - prevcoord[1]) < larger && ~~~~~~~~~~~~~^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xtcformat.cpp:786:30: warning: 'prevcoord[0]' may be used uninitialized in this function [-Wmaybe-uninitialized] abs(thiscoord[0] - prevcoord[0]) < larger && ~~~~~~~~~~~~~^~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 28%] Linking CXX shared module ../../lib/xtcformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/xtcformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/xtcformat.so CMakeFiles/xtcformat.dir/xtcformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 28%] Built target xtcformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/unichemformat.dir/build.make src/formats/CMakeFiles/unichemformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/unichemformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/unichemformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/unichemformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/unichemformat.dir/depend.internal". Scanning dependencies of target unichemformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/unichemformat.dir/build.make src/formats/CMakeFiles/unichemformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 28%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/gen2D.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/gen2D.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/ops/gen2D.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 27%] Building CXX object src/formats/CMakeFiles/yasaraformat.dir/yasaraformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dyasaraformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/yasaraformat.dir/yasaraformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/yasaraformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/yasaraformat.cpp: In function 'OpenBabel::mobatom* OpenBabel::mob_next(OpenBabel::mobatom*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/yasaraformat.cpp:39:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] #define mem_inc(POINTER,INC) (*((char**)&(POINTER))+=(INC)) ~^~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/yasaraformat.cpp:221:3: note: in expansion of macro 'mem_inc' { mem_inc(atom,mob_atomsize(atom)); ^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/yasaraformat.cpp: In member function 'virtual bool OpenBabel::YOBFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/yasaraformat.cpp:368:21: warning: variable 'reslen' set but not used [-Wunused-but-set-variable] int /*samenames,*/reslen,charged; ^~~~~~ In file included from /usr/include/string.h:507, from /usr/include/c++/8/cstring:42, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/data.h:26, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/mol.h:45, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/obmolecformat.h:37, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/yasaraformat.cpp:34: In function 'void* memcpy(void*, const void*, size_t)', inlined from 'virtual bool OpenBabel::YOBFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)' at /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/yasaraformat.cpp:432:82: /usr/include/bits/string_fortified.h:34:33: warning: 'void* __builtin_memcpy(void*, const void*, unsigned int)' accessing 4 bytes at offsets 0 and 1 overlaps 3 bytes at offset 1 [-Wrestrict] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/yasaraformat.cpp: In member function 'virtual bool OpenBabel::YOBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/yasaraformat.cpp:562:32: warning: '__builtin___snprintf_chk' output truncated before the last format character [-Wformat-truncation=] snprintf(&buffer[12], 4, "%4d",res->GetNum()); } ^~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6400, from /usr/include/c++/8/string:52, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/mol.h:35, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/obmolecformat.h:37, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/yasaraformat.cpp:34: /usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 5 and 12 bytes into a destination of size 4 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 27%] Building CXX object src/formats/CMakeFiles/rxnformat.dir/rxnformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Drxnformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/rxnformat.dir/rxnformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/rxnformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/rxnformat.cpp: In member function 'virtual bool OpenBabel::RXNFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/rxnformat.cpp:228:14: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] for(i=0;iNumReactants();i++) ~^~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/rxnformat.cpp:235:14: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] for(i=0;iNumProducts();i++) ~^~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 29%] Linking CXX shared module ../../lib/yasaraformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/yasaraformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/yasaraformat.so CMakeFiles/yasaraformat.dir/yasaraformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 29%] Built target yasaraformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/thermoformat.dir/build.make src/formats/CMakeFiles/thermoformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 27%] Building CXX object src/formats/CMakeFiles/cmlreactformat.dir/xml/cmlreactformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dcmlreactformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/cmlreactformat.dir/xml/cmlreactformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xml/cmlreactformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xml/cmlreactformat.cpp: In member function 'virtual bool OpenBabel::CMLReactFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xml/cmlreactformat.cpp:516:12: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] for(i=0;iNumReactants();i++) ~^~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xml/cmlreactformat.cpp:538:12: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] for(i=0;iNumProducts();i++) ~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xml/cmlreactformat.cpp: In member function 'bool OpenBabel::CMLReactFormat::WriteRateData(OpenBabel::OBReaction*, xmlChar*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xml/cmlreactformat.cpp:702:9: warning: enumeration value 'ARRHENIUS' not handled in switch [-Wswitch] switch(pRD->ReactionType) ^ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xml/cmlreactformat.cpp:730:9: warning: enumeration value 'ARRHENIUS' not handled in switch [-Wswitch] switch(pRD->ReactionType) ^ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xml/cmlreactformat.cpp:730:9: warning: enumeration value 'SRI' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xml/cmlreactformat.cpp: In member function 'void OpenBabel::CMLReactFormat::WriteMetadataList(OpenBabel::OBReaction&)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xml/cmlreactformat.cpp:769:26: warning: unused variable 'C_TITLE' [-Wunused-variable] static const xmlChar C_TITLE[] = "title"; ^~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/thermoformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/thermoformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/thermoformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/thermoformat.dir/depend.internal". Scanning dependencies of target thermoformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/thermoformat.dir/build.make src/formats/CMakeFiles/thermoformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 29%] Linking CXX shared module ../../lib/rxnformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/rxnformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/rxnformat.so CMakeFiles/rxnformat.dir/rxnformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 29%] Built target rxnformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/pqrformat.dir/build.make src/formats/CMakeFiles/pqrformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/pqrformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/pqrformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/pqrformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/pqrformat.dir/depend.internal". Scanning dependencies of target pqrformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/pqrformat.dir/build.make src/formats/CMakeFiles/pqrformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 29%] Building CXX object src/formats/CMakeFiles/unichemformat.dir/unichemformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dunichemformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/unichemformat.dir/unichemformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/unichemformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 29%] Linking CXX shared module ../../lib/unichemformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/unichemformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/unichemformat.so CMakeFiles/unichemformat.dir/unichemformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 29%] Built target unichemformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/pointcloudformat.dir/build.make src/formats/CMakeFiles/pointcloudformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/pointcloudformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/pointcloudformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/pointcloudformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/pointcloudformat.dir/depend.internal". Scanning dependencies of target pointcloudformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/pointcloudformat.dir/build.make src/formats/CMakeFiles/pointcloudformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 26%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldghemical.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 27%] Building CXX object src/formats/CMakeFiles/chemdrawcdx.dir/chemdrawcdx.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dchemdrawcdx_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/chemdrawcdx.dir/chemdrawcdx.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/chemdrawcdx.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/chemdrawcdx.cpp: In member function 'bool OpenBabel::ChemDrawBinaryXFormat::DoReaction(OpenBabel::CDXReader&, OpenBabel::OBReaction*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/chemdrawcdx.cpp:331:25: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] for(unsigned i=0;iNumAtoms();++idx) ~~~^~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/chemdrawcdx.cpp: In member function 'bool OpenBabel::ChemDrawBinaryXFormat::DoFragmentImpl(OpenBabel::CDXReader&, OpenBabel::OBMol*, std::map&, std::map&)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/chemdrawcdx.cpp:454:27: warning: variable 'hasElement' set but not used [-Wunused-but-set-variable] bool isAlias=false, hasElement=false; ^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/chemdrawcdx.cpp:591:28: warning: 'endIdx' may be used uninitialized in this function [-Wmaybe-uninitialized] if(!order || !bgnIdx || !endIdx) ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/chemdrawcdx.cpp:591:17: warning: 'bgnIdx' may be used uninitialized in this function [-Wmaybe-uninitialized] if(!order || !bgnIdx || !endIdx) ~~~~~~~^~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 27%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/qeq.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_charges_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_charges.dir/charges/qeq.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/charges/qeq.cpp In file included from /usr/include/eigen2/Eigen/Core:103, from /usr/include/eigen2/Eigen/LU:4, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/charges/qeq.h:29, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/charges/qeq.cpp:21: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/SVD:23, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/charges/qeq.h:30, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/charges/qeq.cpp:21: /usr/include/eigen2/Eigen/src/SVD/SVD.h: In instantiation of 'bool Eigen::SVD::solve(const Eigen::MatrixBase&, ResultType*) const [with OtherDerived = Eigen::Matrix; ResultType = Eigen::Matrix; MatrixType = Eigen::Matrix]': /usr/src/RPM/BUILD/openbabel-2.4.1/src/charges/qeq.cpp:335:39: required from here /usr/include/eigen2/Eigen/src/SVD/SVD.h:528:13: warning: unused variable 'rows' [-Wunused-variable] const int rows = m_matU.rows(); ^~~~ In file included from /usr/include/eigen2/Eigen/Core:155, from /usr/include/eigen2/Eigen/LU:4, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/charges/qeq.h:29, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/charges/qeq.cpp:21: /usr/include/eigen2/Eigen/src/Core/CacheFriendlyProduct.h: In instantiation of 'void Eigen::ei_cache_friendly_product_colmajor_times_vector(int, const Scalar*, int, const RhsType&, Scalar*) [with Scalar = double; RhsType = Eigen::Matrix]': /usr/include/eigen2/Eigen/src/Core/SolveTriangular.h:189:56: required from 'static void Eigen::ei_solve_triangular_selector::run(const Lhs&, Rhs&) [with Lhs = Eigen::Flagged, 10000, 10000, 1, 32>, 2304, 0>; Rhs = Eigen::Block, 10000, 10000, 1, 32>; int UpLo = 2048]' /usr/include/eigen2/Eigen/src/Core/SolveTriangular.h:248:81: required from 'void Eigen::MatrixBase::solveTriangularInPlace(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Block, 10000, 10000, 1, 32>; Derived = Eigen::Flagged, 10000, 10000, 1, 32>, 2304, 0>]' /usr/include/eigen2/Eigen/src/LU/LU.h:499:3: required from 'bool Eigen::LU::solve(const Eigen::MatrixBase&, ResultType*) const [with OtherDerived = Eigen::Matrix; ResultType = Eigen::Matrix; MatrixType = Eigen::Matrix]' /usr/src/RPM/BUILD/openbabel-2.4.1/src/charges/qeq.cpp:313:39: required from here /usr/include/eigen2/Eigen/src/Core/CacheFriendlyProduct.h:420:31: warning: enum constant in boolean context [-Wint-in-bool-context] int offset1 = (FirstAligned && alignmentStep==1?3:1); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /usr/include/eigen2/Eigen/src/Core/CacheFriendlyProduct.h:421:31: warning: enum constant in boolean context [-Wint-in-bool-context] int offset3 = (FirstAligned && alignmentStep==1?1:3); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /usr/include/eigen2/Eigen/src/Core/CacheFriendlyProduct.h: In instantiation of 'void Eigen::ei_cache_friendly_product_rowmajor_times_vector(const Scalar*, int, const Scalar*, int, ResType&) [with Scalar = double; ResType = Eigen::Matrix]': /usr/include/eigen2/Eigen/src/Core/Product.h:679:52: required from 'static void Eigen::ei_cache_friendly_product_selector::run(DestDerived&, const ProductType&) [with DestDerived = Eigen::Matrix; ProductType = Eigen::Product >&, const Eigen::Block, 10000, 1, 1, 32>&, 1>; int LhsRows = 10000; int RhsOrder = 0; int RhsAccess = 32]' /usr/include/eigen2/Eigen/src/Core/Product.h:761:84: required from 'Derived& Eigen::MatrixBase::lazyAssign(const Eigen::Product&) [with Lhs = const Eigen::Transpose >&; Rhs = const Eigen::Block, 10000, 1, 1, 32>&; Derived = Eigen::Matrix]' /usr/include/eigen2/Eigen/src/Core/Assign.h:447:123: required from 'static Derived& Eigen::ei_assign_selector::run(Derived&, const OtherDerived&) [with Derived = Eigen::Matrix; OtherDerived = Eigen::Product >&, const Eigen::Block, 10000, 1, 1, 32>&, 1>]' /usr/include/eigen2/Eigen/src/Core/Matrix.h:554:64: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::_set_noalias(const Eigen::MatrixBase&) [with OtherDerived = Eigen::Product >&, const Eigen::Block, 10000, 1, 1, 32>&, 1>; _Scalar = double; int _Rows = 10000; int _Cols = 1; int _Options = 2; int _MaxRows = 10000; int _MaxCols = 1]' /usr/include/eigen2/Eigen/src/Core/Matrix.h:408:7: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::MatrixBase&) [with OtherDerived = Eigen::Product >&, const Eigen::Block, 10000, 1, 1, 32>&, 1>; _Scalar = double; int _Rows = 10000; int _Cols = 1; int _Options = 2; int _MaxRows = 10000; int _MaxCols = 1]' /usr/include/eigen2/Eigen/src/SVD/SVD.h:534:53: required from 'bool Eigen::SVD::solve(const Eigen::MatrixBase&, ResultType*) const [with OtherDerived = Eigen::Matrix; ResultType = Eigen::Matrix; MatrixType = Eigen::Matrix]' /usr/src/RPM/BUILD/openbabel-2.4.1/src/charges/qeq.cpp:335:39: required from here /usr/include/eigen2/Eigen/src/Core/CacheFriendlyProduct.h:609:31: warning: enum constant in boolean context [-Wint-in-bool-context] int offset1 = (FirstAligned && alignmentStep==1?3:1); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /usr/include/eigen2/Eigen/src/Core/CacheFriendlyProduct.h:610:31: warning: enum constant in boolean context [-Wint-in-bool-context] int offset3 = (FirstAligned && alignmentStep==1?1:3); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /usr/include/eigen2/Eigen/src/Core/CacheFriendlyProduct.h: In instantiation of 'void Eigen::ei_cache_friendly_product_colmajor_times_vector(int, const Scalar*, int, const RhsType&, Scalar*) [with Scalar = double; RhsType = Eigen::Matrix]': /usr/include/eigen2/Eigen/src/Core/Product.h:590:52: required from 'static void Eigen::ei_cache_friendly_product_selector::run(DestDerived&, const ProductType&) [with DestDerived = Eigen::Matrix; ProductType = Eigen::Product&, const Eigen::Matrix&, 1>; int LhsRows = 10000; int RhsOrder = 0; int RhsAccess = 32]' /usr/include/eigen2/Eigen/src/Core/Product.h:761:84: required from 'Derived& Eigen::MatrixBase::lazyAssign(const Eigen::Product&) [with Lhs = const Eigen::Matrix&; Rhs = const Eigen::Matrix&; Derived = Eigen::Matrix]' /usr/include/eigen2/Eigen/src/Core/Assign.h:447:123: required from 'static Derived& Eigen::ei_assign_selector::run(Derived&, const OtherDerived&) [with Derived = Eigen::Matrix; OtherDerived = Eigen::Product&, const Eigen::Matrix&, 1>]' /usr/include/eigen2/Eigen/src/Core/Matrix.h:554:64: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::_set_noalias(const Eigen::MatrixBase&) [with OtherDerived = Eigen::Product&, const Eigen::Matrix&, 1>; _Scalar = double; int _Rows = 10000; int _Cols = 1; int _Options = 2; int _MaxRows = 10000; int _MaxCols = 1]' /usr/include/eigen2/Eigen/src/Core/Matrix.h:408:7: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::MatrixBase&) [with OtherDerived = Eigen::Product&, const Eigen::Matrix&, 1>; _Scalar = double; int _Rows = 10000; int _Cols = 1; int _Options = 2; int _MaxRows = 10000; int _MaxCols = 1]' /usr/include/eigen2/Eigen/src/Core/CwiseBinaryOp.h:90:47: required from 'Eigen::CwiseBinaryOp::CwiseBinaryOp(const Lhs&, const Rhs&, const BinaryOp&) [with BinaryOp = Eigen::ei_scalar_difference_op; Lhs = Eigen::Product&, const Eigen::Matrix&, 1>; Rhs = Eigen::Matrix]' /usr/include/eigen2/Eigen/src/Core/CwiseBinaryOp.h:151:10: required from 'const Eigen::CwiseBinaryOp::Scalar>, Derived, OtherDerived> Eigen::MatrixBase::operator-(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Matrix; Derived = Eigen::Product&, const Eigen::Matrix&, 1>; typename Eigen::ei_traits::Scalar = double]' /usr/src/RPM/BUILD/openbabel-2.4.1/src/charges/qeq.cpp:317:28: required from here /usr/include/eigen2/Eigen/src/Core/CacheFriendlyProduct.h:420:31: warning: enum constant in boolean context [-Wint-in-bool-context] int offset1 = (FirstAligned && alignmentStep==1?3:1); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /usr/include/eigen2/Eigen/src/Core/CacheFriendlyProduct.h:421:31: warning: enum constant in boolean context [-Wint-in-bool-context] int offset3 = (FirstAligned && alignmentStep==1?1:3); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /usr/include/eigen2/Eigen/src/Core/CacheFriendlyProduct.h: In instantiation of 'void Eigen::ei_cache_friendly_product_colmajor_times_vector(int, const Scalar*, int, const RhsType&, Scalar*) [with Scalar = double; RhsType = Eigen::Block, 10000, 10000, 1, 32>]': /usr/include/eigen2/Eigen/src/Core/Product.h:590:52: required from 'static void Eigen::ei_cache_friendly_product_selector::run(DestDerived&, const ProductType&) [with DestDerived = Eigen::Matrix; ProductType = Eigen::Product, 10000, 10000, 1, 32>&, const Eigen::Block, 10000, 10000, 1, 32>&, 1>; int LhsRows = 10000; int RhsOrder = 0; int RhsAccess = 32]' /usr/include/eigen2/Eigen/src/Core/Product.h:761:84: required from 'Derived& Eigen::MatrixBase::lazyAssign(const Eigen::Product&) [with Lhs = const Eigen::Block, 10000, 10000, 1, 32>&; Rhs = const Eigen::Block, 10000, 10000, 1, 32>&; Derived = Eigen::Matrix]' /usr/include/eigen2/Eigen/src/Core/Assign.h:447:123: required from 'static Derived& Eigen::ei_assign_selector::run(Derived&, const OtherDerived&) [with Derived = Eigen::Matrix; OtherDerived = Eigen::Product, 10000, 10000, 1, 32>&, const Eigen::Block, 10000, 10000, 1, 32>&, 1>]' /usr/include/eigen2/Eigen/src/Core/Matrix.h:554:64: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::_set_noalias(const Eigen::MatrixBase&) [with OtherDerived = Eigen::Product, 10000, 10000, 1, 32>&, const Eigen::Block, 10000, 10000, 1, 32>&, 1>; _Scalar = double; int _Rows = 10000; int _Cols = 1; int _Options = 2; int _MaxRows = 10000; int _MaxCols = 1]' /usr/include/eigen2/Eigen/src/Core/Matrix.h:408:7: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::MatrixBase&) [with OtherDerived = Eigen::Product, 10000, 10000, 1, 32>&, const Eigen::Block, 10000, 10000, 1, 32>&, 1>; _Scalar = double; int _Rows = 10000; int _Cols = 1; int _Options = 2; int _MaxRows = 10000; int _MaxCols = 1]' /usr/include/eigen2/Eigen/src/Core/CwiseBinaryOp.h:90:47: required from 'Eigen::CwiseBinaryOp::CwiseBinaryOp(const Lhs&, const Rhs&, const BinaryOp&) [with BinaryOp = Eigen::ei_scalar_difference_op; Lhs = Eigen::Block, 10000, 10000, 0, 32>; Rhs = Eigen::Product, 10000, 10000, 1, 32>&, const Eigen::Block, 10000, 10000, 1, 32>&, 1>]' /usr/include/eigen2/Eigen/src/Core/CwiseBinaryOp.h:151:10: required from 'const Eigen::CwiseBinaryOp::Scalar>, Derived, OtherDerived> Eigen::MatrixBase::operator-(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Product, 10000, 10000, 1, 32>&, const Eigen::Block, 10000, 10000, 1, 32>&, 1>; Derived = Eigen::Block, 10000, 10000, 0, 32>; typename Eigen::ei_traits::Scalar = double]' /usr/include/eigen2/Eigen/src/Core/MapBase.h:188:41: required from 'Derived& Eigen::MapBase::operator-=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::Product, 10000, 10000, 1, 32>&, const Eigen::Block, 10000, 10000, 1, 32>&, 1>; Derived = Eigen::Block, 10000, 10000, 1, 32>]' /usr/include/eigen2/Eigen/src/Core/Block.h:227:5: required from 'Eigen::Block& Eigen::Block::operator-=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::Product, 10000, 10000, 1, 32>&, const Eigen::Block, 10000, 10000, 1, 32>&, 1>; MatrixType = Eigen::Matrix; int BlockRows = 10000; int BlockCols = 10000; int PacketAccess = 1]' /usr/include/eigen2/Eigen/src/LU/LU.h:505:7: required from 'bool Eigen::LU::solve(const Eigen::MatrixBase&, ResultType*) const [with OtherDerived = Eigen::Matrix; ResultType = Eigen::Matrix; MatrixType = Eigen::Matrix]' /usr/src/RPM/BUILD/openbabel-2.4.1/src/charges/qeq.cpp:313:39: required from here /usr/include/eigen2/Eigen/src/Core/CacheFriendlyProduct.h:420:31: warning: enum constant in boolean context [-Wint-in-bool-context] int offset1 = (FirstAligned && alignmentStep==1?3:1); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /usr/include/eigen2/Eigen/src/Core/CacheFriendlyProduct.h:421:31: warning: enum constant in boolean context [-Wint-in-bool-context] int offset3 = (FirstAligned && alignmentStep==1?1:3); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /usr/include/eigen2/Eigen/src/Core/CacheFriendlyProduct.h: In instantiation of 'void Eigen::ei_cache_friendly_product_colmajor_times_vector(int, const Scalar*, int, const RhsType&, Scalar*) [with Scalar = double; RhsType = Eigen::Block, 10000, 1, 1, 32>]': /usr/include/eigen2/Eigen/src/Core/Product.h:590:52: required from 'static void Eigen::ei_cache_friendly_product_selector::run(DestDerived&, const ProductType&) [with DestDerived = Eigen::Matrix; ProductType = Eigen::Product, 10000, 10000, 1, 32>&, const Eigen::Block, 10000, 1, 1, 32>&, 1>; int LhsRows = 10000; int RhsOrder = 0; int RhsAccess = 32]' /usr/include/eigen2/Eigen/src/Core/Product.h:761:84: required from 'Derived& Eigen::MatrixBase::lazyAssign(const Eigen::Product&) [with Lhs = const Eigen::Block, 10000, 10000, 1, 32>&; Rhs = const Eigen::Block, 10000, 1, 1, 32>&; Derived = Eigen::Matrix]' /usr/include/eigen2/Eigen/src/Core/Assign.h:447:123: required from 'static Derived& Eigen::ei_assign_selector::run(Derived&, const OtherDerived&) [with Derived = Eigen::Matrix; OtherDerived = Eigen::Product, 10000, 10000, 1, 32>&, const Eigen::Block, 10000, 1, 1, 32>&, 1>]' /usr/include/eigen2/Eigen/src/Core/Matrix.h:554:64: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::_set_noalias(const Eigen::MatrixBase&) [with OtherDerived = Eigen::Product, 10000, 10000, 1, 32>&, const Eigen::Block, 10000, 1, 1, 32>&, 1>; _Scalar = double; int _Rows = 10000; int _Cols = 1; int _Options = 2; int _MaxRows = 10000; int _MaxCols = 1]' /usr/include/eigen2/Eigen/src/Core/Matrix.h:408:7: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::MatrixBase&) [with OtherDerived = Eigen::Product, 10000, 10000, 1, 32>&, const Eigen::Block, 10000, 1, 1, 32>&, 1>; _Scalar = double; int _Rows = 10000; int _Cols = 1; int _Options = 2; int _MaxRows = 10000; int _MaxCols = 1]' /usr/include/eigen2/Eigen/src/Core/MatrixBase.h:492:41: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/include/eigen2/Eigen/src/Core/MapBase.h:177:29: required from 'Derived& Eigen::MapBase::operator=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::Product, 10000, 10000, 1, 32>&, const Eigen::Block, 10000, 1, 1, 32>&, 1>; Derived = Eigen::Block, 10000, 1, 1, 32>]' /usr/include/eigen2/Eigen/src/Core/Block.h:227:5: required from 'Eigen::Block& Eigen::Block::operator=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::Product, 10000, 10000, 1, 32>&, const Eigen::Block, 10000, 1, 1, 32>&, 1>; MatrixType = Eigen::Matrix; int BlockRows = 10000; int BlockCols = 1; int PacketAccess = 1]' /usr/include/eigen2/Eigen/src/SVD/SVD.h:183:25: required from 'void Eigen::SVD::compute(const MatrixType&) [with MatrixType = Eigen::Matrix]' /usr/include/eigen2/Eigen/src/SVD/SVD.h:71:7: required from 'Eigen::SVD::SVD(const MatrixType&) [with MatrixType = Eigen::Matrix]' /usr/include/eigen2/Eigen/src/SVD/SVD.h:646:10: required from 'Eigen::SVD::type> Eigen::MatrixBase::svd() const [with Derived = Eigen::Matrix; typename Eigen::ei_plain_matrix_type::type = Eigen::Matrix]' /usr/src/RPM/BUILD/openbabel-2.4.1/src/charges/qeq.cpp:335:26: required from here /usr/include/eigen2/Eigen/src/Core/CacheFriendlyProduct.h:420:31: warning: enum constant in boolean context [-Wint-in-bool-context] int offset1 = (FirstAligned && alignmentStep==1?3:1); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /usr/include/eigen2/Eigen/src/Core/CacheFriendlyProduct.h:421:31: warning: enum constant in boolean context [-Wint-in-bool-context] int offset3 = (FirstAligned && alignmentStep==1?1:3); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 29%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/fillUC.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/fillUC.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/ops/fillUC.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 31%] Linking CXX shared module ../../lib/chemdrawcdx.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/chemdrawcdx.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/chemdrawcdx.so CMakeFiles/chemdrawcdx.dir/chemdrawcdx.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 32%] Built target chemdrawcdx make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/pdbqtformat.dir/build.make src/formats/CMakeFiles/pdbqtformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/pdbqtformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/pdbqtformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/pdbqtformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/pdbqtformat.dir/depend.internal". Scanning dependencies of target pdbqtformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/pdbqtformat.dir/build.make src/formats/CMakeFiles/pdbqtformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 29%] Building CXX object src/formats/CMakeFiles/thermoformat.dir/thermoformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dthermoformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/thermoformat.dir/thermoformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/thermoformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 29%] Building CXX object src/formats/CMakeFiles/cmlreactformat.dir/xml/xml.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dcmlreactformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/cmlreactformat.dir/xml/xml.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xml/xml.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 32%] Linking CXX shared module ../../lib/thermoformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/thermoformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/thermoformat.so CMakeFiles/thermoformat.dir/thermoformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 32%] Built target thermoformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/pcmodelformat.dir/build.make src/formats/CMakeFiles/pcmodelformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/pcmodelformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/pcmodelformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/pcmodelformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/pcmodelformat.dir/depend.internal". Scanning dependencies of target pcmodelformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/pcmodelformat.dir/build.make src/formats/CMakeFiles/pcmodelformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 32%] Linking CXX shared module ../../lib/cmlreactformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cmlreactformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/cmlreactformat.so CMakeFiles/cmlreactformat.dir/xml/cmlreactformat.cpp.o CMakeFiles/cmlreactformat.dir/xml/xml.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm -lxml2 ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 32%] Built target cmlreactformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/outformat.dir/build.make src/formats/CMakeFiles/outformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/outformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/outformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/outformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/outformat.dir/depend.internal". Scanning dependencies of target outformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/outformat.dir/build.make src/formats/CMakeFiles/outformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 29%] Building CXX object src/formats/CMakeFiles/pqrformat.dir/pqrformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dpqrformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/pqrformat.dir/pqrformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pqrformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pqrformat.cpp: In function 'double OpenBabel::parseAtomCharge(char*, OpenBabel::OBMol&)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pqrformat.cpp:196:13: warning: unused variable 'atom' [-Wunused-variable] OBAtom *atom = mol.GetAtom(mol.NumAtoms()); ^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pqrformat.cpp: In function 'double OpenBabel::parseAtomRadius(char*, OpenBabel::OBMol&)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pqrformat.cpp:211:13: warning: unused variable 'atom' [-Wunused-variable] OBAtom *atom = mol.GetAtom(mol.NumAtoms()); ^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pqrformat.cpp: In member function 'virtual bool OpenBabel::PQRFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pqrformat.cpp:501:52: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] snprintf(type_name, sizeof(type_name), " %-3s", tmp); ^~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6400, from /usr/include/c++/8/string:52, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/mol.h:35, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/obmolecformat.h:37, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pqrformat.cpp:16: /usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 5 and 11 bytes into a destination of size 10 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pqrformat.cpp:518:64: warning: '%-3s' directive output may be truncated writing between 3 and 15 bytes into a region of size 9 [-Wformat-truncation=] snprintf(padded_name, sizeof(padded_name), " %-3s", tmp); ^~~~~~~ ~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6400, from /usr/include/c++/8/string:52, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/mol.h:35, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/obmolecformat.h:37, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pqrformat.cpp:16: /usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 5 and 17 bytes into a destination of size 10 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 29%] Building CXX object src/formats/CMakeFiles/pointcloudformat.dir/pointcloudformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dpointcloudformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/pointcloudformat.dir/pointcloudformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pointcloudformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pointcloudformat.cpp: In member function 'virtual bool OpenBabel::PointCloudFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pointcloudformat.cpp:217:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] for( int j = 0; j < radius_mult_list.size(); j++ ) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 32%] Linking CXX shared module ../../lib/pqrformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pqrformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/pqrformat.so CMakeFiles/pqrformat.dir/pqrformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 32%] Built target pqrformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/msmsformat.dir/build.make src/formats/CMakeFiles/msmsformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/msmsformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/msmsformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/msmsformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/msmsformat.dir/depend.internal". Scanning dependencies of target msmsformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/msmsformat.dir/build.make src/formats/CMakeFiles/msmsformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 32%] Linking CXX shared module ../../lib/pointcloudformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pointcloudformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/pointcloudformat.so CMakeFiles/pointcloudformat.dir/pointcloudformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 32%] Built target pointcloudformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/moldenformat.dir/build.make src/formats/CMakeFiles/moldenformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/moldenformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/moldenformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/moldenformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/moldenformat.dir/depend.internal". Scanning dependencies of target moldenformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/moldenformat.dir/build.make src/formats/CMakeFiles/moldenformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 32%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/forcefield.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/forcefield.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/ops/forcefield.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/ops/forcefield.cpp: In member function 'virtual bool OpenBabel::OpMinimize::Do(OpenBabel::OBBase*, const char*, OpenBabel::OBOp::OpMap*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/ops/forcefield.cpp:235:10: warning: unused variable 'done' [-Wunused-variable] bool done = true; ^~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 32%] Building CXX object src/formats/CMakeFiles/outformat.dir/outformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Doutformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/outformat.dir/outformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/outformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 32%] Building CXX object src/formats/CMakeFiles/pcmodelformat.dir/pcmodelformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dpcmodelformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/pcmodelformat.dir/pcmodelformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pcmodelformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 32%] Linking CXX shared module ../../lib/outformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/outformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/outformat.so CMakeFiles/outformat.dir/outformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 32%] Built target outformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/mmcifformat.dir/build.make src/formats/CMakeFiles/mmcifformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/mmcifformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/mmcifformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/mmcifformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/mmcifformat.dir/depend.internal". Scanning dependencies of target mmcifformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/mmcifformat.dir/build.make src/formats/CMakeFiles/mmcifformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 32%] Linking CXX shared module ../../lib/pcmodelformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pcmodelformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/pcmodelformat.so CMakeFiles/pcmodelformat.dir/pcmodelformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 32%] Built target pcmodelformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/msiformat.dir/build.make src/formats/CMakeFiles/msiformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/msiformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/msiformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/msiformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/msiformat.dir/depend.internal". Scanning dependencies of target msiformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/msiformat.dir/build.make src/formats/CMakeFiles/msiformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 32%] Building CXX object src/formats/CMakeFiles/msmsformat.dir/msmsformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dmsmsformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/msmsformat.dir/msmsformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/msmsformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 32%] Linking CXX shared module ../../lib/msmsformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/msmsformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/msmsformat.so CMakeFiles/msmsformat.dir/msmsformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 32%] Built target msmsformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/lmpdatformat.dir/build.make src/formats/CMakeFiles/lmpdatformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/lmpdatformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/lmpdatformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/lmpdatformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/lmpdatformat.dir/depend.internal". Scanning dependencies of target lmpdatformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/lmpdatformat.dir/build.make src/formats/CMakeFiles/lmpdatformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 32%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/ops/gen3d.cpp In file included from /usr/include/eigen2/Eigen/Core:103, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/distgeom.h:32, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/ops/gen3d.cpp:23: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 32%] Building CXX object src/formats/CMakeFiles/msiformat.dir/msiformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dmsiformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/msiformat.dir/msiformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/msiformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/msiformat.cpp: In member function 'virtual bool OpenBabel::MSIFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/msiformat.cpp:71:17: warning: unused variable 'title' [-Wunused-variable] const char* title = pConv->GetTitle(); ^~~~~ In file included from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/mol.h:51, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/obmolecformat.h:37, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/msiformat.cpp:15: /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/generic.h:366:60: warning: 'sg' may be used uninitialized in this function [-Wmaybe-uninitialized] void SetSpaceGroup(const SpaceGroup* sg) { _spaceGroup = sg; } ~~~~~~~~~~~~^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/msiformat.cpp:106:23: note: 'sg' was declared here const SpaceGroup *sg; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/msiformat.cpp:189:28: warning: 'atom' may be used uninitialized in this function [-Wmaybe-uninitialized] atom->SetVector(atof(vs[3].c_str()), ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ atof(vs[4].c_str()), ~~~~~~~~~~~~~~~~~~~~ atof(vs[5].c_str())); ~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/msiformat.cpp:235:24: warning: 'bondOrder' may be used uninitialized in this function [-Wmaybe-uninitialized] mol.AddBond(startBondAtom - 1, endBondAtom - 1, bondOrder); ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/msiformat.cpp:235:56: warning: 'endBondAtom' may be used uninitialized in this function [-Wmaybe-uninitialized] mol.AddBond(startBondAtom - 1, endBondAtom - 1, bondOrder); ~~~~~~~~~~~~^~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/msiformat.cpp:235:39: warning: 'startBondAtom' may be used uninitialized in this function [-Wmaybe-uninitialized] mol.AddBond(startBondAtom - 1, endBondAtom - 1, bondOrder); ~~~~~~~~~~~~~~^~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 33%] Linking CXX shared module ../../lib/msiformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/msiformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/msiformat.so CMakeFiles/msiformat.dir/msiformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 32%] Building CXX object src/formats/CMakeFiles/moldenformat.dir/moldenformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dmoldenformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/moldenformat.dir/moldenformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/moldenformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 33%] Built target msiformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/mmodformat.dir/build.make src/formats/CMakeFiles/mmodformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/mmodformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/mmodformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/mmodformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/mmodformat.dir/depend.internal". Scanning dependencies of target mmodformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/mmodformat.dir/build.make src/formats/CMakeFiles/mmodformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 33%] Linking CXX shared module ../../lib/moldenformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/moldenformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/moldenformat.so CMakeFiles/moldenformat.dir/moldenformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 33%] Built target moldenformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/groformat.dir/build.make src/formats/CMakeFiles/groformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/groformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/groformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/groformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/groformat.dir/depend.internal". Scanning dependencies of target groformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/groformat.dir/build.make src/formats/CMakeFiles/groformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 32%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_charges_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/charges/qtpie.cpp In file included from /usr/include/eigen2/Eigen/Core:103, from /usr/include/eigen2/Eigen/LU:4, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/charges/qtpie.h:29, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/charges/qtpie.cpp:21: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/SVD:23, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/charges/qtpie.h:30, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/charges/qtpie.cpp:21: /usr/include/eigen2/Eigen/src/SVD/SVD.h: In instantiation of 'bool Eigen::SVD::solve(const Eigen::MatrixBase&, ResultType*) const [with OtherDerived = Eigen::Matrix; ResultType = Eigen::Matrix; MatrixType = Eigen::Matrix]': /usr/src/RPM/BUILD/openbabel-2.4.1/src/charges/qtpie.cpp:384:39: required from here /usr/include/eigen2/Eigen/src/SVD/SVD.h:528:13: warning: unused variable 'rows' [-Wunused-variable] const int rows = m_matU.rows(); ^~~~ In file included from /usr/include/eigen2/Eigen/Core:155, from /usr/include/eigen2/Eigen/LU:4, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/charges/qtpie.h:29, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/charges/qtpie.cpp:21: /usr/include/eigen2/Eigen/src/Core/CacheFriendlyProduct.h: In instantiation of 'void Eigen::ei_cache_friendly_product_colmajor_times_vector(int, const Scalar*, int, const RhsType&, Scalar*) [with Scalar = double; RhsType = Eigen::Matrix]': /usr/include/eigen2/Eigen/src/Core/SolveTriangular.h:189:56: required from 'static void Eigen::ei_solve_triangular_selector::run(const Lhs&, Rhs&) [with Lhs = Eigen::Flagged, 10000, 10000, 1, 32>, 2304, 0>; Rhs = Eigen::Block, 10000, 10000, 1, 32>; int UpLo = 2048]' /usr/include/eigen2/Eigen/src/Core/SolveTriangular.h:248:81: required from 'void Eigen::MatrixBase::solveTriangularInPlace(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Block, 10000, 10000, 1, 32>; Derived = Eigen::Flagged, 10000, 10000, 1, 32>, 2304, 0>]' /usr/include/eigen2/Eigen/src/LU/LU.h:499:3: required from 'bool Eigen::LU::solve(const Eigen::MatrixBase&, ResultType*) const [with OtherDerived = Eigen::Matrix; ResultType = Eigen::Matrix; MatrixType = Eigen::Matrix]' /usr/src/RPM/BUILD/openbabel-2.4.1/src/charges/qtpie.cpp:362:39: required from here /usr/include/eigen2/Eigen/src/Core/CacheFriendlyProduct.h:420:31: warning: enum constant in boolean context [-Wint-in-bool-context] int offset1 = (FirstAligned && alignmentStep==1?3:1); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /usr/include/eigen2/Eigen/src/Core/CacheFriendlyProduct.h:421:31: warning: enum constant in boolean context [-Wint-in-bool-context] int offset3 = (FirstAligned && alignmentStep==1?1:3); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /usr/include/eigen2/Eigen/src/Core/CacheFriendlyProduct.h: In instantiation of 'void Eigen::ei_cache_friendly_product_rowmajor_times_vector(const Scalar*, int, const Scalar*, int, ResType&) [with Scalar = double; ResType = Eigen::Matrix]': /usr/include/eigen2/Eigen/src/Core/Product.h:679:52: required from 'static void Eigen::ei_cache_friendly_product_selector::run(DestDerived&, const ProductType&) [with DestDerived = Eigen::Matrix; ProductType = Eigen::Product >&, const Eigen::Block, 10000, 1, 1, 32>&, 1>; int LhsRows = 10000; int RhsOrder = 0; int RhsAccess = 32]' /usr/include/eigen2/Eigen/src/Core/Product.h:761:84: required from 'Derived& Eigen::MatrixBase::lazyAssign(const Eigen::Product&) [with Lhs = const Eigen::Transpose >&; Rhs = const Eigen::Block, 10000, 1, 1, 32>&; Derived = Eigen::Matrix]' /usr/include/eigen2/Eigen/src/Core/Assign.h:447:123: required from 'static Derived& Eigen::ei_assign_selector::run(Derived&, const OtherDerived&) [with Derived = Eigen::Matrix; OtherDerived = Eigen::Product >&, const Eigen::Block, 10000, 1, 1, 32>&, 1>]' /usr/include/eigen2/Eigen/src/Core/Matrix.h:554:64: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::_set_noalias(const Eigen::MatrixBase&) [with OtherDerived = Eigen::Product >&, const Eigen::Block, 10000, 1, 1, 32>&, 1>; _Scalar = double; int _Rows = 10000; int _Cols = 1; int _Options = 2; int _MaxRows = 10000; int _MaxCols = 1]' /usr/include/eigen2/Eigen/src/Core/Matrix.h:408:7: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::MatrixBase&) [with OtherDerived = Eigen::Product >&, const Eigen::Block, 10000, 1, 1, 32>&, 1>; _Scalar = double; int _Rows = 10000; int _Cols = 1; int _Options = 2; int _MaxRows = 10000; int _MaxCols = 1]' /usr/include/eigen2/Eigen/src/SVD/SVD.h:534:53: required from 'bool Eigen::SVD::solve(const Eigen::MatrixBase&, ResultType*) const [with OtherDerived = Eigen::Matrix; ResultType = Eigen::Matrix; MatrixType = Eigen::Matrix]' /usr/src/RPM/BUILD/openbabel-2.4.1/src/charges/qtpie.cpp:384:39: required from here /usr/include/eigen2/Eigen/src/Core/CacheFriendlyProduct.h:609:31: warning: enum constant in boolean context [-Wint-in-bool-context] int offset1 = (FirstAligned && alignmentStep==1?3:1); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /usr/include/eigen2/Eigen/src/Core/CacheFriendlyProduct.h:610:31: warning: enum constant in boolean context [-Wint-in-bool-context] int offset3 = (FirstAligned && alignmentStep==1?1:3); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /usr/include/eigen2/Eigen/src/Core/CacheFriendlyProduct.h: In instantiation of 'void Eigen::ei_cache_friendly_product_colmajor_times_vector(int, const Scalar*, int, const RhsType&, Scalar*) [with Scalar = double; RhsType = Eigen::Matrix]': /usr/include/eigen2/Eigen/src/Core/Product.h:590:52: required from 'static void Eigen::ei_cache_friendly_product_selector::run(DestDerived&, const ProductType&) [with DestDerived = Eigen::Matrix; ProductType = Eigen::Product&, const Eigen::Matrix&, 1>; int LhsRows = 10000; int RhsOrder = 0; int RhsAccess = 32]' /usr/include/eigen2/Eigen/src/Core/Product.h:761:84: required from 'Derived& Eigen::MatrixBase::lazyAssign(const Eigen::Product&) [with Lhs = const Eigen::Matrix&; Rhs = const Eigen::Matrix&; Derived = Eigen::Matrix]' /usr/include/eigen2/Eigen/src/Core/Assign.h:447:123: required from 'static Derived& Eigen::ei_assign_selector::run(Derived&, const OtherDerived&) [with Derived = Eigen::Matrix; OtherDerived = Eigen::Product&, const Eigen::Matrix&, 1>]' /usr/include/eigen2/Eigen/src/Core/Matrix.h:554:64: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::_set_noalias(const Eigen::MatrixBase&) [with OtherDerived = Eigen::Product&, const Eigen::Matrix&, 1>; _Scalar = double; int _Rows = 10000; int _Cols = 1; int _Options = 2; int _MaxRows = 10000; int _MaxCols = 1]' /usr/include/eigen2/Eigen/src/Core/Matrix.h:408:7: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::MatrixBase&) [with OtherDerived = Eigen::Product&, const Eigen::Matrix&, 1>; _Scalar = double; int _Rows = 10000; int _Cols = 1; int _Options = 2; int _MaxRows = 10000; int _MaxCols = 1]' /usr/include/eigen2/Eigen/src/Core/CwiseBinaryOp.h:90:47: required from 'Eigen::CwiseBinaryOp::CwiseBinaryOp(const Lhs&, const Rhs&, const BinaryOp&) [with BinaryOp = Eigen::ei_scalar_difference_op; Lhs = Eigen::Product&, const Eigen::Matrix&, 1>; Rhs = Eigen::Matrix]' /usr/include/eigen2/Eigen/src/Core/CwiseBinaryOp.h:151:10: required from 'const Eigen::CwiseBinaryOp::Scalar>, Derived, OtherDerived> Eigen::MatrixBase::operator-(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Matrix; Derived = Eigen::Product&, const Eigen::Matrix&, 1>; typename Eigen::ei_traits::Scalar = double]' /usr/src/RPM/BUILD/openbabel-2.4.1/src/charges/qtpie.cpp:366:28: required from here /usr/include/eigen2/Eigen/src/Core/CacheFriendlyProduct.h:420:31: warning: enum constant in boolean context [-Wint-in-bool-context] int offset1 = (FirstAligned && alignmentStep==1?3:1); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /usr/include/eigen2/Eigen/src/Core/CacheFriendlyProduct.h:421:31: warning: enum constant in boolean context [-Wint-in-bool-context] int offset3 = (FirstAligned && alignmentStep==1?1:3); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /usr/include/eigen2/Eigen/src/Core/CacheFriendlyProduct.h: In instantiation of 'void Eigen::ei_cache_friendly_product_colmajor_times_vector(int, const Scalar*, int, const RhsType&, Scalar*) [with Scalar = double; RhsType = Eigen::Block, 10000, 10000, 1, 32>]': /usr/include/eigen2/Eigen/src/Core/Product.h:590:52: required from 'static void Eigen::ei_cache_friendly_product_selector::run(DestDerived&, const ProductType&) [with DestDerived = Eigen::Matrix; ProductType = Eigen::Product, 10000, 10000, 1, 32>&, const Eigen::Block, 10000, 10000, 1, 32>&, 1>; int LhsRows = 10000; int RhsOrder = 0; int RhsAccess = 32]' /usr/include/eigen2/Eigen/src/Core/Product.h:761:84: required from 'Derived& Eigen::MatrixBase::lazyAssign(const Eigen::Product&) [with Lhs = const Eigen::Block, 10000, 10000, 1, 32>&; Rhs = const Eigen::Block, 10000, 10000, 1, 32>&; Derived = Eigen::Matrix]' /usr/include/eigen2/Eigen/src/Core/Assign.h:447:123: required from 'static Derived& Eigen::ei_assign_selector::run(Derived&, const OtherDerived&) [with Derived = Eigen::Matrix; OtherDerived = Eigen::Product, 10000, 10000, 1, 32>&, const Eigen::Block, 10000, 10000, 1, 32>&, 1>]' /usr/include/eigen2/Eigen/src/Core/Matrix.h:554:64: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::_set_noalias(const Eigen::MatrixBase&) [with OtherDerived = Eigen::Product, 10000, 10000, 1, 32>&, const Eigen::Block, 10000, 10000, 1, 32>&, 1>; _Scalar = double; int _Rows = 10000; int _Cols = 1; int _Options = 2; int _MaxRows = 10000; int _MaxCols = 1]' /usr/include/eigen2/Eigen/src/Core/Matrix.h:408:7: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::MatrixBase&) [with OtherDerived = Eigen::Product, 10000, 10000, 1, 32>&, const Eigen::Block, 10000, 10000, 1, 32>&, 1>; _Scalar = double; int _Rows = 10000; int _Cols = 1; int _Options = 2; int _MaxRows = 10000; int _MaxCols = 1]' /usr/include/eigen2/Eigen/src/Core/CwiseBinaryOp.h:90:47: required from 'Eigen::CwiseBinaryOp::CwiseBinaryOp(const Lhs&, const Rhs&, const BinaryOp&) [with BinaryOp = Eigen::ei_scalar_difference_op; Lhs = Eigen::Block, 10000, 10000, 0, 32>; Rhs = Eigen::Product, 10000, 10000, 1, 32>&, const Eigen::Block, 10000, 10000, 1, 32>&, 1>]' /usr/include/eigen2/Eigen/src/Core/CwiseBinaryOp.h:151:10: required from 'const Eigen::CwiseBinaryOp::Scalar>, Derived, OtherDerived> Eigen::MatrixBase::operator-(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Product, 10000, 10000, 1, 32>&, const Eigen::Block, 10000, 10000, 1, 32>&, 1>; Derived = Eigen::Block, 10000, 10000, 0, 32>; typename Eigen::ei_traits::Scalar = double]' /usr/include/eigen2/Eigen/src/Core/MapBase.h:188:41: required from 'Derived& Eigen::MapBase::operator-=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::Product, 10000, 10000, 1, 32>&, const Eigen::Block, 10000, 10000, 1, 32>&, 1>; Derived = Eigen::Block, 10000, 10000, 1, 32>]' /usr/include/eigen2/Eigen/src/Core/Block.h:227:5: required from 'Eigen::Block& Eigen::Block::operator-=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::Product, 10000, 10000, 1, 32>&, const Eigen::Block, 10000, 10000, 1, 32>&, 1>; MatrixType = Eigen::Matrix; int BlockRows = 10000; int BlockCols = 10000; int PacketAccess = 1]' /usr/include/eigen2/Eigen/src/LU/LU.h:505:7: required from 'bool Eigen::LU::solve(const Eigen::MatrixBase&, ResultType*) const [with OtherDerived = Eigen::Matrix; ResultType = Eigen::Matrix; MatrixType = Eigen::Matrix]' /usr/src/RPM/BUILD/openbabel-2.4.1/src/charges/qtpie.cpp:362:39: required from here /usr/include/eigen2/Eigen/src/Core/CacheFriendlyProduct.h:420:31: warning: enum constant in boolean context [-Wint-in-bool-context] int offset1 = (FirstAligned && alignmentStep==1?3:1); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /usr/include/eigen2/Eigen/src/Core/CacheFriendlyProduct.h:421:31: warning: enum constant in boolean context [-Wint-in-bool-context] int offset3 = (FirstAligned && alignmentStep==1?1:3); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /usr/include/eigen2/Eigen/src/Core/CacheFriendlyProduct.h: In instantiation of 'void Eigen::ei_cache_friendly_product_colmajor_times_vector(int, const Scalar*, int, const RhsType&, Scalar*) [with Scalar = double; RhsType = Eigen::Block, 10000, 1, 1, 32>]': /usr/include/eigen2/Eigen/src/Core/Product.h:590:52: required from 'static void Eigen::ei_cache_friendly_product_selector::run(DestDerived&, const ProductType&) [with DestDerived = Eigen::Matrix; ProductType = Eigen::Product, 10000, 10000, 1, 32>&, const Eigen::Block, 10000, 1, 1, 32>&, 1>; int LhsRows = 10000; int RhsOrder = 0; int RhsAccess = 32]' /usr/include/eigen2/Eigen/src/Core/Product.h:761:84: required from 'Derived& Eigen::MatrixBase::lazyAssign(const Eigen::Product&) [with Lhs = const Eigen::Block, 10000, 10000, 1, 32>&; Rhs = const Eigen::Block, 10000, 1, 1, 32>&; Derived = Eigen::Matrix]' /usr/include/eigen2/Eigen/src/Core/Assign.h:447:123: required from 'static Derived& Eigen::ei_assign_selector::run(Derived&, const OtherDerived&) [with Derived = Eigen::Matrix; OtherDerived = Eigen::Product, 10000, 10000, 1, 32>&, const Eigen::Block, 10000, 1, 1, 32>&, 1>]' /usr/include/eigen2/Eigen/src/Core/Matrix.h:554:64: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::_set_noalias(const Eigen::MatrixBase&) [with OtherDerived = Eigen::Product, 10000, 10000, 1, 32>&, const Eigen::Block, 10000, 1, 1, 32>&, 1>; _Scalar = double; int _Rows = 10000; int _Cols = 1; int _Options = 2; int _MaxRows = 10000; int _MaxCols = 1]' /usr/include/eigen2/Eigen/src/Core/Matrix.h:408:7: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::MatrixBase&) [with OtherDerived = Eigen::Product, 10000, 10000, 1, 32>&, const Eigen::Block, 10000, 1, 1, 32>&, 1>; _Scalar = double; int _Rows = 10000; int _Cols = 1; int _Options = 2; int _MaxRows = 10000; int _MaxCols = 1]' /usr/include/eigen2/Eigen/src/Core/MatrixBase.h:492:41: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/include/eigen2/Eigen/src/Core/MapBase.h:177:29: required from 'Derived& Eigen::MapBase::operator=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::Product, 10000, 10000, 1, 32>&, const Eigen::Block, 10000, 1, 1, 32>&, 1>; Derived = Eigen::Block, 10000, 1, 1, 32>]' /usr/include/eigen2/Eigen/src/Core/Block.h:227:5: required from 'Eigen::Block& Eigen::Block::operator=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::Product, 10000, 10000, 1, 32>&, const Eigen::Block, 10000, 1, 1, 32>&, 1>; MatrixType = Eigen::Matrix; int BlockRows = 10000; int BlockCols = 1; int PacketAccess = 1]' /usr/include/eigen2/Eigen/src/SVD/SVD.h:183:25: required from 'void Eigen::SVD::compute(const MatrixType&) [with MatrixType = Eigen::Matrix]' /usr/include/eigen2/Eigen/src/SVD/SVD.h:71:7: required from 'Eigen::SVD::SVD(const MatrixType&) [with MatrixType = Eigen::Matrix]' /usr/include/eigen2/Eigen/src/SVD/SVD.h:646:10: required from 'Eigen::SVD::type> Eigen::MatrixBase::svd() const [with Derived = Eigen::Matrix; typename Eigen::ei_plain_matrix_type::type = Eigen::Matrix]' /usr/src/RPM/BUILD/openbabel-2.4.1/src/charges/qtpie.cpp:384:26: required from here /usr/include/eigen2/Eigen/src/Core/CacheFriendlyProduct.h:420:31: warning: enum constant in boolean context [-Wint-in-bool-context] int offset1 = (FirstAligned && alignmentStep==1?3:1); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /usr/include/eigen2/Eigen/src/Core/CacheFriendlyProduct.h:421:31: warning: enum constant in boolean context [-Wint-in-bool-context] int offset3 = (FirstAligned && alignmentStep==1?1:3); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 33%] Linking CXX shared module ../lib/plugin_charges.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_charges.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../lib/plugin_charges.so CMakeFiles/plugin_charges.dir/charges/eem.cpp.o CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o CMakeFiles/plugin_charges.dir/charges/none.cpp.o CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o CMakeFiles/plugin_charges.dir/charges/eqeq.cpp.o CMakeFiles/plugin_charges.dir/charges/qeq.cpp.o CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o -lm -ldl -lz ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 33%] Built target plugin_charges make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/molproformat.dir/build.make src/formats/CMakeFiles/molproformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/molproformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/molproformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/molproformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/molproformat.dir/depend.internal". Scanning dependencies of target molproformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/molproformat.dir/build.make src/formats/CMakeFiles/molproformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 32%] Building CXX object src/formats/CMakeFiles/pdbqtformat.dir/pdbqtformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dpdbqtformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/pdbqtformat.dir/pdbqtformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pdbqtformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pdbqtformat.cpp: In function 'bool OpenBabel::OutputTree(OpenBabel::OBConversion*, OpenBabel::OBMol&, std::ostream&, std::map&, unsigned int, bool, bool)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pdbqtformat.cpp:580:20: warning: unused variable 'child' [-Wunused-variable] unsigned int child=i; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pdbqtformat.cpp: In function 'bool OpenBabel::Separate_preserve_charges(OpenBabel::OBMol&, std::vector&)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pdbqtformat.cpp:794:9: warning: unused variable 'fragments' [-Wunused-variable] int fragments = 0; ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pdbqtformat.cpp: At global scope: /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pdbqtformat.cpp:747:16: warning: 'unsigned int OpenBabel::AtomsSoFar(const std::map&, unsigned int)' defined but not used [-Wunused-function] unsigned int AtomsSoFar(const map & tree, unsigned int depth) ^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pdbqtformat.cpp: In function 'void OpenBabel::OutputAtom(OpenBabel::OBAtom*, std::ostream&, unsigned int)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pdbqtformat.cpp:334:46: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] snprintf(type_name, sizeof(type_name), " %-3s", tmp); ^~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6400, from /usr/include/c++/8/string:52, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/mol.h:35, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/obmolecformat.h:37, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pdbqtformat.cpp:24: /usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 5 and 11 bytes into a destination of size 10 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pdbqtformat.cpp:351:54: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] snprintf(padded_name, sizeof(padded_name), " %-3s", tmp); ^~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6400, from /usr/include/c++/8/string:52, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/mol.h:35, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/obmolecformat.h:37, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pdbqtformat.cpp:24: /usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 5 and 11 bytes into a destination of size 10 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 33%] Linking CXX shared module ../../lib/pdbqtformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdbqtformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/pdbqtformat.so CMakeFiles/pdbqtformat.dir/pdbqtformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 33%] Built target pdbqtformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/stlformat.dir/build.make src/formats/CMakeFiles/stlformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/stlformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/stlformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/stlformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/stlformat.dir/depend.internal". Scanning dependencies of target stlformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/stlformat.dir/build.make src/formats/CMakeFiles/stlformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 32%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/largest.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/largest.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/ops/largest.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 33%] Building CXX object src/formats/CMakeFiles/mmodformat.dir/mmodformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dmmodformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/mmodformat.dir/mmodformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mmodformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 35%] Linking CXX shared module ../../lib/mmodformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mmodformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/mmodformat.so CMakeFiles/mmodformat.dir/mmodformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 35%] Built target mmodformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/jaguarformat.dir/build.make src/formats/CMakeFiles/jaguarformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/jaguarformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/jaguarformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/jaguarformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/jaguarformat.dir/depend.internal". Scanning dependencies of target jaguarformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/jaguarformat.dir/build.make src/formats/CMakeFiles/jaguarformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 32%] Building CXX object src/formats/CMakeFiles/lmpdatformat.dir/lmpdatformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dlmpdatformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/lmpdatformat.dir/lmpdatformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/lmpdatformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/lmpdatformat.cpp: In member function 'virtual bool OpenBabel::LMPDATFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/lmpdatformat.cpp:271:13: warning: unused variable 'length' [-Wunused-variable] double length=cmax-cmin; ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/lmpdatformat.cpp:361:11: warning: unused variable 'atomid' [-Wunused-variable] int atomid=5; ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/lmpdatformat.cpp:362:14: warning: unused variable 'charge' [-Wunused-variable] double charge=0.5; ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/lmpdatformat.cpp:528:10: warning: '%11s' directive output may be truncated writing between 11 and 32767 bytes into a region of size between 32695 and 32736 [-Wformat-truncation=] "%-4d %4d %4d %4d %4d %4d # %11s\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/lmpdatformat.cpp:535:10: DihedralString); ~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6400, from /usr/include/c++/8/string:52, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/mol.h:35, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/obmolecformat.h:37, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/lmpdatformat.cpp:15: /usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 45 and 32842 bytes into a destination of size 32768 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/lmpdatformat.cpp:510:10: warning: '%11s' directive output may be truncated writing between 11 and 32767 bytes into a region of size between 32695 and 32736 [-Wformat-truncation=] "%-4d %4d %4d %4d %4d %4d # %11s\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/lmpdatformat.cpp:517:10: DihedralString); ~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6400, from /usr/include/c++/8/string:52, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/mol.h:35, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/obmolecformat.h:37, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/lmpdatformat.cpp:15: /usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 45 and 32842 bytes into a destination of size 32768 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/lmpdatformat.cpp:468:9: warning: '%8s' directive output may be truncated writing between 8 and 32767 bytes into a region of size between 32707 and 32741 [-Wformat-truncation=] "%-4d %4d %4d %4d %4d # %8s\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/lmpdatformat.cpp:474:9: AngleString); ~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6400, from /usr/include/c++/8/string:52, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/mol.h:35, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/obmolecformat.h:37, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/lmpdatformat.cpp:15: /usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 37 and 32830 bytes into a destination of size 32768 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/lmpdatformat.cpp:452:9: warning: '%8s' directive output may be truncated writing between 8 and 32767 bytes into a region of size between 32707 and 32741 [-Wformat-truncation=] "%-4d %4d %4d %4d %4d # %8s\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/lmpdatformat.cpp:458:9: AngleString); ~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6400, from /usr/include/c++/8/string:52, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/mol.h:35, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/obmolecformat.h:37, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/lmpdatformat.cpp:15: /usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 37 and 32830 bytes into a destination of size 32768 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/lmpdatformat.cpp:415:9: warning: '%5s' directive output may be truncated writing between 5 and 32767 bytes into a region of size between 32719 and 32746 [-Wformat-truncation=] "%-4d %4d %4d %4d # %5s\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/lmpdatformat.cpp:420:9: BondString); ~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6400, from /usr/include/c++/8/string:52, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/mol.h:35, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/obmolecformat.h:37, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/lmpdatformat.cpp:15: /usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 29 and 32818 bytes into a destination of size 32768 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/lmpdatformat.cpp:401:9: warning: '%5s' directive output may be truncated writing between 5 and 32767 bytes into a region of size between 32719 and 32746 [-Wformat-truncation=] "%-4d %4d %4d %4d # %5s\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/lmpdatformat.cpp:406:9: BondString); ~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6400, from /usr/include/c++/8/string:52, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/mol.h:35, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/obmolecformat.h:37, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/lmpdatformat.cpp:15: /usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 29 and 32818 bytes into a destination of size 32768 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 36%] Linking CXX shared module ../../lib/lmpdatformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/lmpdatformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/lmpdatformat.so CMakeFiles/lmpdatformat.dir/lmpdatformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 36%] Built target lmpdatformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/alchemyformat.dir/build.make src/formats/CMakeFiles/alchemyformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 32%] Building CXX object src/formats/CMakeFiles/mmcifformat.dir/mmcifformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dmmcifformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/mmcifformat.dir/mmcifformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mmcifformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/alchemyformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/alchemyformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/alchemyformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/alchemyformat.dir/depend.internal". Scanning dependencies of target alchemyformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/alchemyformat.dir/build.make src/formats/CMakeFiles/alchemyformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 36%] Linking CXX shared module ../../lib/mmcifformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mmcifformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/mmcifformat.so CMakeFiles/mmcifformat.dir/mmcifformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 36%] Built target mmcifformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/gausszmatformat.dir/build.make src/formats/CMakeFiles/gausszmatformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 34%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/loader.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/loader.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/ops/loader.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/gausszmatformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/gausszmatformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/gausszmatformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/gausszmatformat.dir/depend.internal". Scanning dependencies of target gausszmatformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/gausszmatformat.dir/build.make src/formats/CMakeFiles/gausszmatformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 33%] Building CXX object src/formats/CMakeFiles/stlformat.dir/stlformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dstlformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/stlformat.dir/stlformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/stlformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/stlformat.cpp: In function 'void OpenBabel::map_sphere(std::vector&, OpenBabel::vector3, double, uint16_t)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/stlformat.cpp:149:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] for( int i=0 ; i < points.size()-2; i++ ) { ~~^~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 36%] Linking CXX shared module ../../lib/stlformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/stlformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/stlformat.so CMakeFiles/stlformat.dir/stlformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 36%] Built target stlformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/gamessformat.dir/build.make src/formats/CMakeFiles/gamessformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/gamessformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/gamessformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/gamessformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/gamessformat.dir/depend.internal". Scanning dependencies of target gamessformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/gamessformat.dir/build.make src/formats/CMakeFiles/gamessformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 33%] Building CXX object src/formats/CMakeFiles/groformat.dir/groformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dgroformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/groformat.dir/groformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/groformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/groformat.cpp: In member function 'virtual bool OpenBabel::GROFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/groformat.cpp:273:19: warning: 'res' may be used uninitialized in this function [-Wmaybe-uninitialized] res->AddAtom(atom); ~~~~~~~~~~~~^~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 37%] Linking CXX shared module ../../lib/groformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/groformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/groformat.so CMakeFiles/groformat.dir/groformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 37%] Built target groformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/daltonformat.dir/build.make src/formats/CMakeFiles/daltonformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/daltonformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/daltonformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/daltonformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/daltonformat.dir/depend.internal". Scanning dependencies of target daltonformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/daltonformat.dir/build.make src/formats/CMakeFiles/daltonformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 33%] Building CXX object src/formats/CMakeFiles/molproformat.dir/molproformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dmolproformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/molproformat.dir/molproformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/molproformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 35%] Building CXX object src/formats/CMakeFiles/jaguarformat.dir/jaguarformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Djaguarformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/jaguarformat.dir/jaguarformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/jaguarformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 38%] Linking CXX shared module ../../lib/molproformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/molproformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/molproformat.so CMakeFiles/molproformat.dir/molproformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 38%] Built target molproformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/hinformat.dir/build.make src/formats/CMakeFiles/hinformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/hinformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/hinformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/hinformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/hinformat.dir/depend.internal". Scanning dependencies of target hinformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/hinformat.dir/build.make src/formats/CMakeFiles/hinformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 38%] Linking CXX shared module ../../lib/jaguarformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/jaguarformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/jaguarformat.so CMakeFiles/jaguarformat.dir/jaguarformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 38%] Built target jaguarformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/balstformat.dir/build.make src/formats/CMakeFiles/balstformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/balstformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/balstformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/balstformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/balstformat.dir/depend.internal". Scanning dependencies of target balstformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/balstformat.dir/build.make src/formats/CMakeFiles/balstformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 36%] Building CXX object src/formats/CMakeFiles/alchemyformat.dir/alchemyformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dalchemyformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/alchemyformat.dir/alchemyformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/alchemyformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 30%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.cpp: In member function 'virtual bool OpenBabel::OBForceFieldMMFF94::SetupCalculations()': /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.cpp:2790:32: warning: variable 'bondtype1' set but not used [-Wunused-but-set-variable] int angletype, strbndtype, bondtype1, bondtype2; ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.cpp:2790:43: warning: variable 'bondtype2' set but not used [-Wunused-but-set-variable] int angletype, strbndtype, bondtype1, bondtype2; ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_Bond() [with bool = true]': /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.h:288:41: required from here /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.cpp:140:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] for (int i = 0; i < _bondcalculations.size(); ++i) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_Bond() [with bool = false]': /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.h:288:59: required from here /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.cpp:140:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_Angle() [with bool = true]': /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.h:294:42: required from here /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.cpp:255:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] for (int i = 0; i < _anglecalculations.size(); ++i) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_Angle() [with bool = false]': /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.h:294:61: required from here /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.cpp:255:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_StrBnd() [with bool = true]': /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.h:300:43: required from here /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.cpp:368:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] for (int i = 0; i < _strbndcalculations.size(); ++i) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_StrBnd() [with bool = false]': /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.h:300:63: required from here /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.cpp:368:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_Torsion() [with bool = true]': /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.h:306:44: required from here /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.cpp:504:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] for (int i = 0; i < _torsioncalculations.size(); ++i) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_Torsion() [with bool = false]': /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.h:306:65: required from here /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.cpp:504:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_OOP() [with bool = true]': /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.h:312:40: required from here /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.cpp:602:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] for (int i = 0; i < _oopcalculations.size(); ++i) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_OOP() [with bool = false]': /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.h:312:57: required from here /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.cpp:602:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_VDW() [with bool = true]': /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.h:318:40: required from here /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.cpp:699:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] for (int i = 0; i < _vdwcalculations.size(); ++i) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_VDW() [with bool = false]': /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.h:318:57: required from here /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.cpp:699:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_Electrostatic() [with bool = true]': /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.h:324:50: required from here /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.cpp:785:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] for (int i = 0; i < _electrostaticcalculations.size(); ++i) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.cpp: In instantiation of 'double OpenBabel::OBForceFieldMMFF94::E_Electrostatic() [with bool = false]': /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.h:324:77: required from here /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.cpp:785:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.cpp: In member function 'bool OpenBabel::OBForceFieldMMFF94::PerceiveAromatic()': /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.cpp:1443:30: warning: 'first_rj' may be used uninitialized in this function [-Wmaybe-uninitialized] ringbond = _mol.GetBond(first_rj, index); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefieldmmff94.cpp:1443:30: warning: 'index' may be used uninitialized in this function [-Wmaybe-uninitialized] make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 38%] Linking CXX shared module ../../lib/alchemyformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/alchemyformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/alchemyformat.so CMakeFiles/alchemyformat.dir/alchemyformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 38%] Built target alchemyformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/chemtoolformat.dir/build.make src/formats/CMakeFiles/chemtoolformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/chemtoolformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/chemtoolformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/chemtoolformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/chemtoolformat.dir/depend.internal". Scanning dependencies of target chemtoolformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/chemtoolformat.dir/build.make src/formats/CMakeFiles/chemtoolformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 36%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opsplit.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/opsplit.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/ops/opsplit.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/ops/opsplit.cpp: In member function 'virtual bool OpenBabel::OpSplit::Do(OpenBabel::OBBase*, const char*, OpenBabel::OBOp::OpMap*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/ops/opsplit.cpp:92:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if(!pConv) ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/ops/opsplit.cpp:95:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if(pConv->IsFirstInput()) ^~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 36%] Building CXX object src/formats/CMakeFiles/gausszmatformat.dir/gausszmatformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dgausszmatformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/gausszmatformat.dir/gausszmatformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/gausszmatformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 37%] Building CXX object src/formats/CMakeFiles/daltonformat.dir/daltonformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Ddaltonformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/daltonformat.dir/daltonformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/daltonformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/daltonformat.cpp: In member function 'virtual bool OpenBabel::DALTONInputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/daltonformat.cpp:142:9: warning: variable 'atomcount' set but not used [-Wunused-but-set-variable] int atomcount = 0; // for each atom type ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/daltonformat.cpp: In member function 'virtual bool OpenBabel::DALTONInputFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/daltonformat.cpp:306:31: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] if(atom->GetAtomicNum() != atomtype) ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/daltonformat.cpp:326:31: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] if(atom->GetAtomicNum() != atomtype) ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 39%] Linking CXX shared module ../../lib/gausszmatformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gausszmatformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/gausszmatformat.so CMakeFiles/gausszmatformat.dir/gausszmatformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 40%] Built target gausszmatformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/opendxformat.dir/build.make src/formats/CMakeFiles/opendxformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/opendxformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/opendxformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/opendxformat.dir/depend.internal". 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Scanning dependencies of target opendxformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/opendxformat.dir/build.make src/formats/CMakeFiles/opendxformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 40%] Linking CXX shared module ../../lib/daltonformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/daltonformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/daltonformat.so CMakeFiles/daltonformat.dir/daltonformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 40%] Built target daltonformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/adfformat.dir/build.make src/formats/CMakeFiles/adfformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/adfformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/adfformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/adfformat.dir/depend.internal". 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Scanning dependencies of target adfformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/adfformat.dir/build.make src/formats/CMakeFiles/adfformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 38%] Building CXX object src/formats/CMakeFiles/hinformat.dir/hinformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dhinformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/hinformat.dir/hinformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/hinformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 40%] Linking CXX shared module ../../lib/hinformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/hinformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/hinformat.so CMakeFiles/hinformat.dir/hinformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 40%] Built target hinformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/pngformat.dir/build.make src/formats/CMakeFiles/pngformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/pngformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/pngformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/pngformat.dir/depend.internal". 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Scanning dependencies of target fhiaimsformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/fhiaimsformat.dir/build.make src/formats/CMakeFiles/fhiaimsformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 39%] Building CXX object src/formats/CMakeFiles/chemtoolformat.dir/chemtoolformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dchemtoolformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/chemtoolformat.dir/chemtoolformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/chemtoolformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 41%] Linking CXX shared module ../../lib/chemtoolformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/chemtoolformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/chemtoolformat.so CMakeFiles/chemtoolformat.dir/chemtoolformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 41%] Built target chemtoolformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/boxformat.dir/build.make src/formats/CMakeFiles/boxformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/boxformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/boxformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/boxformat.dir/depend.internal". 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Scanning dependencies of target boxformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/boxformat.dir/build.make src/formats/CMakeFiles/boxformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 41%] Building CXX object src/formats/CMakeFiles/fhiaimsformat.dir/fhiaimsformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dfhiaimsformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC 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Scanning dependencies of target viewmolformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/viewmolformat.dir/build.make src/formats/CMakeFiles/viewmolformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 42%] Linking CXX shared module ../../lib/pngformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pngformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/pngformat.so CMakeFiles/pngformat.dir/pngformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 42%] Built target pngformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/abinitformat.dir/build.make src/formats/CMakeFiles/abinitformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/abinitformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/abinitformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/abinitformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/abinitformat.dir/depend.internal". Scanning dependencies of target abinitformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/abinitformat.dir/build.make src/formats/CMakeFiles/abinitformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 41%] Building CXX object src/formats/CMakeFiles/boxformat.dir/boxformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dboxformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/boxformat.dir/boxformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/boxformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 44%] Linking CXX shared module ../../lib/boxformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/boxformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/boxformat.so CMakeFiles/boxformat.dir/boxformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 44%] Built target boxformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/gamessukformat.dir/build.make src/formats/CMakeFiles/gamessukformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/gamessukformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/gamessukformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/gamessukformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/gamessukformat.dir/depend.internal". Scanning dependencies of target gamessukformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/gamessukformat.dir/build.make src/formats/CMakeFiles/gamessukformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 37%] Building CXX object src/formats/CMakeFiles/gamessformat.dir/gamessformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dgamessformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/gamessformat.dir/gamessformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/gamessformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/gamessformat.cpp: In member function 'virtual bool OpenBabel::GAMESSOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/gamessformat.cpp:227:9: warning: variable 'ndummyatoms' set but not used [-Wunused-but-set-variable] int ndummyatoms = 0; ^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/gamessformat.cpp:520:58: warning: 'lowFreqModesEnd' may be used uninitialized in this function [-Wmaybe-uninitialized] if (numIntens < lowFreqModesBegin || numIntens > lowFreqModesEnd) ~~~~~~~~~~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/gamessformat.cpp:520:25: warning: 'lowFreqModesBegin' may be used uninitialized in this function [-Wmaybe-uninitialized] if (numIntens < lowFreqModesBegin || numIntens > lowFreqModesEnd) ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 44%] Linking CXX shared module ../../lib/gamessformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gamessformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/gamessformat.so CMakeFiles/gamessformat.dir/gamessformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 44%] Built target gamessformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/posformat.dir/build.make src/formats/CMakeFiles/posformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/posformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/posformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/posformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/posformat.dir/depend.internal". Scanning dependencies of target posformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/posformat.dir/build.make src/formats/CMakeFiles/posformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 42%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/partialcharges.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/partialcharges.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/ops/partialcharges.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 42%] Building CXX object src/formats/CMakeFiles/viewmolformat.dir/viewmolformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dviewmolformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/viewmolformat.dir/viewmolformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/viewmolformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 42%] Building CXX object src/formats/CMakeFiles/cssrformat.dir/cssrformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dcssrformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/cssrformat.dir/cssrformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/cssrformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 40%] Building CXX object src/formats/CMakeFiles/adfformat.dir/adfformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dadfformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/adfformat.dir/adfformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/adfformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/adfformat.cpp: In member function 'bool OpenBabel::OBT41Format::ReadASCII(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/adfformat.cpp:590:7: warning: this 'while' clause does not guard... [-Wmisleading-indentation] while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/adfformat.cpp:590:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while' while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; ^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/adfformat.cpp:603:7: warning: this 'while' clause does not guard... [-Wmisleading-indentation] while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/adfformat.cpp:603:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while' while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; ^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/adfformat.cpp:625:7: warning: this 'while' clause does not guard... [-Wmisleading-indentation] while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/adfformat.cpp:625:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while' while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; ^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/adfformat.cpp:640:7: warning: this 'while' clause does not guard... [-Wmisleading-indentation] while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/adfformat.cpp:640:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while' while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; ^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/adfformat.cpp:655:7: warning: this 'while' clause does not guard... [-Wmisleading-indentation] while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/adfformat.cpp:655:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while' while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; ^~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 45%] Linking CXX shared module ../../lib/viewmolformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/viewmolformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/viewmolformat.so CMakeFiles/viewmolformat.dir/viewmolformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 45%] Built target viewmolformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/lpmdformat.dir/build.make src/formats/CMakeFiles/lpmdformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 45%] Linking CXX shared module ../../lib/cssrformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cssrformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/cssrformat.so CMakeFiles/cssrformat.dir/cssrformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 45%] Built target cssrformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/aoforceformat.dir/build.make src/formats/CMakeFiles/aoforceformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/lpmdformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/lpmdformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/lpmdformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/lpmdformat.dir/depend.internal". Scanning dependencies of target lpmdformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/lpmdformat.dir/build.make src/formats/CMakeFiles/lpmdformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 45%] Linking CXX shared module ../../lib/adfformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/adfformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/adfformat.so CMakeFiles/adfformat.dir/adfformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 45%] Built target adfformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/confabreport.dir/build.make src/formats/CMakeFiles/confabreport.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/aoforceformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/aoforceformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/aoforceformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/aoforceformat.dir/depend.internal". Scanning dependencies of target aoforceformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/aoforceformat.dir/build.make src/formats/CMakeFiles/aoforceformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/confabreport.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/confabreport.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/confabreport.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/confabreport.dir/depend.internal". Scanning dependencies of target confabreport make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/confabreport.dir/build.make src/formats/CMakeFiles/confabreport.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 43%] Building CXX object src/formats/CMakeFiles/abinitformat.dir/abinitformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dabinitformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/abinitformat.dir/abinitformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/abinitformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/abinitformat.cpp: In member function 'virtual bool OpenBabel::ABINITFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/abinitformat.cpp:91:12: warning: variable 'acell' set but not used [-Wunused-but-set-variable] double acell[3]; // scale of lattice vectors ^~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 46%] Linking CXX shared module ../../lib/abinitformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/abinitformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/abinitformat.so CMakeFiles/abinitformat.dir/abinitformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 46%] Built target abinitformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/dmolformat.dir/build.make src/formats/CMakeFiles/dmolformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/dmolformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/dmolformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/dmolformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/dmolformat.dir/depend.internal". Scanning dependencies of target dmolformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/dmolformat.dir/build.make src/formats/CMakeFiles/dmolformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 44%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/ops/readconformers.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 44%] Building CXX object src/formats/CMakeFiles/posformat.dir/posformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dposformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/posformat.dir/posformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/posformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 48%] Linking CXX shared module ../../lib/posformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/posformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/posformat.so CMakeFiles/posformat.dir/posformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 48%] Built target posformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/pdbformat.dir/build.make src/formats/CMakeFiles/pdbformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/pdbformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/pdbformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/pdbformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/pdbformat.dir/depend.internal". Scanning dependencies of target pdbformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/pdbformat.dir/build.make src/formats/CMakeFiles/pdbformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 38%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefielduff.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefielduff.cpp: In instantiation of 'void OpenBabel::OBFFVDWCalculationUFF::Compute() [with bool = true]': /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefielduff.cpp:470:7: required from 'double OpenBabel::OBForceFieldUFF::E_VDW() [with bool = true]' /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefielduff.h:192:38: required from here /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefielduff.cpp:423:14: warning: unused variable 'ab' [-Wunused-variable] double ab[3]; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefielduff.cpp: In instantiation of 'void OpenBabel::OBFFVDWCalculationUFF::Compute() [with bool = false]': /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefielduff.cpp:470:7: required from 'double OpenBabel::OBForceFieldUFF::E_VDW() [with bool = false]' /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefielduff.h:192:55: required from here /usr/src/RPM/BUILD/openbabel-2.4.1/src/forcefields/forcefielduff.cpp:423:14: warning: unused variable 'ab' [-Wunused-variable] make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 49%] Linking CXX shared module ../lib/plugin_forcefields.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_forcefields.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../lib/plugin_forcefields.so CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o -lm -ldl -lz ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 49%] Built target plugin_forcefields make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/acesformat.dir/build.make src/formats/CMakeFiles/acesformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/acesformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/acesformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/acesformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/acesformat.dir/depend.internal". Scanning dependencies of target acesformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/acesformat.dir/build.make src/formats/CMakeFiles/acesformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 46%] Building CXX object src/formats/CMakeFiles/confabreport.dir/confabreport.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dconfabreport_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/confabreport.dir/confabreport.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/confabreport.cpp In file included from /usr/include/eigen2/Eigen/Core:103, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/math/align.h:26, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/confabreport.cpp:35: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/confabreport.cpp: In member function 'void OpenBabel::ConfabReport::WriteOutput(std::ostream&)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/confabreport.cpp:128:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] for (int i=1; i < binvals.size(); i++) ~~^~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/confabreport.cpp:133:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] for (int i=1; i < cumbins.size(); i++) ~~^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 46%] Building CXX object src/formats/CMakeFiles/dmolformat.dir/dmolformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Ddmolformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/dmolformat.dir/dmolformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/dmolformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 45%] Building CXX object src/formats/CMakeFiles/aoforceformat.dir/aoforceformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Daoforceformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/aoforceformat.dir/aoforceformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/aoforceformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 49%] Linking CXX shared module ../../lib/confabreport.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/confabreport.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/confabreport.so CMakeFiles/confabreport.dir/confabreport.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 49%] Built target confabreport make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/mol2format.dir/build.make src/formats/CMakeFiles/mol2format.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/mol2format.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/mol2format.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/mol2format.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/mol2format.dir/depend.internal". Scanning dependencies of target mol2format make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/mol2format.dir/build.make src/formats/CMakeFiles/mol2format.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 49%] Linking CXX shared module ../../lib/dmolformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/dmolformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/dmolformat.so CMakeFiles/dmolformat.dir/dmolformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 49%] Built target dmolformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/nulformat.dir/build.make src/formats/CMakeFiles/nulformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/nulformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/nulformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/nulformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/nulformat.dir/depend.internal". Scanning dependencies of target nulformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/nulformat.dir/build.make src/formats/CMakeFiles/nulformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 49%] Linking CXX shared module ../../lib/aoforceformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/aoforceformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/aoforceformat.so CMakeFiles/aoforceformat.dir/aoforceformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 49%] Built target aoforceformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/mdlformat.dir/build.make src/formats/CMakeFiles/mdlformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/mdlformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/mdlformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/mdlformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/mdlformat.dir/depend.internal". Scanning dependencies of target mdlformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/mdlformat.dir/build.make src/formats/CMakeFiles/mdlformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 49%] Building CXX object src/formats/CMakeFiles/nulformat.dir/nulformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dnulformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/nulformat.dir/nulformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/nulformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 50%] Linking CXX shared module ../../lib/nulformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/nulformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/nulformat.so CMakeFiles/nulformat.dir/nulformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 50%] Built target nulformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/pubchemjsonformat.dir/build.make src/formats/CMakeFiles/pubchemjsonformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/pubchemjsonformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/pubchemjsonformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/pubchemjsonformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/pubchemjsonformat.dir/depend.internal". Scanning dependencies of target pubchemjsonformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/pubchemjsonformat.dir/build.make src/formats/CMakeFiles/pubchemjsonformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 44%] Building CXX object src/formats/CMakeFiles/gamessukformat.dir/gamessukformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dgamessukformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/gamessukformat.dir/gamessukformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/gamessukformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/gamessukformat.cpp: In member function 'bool OpenBabel::GAMESSUKOutputFormat::ReadInitialCartesian(OpenBabel::OBMol&, std::istream&)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/gamessukformat.cpp:779:10: warning: variable 'ok' set but not used [-Wunused-but-set-variable] bool ok=false; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/gamessukformat.cpp: In member function 'bool OpenBabel::GAMESSUKOutputFormat::ReadOptGeomXyz1(OpenBabel::OBMol&, std::istream&)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/gamessukformat.cpp:845:12: warning: variable 'ok' set but not used [-Wunused-but-set-variable] bool ok=false; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/gamessukformat.cpp: In member function 'bool OpenBabel::GAMESSUKOutputFormat::ReadOptGeomXyz2(OpenBabel::OBMol&, std::istream&)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/gamessukformat.cpp:892:12: warning: variable 'ok' set but not used [-Wunused-but-set-variable] bool ok=false; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/gamessukformat.cpp: In member function 'virtual bool OpenBabel::GAMESSUKOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/gamessukformat.cpp:1207:12: warning: variable 'ok' set but not used [-Wunused-but-set-variable] bool ok; ^~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 49%] Building CXX object src/formats/CMakeFiles/acesformat.dir/acesformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dacesformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/acesformat.dir/acesformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/acesformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 45%] Building CXX object src/formats/CMakeFiles/lpmdformat.dir/lpmdformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dlpmdformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/lpmdformat.dir/lpmdformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/lpmdformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/lpmdformat.cpp: In member function 'virtual bool OpenBabel::LpmdFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/lpmdformat.cpp:190:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] if(int(headers.size()-1)!=tokens.size()) ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/lpmdformat.cpp:204:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] for(int i=1 ; i < headers.size() ; ++i) //the first element is HDR ~~^~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/lpmdformat.cpp:237:11: warning: unused variable 'FX' [-Wunused-variable] double FX = AX/mass; double FY = AY/mass; double FZ = AZ/mass; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/lpmdformat.cpp:237:32: warning: unused variable 'FY' [-Wunused-variable] double FX = AX/mass; double FY = AY/mass; double FZ = AZ/mass; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/lpmdformat.cpp:237:53: warning: unused variable 'FZ' [-Wunused-variable] double FX = AX/mass; double FY = AY/mass; double FZ = AZ/mass; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/lpmdformat.cpp: In member function 'virtual bool OpenBabel::LpmdFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/lpmdformat.cpp:360:18: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] for(int i=0; i < mol.NumAtoms() ; ++i) ~~^~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/lpmdformat.cpp:376:15: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] for(int i=0;iGetBeginAtom()->GetIdx() == idx1 || bond2->GetEndAtom()->GetIdx() == idx1) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mol2format.cpp:391:87: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] if ((bond2->GetBeginAtom()->GetIdx() == idx1 || bond2->GetEndAtom()->GetIdx() == idx1) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mol2format.cpp:394:51: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] else if ((bond2->GetBeginAtom()->GetIdx() == idx2 || bond2->GetEndAtom()->GetIdx() == idx2) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mol2format.cpp:394:92: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] else if ((bond2->GetBeginAtom()->GetIdx() == idx2 || bond2->GetEndAtom()->GetIdx() == idx2) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mol2format.cpp:476:99: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] if (n_h_bonded < min_n_h_bonded || (n_h_bonded == min_n_h_bonded && partner->GetIdx() < min_idx)) { ~~~~~~~~~~~~~~~~~~^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mol2format.cpp:499:35: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] if (partner->GetIdx() == min_idx) { ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mol2format.cpp: In member function 'virtual int OpenBabel::MOL2Format::SkipObjects(int, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mol2format.cpp:727:10: warning: unused variable 'ch' [-Wunused-variable] char ch = ifs.peek(); ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mol2format.cpp: In member function 'virtual bool OpenBabel::MOL2Format::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mol2format.cpp:677:35: warning: '%-6s' directive output may be truncated writing between 6 and 32767 bytes into a region of size between 32756 and 32760 [-Wformat-truncation=] snprintf(buffer,BUFF_SIZE,"%7d %-6s %9.4f %9.4f %9.4f %-5s %3s %-8s %9.4f", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ atom->GetIdx(),label, ~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6400, from /usr/include/c++/8/string:52, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/mol.h:35, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/obmolecformat.h:37, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mol2format.cpp:17: /usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output 77 or more bytes (assuming 98361) into a destination of size 32768 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mol2format.cpp:702:36: warning: '%2s' directive output may be truncated writing between 2 and 32767 bytes into a region of size between 32730 and 32747 [-Wformat-truncation=] snprintf(buffer, BUFF_SIZE,"%6d %5d %5d %2s", ^~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mol2format.cpp:704:18: label); ~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6400, from /usr/include/c++/8/string:52, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/mol.h:35, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/obmolecformat.h:37, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mol2format.cpp:17: /usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 24 and 32806 bytes into a destination of size 32768 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 50%] Building CXX object src/formats/CMakeFiles/titleformat.dir/titleformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dtitleformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/titleformat.dir/titleformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/titleformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 50%] Linking CXX shared module ../../lib/pdbformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdbformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/pdbformat.so CMakeFiles/pdbformat.dir/pdbformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 50%] Built target pdbformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/copyformat.dir/build.make src/formats/CMakeFiles/copyformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 50%] Linking CXX shared module ../../lib/mol2format.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mol2format.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/mol2format.so CMakeFiles/mol2format.dir/mol2format.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/copyformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/copyformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/copyformat.dir/depend.internal". 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Scanning dependencies of target copyformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/copyformat.dir/build.make src/formats/CMakeFiles/copyformat.dir/build make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 50%] Built target mol2format make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/gausscubeformat.dir/build.make src/formats/CMakeFiles/gausscubeformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/gausscubeformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/gausscubeformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/gausscubeformat.dir/depend.internal". 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Scanning dependencies of target mpqcformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/mpqcformat.dir/build.make src/formats/CMakeFiles/mpqcformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 50%] Building CXX object src/formats/CMakeFiles/copyformat.dir/copyformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dcopyformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/copyformat.dir/copyformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/copyformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 50%] Linking CXX shared module ../../lib/copyformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/copyformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/copyformat.so CMakeFiles/copyformat.dir/copyformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 50%] Built target copyformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/mdffformat.dir/build.make src/formats/CMakeFiles/mdffformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/mdffformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/mdffformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/mdffformat.dir/depend.internal". 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Scanning dependencies of target mdffformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/mdffformat.dir/build.make src/formats/CMakeFiles/mdffformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 50%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/ops/opisomorph.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/ops/opisomorph.cpp: In member function 'virtual bool OpenBabel::OpNewS::Do(OpenBabel::OBBase*, const char*, OpenBabel::OBOp::OpMap*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/ops/opisomorph.cpp:300:28: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] if(pmol->NumHvyAtoms() != nPatternAtoms) ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 50%] Building CXX object src/formats/CMakeFiles/cacaoformat.dir/cacaoformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dcacaoformat_EXPORTS 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-O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/cacaoformat.so CMakeFiles/cacaoformat.dir/cacaoformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 50%] Building CXX object src/formats/CMakeFiles/mpqcformat.dir/mpqcformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dmpqcformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/mpqcformat.dir/mpqcformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mpqcformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 50%] Built target cacaoformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/freefracformat.dir/build.make src/formats/CMakeFiles/freefracformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats 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Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/freefracformat.dir/depend.internal". Scanning dependencies of target freefracformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/freefracformat.dir/build.make src/formats/CMakeFiles/freefracformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 50%] Building CXX object src/formats/CMakeFiles/pubchemjsonformat.dir/json/pubchemjsonformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dpubchemjsonformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/pubchemjsonformat.dir/json/pubchemjsonformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/json/pubchemjsonformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/json/pubchemjsonformat.cpp: In member function 'virtual bool OpenBabel::PubChemJSONFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/json/pubchemjsonformat.cpp:108:41: warning: comparison of integer expressions of different signedness: 'Json::Value::ArrayIndex' {aka 'unsigned int'} and 'int' [-Wsign-compare] if (inRoot["PC_Compounds"].size() > currentMolIndex) { ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/json/pubchemjsonformat.cpp:119:42: warning: comparison of integer expressions of different signedness: 'Json::Value::ArrayIndex' {aka 'unsigned int'} and 'int' [-Wsign-compare] if (inRoot["PC_Substances"].size() > currentMolIndex) { ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 50%] Linking CXX shared module ../../lib/mpqcformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mpqcformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/mpqcformat.so CMakeFiles/mpqcformat.dir/mpqcformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 50%] Built target mpqcformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/smileyformat.dir/build.make src/formats/CMakeFiles/smileyformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/smileyformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/smileyformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/smileyformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/smileyformat.dir/depend.internal". Scanning dependencies of target smileyformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/smileyformat.dir/build.make src/formats/CMakeFiles/smileyformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 50%] Building CXX object src/formats/CMakeFiles/freefracformat.dir/freefracformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dfreefracformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/freefracformat.dir/freefracformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/freefracformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 50%] Linking CXX shared module ../../lib/freefracformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/freefracformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/freefracformat.so CMakeFiles/freefracformat.dir/freefracformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 50%] Built target freefracformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/MNAformat.dir/build.make src/formats/CMakeFiles/MNAformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/MNAformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/MNAformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/MNAformat.dir/depend.internal". 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Scanning dependencies of target MNAformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/MNAformat.dir/build.make src/formats/CMakeFiles/MNAformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 50%] Building CXX object src/formats/CMakeFiles/dlpolyformat.dir/dlpolyformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Ddlpolyformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/dlpolyformat.dir/dlpolyformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/dlpolyformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/dlpolyformat.cpp: In member function 'bool OpenBabel::DlpolyInputReader::ParseUnitCell(std::istream&, OpenBabel::OBMol&)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/dlpolyformat.cpp:147:10: warning: variable 'ok' set but not used [-Wunused-but-set-variable] bool ok; ^~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 50%] Linking CXX shared module ../../lib/dlpolyformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/dlpolyformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/dlpolyformat.so CMakeFiles/dlpolyformat.dir/dlpolyformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 50%] Built target dlpolyformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/painterformat.dir/build.make src/formats/CMakeFiles/painterformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/painterformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/painterformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/painterformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/painterformat.dir/depend.internal". Scanning dependencies of target painterformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/painterformat.dir/build.make src/formats/CMakeFiles/painterformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 50%] Building CXX object src/formats/CMakeFiles/mdffformat.dir/mdffformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dmdffformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/mdffformat.dir/mdffformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdffformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdffformat.cpp: In member function 'virtual bool OpenBabel::MDFFFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdffformat.cpp:241:30: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] for(int i = 0; i < atom_t_prop.size(); i++) ~~^~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdffformat.cpp:262:33: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] for(unsigned int j = 0; j < atom_t_prop[i].num_of_atoms; j++) ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdffformat.cpp: In member function 'bool OpenBabel::aindx::operator<(const OpenBabel::aindx&) const': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdffformat.cpp:321:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] for(int i = 0; i < vs.size(); i++) ~~^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdffformat.cpp: In member function 'virtual bool OpenBabel::MDFFFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdffformat.cpp:380:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] for(int i = 0; i < vs.size(); i++) ~~^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdffformat.cpp:435:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, unsigned int> >::size_type' {aka 'unsigned int'} [-Wsign-compare] for (int i = 0; i < atypes_def.size(); i++) ~~^~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdffformat.cpp:442:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, unsigned int> >::size_type' {aka 'unsigned int'} [-Wsign-compare] for (int i = 0; i < atypes_def.size(); i++) ~~^~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdffformat.cpp:492:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, unsigned int> >::size_type' {aka 'unsigned int'} [-Wsign-compare] for(int j = 0; j < atypes_def.size(); j++) ~~^~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 50%] Building CXX object src/formats/CMakeFiles/MNAformat.dir/MNAformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMNAformat_EXPORTS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/MNAformat.dir/MNAformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/MNAformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 51%] Linking CXX shared module ../../lib/mdffformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdffformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/mdffformat.so CMakeFiles/mdffformat.dir/mdffformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 51%] Linking CXX shared module ../../lib/MNAformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/MNAformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/MNAformat.so CMakeFiles/MNAformat.dir/MNAformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 51%] Built target mdffformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/molreport.dir/build.make src/formats/CMakeFiles/molreport.dir/depend make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 51%] Built target MNAformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/xyzformat.dir/build.make src/formats/CMakeFiles/xyzformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/molreport.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/molreport.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/molreport.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/molreport.dir/depend.internal". Scanning dependencies of target molreport make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/molreport.dir/build.make src/formats/CMakeFiles/molreport.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/xyzformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/xyzformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/xyzformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/xyzformat.dir/depend.internal". Scanning dependencies of target xyzformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/xyzformat.dir/build.make src/formats/CMakeFiles/xyzformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 50%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/ops/ophighlight.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 50%] Building CXX object src/formats/CMakeFiles/pubchemjsonformat.dir/json/jsoncpp.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dpubchemjsonformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/pubchemjsonformat.dir/json/jsoncpp.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/json/jsoncpp.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 50%] Building CXX object src/formats/CMakeFiles/smileyformat.dir/smileyformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dsmileyformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/smileyformat.dir/smileyformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp: In member function 'void OpenBabel::OpenBabelCallback::setChiral(int, Smiley::Chirality, const std::vector&)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'NotChiral' not handled in switch [-Wswitch] switch (chirality) { ^ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'TH1' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'TH2' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'AL1' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'AL2' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'SP1' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'SP2' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'SP3' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'TB1' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'TB2' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'TB3' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'TB4' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'TB5' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'TB6' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'TB7' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'TB8' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'TB9' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'TB10' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'TB11' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'TB12' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'TB13' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'TB14' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'TB15' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'TB16' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'TB17' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'TB18' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'TB19' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'TB20' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'OH1' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'OH2' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'OH3' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'OH4' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'OH5' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'OH6' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'OH7' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'OH8' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'OH9' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'OH10' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'OH11' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'OH12' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'OH13' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'OH14' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'OH15' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'OH16' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'OH17' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'OH18' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'OH19' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'OH20' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'OH21' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'OH22' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'OH23' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'OH24' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'OH25' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'OH26' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'OH27' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'OH28' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'OH29' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:153:14: warning: enumeration value 'OH30' not handled in switch [-Wswitch] In file included from /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:20: /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smiley.h: In instantiation of 'void Smiley::Parser::processStereochemistry() [with Callback = OpenBabel::OpenBabelCallback]': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smiley.h:2707:9: required from 'void Smiley::Parser::parse(const string&) [with Callback = OpenBabel::OpenBabelCallback; std::__cxx11::string = std::__cxx11::basic_string]' /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:365:26: required from here /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smiley.h:2642:43: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] if (m_chiralInfo[i].nbrs.size() != expectedValence && m_exceptions & InvalidChiralValence) /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smiley.h: In instantiation of 'Smiley::Parser::RingBondInfo::RingBondInfo(int, int, bool, bool, bool, std::size_t) [with Callback = OpenBabel::OpenBabelCallback; std::size_t = unsigned int]': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smiley.h:2409:41: required from 'void Smiley::Parser::processRingBond(int, std::size_t) [with Callback = OpenBabel::OpenBabelCallback; std::size_t = unsigned int]' /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smiley.h:2429:11: required from 'void Smiley::Parser::parseRingBond() [with Callback = OpenBabel::OpenBabelCallback]' /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smiley.h:2507:13: required from 'void Smiley::Parser::parseChain() [with Callback = OpenBabel::OpenBabelCallback]' /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smiley.h:2698:9: required from 'void Smiley::Parser::parse(const string&) [with Callback = OpenBabel::OpenBabelCallback; std::__cxx11::string = std::__cxx11::basic_string]' /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smileyformat.cpp:365:26: required from here /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smiley.h:986:14: warning: 'Smiley::Parser::RingBondInfo::isExplicit' will be initialized after [-Wreorder] bool isExplicit; ^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smiley.h:981:21: warning: 'std::size_t Smiley::Parser::RingBondInfo::pos' [-Wreorder] std::size_t pos; ^~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smiley.h:974:9: warning: when initialized here [-Wreorder] RingBondInfo(int number_, int order_, bool isUp_, bool isDown_, ^~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 54%] Linking CXX shared module ../../lib/smileyformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/smileyformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/smileyformat.so CMakeFiles/smileyformat.dir/smileyformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 51%] Building CXX object src/formats/CMakeFiles/painterformat.dir/painterformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dpainterformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/painterformat.dir/painterformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/painterformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/painterformat.cpp: In member function 'virtual bool OpenBabel::PainterFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/painterformat.cpp:113:12: warning: unused variable 'ofs' [-Wunused-variable] ostream& ofs = *pConv->GetOutStream(); ^~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 54%] Built target smileyformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/crystal09format.dir/build.make src/formats/CMakeFiles/crystal09format.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/crystal09format.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/crystal09format.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/crystal09format.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/crystal09format.dir/depend.internal". Scanning dependencies of target crystal09format make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/crystal09format.dir/build.make src/formats/CMakeFiles/crystal09format.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 54%] Building CXX object src/formats/CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dpainterformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/depict/commandpainter.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 53%] Building CXX object src/formats/CMakeFiles/pubchemjsonformat.dir/json/customwriter.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dpubchemjsonformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/pubchemjsonformat.dir/json/customwriter.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/json/customwriter.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/json/customwriter.cpp: In member function 'void Json::CustomWriter::writeValue(const Json::Value&, std::__cxx11::string&, bool)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/json/customwriter.cpp:83:34: warning: comparison of integer expressions of different signedness: 'std::__cxx11::basic_string::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] if (valLine.length() > maxWidth_) ~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/json/customwriter.cpp:96:36: warning: comparison of integer expressions of different signedness: 'int' and 'Json::Value::ArrayIndex' {aka 'unsigned int'} [-Wsign-compare] for ( int index =0; index < value.size(); ++index ) ~~~~~~^~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/json/customwriter.cpp:104:24: warning: comparison of integer expressions of different signedness: 'int' and 'Json::Value::ArrayIndex' {aka 'unsigned int'} [-Wsign-compare] if ( index < value.size()-1 ) ~~~~~~^~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/json/customwriter.cpp:123:34: warning: comparison of integer expressions of different signedness: 'std::__cxx11::basic_string::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] if (valLine.length() > maxWidth_) ~~~~~~~~~~~~~~~~~^~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 51%] Building CXX object src/formats/CMakeFiles/molreport.dir/molreport.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dmolreport_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/molreport.dir/molreport.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/molreport.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 54%] Linking CXX shared module ../../lib/painterformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/painterformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/painterformat.so CMakeFiles/painterformat.dir/painterformat.cpp.o CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 54%] Built target painterformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/PQSformat.dir/build.make src/formats/CMakeFiles/PQSformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 54%] Linking CXX shared module ../../lib/pubchemjsonformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pubchemjsonformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/pubchemjsonformat.so CMakeFiles/pubchemjsonformat.dir/json/pubchemjsonformat.cpp.o CMakeFiles/pubchemjsonformat.dir/json/jsoncpp.cpp.o CMakeFiles/pubchemjsonformat.dir/json/customwriter.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 54%] Linking CXX shared module ../../lib/molreport.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/molreport.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/molreport.so CMakeFiles/molreport.dir/molreport.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/PQSformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/PQSformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/PQSformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/PQSformat.dir/depend.internal". Scanning dependencies of target PQSformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/PQSformat.dir/build.make src/formats/CMakeFiles/PQSformat.dir/build make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 54%] Built target pubchemjsonformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 54%] Built target molreport make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/mpdformat.dir/build.make src/formats/CMakeFiles/mpdformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/mpdformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/mpdformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/mpdformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/mpdformat.dir/depend.internal". Scanning dependencies of target mpdformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/mpdformat.dir/build.make src/formats/CMakeFiles/mpdformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 53%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/xout.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/xout.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/ops/xout.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 52%] Building CXX object src/formats/CMakeFiles/xyzformat.dir/xyzformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dxyzformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/xyzformat.dir/xyzformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xyzformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 56%] Linking CXX shared module ../../lib/xyzformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/xyzformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/xyzformat.so CMakeFiles/xyzformat.dir/xyzformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 56%] Built target xyzformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/svgformat.dir/build.make src/formats/CMakeFiles/svgformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/svgformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/svgformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/svgformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/svgformat.dir/depend.internal". Scanning dependencies of target svgformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/svgformat.dir/build.make src/formats/CMakeFiles/svgformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 50%] Building CXX object src/formats/CMakeFiles/gausscubeformat.dir/gausscubeformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dgausscubeformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/gausscubeformat.dir/gausscubeformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/gausscubeformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/gausscubeformat.cpp: In member function 'virtual bool OpenBabel::OBGaussianCubeFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/gausscubeformat.cpp:425:25: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] while (vgd.size() < nCubes) ~~~~~~~~~~~^~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/gausscubeformat.cpp:472:26: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] while (values.size() < n*nCubes) ~~~~~~~~~~~~~~^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/gausscubeformat.cpp:107:17: warning: unused variable 'title' [-Wunused-variable] const char* title = pConv->GetTitle(); ^~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 56%] Linking CXX shared module ../../lib/gausscubeformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gausscubeformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/gausscubeformat.so CMakeFiles/gausscubeformat.dir/gausscubeformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 56%] Built target gausscubeformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/povrayformat.dir/build.make src/formats/CMakeFiles/povrayformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 50%] Building CXX object src/formats/CMakeFiles/mdlformat.dir/mdlformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dmdlformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/mdlformat.dir/mdlformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlformat.cpp:38: /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h: In function 'unsigned int MDLValence(unsigned int, int, unsigned int)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:51:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (val <= 5) return 5; break; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:51:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (val <= 5) return 5; break; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:64:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (val <= 5) return 5; break; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:64:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (val <= 5) return 5; break; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:77:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (val <= 5) return 5; break; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:77:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (val <= 5) return 5; break; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:90:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (val <= 5) return 5; break; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:90:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (val <= 5) return 5; break; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:103:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (val <= 5) return 5; break; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:103:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (val <= 5) return 5; break; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:116:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (val <= 7) return 7; break; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:116:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (val <= 7) return 7; break; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:119:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (val <= 6) return 6; break; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:119:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (val <= 6) return 6; break; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:121:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (val <= 5) return 5; break; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:121:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (val <= 5) return 5; break; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:134:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (val <= 7) return 7; break; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:134:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (val <= 7) return 7; break; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:137:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (val <= 6) return 6; break; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:137:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (val <= 6) return 6; break; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:139:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (val <= 5) return 5; break; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:139:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (val <= 5) return 5; break; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:152:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (val <= 7) return 7; break; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:152:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (val <= 7) return 7; break; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:155:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (val <= 6) return 6; break; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:155:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (val <= 6) return 6; break; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:157:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (val <= 5) return 5; break; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:157:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (val <= 5) return 5; break; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:170:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (val <= 7) return 7; break; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:170:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (val <= 7) return 7; break; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:173:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (val <= 6) return 6; break; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:173:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (val <= 6) return 6; break; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:175:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (val <= 5) return 5; break; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:175:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (val <= 5) return 5; break; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:188:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (val <= 7) return 7; break; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:188:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (val <= 7) return 7; break; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:191:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (val <= 6) return 6; break; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:191:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (val <= 6) return 6; break; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:193:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (val <= 5) return 5; break; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:193:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (val <= 5) return 5; break; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:206:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (val <= 7) return 7; break; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:206:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (val <= 7) return 7; break; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:209:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (val <= 6) return 6; break; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:209:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (val <= 6) return 6; break; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:211:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (val <= 5) return 5; break; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:211:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (val <= 5) return 5; break; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:223:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (val <= 7) return 7; break; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:223:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (val <= 7) return 7; break; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:226:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (val <= 6) return 6; break; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:226:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (val <= 6) return 6; break; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:228:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (val <= 5) return 5; break; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:228:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (val <= 5) return 5; break; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:240:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (val <= 7) return 7; break; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:240:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (val <= 7) return 7; break; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:243:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (val <= 6) return 6; break; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:243:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (val <= 6) return 6; break; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:245:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (val <= 5) return 5; break; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:245:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (val <= 5) return 5; break; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:257:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (val <= 7) return 7; break; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:257:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (val <= 7) return 7; break; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:260:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (val <= 6) return 6; break; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:260:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (val <= 6) return 6; break; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:262:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (val <= 5) return 5; break; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:262:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (val <= 5) return 5; break; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:274:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (val <= 7) return 7; break; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:274:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (val <= 7) return 7; break; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:277:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (val <= 6) return 6; break; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:277:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (val <= 6) return 6; break; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:279:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (val <= 5) return 5; break; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:279:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (val <= 5) return 5; break; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:291:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (val <= 7) return 7; break; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:291:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (val <= 7) return 7; break; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:294:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (val <= 6) return 6; break; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:294:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (val <= 6) return 6; break; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:296:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (val <= 5) return 5; break; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:296:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (val <= 5) return 5; break; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:298:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (val <= 4) return 4; break; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:298:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (val <= 4) return 4; break; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:310:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (val <= 7) return 7; break; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:310:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (val <= 7) return 7; break; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:313:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (val <= 6) return 6; break; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:313:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (val <= 6) return 6; break; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:315:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (val <= 5) return 5; break; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:315:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (val <= 5) return 5; break; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:317:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (val <= 4) return 4; break; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:317:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (val <= 4) return 4; break; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:329:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (val <= 7) return 7; break; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:329:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (val <= 7) return 7; break; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:332:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (val <= 6) return 6; break; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:332:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (val <= 6) return 6; break; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:334:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (val <= 5) return 5; break; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:334:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (val <= 5) return 5; break; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:336:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (val <= 4) return 4; break; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:336:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (val <= 4) return 4; break; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:348:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (val <= 7) return 7; break; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:348:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (val <= 7) return 7; break; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:351:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (val <= 6) return 6; break; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:351:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (val <= 6) return 6; break; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:353:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (val <= 5) return 5; break; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:353:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (val <= 5) return 5; break; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:355:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (val <= 4) return 4; break; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:355:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (val <= 4) return 4; break; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:367:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (val <= 7) return 7; break; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:367:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (val <= 7) return 7; break; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:370:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (val <= 6) return 6; break; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:370:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (val <= 6) return 6; break; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:372:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (val <= 5) return 5; break; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:372:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (val <= 5) return 5; break; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:374:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (val <= 4) return 4; break; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:374:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (val <= 4) return 4; break; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:385:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (val <= 7) return 7; break; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:385:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (val <= 7) return 7; break; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:388:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (val <= 6) return 6; break; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:388:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (val <= 6) return 6; break; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:390:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (val <= 5) return 5; break; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:390:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (val <= 5) return 5; break; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:392:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (val <= 4) return 4; break; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:392:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (val <= 4) return 4; break; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:394:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (val <= 3) return 3; break; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:394:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (val <= 3) return 3; break; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h: In function 'unsigned int HYDValence(unsigned int, int, unsigned int)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlvalence.h:416:11: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] if (val > impval) { ~~~~^~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlformat.cpp: In member function 'bool OpenBabel::MDLFormat::ReadAtomBlock(std::istream&, OpenBabel::OBMol&, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlformat.cpp:1345:10: warning: unused variable 'chiralWatch' [-Wunused-variable] bool chiralWatch=false; ^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlformat.cpp: In member function 'std::__cxx11::string OpenBabel::MDLFormat::GetTimeDate()': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlformat.cpp:1652:22: warning: '%02d' directive output may be truncated writing between 2 and 11 bytes into a region of size between 0 and 9 [-Wformat-truncation=] snprintf(td, 11, "%02d%02d%02d%02d%02d", ts->tm_mon+1, ts->tm_mday, ^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlformat.cpp:1652:22: note: directive argument in the range [-2147483648, 2147483547] In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6400, from /usr/include/c++/8/string:52, from /usr/include/c++/8/bits/locale_classes.h:40, from /usr/include/c++/8/bits/ios_base.h:41, from /usr/include/c++/8/iomanip:40, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlformat.cpp:27: /usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 11 and 56 bytes into a destination of size 11 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlformat.cpp: In member function 'void OpenBabel::MDLFormat::CisTransFromUpDown(OpenBabel::OBMol*, std::map*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlformat.cpp:1971:58: warning: 'a2_stereo' may be used uninitialized in this function [-Wmaybe-uninitialized] if (a1_stereo == OBStereo::UnknownDir || a2_stereo == OBStereo::UnknownDir) ~~~~~~~~~~^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mdlformat.cpp:1965:7: warning: 'a1_stereo' may be used uninitialized in this function [-Wmaybe-uninitialized] if (a1_stereo == a2_stereo) ^~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/povrayformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/povrayformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/povrayformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/povrayformat.dir/depend.internal". Scanning dependencies of target povrayformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/povrayformat.dir/build.make src/formats/CMakeFiles/povrayformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 56%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opalign.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/opalign.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/ops/opalign.cpp In file included from /usr/include/eigen2/Eigen/Core:103, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/math/align.h:26, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/ops/opalign.cpp:22: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 54%] Building CXX object src/formats/CMakeFiles/PQSformat.dir/PQSformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DPQSformat_EXPORTS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/PQSformat.dir/PQSformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/PQSformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/PQSformat.cpp: In member function 'virtual bool OpenBabel::PQSFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/PQSformat.cpp:259:49: warning: 'pFormat' may be used uninitialized in this function [-Wmaybe-uninitialized] return pFormat->ReadMolecule(&mol,&coordconv); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 56%] Linking CXX shared module ../../lib/PQSformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/PQSformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/PQSformat.so CMakeFiles/PQSformat.dir/PQSformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 56%] Built target PQSformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/inchiformat.dir/build.make src/formats/CMakeFiles/inchiformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/inchiformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/inchiformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/inchiformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/inchiformat.dir/depend.internal". Scanning dependencies of target inchiformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/inchiformat.dir/build.make src/formats/CMakeFiles/inchiformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 56%] Linking CXX shared module ../../lib/mdlformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/mdlformat.so CMakeFiles/mdlformat.dir/mdlformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 56%] Built target mdlformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/reportformat.dir/build.make src/formats/CMakeFiles/reportformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/reportformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/reportformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/reportformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/reportformat.dir/depend.internal". Scanning dependencies of target reportformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/reportformat.dir/build.make src/formats/CMakeFiles/reportformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 54%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/conformer.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/conformer.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/ops/conformer.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/mopacformat.dir/build.make src/formats/CMakeFiles/mopacformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/mopacformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/mopacformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/mopacformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/mopacformat.dir/depend.internal". Scanning dependencies of target mopacformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/mopacformat.dir/build.make src/formats/CMakeFiles/mopacformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 54%] Building CXX object src/formats/CMakeFiles/crystal09format.dir/crystal09format.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dcrystal09format_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/crystal09format.dir/crystal09format.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/crystal09format.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 55%] Building CXX object src/formats/CMakeFiles/mpdformat.dir/mpdformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dmpdformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/mpdformat.dir/mpdformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mpdformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mpdformat.cpp: In member function 'virtual bool OpenBabel::MPDFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mpdformat.cpp:204:42: warning: variable 'idx_true' set but not used [-Wunused-but-set-variable] bool xml_true=false, pre_true=false, idx_true=false; ^~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 56%] Linking CXX shared module ../../lib/crystal09format.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/crystal09format.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/crystal09format.so CMakeFiles/crystal09format.dir/crystal09format.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 56%] Built target crystal09format make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/gromos96format.dir/build.make src/formats/CMakeFiles/gromos96format.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/gromos96format.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/gromos96format.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/gromos96format.dir/depend.internal". 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Scanning dependencies of target gromos96format make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/gromos96format.dir/build.make src/formats/CMakeFiles/gromos96format.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 56%] Linking CXX shared module ../../lib/mpdformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mpdformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/mpdformat.so CMakeFiles/mpdformat.dir/mpdformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 56%] Built target mpdformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/MCDLformat.dir/build.make src/formats/CMakeFiles/MCDLformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/MCDLformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/MCDLformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/MCDLformat.dir/depend.internal". 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c < mol.NumConformers(); ++c) { ~~^~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 56%] Building CXX object src/formats/CMakeFiles/reportformat.dir/reportformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dreportformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/reportformat.dir/reportformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/reportformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 56%] Building CXX object src/formats/CMakeFiles/gromos96format.dir/gromos96format.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dgromos96format_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/gromos96format.dir/gromos96format.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/gromos96format.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 56%] Linking CXX shared module ../../lib/gromos96format.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gromos96format.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/gromos96format.so CMakeFiles/gromos96format.dir/gromos96format.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 56%] Built target gromos96format make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/nwchemformat.dir/build.make src/formats/CMakeFiles/nwchemformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/nwchemformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/nwchemformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/nwchemformat.dir/depend.internal". 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Scanning dependencies of target nwchemformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/nwchemformat.dir/build.make src/formats/CMakeFiles/nwchemformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 56%] Linking CXX shared module ../../lib/reportformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/reportformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/reportformat.so CMakeFiles/reportformat.dir/reportformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 57%] Built target reportformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/pubchem.dir/build.make src/formats/CMakeFiles/pubchem.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/pubchem.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/pubchem.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/pubchem.dir/depend.internal". 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Scanning dependencies of target pubchem make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/pubchem.dir/build.make src/formats/CMakeFiles/pubchem.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 56%] Building CXX object src/formats/CMakeFiles/svgformat.dir/svgformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dsvgformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/svgformat.dir/svgformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/svgformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/svgformat.cpp: In member function 'virtual bool OpenBabel::SVGFormat::WriteChemObject(OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/svgformat.cpp:222:42: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] bool nomore = _nmax && (_objects.size()==_nmax); ~~~~~~~~~~~~~~~^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/svgformat.cpp:244:18: warning: unused variable 'n' [-Wunused-variable] unsigned int n=0; ^ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/svgformat.cpp: In member function 'virtual bool OpenBabel::SVGFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/svgformat.cpp:269:8: warning: unused variable 'ret' [-Wunused-variable] bool ret = WriteSVG(pConv,_objects); ^~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 56%] Building CXX object src/formats/CMakeFiles/povrayformat.dir/povrayformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dpovrayformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/povrayformat.dir/povrayformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/povrayformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/povrayformat.cpp: In member function 'void OpenBabel::PovrayFormat::OutputHeader(std::ostream&, OpenBabel::OBMol&, std::__cxx11::string)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/povrayformat.cpp:168:12: warning: variable 'time_res' set but not used [-Wunused-but-set-variable] size_t time_res; /* Result of strftime */ ^~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/povrayformat.cpp: In member function 'virtual bool OpenBabel::PovrayFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/povrayformat.cpp:802:17: warning: unused variable 'title' [-Wunused-variable] const char* title = pmol->GetTitle(); ^~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 58%] Linking CXX shared module ../../lib/svgformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/svgformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/svgformat.so CMakeFiles/svgformat.dir/svgformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 58%] Built target svgformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/shelxformat.dir/build.make src/formats/CMakeFiles/shelxformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/shelxformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/shelxformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/shelxformat.dir/depend.internal". 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Scanning dependencies of target shelxformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/shelxformat.dir/build.make src/formats/CMakeFiles/shelxformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 56%] Linking CXX shared module ../lib/plugin_ops.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_ops.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../lib/plugin_ops.so CMakeFiles/plugin_ops.dir/ops/addfilename.cpp.o CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o CMakeFiles/plugin_ops.dir/ops/changecell.cpp.o CMakeFiles/plugin_ops.dir/ops/delpolarh.cpp.o CMakeFiles/plugin_ops.dir/ops/delnonpolarh.cpp.o CMakeFiles/plugin_ops.dir/ops/gen2D.cpp.o CMakeFiles/plugin_ops.dir/ops/fillUC.cpp.o CMakeFiles/plugin_ops.dir/ops/forcefield.cpp.o CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o CMakeFiles/plugin_ops.dir/ops/largest.cpp.o CMakeFiles/plugin_ops.dir/ops/loader.cpp.o CMakeFiles/plugin_ops.dir/ops/opsplit.cpp.o CMakeFiles/plugin_ops.dir/ops/optransform.cpp.o CMakeFiles/plugin_ops.dir/ops/partialcharges.cpp.o CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o CMakeFiles/plugin_ops.dir/ops/sort.cpp.o CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o CMakeFiles/plugin_ops.dir/ops/xout.cpp.o CMakeFiles/plugin_ops.dir/ops/conformer.cpp.o CMakeFiles/plugin_ops.dir/ops/opalign.cpp.o CMakeFiles/plugin_ops.dir/ops/opconfab.cpp.o -lm -ldl -lz ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 58%] Built target plugin_ops make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/pwscfformat.dir/build.make src/formats/CMakeFiles/pwscfformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/pwscfformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/pwscfformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/pwscfformat.dir/depend.internal". 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Scanning dependencies of target pwscfformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/pwscfformat.dir/build.make src/formats/CMakeFiles/pwscfformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 58%] Linking CXX shared module ../../lib/povrayformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/povrayformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/povrayformat.so CMakeFiles/povrayformat.dir/povrayformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 58%] Built target povrayformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/cccformat.dir/build.make src/formats/CMakeFiles/cccformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/cccformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/cccformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/cccformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/cccformat.dir/depend.internal". Scanning dependencies of target cccformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/cccformat.dir/build.make src/formats/CMakeFiles/cccformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 58%] Building CXX object src/formats/CMakeFiles/pwscfformat.dir/pwscfformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dpwscfformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/pwscfformat.dir/pwscfformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pwscfformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pwscfformat.cpp: In member function 'virtual bool OpenBabel::PWscfFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pwscfformat.cpp:273:14: warning: 'pv' may be used uninitialized in this function [-Wmaybe-uninitialized] double pv_eV = pv / EV_TO_KCAL_PER_MOL; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/pwscfformat.cpp:272:14: warning: 'enthalpy' may be used uninitialized in this function [-Wmaybe-uninitialized] double en_eV = enthalpy / EV_TO_KCAL_PER_MOL; ^~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 58%] Linking CXX shared module ../../lib/pwscfformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pwscfformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/pwscfformat.so CMakeFiles/pwscfformat.dir/pwscfformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 58%] Built target pwscfformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/qchemformat.dir/build.make src/formats/CMakeFiles/qchemformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/qchemformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/qchemformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/qchemformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/qchemformat.dir/depend.internal". Scanning dependencies of target qchemformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/qchemformat.dir/build.make src/formats/CMakeFiles/qchemformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 58%] Building CXX object src/formats/CMakeFiles/pubchem.dir/xml/pubchem.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dpubchem_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/pubchem.dir/xml/pubchem.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xml/pubchem.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 58%] Building CXX object src/formats/CMakeFiles/pubchem.dir/xml/xml.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dpubchem_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/pubchem.dir/xml/xml.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xml/xml.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 58%] Linking CXX shared module ../../lib/pubchem.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pubchem.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/pubchem.so CMakeFiles/pubchem.dir/xml/pubchem.cpp.o CMakeFiles/pubchem.dir/xml/xml.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm -lxml2 ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 58%] Built target pubchem make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/siestaformat.dir/build.make src/formats/CMakeFiles/siestaformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/siestaformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/siestaformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/siestaformat.dir/depend.internal". 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Scanning dependencies of target siestaformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/siestaformat.dir/build.make src/formats/CMakeFiles/siestaformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 58%] Building CXX object src/formats/CMakeFiles/qchemformat.dir/qchemformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dqchemformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/qchemformat.dir/qchemformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/qchemformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 58%] Building CXX object src/formats/CMakeFiles/shelxformat.dir/shelxformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dshelxformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/shelxformat.dir/shelxformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/shelxformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 60%] Linking CXX shared module ../../lib/qchemformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/qchemformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/qchemformat.so CMakeFiles/qchemformat.dir/qchemformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 60%] Built target qchemformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/fchkformat.dir/build.make src/formats/CMakeFiles/fchkformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/fchkformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/fchkformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/fchkformat.dir/depend.internal". 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Scanning dependencies of target fchkformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/fchkformat.dir/build.make src/formats/CMakeFiles/fchkformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 60%] Linking CXX shared module ../../lib/shelxformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/shelxformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/shelxformat.so CMakeFiles/shelxformat.dir/shelxformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 60%] Built target shelxformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/xsfformat.dir/build.make src/formats/CMakeFiles/xsfformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/xsfformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/xsfformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/xsfformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/xsfformat.dir/depend.internal". Scanning dependencies of target xsfformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/xsfformat.dir/build.make src/formats/CMakeFiles/xsfformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 56%] Building CXX object src/formats/CMakeFiles/inchiformat.dir/inchiformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dinchiformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/inchiformat.dir/inchiformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/inchiformat.cpp In file included from /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/inchiformat.cpp:28: /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/inchiformat.h: In member function 'bool OpenBabel::InChIFormat::InchiLess::operator()(const string&, const string&) const': /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/inchiformat.h:150:13: warning: this 'while' clause does not guard... [-Wmisleading-indentation] while(p1!=s1.end() && isdigit(*p1++)); --p1; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/inchiformat.h:150:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while' while(p1!=s1.end() && isdigit(*p1++)); --p1; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/inchiformat.h:155:13: warning: this 'while' clause does not guard... [-Wmisleading-indentation] while(p2!=s2.end() && isdigit(*p2++)); --p2; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/inchiformat.h:155:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while' while(p2!=s2.end() && isdigit(*p2++)); --p2; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/inchiformat.cpp: In member function 'virtual bool OpenBabel::InChIFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/inchiformat.cpp:177:52: warning: comparison of integer expressions of different signedness: 'long unsigned int' and 'AT_NUM' {aka 'short int'} [-Wsign-compare] if ( !(a->GetId() == ct->end || a->GetId() == stereo.neighbor[0] ) ) { ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/inchiformat.cpp:183:54: warning: comparison of integer expressions of different signedness: 'long unsigned int' and 'AT_NUM' {aka 'short int'} [-Wsign-compare] if ( !(b->GetId() == ct->begin || b->GetId() == stereo.neighbor[3] ) ) { ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 58%] Building CXX object src/formats/CMakeFiles/cccformat.dir/cccformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dcccformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/cccformat.dir/cccformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/cccformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 61%] Linking CXX shared module ../../lib/cccformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cccformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/cccformat.so CMakeFiles/cccformat.dir/cccformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 61%] Built target cccformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/carformat.dir/build.make src/formats/CMakeFiles/carformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/carformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/carformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/carformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/carformat.dir/depend.internal". Scanning dependencies of target carformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/carformat.dir/build.make src/formats/CMakeFiles/carformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 56%] Building CXX object src/formats/CMakeFiles/mopacformat.dir/mopacformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dmopacformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/mopacformat.dir/mopacformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mopacformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mopacformat.cpp: In member function 'virtual bool OpenBabel::MOPACCARTFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mopacformat.cpp:642:19: warning: variable 'isotopeMass' set but not used [-Wunused-but-set-variable] double x,y,z, isotopeMass; ^~~~~~~~~~~ In file included from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/atom.h:35, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/mol.h:42, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/obmolecformat.h:37, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mopacformat.cpp:17: /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/math/vector3.h: In member function 'virtual bool OpenBabel::MOPACFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/math/vector3.h:91:11: warning: 'y' may be used uninitialized in this function [-Wmaybe-uninitialized] _vy = inY; ~~~~^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mopacformat.cpp:73:14: note: 'y' was declared here double x,y,z; ^ In file included from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/atom.h:35, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/mol.h:42, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/obmolecformat.h:37, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mopacformat.cpp:17: /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/math/vector3.h:90:11: warning: 'x' may be used uninitialized in this function [-Wmaybe-uninitialized] _vx = inX; ~~~~^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/mopacformat.cpp:73:12: note: 'x' was declared here double x,y,z; ^ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 60%] Building CXX object src/formats/CMakeFiles/inchiformat.dir/getinchi.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dinchiformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/inchiformat.dir/getinchi.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/getinchi.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 62%] Linking CXX shared module ../../lib/mopacformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mopacformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/mopacformat.so CMakeFiles/mopacformat.dir/mopacformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 63%] Built target mopacformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/tinkerformat.dir/build.make src/formats/CMakeFiles/tinkerformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/tinkerformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/tinkerformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/tinkerformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/tinkerformat.dir/depend.internal". Scanning dependencies of target tinkerformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/tinkerformat.dir/build.make src/formats/CMakeFiles/tinkerformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 59%] Building CXX object src/formats/CMakeFiles/siestaformat.dir/siestaformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dsiestaformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/siestaformat.dir/siestaformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/siestaformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/siestaformat.cpp: In member function 'virtual bool OpenBabel::SIESTAFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/siestaformat.cpp:82:10: warning: variable 'coordsAreAngstrom' set but not used [-Wunused-but-set-variable] bool coordsAreAngstrom = false; ^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/siestaformat.cpp:88:12: warning: variable 'size' set but not used [-Wunused-but-set-variable] size_t size; ^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/siestaformat.cpp:92:30: warning: unused variable 'numSpecies' [-Wunused-variable] int atomicNum, numAtoms, numSpecies; ^~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 63%] Linking CXX shared module ../../lib/siestaformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/siestaformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/siestaformat.so CMakeFiles/siestaformat.dir/siestaformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 63%] Built target siestaformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/asciiformat.dir/build.make src/formats/CMakeFiles/asciiformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/asciiformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/asciiformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/asciiformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/asciiformat.dir/depend.internal". Scanning dependencies of target asciiformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/asciiformat.dir/build.make src/formats/CMakeFiles/asciiformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 62%] Building CXX object src/formats/CMakeFiles/carformat.dir/carformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dcarformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/carformat.dir/carformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/carformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 63%] Building CXX object src/formats/CMakeFiles/tinkerformat.dir/tinkerformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dtinkerformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/tinkerformat.dir/tinkerformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/tinkerformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/tinkerformat.cpp: In member function 'virtual bool OpenBabel::TinkerFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/tinkerformat.cpp:101:9: warning: unused variable 'atomicNum' [-Wunused-variable] int atomicNum; ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/tinkerformat.cpp: In function 'int OpenBabel::SetMM3Type(OpenBabel::OBAtom*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/tinkerformat.cpp:377:11: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (b->GetHyb() == 2) // S=C ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/tinkerformat.cpp:378:31: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' countNeighborC++; break; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/tinkerformat.cpp:220:17: warning: unused variable 'c' [-Wunused-variable] OBAtom *b, *c; // neighbors ^ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 63%] Linking CXX shared module ../../lib/carformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/carformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/carformat.so CMakeFiles/carformat.dir/carformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 64%] Built target carformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/turbomoleformat.dir/build.make src/formats/CMakeFiles/turbomoleformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/turbomoleformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/turbomoleformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/turbomoleformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/turbomoleformat.dir/depend.internal". Scanning dependencies of target turbomoleformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/turbomoleformat.dir/build.make src/formats/CMakeFiles/turbomoleformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 64%] Linking CXX shared module ../../lib/tinkerformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinkerformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/tinkerformat.so CMakeFiles/tinkerformat.dir/tinkerformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 64%] Built target tinkerformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/acrformat.dir/build.make src/formats/CMakeFiles/acrformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/acrformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/acrformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/acrformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/acrformat.dir/depend.internal". Scanning dependencies of target acrformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/acrformat.dir/build.make src/formats/CMakeFiles/acrformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 63%] Building CXX object src/formats/CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dinchiformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/ops/unique.cpp In file included from /usr/src/RPM/BUILD/openbabel-2.4.1/src/ops/unique.cpp:23: /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/inchiformat.h: In member function 'bool OpenBabel::InChIFormat::InchiLess::operator()(const string&, const string&) const': /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/inchiformat.h:150:13: warning: this 'while' clause does not guard... [-Wmisleading-indentation] while(p1!=s1.end() && isdigit(*p1++)); --p1; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/inchiformat.h:150:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while' while(p1!=s1.end() && isdigit(*p1++)); --p1; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/inchiformat.h:155:13: warning: this 'while' clause does not guard... [-Wmisleading-indentation] while(p2!=s2.end() && isdigit(*p2++)); --p2; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/inchiformat.h:155:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while' while(p2!=s2.end() && isdigit(*p2++)); --p2; ^~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 63%] Building CXX object src/formats/CMakeFiles/asciiformat.dir/asciiformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dasciiformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/asciiformat.dir/asciiformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/asciiformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 64%] Linking CXX shared module ../../lib/inchiformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/inchiformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/inchiformat.so CMakeFiles/inchiformat.dir/inchiformat.cpp.o CMakeFiles/inchiformat.dir/getinchi.cpp.o CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 65%] Built target inchiformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/rsmiformat.dir/build.make src/formats/CMakeFiles/rsmiformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/rsmiformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/rsmiformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/rsmiformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/rsmiformat.dir/depend.internal". Scanning dependencies of target rsmiformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/rsmiformat.dir/build.make src/formats/CMakeFiles/rsmiformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 60%] Building CXX object src/formats/CMakeFiles/fchkformat.dir/fchkformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dfchkformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/fchkformat.dir/fchkformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/fchkformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/fchkformat.cpp: In member function 'virtual bool OpenBabel::FCHKFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/fchkformat.cpp:587:40: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] if (alphaorb_found && (numAOrb > alphaorb.size())) ~~~~~~~~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/fchkformat.cpp:600:40: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] if (betaorb_found && (numBOrb > betaorb.size())) ~~~~~~~~^~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/fchkformat.cpp:691:40: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] if (numAOrb > 0 && alphaorb.size() == numAOrb) { ~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/fchkformat.cpp:695:41: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] if (numBOrb > 0 && betaorb.size() == numBOrb) { // open shell calculation ~~~~~~~~~~~~~~~^~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 65%] Linking CXX shared module ../../lib/fchkformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fchkformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/fchkformat.so CMakeFiles/fchkformat.dir/fchkformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 65%] Built target fchkformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/gaussformat.dir/build.make src/formats/CMakeFiles/gaussformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/gaussformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/gaussformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/gaussformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/gaussformat.dir/depend.internal". Scanning dependencies of target gaussformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/gaussformat.dir/build.make src/formats/CMakeFiles/gaussformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 57%] Building CXX object src/formats/CMakeFiles/nwchemformat.dir/nwchemformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dnwchemformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/nwchemformat.dir/nwchemformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/nwchemformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/nwchemformat.cpp: In member function 'void OpenBabel::NWChemOutputFormat::ReadCoordinates(std::istream*, OpenBabel::OBMol*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/nwchemformat.cpp:221:72: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] if ((i>=natoms) || (molecule->GetAtom(i+1)->GetAtomicNum() != atoi(vs[2].c_str()))) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/nwchemformat.cpp: In member function 'void OpenBabel::NWChemOutputFormat::ReadMultipoleMoment(std::istream*, OpenBabel::OBMol*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/nwchemformat.cpp:296:17: warning: suggest explicit braces to avoid ambiguous 'else' [-Wdangling-else] else if (vs[0][0] == '1') ^ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/nwchemformat.cpp: In member function 'void OpenBabel::NWChemOutputFormat::ReadPartialCharges(std::istream*, OpenBabel::OBMol*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/nwchemformat.cpp:413:56: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] if (molecule->GetAtom(i++)->GetAtomicNum() != charge) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/nwchemformat.cpp: In member function 'void OpenBabel::NWChemOutputFormat::ReadMEPCalculation(std::istream*, OpenBabel::OBMol*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/nwchemformat.cpp:561:25: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] if (energies.size() != molecule->NumConformers()) ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/nwchemformat.cpp: In member function 'void OpenBabel::NWChemOutputFormat::ReadNEBCalculation(std::istream*, OpenBabel::OBMol*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/nwchemformat.cpp:826:79: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] if (etab.GetAtomicNum(vs[1].substr(0, end_of_symbol).c_str()) != molecule->GetAtom(i+1)->GetAtomicNum()) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/nwchemformat.cpp: In member function 'void OpenBabel::NWChemOutputFormat::ReadZTSCalculation(std::istream*, OpenBabel::OBMol*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/nwchemformat.cpp:914:34: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] if (atoi(buffer) != natoms) ~~~~~~~~~~~~~^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/nwchemformat.cpp:924:84: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] if ((vs.size() < 4) || (molecule->GetAtom(i+1)->GetAtomicNum() != etab.GetAtomicNum(vs[0].c_str()))) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/nwchemformat.cpp: At global scope: /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/nwchemformat.cpp:104:20: warning: 'OpenBabel::BETA_ORBITAL_PATTERN' defined but not used [-Wunused-variable] static const char* BETA_ORBITAL_PATTERN = "Beta"; ^~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/nwchemformat.cpp: In member function 'void OpenBabel::NWChemOutputFormat::ReadCoordinates(std::istream*, OpenBabel::OBMol*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/nwchemformat.cpp:195:13: warning: 'coordinates' may be used uninitialized in this function [-Wmaybe-uninitialized] double* coordinates; ^~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/nwchemformat.cpp: In member function 'void OpenBabel::NWChemOutputFormat::ReadZTSCalculation(std::istream*, OpenBabel::OBMol*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/nwchemformat.cpp:939:21: warning: 'nbeads' may be used uninitialized in this function [-Wmaybe-uninitialized] if (bead_number != nbeads) ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/nwchemformat.cpp: In member function 'void OpenBabel::NWChemOutputFormat::ReadMultipoleMoment(std::istream*, OpenBabel::OBMol*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/nwchemformat.cpp:278:41: warning: 'charge' may be used uninitialized in this function [-Wmaybe-uninitialized] molecule->SetTotalCharge(charge); ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/nwchemformat.cpp: In member function 'void OpenBabel::NWChemOutputFormat::ReadSinglePointCalculation(std::istream*, OpenBabel::OBMol*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/nwchemformat.cpp:758:5: warning: 'energy' may be used uninitialized in this function [-Wmaybe-uninitialized] if (energy == 0) ^~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 60%] Building CXX object src/formats/CMakeFiles/xsfformat.dir/xsfformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dxsfformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/xsfformat.dir/xsfformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xsfformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 66%] Linking CXX shared module ../../lib/nwchemformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/nwchemformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/nwchemformat.so CMakeFiles/nwchemformat.dir/nwchemformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 66%] Built target nwchemformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/vaspformat.dir/build.make src/formats/CMakeFiles/vaspformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/vaspformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/vaspformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/vaspformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/vaspformat.dir/depend.internal". Scanning dependencies of target vaspformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/vaspformat.dir/build.make src/formats/CMakeFiles/vaspformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 66%] Linking CXX shared module ../../lib/xsfformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/xsfformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/xsfformat.so CMakeFiles/xsfformat.dir/xsfformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 65%] Building CXX object src/formats/CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dasciiformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/depict/asciipainter.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/depict/asciipainter.cpp: In member function 'virtual void OpenBabel::ASCIIPainter::DrawText(double, double, const string&)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/depict/asciipainter.cpp:118:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'unsigned int'} [-Wsign-compare] for (int i=0; iNumBonds() != bonds ) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/acrformat.cpp:163:12: warning: 'atoms' may be used uninitialized in this function [-Wmaybe-uninitialized] } else if ( pmol->NumAtoms() != atoms ) { ^~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 66%] Linking CXX shared module ../../lib/turbomoleformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/turbomoleformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/turbomoleformat.so CMakeFiles/turbomoleformat.dir/turbomoleformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 67%] Built target turbomoleformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/chemkinformat.dir/build.make src/formats/CMakeFiles/chemkinformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/chemkinformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/chemkinformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/chemkinformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/chemkinformat.dir/depend.internal". Scanning dependencies of target chemkinformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/chemkinformat.dir/build.make src/formats/CMakeFiles/chemkinformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 56%] Building CXX object src/formats/CMakeFiles/MCDLformat.dir/MCDLformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMCDLformat_EXPORTS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/MCDLformat.dir/MCDLformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/MCDLformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/MCDLformat.cpp: In member function 'void OpenBabel::MCDLFormat::solve(int, int (*)[4], int)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/MCDLformat.cpp:278:9: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (jflag) ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/MCDLformat.cpp:282:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' nt = 1; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/MCDLformat.cpp: In member function 'std::__cxx11::string OpenBabel::MCDLFormat::getMCDL(OpenBabel::OBMol*, bool)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/MCDLformat.cpp:529:10: warning: variable 'test' set but not used [-Wunused-but-set-variable] bool test;//, testParity; ^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/MCDLformat.cpp: In member function 'void OpenBabel::MCDLFormat::setMCDL(std::__cxx11::string, OpenBabel::OBMol*, std::__cxx11::string&)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/MCDLformat.cpp:1266:15: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] if (nPrev == acount) { ~~~~~~^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/MCDLformat.cpp: In member function 'int OpenBabel::MCDLFormat::indexOf(std::__cxx11::string, std::__cxx11::string, int)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/MCDLformat.cpp:1384:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'unsigned int'} [-Wsign-compare] if (result == string::npos) result=-1; ~~~~~~~^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/MCDLformat.cpp:1385:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'unsigned int'} [-Wsign-compare] if (result >= instring.length()) result=-1; ~~~~~~~^~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/MCDLformat.cpp: In member function 'int OpenBabel::MCDLFormat::lastIndexOf(std::__cxx11::string, std::__cxx11::string)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/MCDLformat.cpp:1398:11: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'unsigned int'} [-Wsign-compare] if (n == string::npos) ~~^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/MCDLformat.cpp: In member function 'std::__cxx11::string OpenBabel::MCDLFormat::constring(int (*)[4], char*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/MCDLformat.cpp:209:30: warning: '%s' directive writing up to 99 bytes into a region of size 82 [-Wformat-overflow=] sprintf(line,"%s%d",semis,icons[j]); ^~~~~~ ~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6400, from /usr/include/c++/8/string:52, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/mol.h:35, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/obmolecformat.h:37, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/MCDLformat.cpp:21: /usr/include/bits/stdio2.h:33:34: note: '__builtin___sprintf_chk' output between 2 and 111 bytes into a destination of size 82 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/MCDLformat.cpp: In member function 'void OpenBabel::MCDLFormat::solve(int, int (*)[4], int)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/MCDLformat.cpp:394:35: warning: 'jump' may be used uninitialized in this function [-Wmaybe-uninitialized] ix[i] = mx[i] + jump + 1; ~~~~~~^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/MCDLformat.cpp:395:22: warning: 'dupfrag' may be used uninitialized in this function [-Wmaybe-uninitialized] else if (ix[i] == dupfrag && j != dupnum) ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/MCDLformat.cpp:385:24: warning: 'numdups' may be used uninitialized in this function [-Wmaybe-uninitialized] for (j=0; j >::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] while(vs.size() == nColumn+1) { ~~~~~~~~~~^~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/orcaformat.cpp:353:48: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] for (unsigned int i = 0; i < nColumn; i++) { ~~^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/orcaformat.cpp:365:44: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] for (unsigned int i = 0; i < nColumn; i++) { ~~^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/orcaformat.cpp:121:12: warning: unused variable 'energy' [-Wunused-variable] double energy=0; ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/orcaformat.cpp:128:9: warning: variable 'nModeAll' set but not used [-Wunused-but-set-variable] int nModeAll = 0; ^~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/orcaformat.cpp: In member function 'virtual bool OpenBabel::OrcaInputFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/orcaformat.cpp:646:10: warning: unused variable 'buffer' [-Wunused-variable] char buffer[BUFF_SIZE]; ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/orcaformat.cpp: In member function 'virtual bool OpenBabel::OrcaOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/orcaformat.cpp:210:36: warning: 'atom' may be used uninitialized in this function [-Wmaybe-uninitialized] atom->SetVector(x,y,z); //set atom coordinates ~~~~~~~~~~~~~~~^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/orcaformat.cpp:207:37: warning: 'confCoords' may be used uninitialized in this function [-Wmaybe-uninitialized] confCoords[i*3+2] = z; ^ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 73%] Linking CXX shared module ../../lib/orcaformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/orcaformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/orcaformat.so CMakeFiles/orcaformat.dir/orcaformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 73%] Built target orcaformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/castepformat.dir/build.make src/formats/CMakeFiles/castepformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 72%] Building CXX object src/formats/CMakeFiles/gulpformat.dir/gulpformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dgulpformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/gulpformat.dir/gulpformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/gulpformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/gulpformat.cpp: In member function 'virtual bool OpenBabel::GULPFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/gulpformat.cpp:352:14: warning: 'pv_eV' may be used uninitialized in this function [-Wmaybe-uninitialized] double pv_kcal_per_mole = pv_eV * EV_TO_KCAL_PER_MOL; ^~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/gulpformat.cpp:351:14: warning: 'enthalpy_eV' may be used uninitialized in this function [-Wmaybe-uninitialized] double en_kcal_per_mole = enthalpy_eV * EV_TO_KCAL_PER_MOL; ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/castepformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/castepformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/castepformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/castepformat.dir/depend.internal". Scanning dependencies of target castepformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/castepformat.dir/build.make src/formats/CMakeFiles/castepformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 66%] Building CXX object src/formats/CMakeFiles/vaspformat.dir/vaspformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dvaspformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/vaspformat.dir/vaspformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/vaspformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/vaspformat.cpp: In member function 'virtual bool OpenBabel::VASPFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/vaspformat.cpp:438:17: warning: unused variable 'freqnum' [-Wunused-variable] int freqnum = atoi(vs[0].c_str()); ^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/vaspformat.cpp: In member function 'virtual bool OpenBabel::VASPFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/vaspformat.cpp:657:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] for(int i = 0; i < atoms_sorted.size(); i++) ~~^~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/vaspformat.cpp:668:9: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if(atomicNums.size() > 0); ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/vaspformat.cpp:669:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' atomicNums.rbegin()->second++; ^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/vaspformat.cpp: In member function 'virtual bool OpenBabel::VASPFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/vaspformat.cpp:397:21: warning: 'fermi' may be used uninitialized in this function [-Wmaybe-uninitialized] dos->SetData(fermi, energies, densities, integration); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/vaspformat.cpp: In member function 'virtual bool OpenBabel::VASPFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/vaspformat.cpp:752:26: warning: 'atom' may be used uninitialized in this function [-Wmaybe-uninitialized] if (atom->HasData("move")) { ~~~~~~~~~~~~~^~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 73%] Linking CXX shared module ../../lib/gulpformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gulpformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/gulpformat.so CMakeFiles/gulpformat.dir/gulpformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 73%] Built target gulpformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/chemdrawct.dir/build.make src/formats/CMakeFiles/chemdrawct.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/chemdrawct.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/chemdrawct.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/chemdrawct.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/chemdrawct.dir/depend.internal". Scanning dependencies of target chemdrawct make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/chemdrawct.dir/build.make src/formats/CMakeFiles/chemdrawct.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 73%] Linking CXX shared module ../../lib/vaspformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/vaspformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/vaspformat.so CMakeFiles/vaspformat.dir/vaspformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 73%] Built target vaspformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/ghemicalformat.dir/build.make src/formats/CMakeFiles/ghemicalformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/ghemicalformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/ghemicalformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/ghemicalformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/ghemicalformat.dir/depend.internal". Scanning dependencies of target ghemicalformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/ghemicalformat.dir/build.make src/formats/CMakeFiles/ghemicalformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 73%] Building CXX object src/formats/CMakeFiles/chem3dformat.dir/chem3dformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dchem3dformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/chem3dformat.dir/chem3dformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/chem3dformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/chem3dformat.cpp: In static member function 'static bool OpenBabel::CHEM3D1Format::WriteChem3d(std::ostream&, OpenBabel::OBMol&, const char*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/chem3dformat.cpp:298:51: warning: '%d' directive output may be truncated writing between 1 and 10 bytes into a region of size 4 [-Wformat-truncation=] snprintf(type_name, sizeof(type_num), "%d",type_num); ^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/chem3dformat.cpp:298:51: note: directive argument in the range [-536870912, 536873461] In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6400, from /usr/include/c++/8/string:52, from /usr/include/c++/8/bits/locale_classes.h:40, from /usr/include/c++/8/bits/ios_base.h:41, from /usr/include/c++/8/ios:42, from /usr/include/c++/8/ostream:38, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/math/matrix3x3.h:24, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/chem3dformat.cpp:17: /usr/include/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 2 and 11 bytes into a destination of size 4 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 66%] Building CXX object src/formats/CMakeFiles/gaussformat.dir/gaussformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dgaussformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/gaussformat.dir/gaussformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/gaussformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/gaussformat.cpp: In function 'void OpenBabel::add_unique_pairdata_to_mol(OpenBabel::OBMol*, std::__cxx11::string, std::__cxx11::string, int)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/gaussformat.cpp:275:19: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] if (vs.size() >= start) ~~~~~~~~~~^~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/gaussformat.cpp:278:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] for(i=start+1; (i)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/gaussformat.cpp:332:17: warning: unused variable 'pg' [-Wunused-variable] const char *pg = obPG.IdentifyPointGroup(); ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/gaussformat.cpp: In member function 'virtual bool OpenBabel::GaussianOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/gaussformat.cpp:319:14: warning: 'E0' may be used uninitialized in this function [-Wmaybe-uninitialized] dhofM0 = E0*eFactor; ~~~~~~~~~^~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/gaussformat.cpp:450:29: note: 'E0' was declared here double ezpe,Hcorr,Gcorr,E0,CV; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/gaussformat.cpp:325:36: warning: 'Gcorr' may be used uninitialized in this function [-Wmaybe-uninitialized] S0MT += 1000*eFactor*(Hcorr-Gcorr)/temperature; ~~~~~~^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/gaussformat.cpp:450:23: note: 'Gcorr' was declared here double ezpe,Hcorr,Gcorr,E0,CV; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/gaussformat.cpp:325:36: warning: 'Hcorr' may be used uninitialized in this function [-Wmaybe-uninitialized] S0MT += 1000*eFactor*(Hcorr-Gcorr)/temperature; ~~~~~~^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/gaussformat.cpp:450:17: note: 'Hcorr' was declared here double ezpe,Hcorr,Gcorr,E0,CV; ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/gaussformat.cpp:320:29: warning: 'ezpe' may be used uninitialized in this function [-Wmaybe-uninitialized] dhofMT = dhofM0+(Hcorr-ezpe)*eFactor; ~~~~~~^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/gaussformat.cpp:450:12: note: 'ezpe' was declared here double ezpe,Hcorr,Gcorr,E0,CV; ^~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 74%] Linking CXX shared module ../../lib/chem3dformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/chem3dformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/chem3dformat.so CMakeFiles/chem3dformat.dir/chem3dformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 74%] Built target chem3dformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/fingerprintformat.dir/build.make src/formats/CMakeFiles/fingerprintformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 73%] Building CXX object src/formats/CMakeFiles/amberformat.dir/amberformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Damberformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/amberformat.dir/amberformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/amberformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/fingerprintformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/fingerprintformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/fingerprintformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/fingerprintformat.dir/depend.internal". Scanning dependencies of target fingerprintformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/fingerprintformat.dir/build.make src/formats/CMakeFiles/fingerprintformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 74%] Linking CXX shared module ../../lib/gaussformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gaussformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/gaussformat.so CMakeFiles/gaussformat.dir/gaussformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 74%] Built target gaussformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/bgfformat.dir/build.make src/formats/CMakeFiles/bgfformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/bgfformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/bgfformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/bgfformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/bgfformat.dir/depend.internal". Scanning dependencies of target bgfformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/bgfformat.dir/build.make src/formats/CMakeFiles/bgfformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 67%] Building CXX object src/formats/CMakeFiles/chemkinformat.dir/chemkinformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dchemkinformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/chemkinformat.dir/chemkinformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/chemkinformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/chemkinformat.cpp: In member function 'bool OpenBabel::ChemKinFormat::ReadReactionQualifierLines(std::istream&, OpenBabel::OBReaction*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/chemkinformat.cpp:634:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] for(int i=0;iReactionType) ^ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/chemkinformat.cpp:905:11: warning: enumeration value 'THREEBODY' not handled in switch [-Wswitch] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/chemkinformat.cpp:984:11: warning: enumeration value 'ARRHENIUS' not handled in switch [-Wswitch] switch(pRD->ReactionType) ^ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/chemkinformat.cpp:984:11: warning: enumeration value 'SRI' not handled in switch [-Wswitch] make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 74%] Linking CXX shared module ../../lib/amberformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/amberformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/amberformat.so CMakeFiles/amberformat.dir/amberformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 75%] Built target amberformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/crkformat.dir/build.make src/formats/CMakeFiles/crkformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/crkformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/crkformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/crkformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/crkformat.dir/depend.internal". Scanning dependencies of target crkformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/crkformat.dir/build.make src/formats/CMakeFiles/crkformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 75%] Linking CXX shared module ../../lib/chemkinformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/chemkinformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/chemkinformat.so CMakeFiles/chemkinformat.dir/chemkinformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 75%] Built target chemkinformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/cacheformat.dir/build.make src/formats/CMakeFiles/cacheformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/cacheformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/cacheformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/cacheformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/cacheformat.dir/depend.internal". Scanning dependencies of target cacheformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/cacheformat.dir/build.make src/formats/CMakeFiles/cacheformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 73%] Building CXX object src/formats/CMakeFiles/chemdrawct.dir/chemdrawct.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dchemdrawct_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/chemdrawct.dir/chemdrawct.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/chemdrawct.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 75%] Linking CXX shared module ../../lib/chemdrawct.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/chemdrawct.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/chemdrawct.so CMakeFiles/chemdrawct.dir/chemdrawct.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 75%] Built target chemdrawct make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/exyzformat.dir/build.make src/formats/CMakeFiles/exyzformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/exyzformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/exyzformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/exyzformat.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/exyzformat.dir/depend.internal". Scanning dependencies of target exyzformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/exyzformat.dir/build.make src/formats/CMakeFiles/exyzformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 68%] Building CXX object src/formats/CMakeFiles/cifformat.dir/cifformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dcifformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/cifformat.dir/cifformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/cifformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/cifformat.cpp: In member function 'void OpenBabel::CIFData::CalcMatrices()': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/cifformat.cpp:900:11: warning: variable 'aa' set but not used [-Wunused-but-set-variable] float aa,bb,cc,alphaa,betaa,gammaa;//reciprocal space parameters ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/cifformat.cpp:900:14: warning: variable 'bb' set but not used [-Wunused-but-set-variable] float aa,bb,cc,alphaa,betaa,gammaa;//reciprocal space parameters ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/cifformat.cpp:900:27: warning: variable 'betaa' set but not used [-Wunused-but-set-variable] float aa,bb,cc,alphaa,betaa,gammaa;//reciprocal space parameters ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/cifformat.cpp:900:33: warning: variable 'gammaa' set but not used [-Wunused-but-set-variable] float aa,bb,cc,alphaa,betaa,gammaa;//reciprocal space parameters ^~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 73%] Building CXX object src/formats/CMakeFiles/castepformat.dir/castepformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dcastepformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/castepformat.dir/castepformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/castepformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/castepformat.cpp: In member function 'virtual bool OpenBabel::CASTEPFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/castepformat.cpp:188:16: warning: 'enthalpy' may be used uninitialized in this function [-Wmaybe-uninitialized] energy = enthalpy - pv; ~~~~~~~^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/castepformat.cpp:187:21: warning: 'volume' may be used uninitialized in this function [-Wmaybe-uninitialized] pv = volume * pressure * GPA_A3_TO_KCAL_PER_MOL; ~~~~~~~^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/castepformat.cpp:187:21: warning: 'pressure' may be used uninitialized in this function [-Wmaybe-uninitialized] make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 76%] Linking CXX shared module ../../lib/cifformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cifformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/cifformat.so CMakeFiles/cifformat.dir/cifformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 76%] Built target cifformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/xedformat.dir/build.make src/formats/CMakeFiles/xedformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 76%] Linking CXX shared module ../../lib/castepformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/castepformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/castepformat.so CMakeFiles/castepformat.dir/castepformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 73%] Building CXX object src/formats/CMakeFiles/ghemicalformat.dir/ghemicalformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dghemicalformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/ghemicalformat.dir/ghemicalformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/ghemicalformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 76%] Built target castepformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/fastsearchformat.dir/build.make src/formats/CMakeFiles/fastsearchformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/xedformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/xedformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/xedformat.dir/depend.internal". 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Scanning dependencies of target xedformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/xedformat.dir/build.make src/formats/CMakeFiles/xedformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/fastsearchformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/fastsearchformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/fastsearchformat.dir/depend.internal". 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Scanning dependencies of target fastsearchformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/fastsearchformat.dir/build.make src/formats/CMakeFiles/fastsearchformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 77%] Linking CXX shared module ../../lib/ghemicalformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/ghemicalformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/ghemicalformat.so CMakeFiles/ghemicalformat.dir/ghemicalformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 77%] Built target ghemicalformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/smilesformat.dir/build.make src/formats/CMakeFiles/smilesformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/smilesformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/smilesformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/smilesformat.dir/depend.internal". 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Scanning dependencies of target smilesformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/smilesformat.dir/build.make src/formats/CMakeFiles/smilesformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 74%] Building CXX object src/formats/CMakeFiles/fingerprintformat.dir/fingerprintformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dfingerprintformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/fingerprintformat.dir/fingerprintformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/fingerprintformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 78%] Linking CXX shared module ../../lib/fingerprintformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fingerprintformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/fingerprintformat.so CMakeFiles/fingerprintformat.dir/fingerprintformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 78%] Built target fingerprintformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/fastaformat.dir/build.make src/formats/CMakeFiles/fastaformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/fastaformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/fastaformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/fastaformat.dir/depend.internal". 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Scanning dependencies of target fastaformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/fastaformat.dir/build.make src/formats/CMakeFiles/fastaformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 75%] Building CXX object src/formats/CMakeFiles/bgfformat.dir/bgfformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dbgfformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/bgfformat.dir/bgfformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/bgfformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 75%] Building CXX object src/formats/CMakeFiles/cacheformat.dir/cacheformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dcacheformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/cacheformat.dir/cacheformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/cacheformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 78%] Linking CXX shared module ../../lib/bgfformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/bgfformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/bgfformat.so CMakeFiles/bgfformat.dir/bgfformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 78%] Built target bgfformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/featformat.dir/build.make src/formats/CMakeFiles/featformat.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/featformat.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/featformat.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/featformat.dir/depend.internal". 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Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/CMakeFiles/fpsformat.dir/depend.internal". Scanning dependencies of target fpsformat make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/formats/CMakeFiles/fpsformat.dir/build.make src/formats/CMakeFiles/fpsformat.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 75%] Building CXX object src/formats/CMakeFiles/crkformat.dir/crkformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dcrkformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/crkformat.dir/crkformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/crkformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/crkformat.cpp: In static member function 'static bool OpenBabel::CRK2DFormat::ReadCRK(std::istream&, OpenBabel::OBMol&, const char*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/crkformat.cpp:304:38: warning: 'bondStyle' may be used uninitialized in this function [-Wmaybe-uninitialized] stbondStyle[numBonds]=bondStyle; ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/crkformat.cpp:302:35: warning: 'bondTo' may be used uninitialized in this function [-Wmaybe-uninitialized] stbondTo[numBonds]=bondTo; ~~~~~~~~~~~~~~~~~~^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/crkformat.cpp:301:37: warning: 'bondFrom' may be used uninitialized in this function [-Wmaybe-uninitialized] stbondFrom[numBonds]=bondFrom; ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/crkformat.cpp:287:36: warning: 'atomCharge' may be used uninitialized in this function [-Wmaybe-uninitialized] atm.SetFormalCharge((int)atomCharge); ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/crkformat.cpp:286:30: warning: 'atomZ' may be used uninitialized in this function [-Wmaybe-uninitialized] atm.SetVector(atomX,atomY,atomZ); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/crkformat.cpp:286:30: warning: 'atomY' may be used uninitialized in this function [-Wmaybe-uninitialized] /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/crkformat.cpp:286:30: warning: 'atomX' may be used uninitialized in this function [-Wmaybe-uninitialized] In file included from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/mol.h:42, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/obmolecformat.h:37, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/crkformat.cpp:16: /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/atom.h:144:52: warning: 'atomNumber' may be used uninitialized in this function [-Wmaybe-uninitialized] void SetAtomicNum(int atomicnum) { _ele = (char)atomicnum; } ^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/crkformat.cpp:241:16: note: 'atomNumber' was declared here int atomID,atomNumber; ^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/crkformat.cpp:283:37: warning: 'atomID' may be used uninitialized in this function [-Wmaybe-uninitialized] statomID[numAtoms++]=atomID; ~~~~~~~~~~~~~~~~~~~~^~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 77%] Building CXX object src/formats/CMakeFiles/xedformat.dir/xedformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dxedformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/xedformat.dir/xedformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/xedformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 79%] Linking CXX shared module ../../lib/crkformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/crkformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/crkformat.so CMakeFiles/crkformat.dir/crkformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 79%] Built target crkformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f tools/CMakeFiles/obfit.dir/build.make tools/CMakeFiles/obfit.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/tools /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/tools /usr/src/RPM/BUILD/openbabel-2.4.1/tools/CMakeFiles/obfit.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/tools/CMakeFiles/obfit.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/tools/CMakeFiles/obfit.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/tools/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/tools/CMakeFiles/obfit.dir/depend.internal". Scanning dependencies of target obfit make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f tools/CMakeFiles/obfit.dir/build.make tools/CMakeFiles/obfit.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 79%] Linking CXX shared module ../../lib/xedformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/xedformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/xedformat.so CMakeFiles/xedformat.dir/xedformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 80%] Built target xedformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f tools/CMakeFiles/obenergy.dir/build.make tools/CMakeFiles/obenergy.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/tools /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/tools /usr/src/RPM/BUILD/openbabel-2.4.1/tools/CMakeFiles/obenergy.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/tools/CMakeFiles/obenergy.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/tools/CMakeFiles/obenergy.dir/depend.internal". 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Scanning dependencies of target obenergy make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f tools/CMakeFiles/obenergy.dir/build.make tools/CMakeFiles/obenergy.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 76%] Building CXX object src/formats/CMakeFiles/exyzformat.dir/exyzformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dexyzformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/exyzformat.dir/exyzformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/exyzformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/exyzformat.cpp: In member function 'virtual bool OpenBabel::EXYZFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/exyzformat.cpp:118:19: warning: variable 'virtualAtoms' set but not used [-Wunused-but-set-variable] bool unitCell,virtualAtoms; ^~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 78%] Building CXX object src/formats/CMakeFiles/featformat.dir/featformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dfeatformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/featformat.dir/featformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/featformat.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 80%] Linking CXX shared module ../../lib/exyzformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/exyzformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/exyzformat.so CMakeFiles/exyzformat.dir/exyzformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 80%] Built target exyzformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f tools/CMakeFiles/obgrep.dir/build.make tools/CMakeFiles/obgrep.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 80%] Linking CXX shared module ../../lib/featformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/featformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/featformat.so CMakeFiles/featformat.dir/featformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 80%] Built target featformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f tools/CMakeFiles/obrotamer.dir/build.make tools/CMakeFiles/obrotamer.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/tools /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/tools /usr/src/RPM/BUILD/openbabel-2.4.1/tools/CMakeFiles/obgrep.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/tools/CMakeFiles/obgrep.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/tools/CMakeFiles/obgrep.dir/depend.internal". 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Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/tools/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/tools/CMakeFiles/obrotamer.dir/depend.internal". Scanning dependencies of target obrotamer make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f tools/CMakeFiles/obrotamer.dir/build.make tools/CMakeFiles/obrotamer.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 78%] Building CXX object src/formats/CMakeFiles/fpsformat.dir/fpsformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dfpsformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/fpsformat.dir/fpsformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/fpsformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/fpsformat.cpp: In member function 'virtual bool OpenBabel::FPSFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/fpsformat.cpp:146:21: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] for(unsigned i=0;i<(_nbits+31)/32;++i) ~^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/fpsformat.cpp: In member function 'std::__cxx11::string OpenBabel::FPSFormat::getTimeStr()': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/fpsformat.cpp:169:10: warning: variable 'time_res' set but not used [-Wunused-but-set-variable] size_t time_res; /* Result of strftime */ ^~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 81%] Linking CXX shared module ../../lib/fpsformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fpsformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/fpsformat.so CMakeFiles/fpsformat.dir/fpsformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 81%] Built target fpsformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f tools/CMakeFiles/obchiral.dir/build.make tools/CMakeFiles/obchiral.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/tools /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/tools /usr/src/RPM/BUILD/openbabel-2.4.1/tools/CMakeFiles/obchiral.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/tools/CMakeFiles/obchiral.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/tools/CMakeFiles/obchiral.dir/depend.internal". 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Scanning dependencies of target obchiral make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f tools/CMakeFiles/obchiral.dir/build.make tools/CMakeFiles/obchiral.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 80%] Building CXX object tools/CMakeFiles/obenergy.dir/obenergy.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/obenergy.dir/obenergy.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/tools/obenergy.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 80%] Building CXX object tools/CMakeFiles/obfit.dir/obfit.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/obfit.dir/obfit.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/tools/obfit.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 77%] Building CXX object src/formats/CMakeFiles/fastsearchformat.dir/fastsearchformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dfastsearchformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/fastsearchformat.dir/fastsearchformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/fastsearchformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/fastsearchformat.cpp: In member function 'void OpenBabel::FastSearchFormat::AddPattern(std::vector&, OpenBabel::OBMol, int)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/fastsearchformat.cpp:668:11: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] if(idx>=patternMol.NumBonds()) ~~~^~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 78%] Building CXX object src/formats/CMakeFiles/fastaformat.dir/fastaformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dfastaformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/fastaformat.dir/fastaformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/fastaformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/fastaformat.cpp: In function 'void OpenBabel::add_residue(OpenBabel::OBMol*, OpenBabel::OBResidue*, double, double, long unsigned int&, OpenBabel::ResidueRecord*, int, OpenBabel::OBAtom*&, bool, bool)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/fastaformat.cpp:387:33: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] else if (atom_count > resBondFromOffset) ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory 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Scanning dependencies of target obthermo make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f tools/CMakeFiles/obthermo.dir/build.make tools/CMakeFiles/obthermo.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 81%] Building CXX object tools/CMakeFiles/obgrep.dir/obgrep.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/obgrep.dir/obgrep.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/tools/obgrep.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 81%] Building CXX object tools/CMakeFiles/obchiral.dir/obchiral.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/obchiral.dir/obchiral.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/tools/obchiral.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 83%] Linking CXX executable ../bin/obgrep cd /usr/src/RPM/BUILD/openbabel-2.4.1/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obgrep.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -rdynamic CMakeFiles/obgrep.dir/obgrep.cpp.o -o ../bin/obgrep ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 84%] Built target obgrep make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f tools/CMakeFiles/obgen.dir/build.make tools/CMakeFiles/obgen.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/tools /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/tools /usr/src/RPM/BUILD/openbabel-2.4.1/tools/CMakeFiles/obgen.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/tools/CMakeFiles/obgen.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/tools/CMakeFiles/obgen.dir/depend.internal". 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Scanning dependencies of target obgen make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f tools/CMakeFiles/obgen.dir/build.make tools/CMakeFiles/obgen.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 82%] Building CXX object tools/CMakeFiles/obabel.dir/obabel.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/obabel.dir/obabel.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/tools/obabel.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 84%] Linking CXX executable ../bin/obchiral cd /usr/src/RPM/BUILD/openbabel-2.4.1/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obchiral.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -rdynamic CMakeFiles/obchiral.dir/obchiral.cpp.o -o ../bin/obchiral ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 84%] Built target obchiral make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f tools/CMakeFiles/babel.dir/build.make tools/CMakeFiles/babel.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/tools /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/tools /usr/src/RPM/BUILD/openbabel-2.4.1/tools/CMakeFiles/babel.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/tools/CMakeFiles/babel.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/tools/CMakeFiles/babel.dir/depend.internal". 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Scanning dependencies of target babel make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f tools/CMakeFiles/babel.dir/build.make tools/CMakeFiles/babel.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 82%] Building CXX object tools/CMakeFiles/obconformer.dir/obconformer.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/obconformer.dir/obconformer.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/tools/obconformer.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 84%] Linking CXX executable ../bin/obabel cd /usr/src/RPM/BUILD/openbabel-2.4.1/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obabel.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -rdynamic CMakeFiles/obabel.dir/obabel.cpp.o -o ../bin/obabel ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 84%] Built target obabel make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f tools/CMakeFiles/obminimize.dir/build.make tools/CMakeFiles/obminimize.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/tools /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/tools /usr/src/RPM/BUILD/openbabel-2.4.1/tools/CMakeFiles/obminimize.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/tools/CMakeFiles/obminimize.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/tools/CMakeFiles/obminimize.dir/depend.internal". 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Scanning dependencies of target obminimize make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f tools/CMakeFiles/obminimize.dir/build.make tools/CMakeFiles/obminimize.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 84%] Linking CXX executable ../bin/obconformer cd /usr/src/RPM/BUILD/openbabel-2.4.1/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obconformer.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -rdynamic CMakeFiles/obconformer.dir/obconformer.cpp.o -o ../bin/obconformer ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 84%] Built target obconformer make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f tools/CMakeFiles/obrotate.dir/build.make tools/CMakeFiles/obrotate.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/tools /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/tools /usr/src/RPM/BUILD/openbabel-2.4.1/tools/CMakeFiles/obrotate.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/tools/CMakeFiles/obrotate.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/tools/CMakeFiles/obrotate.dir/depend.internal". 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Scanning dependencies of target obsym make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f tools/CMakeFiles/obsym.dir/build.make tools/CMakeFiles/obsym.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 83%] Building CXX object tools/CMakeFiles/obthermo.dir/obthermo.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/obthermo.dir/obthermo.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/tools/obthermo.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/tools/obthermo.cpp: In function 'int main(int, char**)': /usr/src/RPM/BUILD/openbabel-2.4.1/tools/obthermo.cpp:158:18: warning: unused variable 'Rgas' [-Wunused-variable] double Rgas = 1.9872041; // cal/mol K ^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/tools/obthermo.cpp:42:10: warning: variable 'bKJ' set but not used [-Wunused-but-set-variable] bool bKJ = false; ^~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 84%] Linking CXX executable ../bin/obthermo cd /usr/src/RPM/BUILD/openbabel-2.4.1/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obthermo.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -rdynamic CMakeFiles/obthermo.dir/obthermo.cpp.o -o ../bin/obthermo ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 84%] Built target obthermo make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f tools/CMakeFiles/obspectrophore.dir/build.make tools/CMakeFiles/obspectrophore.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/tools /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/tools /usr/src/RPM/BUILD/openbabel-2.4.1/tools/CMakeFiles/obspectrophore.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/tools/CMakeFiles/obspectrophore.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/tools/CMakeFiles/obspectrophore.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/tools/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/tools/CMakeFiles/obspectrophore.dir/depend.internal". Scanning dependencies of target obspectrophore make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f tools/CMakeFiles/obspectrophore.dir/build.make tools/CMakeFiles/obspectrophore.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 84%] Building CXX object tools/CMakeFiles/obgen.dir/obgen.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/obgen.dir/obgen.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/tools/obgen.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 84%] Linking CXX executable ../bin/obgen cd /usr/src/RPM/BUILD/openbabel-2.4.1/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obgen.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -rdynamic CMakeFiles/obgen.dir/obgen.cpp.o -o ../bin/obgen ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 84%] Built target obgen make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/GUI/CMakeFiles/obgui.dir/build.make src/GUI/CMakeFiles/obgui.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 84%] Building CXX object tools/CMakeFiles/obrotate.dir/obrotate.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/obrotate.dir/obrotate.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/tools/obrotate.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/tools/obrotate.cpp: In function 'int main(int, char**)': /usr/src/RPM/BUILD/openbabel-2.4.1/tools/obrotate.cpp:154:21: warning: 'a4' may be used uninitialized in this function [-Wmaybe-uninitialized] mol.SetTorsion(a1, a2, a3, a4, angle * DEG_TO_RAD); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/tools/obrotate.cpp:149:28: warning: 'a3' may be used uninitialized in this function [-Wmaybe-uninitialized] if ( !a2->IsConnected(a3) ) { ~~~~~~~~~~~~~~~^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/tools/obrotate.cpp:149:28: warning: 'a2' may be used uninitialized in this function [-Wmaybe-uninitialized] /usr/src/RPM/BUILD/openbabel-2.4.1/tools/obrotate.cpp:154:21: warning: 'a1' may be used uninitialized in this function [-Wmaybe-uninitialized] mol.SetTorsion(a1, a2, a3, a4, angle * DEG_TO_RAD); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 84%] Linking CXX executable ../bin/obrotate cd /usr/src/RPM/BUILD/openbabel-2.4.1/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obrotate.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -rdynamic CMakeFiles/obrotate.dir/obrotate.cpp.o -o ../bin/obrotate ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 84%] Building CXX object tools/CMakeFiles/babel.dir/babel.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/babel.dir/babel.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/tools/babel.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/tools/babel.cpp: In function 'int main(int, char**)': /usr/src/RPM/BUILD/openbabel-2.4.1/tools/babel.cpp:64:8: warning: unused variable 'inGzip' [-Wunused-variable] bool inGzip = false; ^~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 84%] Built target obrotate make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f test/CMakeFiles/test_inchiwrite.dir/build.make test/CMakeFiles/test_inchiwrite.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI /usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI/CMakeFiles/obgui.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI/CMakeFiles/obgui.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI/CMakeFiles/obgui.dir/depend.internal". 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Scanning dependencies of target obgui make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f src/GUI/CMakeFiles/obgui.dir/build.make src/GUI/CMakeFiles/obgui.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/test /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/test /usr/src/RPM/BUILD/openbabel-2.4.1/test/CMakeFiles/test_inchiwrite.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/test/CMakeFiles/test_inchiwrite.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/test/CMakeFiles/test_inchiwrite.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/test/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/test/CMakeFiles/test_inchiwrite.dir/depend.internal". Scanning dependencies of target test_inchiwrite make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f test/CMakeFiles/test_inchiwrite.dir/build.make test/CMakeFiles/test_inchiwrite.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 84%] Linking CXX executable ../bin/babel cd /usr/src/RPM/BUILD/openbabel-2.4.1/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/babel.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -rdynamic CMakeFiles/babel.dir/babel.cpp.o -o ../bin/babel ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 84%] Building CXX object tools/CMakeFiles/obminimize.dir/obminimize.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/obminimize.dir/obminimize.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/tools/obminimize.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 86%] Built target babel make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f test/CMakeFiles/test_runner.dir/build.make test/CMakeFiles/test_runner.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 84%] Building CXX object tools/CMakeFiles/obsym.dir/obsym.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/obsym.dir/obsym.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/tools/obsym.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/test /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/test /usr/src/RPM/BUILD/openbabel-2.4.1/test/CMakeFiles/test_runner.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/test/CMakeFiles/test_runner.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/test/CMakeFiles/test_runner.dir/depend.internal". 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Scanning dependencies of target test_runner make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f test/CMakeFiles/test_runner.dir/build.make test/CMakeFiles/test_runner.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 87%] Linking CXX executable ../bin/obminimize cd /usr/src/RPM/BUILD/openbabel-2.4.1/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obminimize.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -rdynamic CMakeFiles/obminimize.dir/obminimize.cpp.o -o ../bin/obminimize ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 87%] Built target obminimize make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f test/CMakeFiles/roundtrip.dir/build.make test/CMakeFiles/roundtrip.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/test /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/test /usr/src/RPM/BUILD/openbabel-2.4.1/test/CMakeFiles/roundtrip.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/test/CMakeFiles/roundtrip.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/test/CMakeFiles/roundtrip.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/test/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/test/CMakeFiles/roundtrip.dir/depend.internal". Scanning dependencies of target roundtrip make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f test/CMakeFiles/roundtrip.dir/build.make test/CMakeFiles/roundtrip.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 87%] Building CXX object test/CMakeFiles/test_runner.dir/test_runner.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/src/RPM/BUILD/openbabel-2.4.1/test -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/usr/src/RPM/BUILD/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/usr/src/RPM/BUILD/openbabel-2.4.1/lib//\"" -DTESTDIR=/usr/src/RPM/BUILD/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/test_runner.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/test/test_runner.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 87%] Linking CXX executable ../bin/obsym cd /usr/src/RPM/BUILD/openbabel-2.4.1/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obsym.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -rdynamic CMakeFiles/obsym.dir/obsym.cpp.o -o ../bin/obsym ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 87%] Built target obsym make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f scripts/CMakeFiles/bindings_python.dir/build.make scripts/CMakeFiles/bindings_python.dir/depend make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 84%] Building CXX object tools/CMakeFiles/obprop.dir/obprop.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/obprop.dir/obprop.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/tools/obprop.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' cd /usr/src/RPM/BUILD/openbabel-2.4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/scripts /usr/src/RPM/BUILD/openbabel-2.4.1 /usr/src/RPM/BUILD/openbabel-2.4.1/scripts /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/CMakeFiles/bindings_python.dir/DependInfo.cmake --color= Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/scripts/CMakeFiles/bindings_python.dir/DependInfo.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/scripts/CMakeFiles/bindings_python.dir/depend.internal". Dependee "/usr/src/RPM/BUILD/openbabel-2.4.1/scripts/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/usr/src/RPM/BUILD/openbabel-2.4.1/scripts/CMakeFiles/bindings_python.dir/depend.internal". Scanning dependencies of target bindings_python make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make -f scripts/CMakeFiles/bindings_python.dir/build.make scripts/CMakeFiles/bindings_python.dir/build make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 87%] Linking CXX executable ../bin/obprop cd /usr/src/RPM/BUILD/openbabel-2.4.1/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obprop.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -rdynamic CMakeFiles/obprop.dir/obprop.cpp.o -o ../bin/obprop ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 87%] Built target obprop make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 85%] Building CXX object test/CMakeFiles/test_inchiwrite.dir/inchiwrite.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/src/RPM/BUILD/openbabel-2.4.1/test -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/usr/src/RPM/BUILD/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/usr/src/RPM/BUILD/openbabel-2.4.1/lib//\"" -DTESTDIR=/usr/src/RPM/BUILD/openbabel-2.4.1/test -o CMakeFiles/test_inchiwrite.dir/inchiwrite.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/test/inchiwrite.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 87%] Building CXX object test/CMakeFiles/roundtrip.dir/roundtrip.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/src/RPM/BUILD/openbabel-2.4.1/test -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/usr/src/RPM/BUILD/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/usr/src/RPM/BUILD/openbabel-2.4.1/lib//\"" -DTESTDIR=/usr/src/RPM/BUILD/openbabel-2.4.1/test -o CMakeFiles/roundtrip.dir/roundtrip.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/test/roundtrip.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 88%] Linking CXX executable ../bin/roundtrip cd /usr/src/RPM/BUILD/openbabel-2.4.1/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/roundtrip.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -rdynamic CMakeFiles/roundtrip.dir/roundtrip.cpp.o -o ../bin/roundtrip ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 88%] Built target roundtrip make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 88%] Building CXX object test/CMakeFiles/test_inchiwrite.dir/__/src/formats/getinchi.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/src/RPM/BUILD/openbabel-2.4.1/test -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/usr/src/RPM/BUILD/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/usr/src/RPM/BUILD/openbabel-2.4.1/lib//\"" -DTESTDIR=/usr/src/RPM/BUILD/openbabel-2.4.1/test -o CMakeFiles/test_inchiwrite.dir/__/src/formats/getinchi.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/getinchi.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 84%] Building CXX object tools/CMakeFiles/obspectrophore.dir/obspectrophore.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/obspectrophore.dir/obspectrophore.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/tools/obspectrophore.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 88%] Linking CXX executable ../bin/test_inchiwrite cd /usr/src/RPM/BUILD/openbabel-2.4.1/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_inchiwrite.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -rdynamic CMakeFiles/test_inchiwrite.dir/inchiwrite.cpp.o CMakeFiles/test_inchiwrite.dir/__/src/formats/getinchi.cpp.o -o ../bin/test_inchiwrite ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 89%] Built target test_inchiwrite make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 89%] Linking CXX executable ../bin/obspectrophore cd /usr/src/RPM/BUILD/openbabel-2.4.1/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obspectrophore.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -rdynamic CMakeFiles/obspectrophore.dir/obspectrophore.cpp.o -o ../bin/obspectrophore ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 89%] Built target obspectrophore make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 88%] Building CXX object test/CMakeFiles/test_runner.dir/automorphismtest.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/src/RPM/BUILD/openbabel-2.4.1/test -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/usr/src/RPM/BUILD/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/usr/src/RPM/BUILD/openbabel-2.4.1/lib//\"" -DTESTDIR=/usr/src/RPM/BUILD/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/automorphismtest.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/test/automorphismtest.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/test/automorphismtest.cpp: In function 'bool doAutomorphismTest(OpenBabel::OBMol&, int)': /usr/src/RPM/BUILD/openbabel-2.4.1/test/automorphismtest.cpp:15:20: warning: comparison of integer expressions of different signedness: 'std::vector > >::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] return (G.size() == numAutomorphisms); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 88%] Building CXX object test/CMakeFiles/test_runner.dir/buildertest.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/src/RPM/BUILD/openbabel-2.4.1/test -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/usr/src/RPM/BUILD/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/usr/src/RPM/BUILD/openbabel-2.4.1/lib//\"" -DTESTDIR=/usr/src/RPM/BUILD/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/buildertest.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/test/buildertest.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/test/buildertest.cpp:15:21: warning: 'failed' defined but not used [-Wunused-variable] static unsigned int failed = 0; ^~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/canonconsistenttest.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/src/RPM/BUILD/openbabel-2.4.1/test -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/usr/src/RPM/BUILD/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/usr/src/RPM/BUILD/openbabel-2.4.1/lib//\"" -DTESTDIR=/usr/src/RPM/BUILD/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/canonconsistenttest.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/test/canonconsistenttest.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/canonstabletest.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/src/RPM/BUILD/openbabel-2.4.1/test -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/usr/src/RPM/BUILD/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/usr/src/RPM/BUILD/openbabel-2.4.1/lib//\"" -DTESTDIR=/usr/src/RPM/BUILD/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/canonstabletest.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/test/canonstabletest.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/carspacegrouptest.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/src/RPM/BUILD/openbabel-2.4.1/test -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/usr/src/RPM/BUILD/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/usr/src/RPM/BUILD/openbabel-2.4.1/lib//\"" -DTESTDIR=/usr/src/RPM/BUILD/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/carspacegrouptest.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/test/carspacegrouptest.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 77%] Building CXX object src/formats/CMakeFiles/smilesformat.dir/smilesformat.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -Dsmilesformat_EXPORTS -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/include/cairo -I/usr/src/RPM/BUILD/openbabel-2.4.1/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -fPIC -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/smilesformat.dir/smilesformat.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smilesformat.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smilesformat.cpp: In member function 'bool OpenBabel::OBSmilesParser::ParseSmiles(OpenBabel::OBMol&)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smilesformat.cpp:587:15: warning: variable 'atom' set but not used [-Wunused-but-set-variable] OBAtom* atom; ^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smilesformat.cpp: In member function 'std::vector OpenBabel::OBMol2Cansmi::GetCanonClosureDigits(OpenBabel::OBAtom*, OpenBabel::OBBitVec&, std::vector&)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smilesformat.cpp:3482:11: warning: unused variable 'bo' [-Wunused-variable] int bo = (bond1->IsAromatic())? 1 : bond1->GetBO(); // CJ: why was this line added? bo is never used? ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smilesformat.cpp: In member function 'void OpenBabel::OBMol2Cansmi::CreateFragCansmiString(OpenBabel::OBMol&, OpenBabel::OBBitVec&, bool, char*)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smilesformat.cpp:4066:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] for (int i=0; i::size_type' {aka 'unsigned int'} [-Wsign-compare] for (int i=0; i&, std::vector&, char*, bool)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smilesformat.cpp:2989:19: warning: '%d' directive writing between 1 and 5 bytes into a region of size 4 [-Wformat-overflow=] sprintf(iso,"%d",atom->GetIsotope()); ^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smilesformat.cpp:2989:19: note: directive argument in the range [1, 65535] In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6400, from /usr/include/c++/8/string:52, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/mol.h:35, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/obmolecformat.h:37, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smilesformat.cpp:22: /usr/include/bits/stdio2.h:33:34: note: '__builtin___sprintf_chk' output between 2 and 6 bytes into a destination of size 4 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smilesformat.cpp:3037:26: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(tcount,"%d", hcount); ^~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6400, from /usr/include/c++/8/string:52, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/mol.h:35, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/obmolecformat.h:37, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats/smilesformat.cpp:22: /usr/include/bits/stdio2.h:33:34: note: '__builtin___sprintf_chk' output between 2 and 11 bytes into a destination of size 10 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 90%] Linking CXX shared module ../../lib/smilesformat.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/smilesformat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../../lib/smilesformat.so CMakeFiles/smilesformat.dir/smilesformat.cpp.o -lm -ldl -lz -lcairo ../../lib/libinchi.so.0.4.1 -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 90%] Built target smilesformat make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 87%] Building CXX object test/CMakeFiles/test_runner.dir/aligntest.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/src/RPM/BUILD/openbabel-2.4.1/test -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/usr/src/RPM/BUILD/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/usr/src/RPM/BUILD/openbabel-2.4.1/lib//\"" -DTESTDIR=/usr/src/RPM/BUILD/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/aligntest.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/test/aligntest.cpp In file included from /usr/include/eigen2/Eigen/Core:103, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/math/align.h:26, from /usr/src/RPM/BUILD/openbabel-2.4.1/test/aligntest.cpp:3: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/cifspacegrouptest.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/src/RPM/BUILD/openbabel-2.4.1/test -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/usr/src/RPM/BUILD/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/usr/src/RPM/BUILD/openbabel-2.4.1/lib//\"" -DTESTDIR=/usr/src/RPM/BUILD/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/cifspacegrouptest.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/test/cifspacegrouptest.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/gziptest.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/src/RPM/BUILD/openbabel-2.4.1/test -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/usr/src/RPM/BUILD/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/usr/src/RPM/BUILD/openbabel-2.4.1/lib//\"" -DTESTDIR=/usr/src/RPM/BUILD/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/gziptest.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/test/gziptest.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 86%] Building CXX object src/GUI/CMakeFiles/obgui.dir/OBGUI.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI/. -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/obgui.dir/OBGUI.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI/OBGUI.cpp In file included from /usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI/OBGUI.cpp:26: /usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI/./selformats.h: In member function 'bool ActiveFormats::Add(wxString&)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI/./selformats.h:82:52: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] return (ActiveFormatsString.find(format+_T(';')) != -1); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI/OBGUI.cpp: In member function 'virtual bool OBGUIApp::OnInit()': /usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI/OBGUI.cpp:129:21: warning: unused variable 'splash' [-Wunused-variable] wxSplashScreen* splash = new wxSplashScreen(bitmap, ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI/OBGUI.cpp: In member function 'void OBGUIFrame::DisplayInputFiles(wxArrayString)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI/OBGUI.cpp:766:12: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] for(i=0;iGetCount();iSel++) ~~~~^~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI/OBGUI.cpp: In member function 'wxString OBGUIFrame::ShortenedPath(const wxString&, const wxWindow&, int)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI/OBGUI.cpp:934:10: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] if(pos1==wxNOT_FOUND || pos1+1 == path.length()) return path; ^ /usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI/OBGUI.cpp:936:10: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] if(pos1==wxNOT_FOUND || pos1+1 == path.length()) return path; ^ /usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI/OBGUI.cpp:943:12: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] if(pos2==wxNOT_FOUND || pos2+1 == tpath.length()) return path; ^ /usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI/OBGUI.cpp:946:46: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] if(tpath.find_first_of(_T("/\\"), pos2+1)==wxNOT_FOUND) return path; ^ /usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI/OBGUI.cpp: In member function 'void OBGUIFrame::GetAvailableFormats()': /usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI/OBGUI.cpp:1000:13: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [-Wsign-compare] if(pos!=wxString::npos) ~~~^~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI/OBGUI.cpp:1005:11: warning: variable 'n' set but not used [-Wunused-but-set-variable] int n; ^ /usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI/OBGUI.cpp: In member function 'void OBGUIFrame::MakePluginsMenu()': /usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI/OBGUI.cpp:1101:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] for(int itop=0; itop < topvec.size(); ++itop) ~~~~~^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI/OBGUI.cpp:1109:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] for(int isub=0; isub < subvec.size(); ++isub) ~~~~~^~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI/OBGUI.cpp: In member function 'void CFilenames::OnKeyPress(wxKeyEvent&)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI/OBGUI.cpp:1187:50: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] if(nameWithWildcard.find_first_of(_T("*?"))==wxNOT_FOUND) ^ /usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI/OBGUI.cpp:1203:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] for(i=0;i(0) : report_error(#exp, __FILE__, __LINE__, FUNCTION_SIGNATURE, false) ) ^~~ /usr/src/RPM/BUILD/openbabel-2.4.1/test/graphsymtest.cpp:109:9: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] if (n != numberOfClasses) { ~~^~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/lssrtest.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/src/RPM/BUILD/openbabel-2.4.1/test -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/usr/src/RPM/BUILD/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/usr/src/RPM/BUILD/openbabel-2.4.1/lib//\"" -DTESTDIR=/usr/src/RPM/BUILD/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/lssrtest.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/test/lssrtest.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/test/lssrtest.cpp: In function 'bool verifyLSSR(const string&, const LSSR&)': /usr/src/RPM/BUILD/openbabel-2.4.1/test/lssrtest.cpp:170:8: warning: unused variable 'fail' [-Wunused-variable] bool fail = false; ^~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 91%] Building CXX object src/GUI/CMakeFiles/obgui.dir/stdwx.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI/. -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/obgui.dir/stdwx.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI/stdwx.cpp In file included from /usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI/./stdwx.h:50, from /usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI/stdwx.cpp:1: /usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI/./babel.xpm:2:20: warning: 'sample_xpm' defined but not used [-Wunused-variable] static const char *sample_xpm[] = { ^~~~~~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/multicmltest.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/src/RPM/BUILD/openbabel-2.4.1/test -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/usr/src/RPM/BUILD/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/usr/src/RPM/BUILD/openbabel-2.4.1/lib//\"" -DTESTDIR=/usr/src/RPM/BUILD/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/multicmltest.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/test/multicmltest.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/regressionstest.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/src/RPM/BUILD/openbabel-2.4.1/test -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/usr/src/RPM/BUILD/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/usr/src/RPM/BUILD/openbabel-2.4.1/lib//\"" -DTESTDIR=/usr/src/RPM/BUILD/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/regressionstest.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/test/regressionstest.cpp In file included from /usr/src/RPM/BUILD/openbabel-2.4.1/test/regressionstest.cpp:1: /usr/src/RPM/BUILD/openbabel-2.4.1/test/obtest.h: In instantiation of 'void ob_compare(T1, T2, const char*, const char*, int, const char*) [with T1 = unsigned int; T2 = int]': /usr/src/RPM/BUILD/openbabel-2.4.1/test/regressionstest.cpp:102:3: required from here /usr/src/RPM/BUILD/openbabel-2.4.1/test/obtest.h:22:11: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] if (!(a == b)) ~~~^~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/isomorphismtest.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/src/RPM/BUILD/openbabel-2.4.1/test -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/usr/src/RPM/BUILD/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/usr/src/RPM/BUILD/openbabel-2.4.1/lib//\"" -DTESTDIR=/usr/src/RPM/BUILD/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/isomorphismtest.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/test/isomorphismtest.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/test/isomorphismtest.cpp:112:3: warning: multi-line comment [-Wcomment] // /\ /\ /\ ^ /usr/src/RPM/BUILD/openbabel-2.4.1/test/isomorphismtest.cpp:163:3: warning: multi-line comment [-Wcomment] // /\ /\ /\ ^ /usr/src/RPM/BUILD/openbabel-2.4.1/test/isomorphismtest.cpp:185:3: warning: multi-line comment [-Wcomment] // /\ /\ /\ ^ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/rotortest.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/src/RPM/BUILD/openbabel-2.4.1/test -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/usr/src/RPM/BUILD/openbabel-2.4.1/test/files/\"" -DFORMATDIR="\"/usr/src/RPM/BUILD/openbabel-2.4.1/lib//\"" -DTESTDIR=/usr/src/RPM/BUILD/openbabel-2.4.1/test -o CMakeFiles/test_runner.dir/rotortest.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/test/rotortest.cpp make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 92%] Building CXX object src/GUI/CMakeFiles/obgui.dir/optswx.cpp.o cd /usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -I/usr/src/RPM/BUILD/openbabel-2.4.1/include -I/usr/src/RPM/BUILD/openbabel-2.4.1/data -I/usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI/. -isystem /usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8 -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -DOB_MODULE_PATH="\"/usr/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/obgui.dir/optswx.cpp.o -c /usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI/optswx.cpp /usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI/optswx.cpp: In member function 'bool DynOptionswx::Construct(const char*, const char*, int)': /usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI/optswx.cpp:223:16: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if(pdef=strcasestr(pCaption,"default")) ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/src/GUI/optswx.cpp:226:17: warning: unused variable 'tok' [-Wunused-variable] char* tok=strtok(pdef," :-\t::type Packet; ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_SwigPyIterator___sub__(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:7799:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_1; return _wrap_SwigPyIterator___sub____SWIG_1(self, argc, argv);} check_1: if (argc == 2) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:7799:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_1; return _wrap_SwigPyIterator___sub____SWIG_1(self, argc, argv);} check_1: if (argc == 2) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_vectorInt___setitem__(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:8051:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_2; return _wrap_vectorInt___setitem____SWIG_0(self, argc, argv);} check_2: if (argc == 3) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:8051:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_2; return _wrap_vectorInt___setitem____SWIG_0(self, argc, argv);} check_2: if (argc == 3) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new_vectorInt__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:8074:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res1)) delete arg1; return resultobj; fail: if (SWIG_IsNewObj(res1)) delete arg1; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:8074:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res1)) delete arg1; return resultobj; fail: if (SWIG_IsNewObj(res1)) delete arg1; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new_vectorUnsignedInt__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:8402:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res1)) delete arg1; return resultobj; fail: if (SWIG_IsNewObj(res1)) delete arg1; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:8402:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res1)) delete arg1; return resultobj; fail: if (SWIG_IsNewObj(res1)) delete arg1; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_vectorvInt___setitem____SWIG_2(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:8710:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res3)) delete arg3; return resultobj; fail: if (SWIG_IsNewObj(res3)) delete arg3; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:8710:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res3)) delete arg3; return resultobj; fail: if (SWIG_IsNewObj(res3)) delete arg3; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new_vectorvInt__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:8740:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res1)) delete arg1; return resultobj; fail: if (SWIG_IsNewObj(res1)) delete arg1; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:8740:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res1)) delete arg1; return resultobj; fail: if (SWIG_IsNewObj(res1)) delete arg1; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new_vectorvInt__SWIG_3(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:8765:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:8765:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_vectorDouble___setitem__(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:9048:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_2; return _wrap_vectorDouble___setitem____SWIG_0(self, argc, argv);} check_2: if (argc == 3) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:9048:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_2; return _wrap_vectorDouble___setitem____SWIG_0(self, argc, argv);} check_2: if (argc == 3) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new_vectorDouble__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:9071:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res1)) delete arg1; return resultobj; fail: if (SWIG_IsNewObj(res1)) delete arg1; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:9071:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res1)) delete arg1; return resultobj; fail: if (SWIG_IsNewObj(res1)) delete arg1; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new_vectorULong__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:9401:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res1)) delete arg1; return resultobj; fail: if (SWIG_IsNewObj(res1)) delete arg1; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:9401:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res1)) delete arg1; return resultobj; fail: if (SWIG_IsNewObj(res1)) delete arg1; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_vectorString___setitem____SWIG_2(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:9703:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res3)) delete arg3; return resultobj; fail: if (SWIG_IsNewObj(res3)) delete arg3; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:9703:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res3)) delete arg3; return resultobj; fail: if (SWIG_IsNewObj(res3)) delete arg3; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new_vectorString__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:9733:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res1)) delete arg1; return resultobj; fail: if (SWIG_IsNewObj(res1)) delete arg1; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:9733:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res1)) delete arg1; return resultobj; fail: if (SWIG_IsNewObj(res1)) delete arg1; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new_vectorString__SWIG_3(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:9756:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:9756:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new_vectorVector3__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:10072:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res1)) delete arg1; return resultobj; fail: if (SWIG_IsNewObj(res1)) delete arg1; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:10072:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res1)) delete arg1; return resultobj; fail: if (SWIG_IsNewObj(res1)) delete arg1; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_vectorvVector3___setitem____SWIG_2(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:10403:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res3)) delete arg3; return resultobj; fail: if (SWIG_IsNewObj(res3)) delete arg3; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:10403:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res3)) delete arg3; return resultobj; fail: if (SWIG_IsNewObj(res3)) delete arg3; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new_vectorvVector3__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:10435:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res1)) delete arg1; return resultobj; fail: if (SWIG_IsNewObj(res1)) delete arg1; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:10435:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res1)) delete arg1; return resultobj; fail: if (SWIG_IsNewObj(res1)) delete arg1; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new_vectorvVector3__SWIG_3(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:10460:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:10460:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new_vectorOBMol__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:10775:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res1)) delete arg1; return resultobj; fail: if (SWIG_IsNewObj(res1)) delete arg1; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:10775:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res1)) delete arg1; return resultobj; fail: if (SWIG_IsNewObj(res1)) delete arg1; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new_vectorOBBond__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:11114:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res1)) delete arg1; return resultobj; fail: if (SWIG_IsNewObj(res1)) delete arg1; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:11114:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res1)) delete arg1; return resultobj; fail: if (SWIG_IsNewObj(res1)) delete arg1; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new_vectorOBResidue__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:11456:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res1)) delete arg1; return resultobj; fail: if (SWIG_IsNewObj(res1)) delete arg1; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:11456:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res1)) delete arg1; return resultobj; fail: if (SWIG_IsNewObj(res1)) delete arg1; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new_vectorOBRing__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:11795:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res1)) delete arg1; return resultobj; fail: if (SWIG_IsNewObj(res1)) delete arg1; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:11795:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res1)) delete arg1; return resultobj; fail: if (SWIG_IsNewObj(res1)) delete arg1; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new_vectorpOBRing__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:12133:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res1)) delete arg1; return resultobj; fail: if (SWIG_IsNewObj(res1)) delete arg1; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:12133:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res1)) delete arg1; return resultobj; fail: if (SWIG_IsNewObj(res1)) delete arg1; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new_vectorpOBGenericData__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:12479:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res1)) delete arg1; return resultobj; fail: if (SWIG_IsNewObj(res1)) delete arg1; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:12479:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res1)) delete arg1; return resultobj; fail: if (SWIG_IsNewObj(res1)) delete arg1; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new_vectorpOBInternalCoord__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:12843:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res1)) delete arg1; return resultobj; fail: if (SWIG_IsNewObj(res1)) delete arg1; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:12843:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res1)) delete arg1; return resultobj; fail: if (SWIG_IsNewObj(res1)) delete arg1; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new_pairUIntUInt__SWIG_2(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:12926:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res1)) delete arg1; return resultobj; fail: if (SWIG_IsNewObj(res1)) delete arg1; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:12926:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res1)) delete arg1; return resultobj; fail: if (SWIG_IsNewObj(res1)) delete arg1; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_vpairUIntUInt___setitem____SWIG_2(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:13271:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res3)) delete arg3; return resultobj; fail: if (SWIG_IsNewObj(res3)) delete arg3; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:13271:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res3)) delete arg3; return resultobj; fail: if (SWIG_IsNewObj(res3)) delete arg3; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new_vpairUIntUInt__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:13302:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res1)) delete arg1; return resultobj; fail: if (SWIG_IsNewObj(res1)) delete arg1; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:13302:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res1)) delete arg1; return resultobj; fail: if (SWIG_IsNewObj(res1)) delete arg1; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new_vpairUIntUInt__SWIG_3(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:13327:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:13327:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_vvpairUIntUInt___setitem____SWIG_2(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:13641:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res3)) delete arg3; return resultobj; fail: if (SWIG_IsNewObj(res3)) delete arg3; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:13641:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res3)) delete arg3; return resultobj; fail: if (SWIG_IsNewObj(res3)) delete arg3; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_vvpairUIntUInt_append(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:13685:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:13685:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new_vvpairUIntUInt__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:13705:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res1)) delete arg1; return resultobj; fail: if (SWIG_IsNewObj(res1)) delete arg1; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:13705:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res1)) delete arg1; return resultobj; fail: if (SWIG_IsNewObj(res1)) delete arg1; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new_vvpairUIntUInt__SWIG_3(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:13918:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:13918:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_vvpairUIntUInt_push_back(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:13949:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:13949:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_vvpairUIntUInt_assign(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:13995:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res3)) delete arg3; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:13995:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res3)) delete arg3; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_vvpairUIntUInt_resize__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:14017:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res3)) delete arg3; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:14017:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res3)) delete arg3; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_vvpairUIntUInt_insert__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:14056:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res3)) delete arg3; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:14056:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res3)) delete arg3; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_vvpairUIntUInt_insert__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:14087:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res4)) delete arg4; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:14087:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res4)) delete arg4; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBGlobalDataBase_SetReadDirectory(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:14380:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:14380:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBGlobalDataBase_SetEnvironmentVariable(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:14391:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:14391:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBGlobalDataBase_ParseLine(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:14402:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:14402:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new_OBElement__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:14458:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:14458:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBElementTable_GetAtomicNum__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:14615:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:14615:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBElementTable_GetAtomicNum__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:14632:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:14632:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBTypeTable_SetFromType(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:15091:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:15091:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBTypeTable_SetToType(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:15103:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:15103:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBTypeTable_Translate__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:15118:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc3 == SWIG_NEWOBJ) delete[] buf3; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:15118:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc3 == SWIG_NEWOBJ) delete[] buf3; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:15119:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc3 == SWIG_NEWOBJ) delete[] buf3; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:15119:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc3 == SWIG_NEWOBJ) delete[] buf3; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBTypeTable_Translate__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:15138:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res3)) delete arg3; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:15138:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res3)) delete arg3; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBResidueData_SetResName(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:15206:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:15206:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBResidueData_LookupBO__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:15219:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:15219:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBResidueData_LookupBO__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:15238:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res3)) delete arg3; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:15238:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res3)) delete arg3; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:15239:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res3)) delete arg3; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:15239:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res3)) delete arg3; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBResidueData_LookupType(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:15270:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:15270:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new_vector3(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:15665:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_3; return _wrap_new_vector3__SWIG_5(self, argc, argv);} check_3: if (argc == 1) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:15665:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_3; return _wrap_new_vector3__SWIG_5(self, argc, argv);} check_3: if (argc == 1) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_vector3___iadd__(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:15863:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_1; return _wrap_vector3___iadd____SWIG_0(self, argc, argv);} check_1: if (argc == 2) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:15863:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_1; return _wrap_vector3___iadd____SWIG_0(self, argc, argv);} check_1: if (argc == 2) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_vector3___isub__(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:15882:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_1; return _wrap_vector3___isub____SWIG_0(self, argc, argv);} check_1: if (argc == 2) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:15882:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_1; return _wrap_vector3___isub____SWIG_0(self, argc, argv);} check_1: if (argc == 2) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_vector3___imul__(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:15931:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_1; return _wrap_vector3___imul____SWIG_1(self, argc, argv);} check_1: if (argc == 2) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:15931:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_1; return _wrap_vector3___imul____SWIG_1(self, argc, argv);} check_1: if (argc == 2) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap___mul__(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:16256:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_1; { { int res = SWIG_AsVal_double(argv[1], NULL); _v = SWIG_CheckState(res); } } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:16256:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_1; { { int res = SWIG_AsVal_double(argv[1], NULL); _v = SWIG_CheckState(res); } } ^ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:16257:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_1; return _wrap___mul____SWIG_1(self, argc, argv);} check_1: if (argc == 2) { int _v = 0; { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:16257:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_1; return _wrap___mul____SWIG_1(self, argc, argv);} check_1: if (argc == 2) { int _v = 0; { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:16259:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_2; return _wrap___mul____SWIG_2(self, argc, argv);} check_2: if (argc == 2) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:16259:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_2; return _wrap___mul____SWIG_2(self, argc, argv);} check_2: if (argc == 2) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new_transform3d(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:16928:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_3; { int res = SWIG_ConvertPtr(argv[1], 0, SWIGTYPE_p_OpenBabel__vector3, 0); _v = SWIG_CheckState(res);} ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:16928:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_3; { int res = SWIG_ConvertPtr(argv[1], 0, SWIGTYPE_p_OpenBabel__vector3, 0); _v = SWIG_CheckState(res);} ^ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:16929:6: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_3; return _wrap_new_transform3d__SWIG_1(self, argc, argv);} check_3: if (argc == 2) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:16929:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_3; return _wrap_new_transform3d__SWIG_1(self, argc, argv);} check_3: if (argc == 2) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_transform3d___mul__(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:16971:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_1; return _wrap_transform3d___mul____SWIG_1(self, argc, argv);} check_1: if (argc == 2) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:16971:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_1; return _wrap_transform3d___mul____SWIG_1(self, argc, argv);} check_1: if (argc == 2) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_SpaceGroup_SetHMName__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:17037:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:17037:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_SpaceGroup_SetHMName__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:17049:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:17049:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_SpaceGroup_SetHallName__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:17067:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:17067:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_SpaceGroup_SetHallName__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:17079:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:17079:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_SpaceGroup_AddTransform(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:17111:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:17111:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_SpaceGroup_GetSpaceGroup__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:17200:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return resultobj; fail: if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:17200:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return resultobj; fail: if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_SpaceGroup_GetSpaceGroup__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:17210:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res1)) delete arg1; return resultobj; fail: if (SWIG_IsNewObj(res1)) delete arg1; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:17210:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res1)) delete arg1; return resultobj; fail: if (SWIG_IsNewObj(res1)) delete arg1; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBGenericData_SetAttribute(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:17371:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:17371:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBBase_SetTitle(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:17498:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:17498:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBBase_HasData__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:17511:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:17511:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBBase_HasData__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:17522:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:17522:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBBase_DeleteData__SWIG_3(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:17590:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:17590:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBBase_DeleteData(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:17599:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_3; return _wrap_OBBase_DeleteData__SWIG_0(self, argc, argv);} check_3: if (argc == 2) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:17599:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_3; return _wrap_OBBase_DeleteData__SWIG_0(self, argc, argv);} check_3: if (argc == 2) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBBase_GetData__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:17648:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:17648:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBBase_GetData__SWIG_2(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:17660:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:17660:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBCommentData_SetData__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:17776:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:17776:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBCommentData_SetData__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:17786:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:17786:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBPairData_SetValue__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:18002:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:18002:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBPairData_SetValue__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:18014:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:18014:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBSetData_GetData__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:18084:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:18084:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBSetData_GetData__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:18097:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:18097:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBUnitCell_SetSpaceGroup(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:18534:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_2; return _wrap_OBUnitCell_SetSpaceGroup__SWIG_2(self, argc, argv);} check_2: if (argc == 2) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:18534:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_2; return _wrap_OBUnitCell_SetSpaceGroup__SWIG_2(self, argc, argv);} check_2: if (argc == 2) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBVibrationData_SetData__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:20135:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res4)) delete arg4; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:20135:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res4)) delete arg4; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:20136:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res3)) delete arg3; if (SWIG_IsNewObj(res4)) delete arg4; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:20136:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res3)) delete arg3; if (SWIG_IsNewObj(res4)) delete arg4; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBVibrationData_SetData__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:20169:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res4)) delete arg4; if (SWIG_IsNewObj(res5)) delete arg5; return resultobj; fail: ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:20169:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res4)) delete arg4; if (SWIG_IsNewObj(res5)) delete arg5; return resultobj; fail: ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:20170:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; if (SWIG_IsNewObj(res3)) delete arg3; if (SWIG_IsNewObj(res4)) delete arg4; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:20170:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; if (SWIG_IsNewObj(res3)) delete arg3; if (SWIG_IsNewObj(res4)) delete arg4; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:20171:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res5)) delete arg5; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:20171:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res5)) delete arg5; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBDOSData_SetData(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:20282:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res5)) delete arg5; return resultobj; fail: if (SWIG_IsNewObj(res3)) delete arg3; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:20282:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res5)) delete arg5; return resultobj; fail: if (SWIG_IsNewObj(res3)) delete arg3; ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:20283:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res4)) delete arg4; if (SWIG_IsNewObj(res5)) delete arg5; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:20283:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res4)) delete arg4; if (SWIG_IsNewObj(res5)) delete arg5; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBElectronicTransitionData_SetEDipole(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:20663:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:20663:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBElectronicTransitionData_SetRotatoryStrengthsVelocity(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:20679:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:20679:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBElectronicTransitionData_SetRotatoryStrengthsLength(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:20695:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:20695:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBGridData_GetAxes(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:21230:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_1; { void *vptr = 0; int res = SWIG_ConvertPtr(argv[2], &vptr, SWIGTYPE_p_double, 0); ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:21230:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_1; { void *vptr = 0; int res = SWIG_ConvertPtr(argv[2], &vptr, SWIGTYPE_p_double, 0); ^ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBGridData_SetLimits(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:21472:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_1; { int res = SWIG_ConvertPtr(argv[2], 0, SWIGTYPE_p_OpenBabel__vector3, 0); _v = SWIG_CheckState(res);} ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:21472:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_1; { int res = SWIG_ConvertPtr(argv[2], 0, SWIGTYPE_p_OpenBabel__vector3, 0); _v = SWIG_CheckState(res);} ^ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:21473:6: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_1; { int res = SWIG_ConvertPtr(argv[3], 0, SWIGTYPE_p_OpenBabel__vector3, 0); ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:21473:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_1; { int res = SWIG_ConvertPtr(argv[3], 0, SWIGTYPE_p_OpenBabel__vector3, 0); ^ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:21476:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_1; return _wrap_OBGridData_SetLimits__SWIG_0(self, argc, argv);} check_1: if (argc == 5) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:21476:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_1; return _wrap_OBGridData_SetLimits__SWIG_0(self, argc, argv);} check_1: if (argc == 5) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBGridData_SetValues(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:21514:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:21514:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_CharPtrLess___call__(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:21930:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc3 == SWIG_NEWOBJ) delete[] buf3; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:21930:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc3 == SWIG_NEWOBJ) delete[] buf3; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:21931:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc3 == SWIG_NEWOBJ) delete[] buf3; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:21931:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc3 == SWIG_NEWOBJ) delete[] buf3; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBPlugin_Display__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:21997:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc4 == SWIG_NEWOBJ) delete[] buf4; return resultobj; fail: if (alloc3 == SWIG_NEWOBJ) delete[] buf3; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:21997:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc4 == SWIG_NEWOBJ) delete[] buf4; return resultobj; fail: if (alloc3 == SWIG_NEWOBJ) delete[] buf3; ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:21998:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc4 == SWIG_NEWOBJ) delete[] buf4; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:21998:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc4 == SWIG_NEWOBJ) delete[] buf4; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBPlugin_Display__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22015:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc3 == SWIG_NEWOBJ) delete[] buf3; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22015:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc3 == SWIG_NEWOBJ) delete[] buf3; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBPlugin_MakeInstance(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22038:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22038:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBPlugin_GetPlugin(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22058:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc1 == SWIG_NEWOBJ) delete[] buf1; if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22058:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc1 == SWIG_NEWOBJ) delete[] buf1; if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22059:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc1 == SWIG_NEWOBJ) delete[] buf1; if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22059:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc1 == SWIG_NEWOBJ) delete[] buf1; if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBPlugin_ListAsVector(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22085:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc1 == SWIG_NEWOBJ) delete[] buf1; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22085:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc1 == SWIG_NEWOBJ) delete[] buf1; ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22086:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22086:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBPlugin_List__SWIG_2(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22119:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return resultobj; fail: if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22119:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return resultobj; fail: if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBPlugin_ListAsString__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22138:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc1 == SWIG_NEWOBJ) delete[] buf1; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22138:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc1 == SWIG_NEWOBJ) delete[] buf1; ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22139:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22139:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBPlugin_Begin(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22171:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return resultobj; fail: if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22171:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return resultobj; fail: if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBPlugin_End(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22180:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return resultobj; fail: if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22180:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return resultobj; fail: if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new_OBError__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22257:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res1)) delete arg1; if (SWIG_IsNewObj(res2)) delete arg2; if (SWIG_IsNewObj(res3)) delete arg3; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22257:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res1)) delete arg1; if (SWIG_IsNewObj(res2)) delete arg2; if (SWIG_IsNewObj(res3)) delete arg3; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22258:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res4)) delete arg4; if (SWIG_IsNewObj(res5)) delete arg5; return resultobj; fail: ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22258:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res4)) delete arg4; if (SWIG_IsNewObj(res5)) delete arg5; return resultobj; fail: ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22259:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res1)) delete arg1; if (SWIG_IsNewObj(res2)) delete arg2; if (SWIG_IsNewObj(res3)) delete arg3; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22259:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res1)) delete arg1; if (SWIG_IsNewObj(res2)) delete arg2; if (SWIG_IsNewObj(res3)) delete arg3; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22260:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res4)) delete arg4; if (SWIG_IsNewObj(res5)) delete arg5; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22260:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res4)) delete arg4; if (SWIG_IsNewObj(res5)) delete arg5; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new_OBError__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22292:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res1)) delete arg1; if (SWIG_IsNewObj(res2)) delete arg2; if (SWIG_IsNewObj(res3)) delete arg3; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22292:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res1)) delete arg1; if (SWIG_IsNewObj(res2)) delete arg2; if (SWIG_IsNewObj(res3)) delete arg3; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22293:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res4)) delete arg4; if (SWIG_IsNewObj(res5)) delete arg5; return resultobj; fail: ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22293:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res4)) delete arg4; if (SWIG_IsNewObj(res5)) delete arg5; return resultobj; fail: ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22294:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res1)) delete arg1; if (SWIG_IsNewObj(res2)) delete arg2; if (SWIG_IsNewObj(res3)) delete arg3; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22294:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res1)) delete arg1; if (SWIG_IsNewObj(res2)) delete arg2; if (SWIG_IsNewObj(res3)) delete arg3; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22295:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res4)) delete arg4; if (SWIG_IsNewObj(res5)) delete arg5; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22295:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res4)) delete arg4; if (SWIG_IsNewObj(res5)) delete arg5; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new_OBError__SWIG_2(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22322:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res1)) delete arg1; if (SWIG_IsNewObj(res2)) delete arg2; if (SWIG_IsNewObj(res3)) delete arg3; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22322:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res1)) delete arg1; if (SWIG_IsNewObj(res2)) delete arg2; if (SWIG_IsNewObj(res3)) delete arg3; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22323:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res4)) delete arg4; return resultobj; fail: if (SWIG_IsNewObj(res1)) delete arg1; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22323:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res4)) delete arg4; return resultobj; fail: if (SWIG_IsNewObj(res1)) delete arg1; ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22324:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; if (SWIG_IsNewObj(res3)) delete arg3; if (SWIG_IsNewObj(res4)) delete arg4; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22324:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; if (SWIG_IsNewObj(res3)) delete arg3; if (SWIG_IsNewObj(res4)) delete arg4; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new_OBError__SWIG_3(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22346:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res1)) delete arg1; if (SWIG_IsNewObj(res2)) delete arg2; if (SWIG_IsNewObj(res3)) delete arg3; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22346:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res1)) delete arg1; if (SWIG_IsNewObj(res2)) delete arg2; if (SWIG_IsNewObj(res3)) delete arg3; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22348:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res3)) delete arg3; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22348:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res3)) delete arg3; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new_OBError__SWIG_4(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22364:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res1)) delete arg1; if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22364:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res1)) delete arg1; if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22365:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res1)) delete arg1; if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22365:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res1)) delete arg1; if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new_OBError__SWIG_5(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22375:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res1)) delete arg1; return resultobj; fail: if (SWIG_IsNewObj(res1)) delete arg1; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22375:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res1)) delete arg1; return resultobj; fail: if (SWIG_IsNewObj(res1)) delete arg1; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBMessageHandler_ThrowError__SWIG_2(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22544:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; if (SWIG_IsNewObj(res3)) delete arg3; return resultobj; fail: ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22544:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; if (SWIG_IsNewObj(res3)) delete arg3; return resultobj; fail: ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22545:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; if (SWIG_IsNewObj(res3)) delete arg3; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22545:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; if (SWIG_IsNewObj(res3)) delete arg3; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBMessageHandler_ThrowError__SWIG_3(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22566:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; if (SWIG_IsNewObj(res3)) delete arg3; return resultobj; fail: ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22566:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; if (SWIG_IsNewObj(res3)) delete arg3; return resultobj; fail: ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22567:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; if (SWIG_IsNewObj(res3)) delete arg3; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22567:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; if (SWIG_IsNewObj(res3)) delete arg3; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBMessageHandler_ThrowError__SWIG_4(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22585:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; if (SWIG_IsNewObj(res3)) delete arg3; return resultobj; fail: ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22585:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; if (SWIG_IsNewObj(res3)) delete arg3; return resultobj; fail: ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22586:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; if (SWIG_IsNewObj(res3)) delete arg3; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22586:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; if (SWIG_IsNewObj(res3)) delete arg3; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBMessageHandler_ThrowError(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22591:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_2; { { int res = SWIG_AsVal_int(argv[2], NULL); _v = SWIG_CheckState(res); } } if (!_v) goto check_2; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22591:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_2; { { int res = SWIG_AsVal_int(argv[2], NULL); _v = SWIG_CheckState(res); } } if (!_v) goto check_2; ^ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBFormat_FindType(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22805:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return resultobj; fail: if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22805:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return resultobj; fail: if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBFormat_RegisterFormat__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22931:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc3 == SWIG_NEWOBJ) delete[] buf3; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22931:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc3 == SWIG_NEWOBJ) delete[] buf3; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22932:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc3 == SWIG_NEWOBJ) delete[] buf3; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22932:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc3 == SWIG_NEWOBJ) delete[] buf3; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBFormat_RegisterFormat__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22943:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22943:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBFormat_Display__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22971:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc4 == SWIG_NEWOBJ) delete[] buf4; return resultobj; fail: if (alloc3 == SWIG_NEWOBJ) delete[] buf3; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22971:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc4 == SWIG_NEWOBJ) delete[] buf4; return resultobj; fail: if (alloc3 == SWIG_NEWOBJ) delete[] buf3; ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22972:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc4 == SWIG_NEWOBJ) delete[] buf4; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22972:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc4 == SWIG_NEWOBJ) delete[] buf4; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBFormat_Display__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22989:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc3 == SWIG_NEWOBJ) delete[] buf3; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:22989:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc3 == SWIG_NEWOBJ) delete[] buf3; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBFormat_FormatFromMIME(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:23005:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return resultobj; fail: if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:23005:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return resultobj; fail: if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new_OBConversion(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:23081:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_3; return _wrap_new_OBConversion__SWIG_5(self, argc, argv);} check_3: if (argc == 1) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:23081:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_3; return _wrap_new_OBConversion__SWIG_5(self, argc, argv);} check_3: if (argc == 1) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:23085:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_5; return _wrap_new_OBConversion__SWIG_0(self, argc, argv);} check_5: if (argc == 2) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:23085:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_5; return _wrap_new_OBConversion__SWIG_0(self, argc, argv);} check_5: if (argc == 2) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBConversion_RegisterFormat__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:23116:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc3 == SWIG_NEWOBJ) delete[] buf3; return resultobj; fail: if (alloc1 == SWIG_NEWOBJ) delete[] buf1; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:23116:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc3 == SWIG_NEWOBJ) delete[] buf3; return resultobj; fail: if (alloc1 == SWIG_NEWOBJ) delete[] buf1; ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:23117:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc3 == SWIG_NEWOBJ) delete[] buf3; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:23117:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc3 == SWIG_NEWOBJ) delete[] buf3; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBConversion_RegisterFormat__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:23129:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:23129:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBConversion_FindFormat__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:23146:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return resultobj; fail: if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:23146:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return resultobj; fail: if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBConversion_FindFormat(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:23158:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_1; return _wrap_OBConversion_FindFormat__SWIG_1(self, argc, argv);} check_1: if (argc == 1) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:23158:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_1; return _wrap_OBConversion_FindFormat__SWIG_1(self, argc, argv);} check_1: if (argc == 1) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBConversion_FormatFromExt__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:23171:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return resultobj; fail: if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:23171:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return resultobj; fail: if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBConversion_FormatFromExt__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:23185:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return resultobj; fail: if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:23185:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return resultobj; fail: if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBConversion_FormatFromExt(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:23210:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_1; return _wrap_OBConversion_FormatFromExt__SWIG_2(self, argc, argv);} check_1: if (argc == 1) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:23210:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_1; return _wrap_OBConversion_FormatFromExt__SWIG_2(self, argc, argv);} check_1: if (argc == 1) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBConversion_FormatFromMIME(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:23228:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return resultobj; fail: if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:23228:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return resultobj; fail: if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBConversion_SetInAndOutFormats__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:23333:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc3 == SWIG_NEWOBJ) delete[] buf3; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:23333:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc3 == SWIG_NEWOBJ) delete[] buf3; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:23334:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc3 == SWIG_NEWOBJ) delete[] buf3; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:23334:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc3 == SWIG_NEWOBJ) delete[] buf3; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBConversion_SetInAndOutFormats__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:23351:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc3 == SWIG_NEWOBJ) delete[] buf3; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:23351:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc3 == SWIG_NEWOBJ) delete[] buf3; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:23352:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc3 == SWIG_NEWOBJ) delete[] buf3; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:23352:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc3 == SWIG_NEWOBJ) delete[] buf3; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBConversion_SetInAndOutFormats__SWIG_2(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:23367:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc3 == SWIG_NEWOBJ) delete[] buf3; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:23367:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc3 == SWIG_NEWOBJ) delete[] buf3; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:23368:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc3 == SWIG_NEWOBJ) delete[] buf3; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:23368:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc3 == SWIG_NEWOBJ) delete[] buf3; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBConversion_SetInAndOutFormats(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:23426:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_1; { void *vptr = 0; int res = SWIG_ConvertPtr(argv[2], &vptr, SWIGTYPE_p_OpenBabel__OBFormat, 0); ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:23426:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_1; { void *vptr = 0; int res = SWIG_ConvertPtr(argv[2], &vptr, SWIGTYPE_p_OpenBabel__OBFormat, 0); ^ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:23431:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_3; { void *vptr = 0; int res = SWIG_ConvertPtr(argv[2], &vptr, SWIGTYPE_p_OpenBabel__OBFormat, 0); ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:23431:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_3; { void *vptr = 0; int res = SWIG_ConvertPtr(argv[2], &vptr, SWIGTYPE_p_OpenBabel__OBFormat, 0); ^ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:23436:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_5; { void *vptr = 0; int res = SWIG_ConvertPtr(argv[2], &vptr, SWIGTYPE_p_OpenBabel__OBFormat, 0); ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:23436:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_5; { void *vptr = 0; int res = SWIG_ConvertPtr(argv[2], &vptr, SWIGTYPE_p_OpenBabel__OBFormat, 0); ^ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBConversion_SetInFormat__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:23460:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:23460:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBConversion_SetInFormat__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:23472:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:23472:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBConversion_SetInFormat(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:23504:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_3; return _wrap_OBConversion_SetInFormat__SWIG_2(self, argc, argv);} check_3: if (argc == 3) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:23504:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_3; return _wrap_OBConversion_SetInFormat__SWIG_2(self, argc, argv);} check_3: if (argc == 3) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBConversion_SetOutFormat__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:23524:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:23524:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBConversion_SetOutFormat__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:23536:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:23536:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBConversion_SetOutFormat(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:23568:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_3; return _wrap_OBConversion_SetOutFormat__SWIG_2(self, argc, argv);} check_3: if (argc == 3) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:23568:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_3; return _wrap_OBConversion_SetOutFormat__SWIG_2(self, argc, argv);} check_3: if (argc == 3) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBConversion_IsOption__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:23681:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:23681:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBConversion_IsOption__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:23693:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:23693:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBConversion_AddOption__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:23747:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:23747:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBConversion_AddOption__SWIG_2(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:23757:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:23757:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBConversion_RemoveOption(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:23782:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:23782:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBConversion_SetOptions(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:23797:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:23797:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBResidue_SetName(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:24387:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:24387:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBResidue_SetAtomID(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:24473:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res3)) delete arg3; return resultobj; fail: if (SWIG_IsNewObj(res3)) delete arg3; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:24473:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res3)) delete arg3; return resultobj; fail: if (SWIG_IsNewObj(res3)) delete arg3; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBAtom_SetType__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:25193:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:25193:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBAtom_SetType__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:25205:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:25205:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBAtom_GetDistance(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:25759:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_1; return _wrap_OBAtom_GetDistance__SWIG_1(self, argc, argv);} check_1: if (argc == 2) { int _v = 0; { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:25759:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_1; return _wrap_OBAtom_GetDistance__SWIG_1(self, argc, argv);} check_1: if (argc == 2) { int _v = 0; { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:25761:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_2; return _wrap_OBAtom_GetDistance__SWIG_2(self, argc, argv);} check_2: if (argc == 2) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:25761:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_2; return _wrap_OBAtom_GetDistance__SWIG_2(self, argc, argv);} check_2: if (argc == 2) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBAtom_GetAngle(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:25797:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_1; { void *vptr = 0; int res = SWIG_ConvertPtr(argv[2], &vptr, SWIGTYPE_p_OpenBabel__OBAtom, 0); ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:25797:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_1; { void *vptr = 0; int res = SWIG_ConvertPtr(argv[2], &vptr, SWIGTYPE_p_OpenBabel__OBAtom, 0); ^ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBAtom_MatchesSMARTS(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:26407:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:26407:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBReaction_SetTitle(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:27188:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:27188:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBReaction_SetComment(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:27201:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:27201:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBMol_GetBond(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:27874:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_2; { void *vptr = 0; int res = SWIG_ConvertPtr(argv[2], &vptr, SWIGTYPE_p_OpenBabel__OBAtom, 0); ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:27874:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_2; { void *vptr = 0; int res = SWIG_ConvertPtr(argv[2], &vptr, SWIGTYPE_p_OpenBabel__OBAtom, 0); ^ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBMol_GetTorsion(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:27941:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_1; { void *vptr = 0; int res = SWIG_ConvertPtr(argv[2], &vptr, SWIGTYPE_p_OpenBabel__OBAtom, 0); ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:27941:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_1; { void *vptr = 0; int res = SWIG_ConvertPtr(argv[2], &vptr, SWIGTYPE_p_OpenBabel__OBAtom, 0); ^ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:27944:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_1; { void *vptr = 0; int res = SWIG_ConvertPtr(argv[4], &vptr, SWIGTYPE_p_OpenBabel__OBAtom, 0); ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:27944:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_1; { void *vptr = 0; int res = SWIG_ConvertPtr(argv[4], &vptr, SWIGTYPE_p_OpenBabel__OBAtom, 0); ^ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBMol_SetTitle__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:28168:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:28168:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBMol_SetTitle(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:28184:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_1; return _wrap_OBMol_SetTitle__SWIG_1(self, argc, argv);} check_1: if (argc == 2) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:28184:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_1; return _wrap_OBMol_SetTitle__SWIG_1(self, argc, argv);} check_1: if (argc == 2) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBMol_Rotate(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:28601:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_1; return _wrap_OBMol_Rotate__SWIG_0(self, argc, argv);} check_1: if (argc == 2) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:28601:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_1; return _wrap_OBMol_Rotate__SWIG_0(self, argc, argv);} check_1: if (argc == 2) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBMol_AddHydrogens(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:28740:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_2; return _wrap_OBMol_AddHydrogens__SWIG_4(self, argc, argv);} check_2: if (argc == 2) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:28740:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_2; return _wrap_OBMol_AddHydrogens__SWIG_4(self, argc, argv);} check_2: if (argc == 2) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBMol_SetTorsion(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:29576:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_1; { void *vptr = 0; int res = SWIG_ConvertPtr(argv[2], &vptr, SWIGTYPE_p_OpenBabel__OBAtom, 0); ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:29576:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_1; { void *vptr = 0; int res = SWIG_ConvertPtr(argv[2], &vptr, SWIGTYPE_p_OpenBabel__OBAtom, 0); ^ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:29579:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_1; { void *vptr = 0; int res = SWIG_ConvertPtr(argv[4], &vptr, SWIGTYPE_p_OpenBabel__OBAtom, 0); ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:29579:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_1; { void *vptr = 0; int res = SWIG_ConvertPtr(argv[4], &vptr, SWIGTYPE_p_OpenBabel__OBAtom, 0); ^ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_ThrowError__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:29603:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return resultobj; fail: if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:29603:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return resultobj; fail: if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_ThrowError(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:29615:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_1; return _wrap_ThrowError__SWIG_1(self, argc, argv);} check_1: if (argc == 1) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:29615:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_1; return _wrap_ThrowError__SWIG_1(self, argc, argv);} check_1: if (argc == 1) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBRing_SetType__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:29936:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:29936:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBRing_SetType(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:29952:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_1; return _wrap_OBRing_SetType__SWIG_1(self, argc, argv);} check_1: if (argc == 2) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:29952:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_1; return _wrap_OBRing_SetType__SWIG_1(self, argc, argv);} check_1: if (argc == 2) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBRing_IsMember(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:29996:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_1; return _wrap_OBRing_IsMember__SWIG_0(self, argc, argv);} check_1: if (argc == 2) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:29996:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_1; return _wrap_OBRing_IsMember__SWIG_0(self, argc, argv);} check_1: if (argc == 2) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBSmartsPattern_Init__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:30280:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:30280:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBSmartsPattern_Init__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:30293:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:30293:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBSmartsPattern_RestrictedMatch(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:30592:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_3; return _wrap_OBSmartsPattern_RestrictedMatch__SWIG_2(self, argc, argv);} check_3: if (argc == 4) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:30592:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_3; return _wrap_OBSmartsPattern_RestrictedMatch__SWIG_2(self, argc, argv);} check_3: if (argc == 4) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_AliasData_SetAlias__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:30872:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:30872:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_AliasData_SetAlias__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:30882:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:30882:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBFingerprint_FindType(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:31079:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return resultobj; fail: if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:31079:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return resultobj; fail: if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBFingerprint_GetBit(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:31124:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:31124:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBFingerprint_Tanimoto__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:31262:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res1)) delete arg1; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:31262:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res1)) delete arg1; ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:31263:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:31263:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBFingerprint_Tanimoto__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:31278:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res1)) delete arg1; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:31278:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res1)) delete arg1; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBFingerprint_Tanimoto(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:31282:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_1; return _wrap_OBFingerprint_Tanimoto__SWIG_1(self, argc, argv);} check_1: if (argc == 2) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:31282:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_1; return _wrap_OBFingerprint_Tanimoto__SWIG_1(self, argc, argv);} check_1: if (argc == 2) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBFingerprint_FindFingerprint(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:31302:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return resultobj; fail: if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:31302:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return resultobj; fail: if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_FptIndexHeader_fpid_set(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:31374:3: warning: this 'else' clause does not guard... [-Wmisleading-indentation] else memset(arg1->fpid,0,16*sizeof(char)); resultobj = SWIG_Py_Void(); return resultobj; fail: return NULL; } ^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:31374:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' else memset(arg1->fpid,0,16*sizeof(char)); resultobj = SWIG_Py_Void(); return resultobj; fail: return NULL; } ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_FptIndexHeader_datafilename_set(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:31393:3: warning: this 'else' clause does not guard... [-Wmisleading-indentation] else memset(arg1->datafilename,0,256*sizeof(char)); resultobj = SWIG_Py_Void(); return resultobj; fail: return NULL; } ^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:31393:55: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' else memset(arg1->datafilename,0,256*sizeof(char)); resultobj = SWIG_Py_Void(); return resultobj; fail: return NULL; } ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new_FastSearchIndexer(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:31722:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_2; { { int res = SWIG_AsVal_int(argv[2], NULL); _v = SWIG_CheckState(res); } } if (!_v) goto check_2; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:31722:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_2; { { int res = SWIG_AsVal_int(argv[2], NULL); _v = SWIG_CheckState(res); } } if (!_v) goto check_2; ^ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new_OBDescriptor__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:31784:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return resultobj; fail: if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:31784:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return resultobj; fail: if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new_OBDescriptor__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:31792:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return resultobj; fail: if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:31792:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return resultobj; fail: if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBDescriptor_FindType(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:31808:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return resultobj; fail: if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:31808:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return resultobj; fail: if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBDescriptor_Display__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:31987:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc4 == SWIG_NEWOBJ) delete[] buf4; return resultobj; fail: if (alloc3 == SWIG_NEWOBJ) delete[] buf3; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:31987:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc4 == SWIG_NEWOBJ) delete[] buf4; return resultobj; fail: if (alloc3 == SWIG_NEWOBJ) delete[] buf3; ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:31988:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc4 == SWIG_NEWOBJ) delete[] buf4; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:31988:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc4 == SWIG_NEWOBJ) delete[] buf4; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBDescriptor_Display__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:32005:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc3 == SWIG_NEWOBJ) delete[] buf3; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:32005:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc3 == SWIG_NEWOBJ) delete[] buf3; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBDescriptor_AddProperties(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:32075:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:32075:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBDescriptor_DeleteProperties(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:32088:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:32088:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBForceField_FindType(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:33485:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return resultobj; fail: if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:33485:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return resultobj; fail: if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBForceField_FindForceField__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:33511:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res1)) delete arg1; return resultobj; fail: if (SWIG_IsNewObj(res1)) delete arg1; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:33511:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res1)) delete arg1; return resultobj; fail: if (SWIG_IsNewObj(res1)) delete arg1; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBForceField_FindForceField__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:33520:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return resultobj; fail: if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:33520:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return resultobj; fail: if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBForceField_FindForceField(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:33524:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_1; return _wrap_OBForceField_FindForceField__SWIG_0(self, argc, argv);} check_1: if (argc == 1) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:33524:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_1; return _wrap_OBForceField_FindForceField__SWIG_0(self, argc, argv);} check_1: if (argc == 1) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBForceField_SetParameterFile(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:33541:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:33541:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBForceField_GetGrid(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:33770:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc4 == SWIG_NEWOBJ) delete[] buf4; return resultobj; fail: if (alloc4 == SWIG_NEWOBJ) delete[] buf4; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:33770:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc4 == SWIG_NEWOBJ) delete[] buf4; return resultobj; fail: if (alloc4 == SWIG_NEWOBJ) delete[] buf4; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBForceField_OBFFLog__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:34205:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:34205:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBForceField_LineSearch(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:34627:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_1; return _wrap_OBForceField_LineSearch__SWIG_0(self, argc, argv);} check_1: if (argc == 3) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:34627:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_1; return _wrap_OBForceField_LineSearch__SWIG_0(self, argc, argv);} check_1: if (argc == 3) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBBuilder_Connect(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:35747:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_2; return _wrap_OBBuilder_Connect__SWIG_1(self, argc, argv);} check_2: if (argc == 4) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:35747:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_2; return _wrap_OBBuilder_Connect__SWIG_1(self, argc, argv);} check_2: if (argc == 4) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBOp_FindType(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:35874:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return resultobj; fail: if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:35874:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return resultobj; fail: if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBOp_Do__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:35898:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc3 == SWIG_NEWOBJ) delete[] buf3; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:35898:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc3 == SWIG_NEWOBJ) delete[] buf3; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBOp_Do__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:35918:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc3 == SWIG_NEWOBJ) delete[] buf3; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:35918:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc3 == SWIG_NEWOBJ) delete[] buf3; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBOp_Do__SWIG_2(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:35933:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc3 == SWIG_NEWOBJ) delete[] buf3; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:35933:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc3 == SWIG_NEWOBJ) delete[] buf3; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new_OBChargeModel__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36033:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return resultobj; fail: if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36033:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return resultobj; fail: if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new_OBChargeModel__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36042:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return resultobj; fail: if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36042:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return resultobj; fail: if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBChargeModel_FindType(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36058:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return resultobj; fail: if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36058:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return resultobj; fail: if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBChargeModel_ComputeCharges__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36087:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc3 == SWIG_NEWOBJ) delete[] buf3; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36087:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc3 == SWIG_NEWOBJ) delete[] buf3; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBChemTsfm_Init(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36176:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res3)) delete arg3; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36176:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res3)) delete arg3; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36177:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res3)) delete arg3; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36177:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res3)) delete arg3; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBIsomorphismMapper_GetInstance__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36384:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36384:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_MapsTo(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36667:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res1)) delete arg1; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36667:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res1)) delete arg1; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_FindAutomorphisms__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36701:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res3)) delete arg3; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36701:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res3)) delete arg3; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_FindAutomorphisms__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36732:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res3)) delete arg3; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36732:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res3)) delete arg3; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_FindAutomorphisms__SWIG_2(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36757:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res3)) delete arg3; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36757:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res3)) delete arg3; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_FindAutomorphisms__SWIG_6(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36847:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res3)) delete arg3; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36847:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res3)) delete arg3; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_FindAutomorphisms__SWIG_7(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36868:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res3)) delete arg3; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36868:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res3)) delete arg3; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_FindAutomorphisms(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36873:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_2; { void *vptr = 0; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36873:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_2; { void *vptr = 0; ^ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36877:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_2; return _wrap_FindAutomorphisms__SWIG_4(self, argc, argv);} check_2: if (argc == 3) { int _v = 0; { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36877:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_2; return _wrap_FindAutomorphisms__SWIG_4(self, argc, argv);} check_2: if (argc == 3) { int _v = 0; { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36879:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_3; { void *vptr = 0; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36879:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_3; { void *vptr = 0; ^ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36884:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_5; { void *vptr = 0; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36884:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_5; { void *vptr = 0; ^ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36888:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_5; { { int res = SWIG_AsVal_size_t(argv[3], NULL); _v = SWIG_CheckState(res); } } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36888:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_5; { { int res = SWIG_AsVal_size_t(argv[3], NULL); _v = SWIG_CheckState(res); } } ^ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36889:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_5; return _wrap_FindAutomorphisms__SWIG_3(self, argc, argv);} check_5: if (argc == 4) { int _v = 0; { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36889:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_5; return _wrap_FindAutomorphisms__SWIG_3(self, argc, argv);} check_5: if (argc == 4) { int _v = 0; { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36893:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_6; return _wrap_FindAutomorphisms__SWIG_6(self, argc, argv);} check_6: if (argc == 4) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:36893:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_6; return _wrap_FindAutomorphisms__SWIG_6(self, argc, argv);} check_6: if (argc == 4) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_CompileSmilesQuery__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:37265:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res1)) delete arg1; return resultobj; fail: if (SWIG_IsNewObj(res1)) delete arg1; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:37265:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res1)) delete arg1; return resultobj; fail: if (SWIG_IsNewObj(res1)) delete arg1; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_CompileSmilesQuery__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:37275:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res1)) delete arg1; return resultobj; fail: if (SWIG_IsNewObj(res1)) delete arg1; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:37275:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res1)) delete arg1; return resultobj; fail: if (SWIG_IsNewObj(res1)) delete arg1; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_CanonicalLabels__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:37316:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:37316:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_CanonicalLabels__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:37348:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:37348:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_CanonicalLabels__SWIG_2(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:37377:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:37377:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_CanonicalLabels__SWIG_3(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:37400:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:37400:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBStereo_ContainsSameRefs(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:37472:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res1)) delete arg1; ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:37472:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res1)) delete arg1; ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:37473:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:37473:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBStereo_ContainsRef(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:37487:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res1)) delete arg1; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:37487:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res1)) delete arg1; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBStereo_NumInversions(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:37499:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res1)) delete arg1; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:37499:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res1)) delete arg1; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBStereo_Permutated(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:37532:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res1)) delete arg1; return resultobj; fail: if (SWIG_IsNewObj(res1)) delete arg1; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:37532:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res1)) delete arg1; return resultobj; fail: if (SWIG_IsNewObj(res1)) delete arg1; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_FindStereogenicUnits__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:38338:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:38338:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_FindStereogenicUnits__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:38362:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; if (SWIG_IsNewObj(res3)) delete arg3; return resultobj; fail: ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:38362:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; if (SWIG_IsNewObj(res3)) delete arg3; return resultobj; fail: ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:38363:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; if (SWIG_IsNewObj(res3)) delete arg3; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:38363:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; if (SWIG_IsNewObj(res3)) delete arg3; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new_OBBitVec(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:38400:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_2; return _wrap_new_OBBitVec__SWIG_2(self, argc, argv);} check_2: if (argc == 1) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:38400:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_2; return _wrap_new_OBBitVec__SWIG_2(self, argc, argv);} check_2: if (argc == 1) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBBitVec_FromVecInt(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:38593:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:38593:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBBitVec_FromString(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:38608:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:38608:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBBitVec___ior__(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:38694:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_1; return _wrap_OBBitVec___ior____SWIG_0(self, argc, argv);} check_1: if (argc == 2) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:38694:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_1; return _wrap_OBBitVec___ior____SWIG_0(self, argc, argv);} check_1: if (argc == 2) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new_OBRotorRule(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:38798:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return resultobj; fail: if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:38798:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return resultobj; fail: if (alloc1 == SWIG_NEWOBJ) delete[] buf1; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBRotamerList_AddRotamer(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:39982:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_1; return _wrap_OBRotamerList_AddRotamer__SWIG_0(self, argc, argv);} check_1: if (argc == 2) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:39982:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_1; return _wrap_OBRotamerList_AddRotamer__SWIG_0(self, argc, argv);} check_1: if (argc == 2) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:39984:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_2; return _wrap_OBRotamerList_AddRotamer__SWIG_1(self, argc, argv);} check_2: if (argc == 2) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:39984:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_2; return _wrap_OBRotamerList_AddRotamer__SWIG_1(self, argc, argv);} check_2: if (argc == 2) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBConformerFilter_IsGood(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:40379:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res3)) delete arg3; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:40379:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res3)) delete arg3; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBConformerScore_Score(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:40543:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res4)) delete arg4; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:40543:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res4)) delete arg4; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new_OBAlign__SWIG_6(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:41191:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res1)) delete arg1; if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:41191:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res1)) delete arg1; if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:41192:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res1)) delete arg1; if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:41192:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res1)) delete arg1; if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBAlign_SetRef(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:41226:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:41226:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBAlign_SetTarget(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:41240:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:41240:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new__OBMolAtomIter(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:41366:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_2; return _wrap_new__OBMolAtomIter__SWIG_1(self, argc, argv);} check_2: if (argc == 1) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:41366:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_2; return _wrap_new__OBMolAtomIter__SWIG_1(self, argc, argv);} check_2: if (argc == 1) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomIter_SetType__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:41579:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:41579:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomIter_SetType__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:41591:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:41591:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomIter_GetDistance(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:42143:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_2; return _wrap__OBMolAtomIter_GetDistance__SWIG_2(self, argc, argv);} check_2: if (argc == 2) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:42143:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_2; return _wrap__OBMolAtomIter_GetDistance__SWIG_2(self, argc, argv);} check_2: if (argc == 2) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomIter_GetAngle(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:42182:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_1; return _wrap__OBMolAtomIter_GetAngle__SWIG_1(self, argc, argv);} check_1: if (argc == 3) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:42182:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_1; return _wrap__OBMolAtomIter_GetAngle__SWIG_1(self, argc, argv);} check_1: if (argc == 3) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomIter_MatchesSMARTS(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:42789:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:42789:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomIter_SetTitle(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:42858:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:42858:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomIter_HasData__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:42871:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:42871:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomIter_HasData__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:42883:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:42883:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomIter_DeleteData__SWIG_3(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:42951:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:42951:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomIter_DeleteData(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:42960:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_3; return _wrap__OBMolAtomIter_DeleteData__SWIG_0(self, argc, argv);} check_3: if (argc == 2) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:42960:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_3; return _wrap__OBMolAtomIter_DeleteData__SWIG_0(self, argc, argv);} check_3: if (argc == 2) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomIter_GetData__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:43010:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:43010:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomIter_GetData__SWIG_2(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:43022:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:43022:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new__OBMolAtomDFSIter(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:43139:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_2; return _wrap_new__OBMolAtomDFSIter__SWIG_2(self, argc, argv);} check_2: if (argc == 1) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:43139:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_2; return _wrap_new__OBMolAtomDFSIter__SWIG_2(self, argc, argv);} check_2: if (argc == 1) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomDFSIter_SetType__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:43365:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:43365:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomDFSIter_SetType__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:43377:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:43377:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomDFSIter_SetType(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:43381:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_1; return _wrap__OBMolAtomDFSIter_SetType__SWIG_1(self, argc, argv);} check_1: if (argc == 2) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:43381:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_1; return _wrap__OBMolAtomDFSIter_SetType__SWIG_1(self, argc, argv);} check_1: if (argc == 2) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomDFSIter_GetDistance(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:43932:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_1; return _wrap__OBMolAtomDFSIter_GetDistance__SWIG_1(self, argc, argv);} check_1: if (argc == 2) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:43932:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_1; return _wrap__OBMolAtomDFSIter_GetDistance__SWIG_1(self, argc, argv);} check_1: if (argc == 2) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomDFSIter_GetAngle(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:43973:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_1; return _wrap__OBMolAtomDFSIter_GetAngle__SWIG_1(self, argc, argv);} check_1: if (argc == 3) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:43973:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_1; return _wrap__OBMolAtomDFSIter_GetAngle__SWIG_1(self, argc, argv);} check_1: if (argc == 3) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomDFSIter_MatchesSMARTS(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:44585:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:44585:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomDFSIter_SetTitle(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:44654:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:44654:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomDFSIter_HasData__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:44667:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:44667:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomDFSIter_HasData__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:44679:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:44679:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomDFSIter_DeleteData__SWIG_3(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:44747:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:44747:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomDFSIter_DeleteData(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:44752:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_1; return _wrap__OBMolAtomDFSIter_DeleteData__SWIG_1(self, argc, argv);} check_1: if (argc == 2) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:44752:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_1; return _wrap__OBMolAtomDFSIter_DeleteData__SWIG_1(self, argc, argv);} check_1: if (argc == 2) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:44757:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_3; return _wrap__OBMolAtomDFSIter_DeleteData__SWIG_0(self, argc, argv);} check_3: if (argc == 2) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:44757:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_3; return _wrap__OBMolAtomDFSIter_DeleteData__SWIG_0(self, argc, argv);} check_3: if (argc == 2) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomDFSIter_GetData__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:44808:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:44808:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomDFSIter_GetData__SWIG_2(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:44820:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:44820:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new__OBMolAtomBFSIter(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:44937:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_2; return _wrap_new__OBMolAtomBFSIter__SWIG_2(self, argc, argv);} check_2: if (argc == 1) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:44937:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_2; return _wrap_new__OBMolAtomBFSIter__SWIG_2(self, argc, argv);} check_2: if (argc == 1) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomBFSIter_SetType__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:45163:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:45163:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomBFSIter_SetType__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:45175:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:45175:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomBFSIter_SetType(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:45179:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_1; return _wrap__OBMolAtomBFSIter_SetType__SWIG_1(self, argc, argv);} check_1: if (argc == 2) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:45179:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_1; return _wrap__OBMolAtomBFSIter_SetType__SWIG_1(self, argc, argv);} check_1: if (argc == 2) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomBFSIter_GetDistance(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:45730:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_1; return _wrap__OBMolAtomBFSIter_GetDistance__SWIG_1(self, argc, argv);} check_1: if (argc == 2) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:45730:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_1; return _wrap__OBMolAtomBFSIter_GetDistance__SWIG_1(self, argc, argv);} check_1: if (argc == 2) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomBFSIter_GetAngle(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:45771:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_1; return _wrap__OBMolAtomBFSIter_GetAngle__SWIG_1(self, argc, argv);} check_1: if (argc == 3) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:45771:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_1; return _wrap__OBMolAtomBFSIter_GetAngle__SWIG_1(self, argc, argv);} check_1: if (argc == 3) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomBFSIter_MatchesSMARTS(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:46383:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:46383:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomBFSIter_SetTitle(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:46452:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:46452:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomBFSIter_HasData__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:46465:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:46465:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomBFSIter_HasData__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:46477:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:46477:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomBFSIter_DeleteData__SWIG_3(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:46545:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:46545:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomBFSIter_DeleteData(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:46550:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_1; return _wrap__OBMolAtomBFSIter_DeleteData__SWIG_1(self, argc, argv);} check_1: if (argc == 2) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:46550:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_1; return _wrap__OBMolAtomBFSIter_DeleteData__SWIG_1(self, argc, argv);} check_1: if (argc == 2) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:46555:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_3; return _wrap__OBMolAtomBFSIter_DeleteData__SWIG_0(self, argc, argv);} check_3: if (argc == 2) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:46555:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_3; return _wrap__OBMolAtomBFSIter_DeleteData__SWIG_0(self, argc, argv);} check_3: if (argc == 2) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomBFSIter_GetData__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:46606:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:46606:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolAtomBFSIter_GetData__SWIG_2(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:46618:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:46618:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new_OBMolBondBFSIter(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:46735:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_2; return _wrap_new_OBMolBondBFSIter__SWIG_2(self, argc, argv);} check_2: if (argc == 1) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:46735:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_2; return _wrap_new_OBMolBondBFSIter__SWIG_2(self, argc, argv);} check_2: if (argc == 1) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBMolBondBFSIter_SetTitle(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:47489:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:47489:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBMolBondBFSIter_HasData__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:47502:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:47502:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBMolBondBFSIter_HasData__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:47514:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:47514:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBMolBondBFSIter_DeleteData__SWIG_3(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:47582:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:47582:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBMolBondBFSIter_DeleteData(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:47591:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_3; return _wrap_OBMolBondBFSIter_DeleteData__SWIG_0(self, argc, argv);} check_3: if (argc == 2) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:47591:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_3; return _wrap_OBMolBondBFSIter_DeleteData__SWIG_0(self, argc, argv);} check_3: if (argc == 2) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBMolBondBFSIter_GetData__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:47642:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:47642:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_OBMolBondBFSIter_GetData__SWIG_2(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:47654:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:47654:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new__OBMolBondIter(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:47761:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_2; return _wrap_new__OBMolBondIter__SWIG_1(self, argc, argv);} check_2: if (argc == 1) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:47761:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_2; return _wrap_new__OBMolBondIter__SWIG_1(self, argc, argv);} check_2: if (argc == 1) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolBondIter_SetTitle(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:48503:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:48503:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolBondIter_HasData__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:48516:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:48516:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolBondIter_HasData__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:48528:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:48528:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolBondIter_DeleteData__SWIG_3(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:48596:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:48596:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolBondIter_DeleteData(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:48605:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_3; return _wrap__OBMolBondIter_DeleteData__SWIG_0(self, argc, argv);} check_3: if (argc == 2) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:48605:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_3; return _wrap__OBMolBondIter_DeleteData__SWIG_0(self, argc, argv);} check_3: if (argc == 2) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolBondIter_GetData__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:48655:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:48655:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolBondIter_GetData__SWIG_2(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:48667:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:48667:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new__OBAtomAtomIter(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:48774:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_2; return _wrap_new__OBAtomAtomIter__SWIG_1(self, argc, argv);} check_2: if (argc == 1) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:48774:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_2; return _wrap_new__OBAtomAtomIter__SWIG_1(self, argc, argv);} check_2: if (argc == 1) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBAtomAtomIter_SetType__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:48987:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:48987:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBAtomAtomIter_SetType__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:48999:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:48999:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBAtomAtomIter_SetType(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:49003:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_1; return _wrap__OBAtomAtomIter_SetType__SWIG_1(self, argc, argv);} check_1: if (argc == 2) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:49003:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_1; return _wrap__OBAtomAtomIter_SetType__SWIG_1(self, argc, argv);} check_1: if (argc == 2) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBAtomAtomIter_GetDistance(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:49552:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_2; return _wrap__OBAtomAtomIter_GetDistance__SWIG_2(self, argc, argv);} check_2: if (argc == 2) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:49552:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_2; return _wrap__OBAtomAtomIter_GetDistance__SWIG_2(self, argc, argv);} check_2: if (argc == 2) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBAtomAtomIter_GetAngle(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:49591:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_1; return _wrap__OBAtomAtomIter_GetAngle__SWIG_1(self, argc, argv);} check_1: if (argc == 3) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:49591:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_1; return _wrap__OBAtomAtomIter_GetAngle__SWIG_1(self, argc, argv);} check_1: if (argc == 3) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBAtomAtomIter_MatchesSMARTS(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:50199:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:50199:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBAtomAtomIter_SetTitle(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:50268:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:50268:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBAtomAtomIter_HasData__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:50281:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:50281:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBAtomAtomIter_HasData__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:50293:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:50293:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBAtomAtomIter_DeleteData__SWIG_3(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:50361:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:50361:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBAtomAtomIter_DeleteData(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:50370:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_3; return _wrap__OBAtomAtomIter_DeleteData__SWIG_0(self, argc, argv);} check_3: if (argc == 2) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:50370:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_3; return _wrap__OBAtomAtomIter_DeleteData__SWIG_0(self, argc, argv);} check_3: if (argc == 2) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBAtomAtomIter_GetData__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:50420:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:50420:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBAtomAtomIter_GetData__SWIG_2(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:50432:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:50432:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new__OBAtomBondIter(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:50539:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_2; return _wrap_new__OBAtomBondIter__SWIG_1(self, argc, argv);} check_2: if (argc == 1) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:50539:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_2; return _wrap_new__OBAtomBondIter__SWIG_1(self, argc, argv);} check_2: if (argc == 1) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBAtomBondIter_SetTitle(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:51281:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:51281:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBAtomBondIter_HasData__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:51294:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:51294:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBAtomBondIter_HasData__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:51306:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:51306:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBAtomBondIter_DeleteData__SWIG_3(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:51374:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:51374:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBAtomBondIter_DeleteData(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:51383:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_3; return _wrap__OBAtomBondIter_DeleteData__SWIG_0(self, argc, argv);} check_3: if (argc == 2) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:51383:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_3; return _wrap__OBAtomBondIter_DeleteData__SWIG_0(self, argc, argv);} check_3: if (argc == 2) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBAtomBondIter_GetData__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:51433:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:51433:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBAtomBondIter_GetData__SWIG_2(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:51445:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:51445:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new__OBResidueIter(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:51552:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_2; return _wrap_new__OBResidueIter__SWIG_1(self, argc, argv);} check_2: if (argc == 1) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:51552:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_2; return _wrap_new__OBResidueIter__SWIG_1(self, argc, argv);} check_2: if (argc == 1) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBResidueIter_SetName(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:51663:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:51663:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBResidueIter_SetAtomID(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:51749:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res3)) delete arg3; return resultobj; fail: if (SWIG_IsNewObj(res3)) delete arg3; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:51749:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res3)) delete arg3; return resultobj; fail: if (SWIG_IsNewObj(res3)) delete arg3; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBResidueIter_SetTitle(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:52081:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:52081:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBResidueIter_HasData__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:52094:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:52094:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBResidueIter_HasData__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:52106:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:52106:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBResidueIter_DeleteData__SWIG_3(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:52174:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:52174:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBResidueIter_DeleteData(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:52183:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_3; return _wrap__OBResidueIter_DeleteData__SWIG_0(self, argc, argv);} check_3: if (argc == 2) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:52183:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_3; return _wrap__OBResidueIter_DeleteData__SWIG_0(self, argc, argv);} check_3: if (argc == 2) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBResidueIter_GetData__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:52233:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:52233:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBResidueIter_GetData__SWIG_2(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:52245:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:52245:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new__OBResidueAtomIter(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:52352:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_2; return _wrap_new__OBResidueAtomIter__SWIG_1(self, argc, argv);} check_2: if (argc == 1) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:52352:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_2; return _wrap_new__OBResidueAtomIter__SWIG_1(self, argc, argv);} check_2: if (argc == 1) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBResidueAtomIter_SetType__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:52569:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:52569:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBResidueAtomIter_SetType__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:52581:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:52581:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBResidueAtomIter_SetType(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:52585:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_1; return _wrap__OBResidueAtomIter_SetType__SWIG_1(self, argc, argv);} check_1: if (argc == 2) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:52585:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_1; return _wrap__OBResidueAtomIter_SetType__SWIG_1(self, argc, argv);} check_1: if (argc == 2) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBResidueAtomIter_GetDistance(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:53138:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_1; return _wrap__OBResidueAtomIter_GetDistance__SWIG_1(self, argc, argv);} check_1: if (argc == 2) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:53138:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_1; return _wrap__OBResidueAtomIter_GetDistance__SWIG_1(self, argc, argv);} check_1: if (argc == 2) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBResidueAtomIter_GetAngle(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:53179:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_1; return _wrap__OBResidueAtomIter_GetAngle__SWIG_1(self, argc, argv);} check_1: if (argc == 3) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:53179:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_1; return _wrap__OBResidueAtomIter_GetAngle__SWIG_1(self, argc, argv);} check_1: if (argc == 3) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBResidueAtomIter_MatchesSMARTS(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:53792:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:53792:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBResidueAtomIter_SetTitle(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:53861:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:53861:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBResidueAtomIter_HasData__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:53874:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:53874:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBResidueAtomIter_HasData__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:53886:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:53886:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBResidueAtomIter_DeleteData__SWIG_3(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:53954:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:53954:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBResidueAtomIter_DeleteData(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:53959:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_1; return _wrap__OBResidueAtomIter_DeleteData__SWIG_1(self, argc, argv);} check_1: if (argc == 2) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:53959:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_1; return _wrap__OBResidueAtomIter_DeleteData__SWIG_1(self, argc, argv);} check_1: if (argc == 2) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:53964:6: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_3; return _wrap__OBResidueAtomIter_DeleteData__SWIG_0(self, argc, argv);} check_3: if (argc == 2) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:53964:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_3; return _wrap__OBResidueAtomIter_DeleteData__SWIG_0(self, argc, argv);} check_3: if (argc == 2) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBResidueAtomIter_GetData__SWIG_1(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:54015:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:54015:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (SWIG_IsNewObj(res2)) delete arg2; return resultobj; fail: if (SWIG_IsNewObj(res2)) delete arg2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBResidueAtomIter_GetData__SWIG_2(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:54027:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:54027:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new__OBMolAngleIter(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:54134:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_2; return _wrap_new__OBMolAngleIter__SWIG_1(self, argc, argv);} check_2: if (argc == 1) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:54134:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_2; return _wrap_new__OBMolAngleIter__SWIG_1(self, argc, argv);} check_2: if (argc == 1) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new__OBMolTorsionIter(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:54213:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_2; return _wrap_new__OBMolTorsionIter__SWIG_1(self, argc, argv);} check_2: if (argc == 1) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:54213:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_2; return _wrap_new__OBMolTorsionIter__SWIG_1(self, argc, argv);} check_2: if (argc == 1) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new__OBMolPairIter(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:54294:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_2; return _wrap_new__OBMolPairIter__SWIG_1(self, argc, argv);} check_2: if (argc == 1) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:54294:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_2; return _wrap_new__OBMolPairIter__SWIG_1(self, argc, argv);} check_2: if (argc == 1) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap_new__OBMolRingIter(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:54373:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_2; return _wrap_new__OBMolRingIter__SWIG_1(self, argc, argv);} check_2: if (argc == 1) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:54373:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_2; return _wrap_new__OBMolRingIter__SWIG_1(self, argc, argv);} check_2: if (argc == 1) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolRingIter_SetType__SWIG_0(PyObject*, int, PyObject**)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:54531:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:54531:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return resultobj; fail: if (alloc2 == SWIG_NEWOBJ) delete[] buf2; return NULL; } ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In function 'PyObject* _wrap__OBMolRingIter_SetType(PyObject*, PyObject*)': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:54547:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!_v) goto check_1; return _wrap__OBMolRingIter_SetType__SWIG_1(self, argc, argv);} check_1: if (argc == 2) { ^~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:54547:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!_v) goto check_1; return _wrap__OBMolRingIter_SetType__SWIG_1(self, argc, argv);} check_1: if (argc == 2) { ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In instantiation of 'static Type swig::traits_as::as(PyObject*, bool) [with Type = std::vector; PyObject = _object]': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:4206:64: required from 'Type swig::as(PyObject*, bool) [with Type = std::vector; PyObject = _object]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:4769:20: required from 'swig::SwigPySequence_Ref::operator T() const [with T = std::vector]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:5040:30: required from 'void swig::assign(const SwigPySeq&, Seq*) [with SwigPySeq = swig::SwigPySequence_Cont >; Seq = std::vector >]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:5062:12: required from 'static int swig::traits_asptr_stdseq::asptr(PyObject*, swig::traits_asptr_stdseq::sequence**) [with Seq = std::vector >; T = std::vector; PyObject = _object; swig::traits_asptr_stdseq::sequence = std::vector >]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:5116:52: required from 'static int swig::traits_asptr >::asptr(PyObject*, std::vector<_Tp>**) [with T = std::vector; PyObject = _object]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:4098:37: required from 'int swig::asptr(PyObject*, Type**) [with Type = std::vector >; PyObject = _object]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:8551:41: required from here /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:4181:8: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'class std::vector' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] memset(v_def,0,sizeof(Type)); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/oberror.h:28, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/math/matrix3x3.h:27, from /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:3403: /usr/include/c++/8/bits/stl_vector.h:339:11: note: 'class std::vector' declared here class vector : protected _Vector_base<_Tp, _Alloc> ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In instantiation of 'static Type swig::traits_as::as(PyObject*, bool) [with Type = OpenBabel::vector3; PyObject = _object]': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:4206:64: required from 'Type swig::as(PyObject*, bool) [with Type = OpenBabel::vector3; PyObject = _object]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:4769:20: required from 'swig::SwigPySequence_Ref::operator T() const [with T = OpenBabel::vector3]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:5040:30: required from 'void swig::assign(const SwigPySeq&, Seq*) [with SwigPySeq = swig::SwigPySequence_Cont; Seq = std::vector]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:5062:12: required from 'static int swig::traits_asptr_stdseq::asptr(PyObject*, swig::traits_asptr_stdseq::sequence**) [with Seq = std::vector; T = OpenBabel::vector3; PyObject = _object; swig::traits_asptr_stdseq::sequence = std::vector]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:5116:52: required from 'static int swig::traits_asptr >::asptr(PyObject*, std::vector<_Tp>**) [with T = OpenBabel::vector3; PyObject = _object]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:4098:37: required from 'int swig::asptr(PyObject*, Type**) [with Type = std::vector; PyObject = _object]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:9883:41: required from here /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:4181:8: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'class OpenBabel::vector3' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] memset(v_def,0,sizeof(Type)); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:3402: /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/math/vector3.h:45:15: note: 'class OpenBabel::vector3' declared here class OBAPI vector3 ^~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In instantiation of 'static Type swig::traits_as::as(PyObject*, bool) [with Type = std::vector; PyObject = _object]': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:4206:64: required from 'Type swig::as(PyObject*, bool) [with Type = std::vector; PyObject = _object]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:4769:20: required from 'swig::SwigPySequence_Ref::operator T() const [with T = std::vector]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:5040:30: required from 'void swig::assign(const SwigPySeq&, Seq*) [with SwigPySeq = swig::SwigPySequence_Cont >; Seq = std::vector >]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:5062:12: required from 'static int swig::traits_asptr_stdseq::asptr(PyObject*, swig::traits_asptr_stdseq::sequence**) [with Seq = std::vector >; T = std::vector; PyObject = _object; swig::traits_asptr_stdseq::sequence = std::vector >]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:5116:52: required from 'static int swig::traits_asptr >::asptr(PyObject*, std::vector<_Tp>**) [with T = std::vector; PyObject = _object]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:4098:37: required from 'int swig::asptr(PyObject*, Type**) [with Type = std::vector >; PyObject = _object]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:10229:41: required from here /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:4181:8: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'class std::vector' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] memset(v_def,0,sizeof(Type)); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/oberror.h:28, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/math/matrix3x3.h:27, from /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:3403: /usr/include/c++/8/bits/stl_vector.h:339:11: note: 'class std::vector' declared here class vector : protected _Vector_base<_Tp, _Alloc> ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In instantiation of 'static Type swig::traits_as::as(PyObject*, bool) [with Type = OpenBabel::OBMol; PyObject = _object]': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:4206:64: required from 'Type swig::as(PyObject*, bool) [with Type = OpenBabel::OBMol; PyObject = _object]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:4769:20: required from 'swig::SwigPySequence_Ref::operator T() const [with T = OpenBabel::OBMol]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:5040:30: required from 'void swig::assign(const SwigPySeq&, Seq*) [with SwigPySeq = swig::SwigPySequence_Cont; Seq = std::vector]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:5062:12: required from 'static int swig::traits_asptr_stdseq::asptr(PyObject*, swig::traits_asptr_stdseq::sequence**) [with Seq = std::vector; T = OpenBabel::OBMol; PyObject = _object; swig::traits_asptr_stdseq::sequence = std::vector]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:5116:52: required from 'static int swig::traits_asptr >::asptr(PyObject*, std::vector<_Tp>**) [with T = OpenBabel::OBMol; PyObject = _object]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:4098:37: required from 'int swig::asptr(PyObject*, Type**) [with Type = std::vector; PyObject = _object]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:10587:41: required from here /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:4181:8: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'class OpenBabel::OBMol' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] memset(v_def,0,sizeof(Type)); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:3411: /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/mol.h:113:14: note: 'class OpenBabel::OBMol' declared here class OBAPI OBMol: public OBBase ^~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In instantiation of 'static Type swig::traits_as::as(PyObject*, bool) [with Type = OpenBabel::OBBond; PyObject = _object]': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:4206:64: required from 'Type swig::as(PyObject*, bool) [with Type = OpenBabel::OBBond; PyObject = _object]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:4769:20: required from 'swig::SwigPySequence_Ref::operator T() const [with T = OpenBabel::OBBond]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:5040:30: required from 'void swig::assign(const SwigPySeq&, Seq*) [with SwigPySeq = swig::SwigPySequence_Cont; Seq = std::vector >]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:5062:12: required from 'static int swig::traits_asptr_stdseq::asptr(PyObject*, swig::traits_asptr_stdseq::sequence**) [with Seq = std::vector >; T = OpenBabel::OBBond; PyObject = _object; swig::traits_asptr_stdseq::sequence = std::vector >]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:5116:52: required from 'static int swig::traits_asptr >::asptr(PyObject*, std::vector<_Tp>**) [with T = OpenBabel::OBBond; PyObject = _object]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:4098:37: required from 'int swig::asptr(PyObject*, Type**) [with Type = std::vector >; PyObject = _object]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:10926:41: required from here /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:4181:8: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'class OpenBabel::OBBond' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] memset(v_def,0,sizeof(Type)); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/mol.h:43, from /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:3411: /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/bond.h:69:15: note: 'class OpenBabel::OBBond' declared here class OBAPI OBBond: public OBBase ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In instantiation of 'static Type swig::traits_as::as(PyObject*, bool) [with Type = OpenBabel::OBResidue; PyObject = _object]': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:4206:64: required from 'Type swig::as(PyObject*, bool) [with Type = OpenBabel::OBResidue; PyObject = _object]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:4769:20: required from 'swig::SwigPySequence_Ref::operator T() const [with T = OpenBabel::OBResidue]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:5040:30: required from 'void swig::assign(const SwigPySeq&, Seq*) [with SwigPySeq = swig::SwigPySequence_Cont; Seq = std::vector >]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:5062:12: required from 'static int swig::traits_asptr_stdseq::asptr(PyObject*, swig::traits_asptr_stdseq::sequence**) [with Seq = std::vector >; T = OpenBabel::OBResidue; PyObject = _object; swig::traits_asptr_stdseq::sequence = std::vector >]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:5116:52: required from 'static int swig::traits_asptr >::asptr(PyObject*, std::vector<_Tp>**) [with T = OpenBabel::OBResidue; PyObject = _object]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:4098:37: required from 'int swig::asptr(PyObject*, Type**) [with Type = std::vector >; PyObject = _object]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:11265:41: required from here /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:4181:8: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'class OpenBabel::OBResidue' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] memset(v_def,0,sizeof(Type)); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/atom.h:34, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/mol.h:42, from /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:3411: /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/residue.h:50:14: note: 'class OpenBabel::OBResidue' declared here class OBAPI OBResidue : public OBBase ^~~~~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In instantiation of 'static Type swig::traits_as::as(PyObject*, bool) [with Type = OpenBabel::OBRing; PyObject = _object]': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:4206:64: required from 'Type swig::as(PyObject*, bool) [with Type = OpenBabel::OBRing; PyObject = _object]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:4769:20: required from 'swig::SwigPySequence_Ref::operator T() const [with T = OpenBabel::OBRing]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:5040:30: required from 'void swig::assign(const SwigPySeq&, Seq*) [with SwigPySeq = swig::SwigPySequence_Cont; Seq = std::vector >]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:5062:12: required from 'static int swig::traits_asptr_stdseq::asptr(PyObject*, swig::traits_asptr_stdseq::sequence**) [with Seq = std::vector >; T = OpenBabel::OBRing; PyObject = _object; swig::traits_asptr_stdseq::sequence = std::vector >]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:5116:52: required from 'static int swig::traits_asptr >::asptr(PyObject*, std::vector<_Tp>**) [with T = OpenBabel::OBRing; PyObject = _object]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:4098:37: required from 'int swig::asptr(PyObject*, Type**) [with Type = std::vector >; PyObject = _object]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:11607:41: required from here /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:4181:8: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'class OpenBabel::OBRing' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] memset(v_def,0,sizeof(Type)); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/mol.h:50, from /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:3411: /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/ring.h:39:15: note: 'class OpenBabel::OBRing' declared here class OBAPI OBRing ^~~~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In instantiation of 'static Type swig::traits_as::as(PyObject*, bool) [with Type = std::pair; PyObject = _object]': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:4206:64: required from 'Type swig::as(PyObject*, bool) [with Type = std::pair; PyObject = _object]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:4769:20: required from 'swig::SwigPySequence_Ref::operator T() const [with T = std::pair]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:5040:30: required from 'void swig::assign(const SwigPySeq&, Seq*) [with SwigPySeq = swig::SwigPySequence_Cont >; Seq = std::vector >]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:5062:12: required from 'static int swig::traits_asptr_stdseq::asptr(PyObject*, swig::traits_asptr_stdseq::sequence**) [with Seq = std::vector >; T = std::pair; PyObject = _object; swig::traits_asptr_stdseq::sequence = std::vector >]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:5116:52: required from 'static int swig::traits_asptr >::asptr(PyObject*, std::vector<_Tp>**) [with T = std::pair; PyObject = _object]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:4098:37: required from 'int swig::asptr(PyObject*, Type**) [with Type = std::vector >; PyObject = _object]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:13094:41: required from here /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:4181:8: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'struct std::pair' with no trivial copy-assignment; use assignment instead [-Wclass-memaccess] memset(v_def,0,sizeof(Type)); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/stl_algobase.h:64, from /usr/include/c++/8/bits/char_traits.h:39, from /usr/include/c++/8/string:40, from /usr/include/c++/8/stdexcept:39, from /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:3322: /usr/include/c++/8/bits/stl_pair.h:208:12: note: 'struct std::pair' declared here struct pair ^~~~ /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp: In instantiation of 'static Type swig::traits_as::as(PyObject*, bool) [with Type = std::vector >; PyObject = _object]': /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:4206:64: required from 'Type swig::as(PyObject*, bool) [with Type = std::vector >; PyObject = _object]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:4769:20: required from 'swig::SwigPySequence_Ref::operator T() const [with T = std::vector >]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:5040:30: required from 'void swig::assign(const SwigPySeq&, Seq*) [with SwigPySeq = swig::SwigPySequence_Cont > >; Seq = std::vector > >]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:5062:12: required from 'static int swig::traits_asptr_stdseq::asptr(PyObject*, swig::traits_asptr_stdseq::sequence**) [with Seq = std::vector > >; T = std::vector >; PyObject = _object; swig::traits_asptr_stdseq::sequence = std::vector > >]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:5116:52: required from 'static int swig::traits_asptr >::asptr(PyObject*, std::vector<_Tp>**) [with T = std::vector >; PyObject = _object]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:4098:37: required from 'int swig::asptr(PyObject*, Type**) [with Type = std::vector > >; PyObject = _object]' /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:13461:41: required from here /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:4181:8: warning: 'void* memset(void*, int, size_t)' clearing an object of type 'class std::vector >' with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] memset(v_def,0,sizeof(Type)); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/oberror.h:28, from /usr/src/RPM/BUILD/openbabel-2.4.1/include/openbabel/math/matrix3x3.h:27, from /usr/src/RPM/BUILD/openbabel-2.4.1/scripts/python/openbabel-python.cpp:3403: /usr/include/c++/8/bits/stl_vector.h:339:11: note: 'class std::vector >' declared here class vector : protected _Vector_base<_Tp, _Alloc> ^~~~~~ make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [100%] Linking CXX shared module ../lib/_openbabel.so cd /usr/src/RPM/BUILD/openbabel-2.4.1/scripts && /usr/bin/cmake -E cmake_link_script CMakeFiles/bindings_python.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include/eigen2 -pthread -O2 -g -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -shared -o ../lib/_openbabel.so CMakeFiles/bindings_python.dir/python/openbabel-python.cpp.o -lpython2.7 ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [100%] Built target bindings_python make[1]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' /usr/bin/cmake -E cmake_progress_start /usr/src/RPM/BUILD/openbabel-2.4.1/CMakeFiles 0 make: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' + exit 0 Executing(%install): /bin/sh -e /usr/src/tmp/rpm-tmp.74239 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + /bin/chmod -Rf u+rwX -- /usr/src/tmp/openbabel-buildroot + : + /bin/rm -rf -- /usr/src/tmp/openbabel-buildroot + cd openbabel-2.4.1 + make 'INSTALL=/bin/install -p' install DESTDIR=/usr/src/tmp/openbabel-buildroot make: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[1]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 13%] Built target openbabel make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 14%] Built target plugin_descriptors make[2]: Entering directory '/usr/src/RPM/BUILD/openbabel-2.4.1' make[2]: Leaving directory '/usr/src/RPM/BUILD/openbabel-2.4.1' [ 15%] Built target plugin_fingerprints make[2]: Entering 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(rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib/openbabel/2.4.1/plugin_ops.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib/openbabel/2.4.1/plugin_forcefields.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib/openbabel/2.4.1/plugin_fingerprints.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib/openbabel/2.4.1/plugin_descriptors.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib/libopenbabel.so.5.0.0' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) Verifying and fixing files in /usr/src/tmp/openbabel-buildroot (binconfig,pkgconfig,libtool,desktop) Checking contents of files in /usr/src/tmp/openbabel-buildroot/ (default) Compressing files in /usr/src/tmp/openbabel-buildroot (auto) removed '/usr/src/tmp/openbabel-buildroot/usr/share/man/man1/obabel.1' '/usr/src/tmp/openbabel-buildroot/usr/share/man/man1/obabel.1.xz' -> 'babel.1.xz' removed '/usr/src/tmp/openbabel-buildroot/usr/share/man/man1/obabel.1.xz' '/usr/src/tmp/openbabel-buildroot/usr/share/man/man1/obabel.1.xz' -> 'babel.1.xz' Adjusting library links in /usr/src/tmp/openbabel-buildroot ./usr/lib: libopenbabel.so.5 -> libopenbabel.so.5.0.0 libinchi.so.0 -> libinchi.so.0.4.1 Verifying ELF objects in /usr/src/tmp/openbabel-buildroot (arch=normal,fhs=normal,lfs=relaxed,lint=relaxed,rpath=normal,stack=normal,textrel=normal,unresolved=normal) Bytecompiling python modules in /usr/src/tmp/openbabel-buildroot using /usr/bin/python compile /usr/src/tmp/openbabel-buildroot/usr/lib/python2.7/site-packages/openbabel.py compile /usr/src/tmp/openbabel-buildroot/usr/lib/python2.7/site-packages/pybel.py Bytecompiling python modules with optimization in /usr/src/tmp/openbabel-buildroot using /usr/bin/python -O compile /usr/src/tmp/openbabel-buildroot/usr/lib/python2.7/site-packages/openbabel.py compile /usr/src/tmp/openbabel-buildroot/usr/lib/python2.7/site-packages/pybel.py Hardlinking identical .pyc and .pyo files './usr/lib/python2.7/site-packages/pybel.pyo' => './usr/lib/python2.7/site-packages/pybel.pyc' './usr/lib/python2.7/site-packages/openbabel.pyo' => './usr/lib/python2.7/site-packages/openbabel.pyc' Processing files: openbabel-2.4.1-alt4 Executing(%doc): /bin/sh -e /usr/src/tmp/rpm-tmp.50854 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd openbabel-2.4.1 + DOCDIR=/usr/src/tmp/openbabel-buildroot/usr/share/doc/openbabel-2.4.1 + export DOCDIR + rm -rf /usr/src/tmp/openbabel-buildroot/usr/share/doc/openbabel-2.4.1 + /bin/mkdir -p /usr/src/tmp/openbabel-buildroot/usr/share/doc/openbabel-2.4.1 + cp -prL AUTHORS README.md THANKS /usr/src/tmp/openbabel-buildroot/usr/share/doc/openbabel-2.4.1 + chmod -R go-w /usr/src/tmp/openbabel-buildroot/usr/share/doc/openbabel-2.4.1 + chmod -R a+rX /usr/src/tmp/openbabel-buildroot/usr/share/doc/openbabel-2.4.1 + cp -prL doc/FAQ.html doc/README.dioxin.pov doc/README.povray doc/dioxin.inc doc/dioxin.mol2 doc/dioxin.png doc/dioxin.pov /usr/src/tmp/openbabel-buildroot/usr/share/doc/openbabel-2.4.1 + chmod -R go-w /usr/src/tmp/openbabel-buildroot/usr/share/doc/openbabel-2.4.1 + chmod -R a+rX /usr/src/tmp/openbabel-buildroot/usr/share/doc/openbabel-2.4.1 + exit 0 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.23K0Ql find-provides: running scripts (alternatives,debuginfo,gir,lib,pam,perl,pkgconfig,python,shell,typelib) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.bwjJF3 find-requires: running scripts (cpp,debuginfo,files,gir-js,gir-python,gir,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks,systemd-services,typelib) Requires: /lib/ld-linux.so.2, libc.so.6(GLIBC_2.0), libc.so.6(GLIBC_2.1.3), libc.so.6(GLIBC_2.3.4), libc.so.6(GLIBC_2.4), libgcc_s.so.1(GCC_3.0), libopenbabel.so.5 >= set:piPkeuUAuwVbsIcZlTnorwQknvyDoWG353uPasEjGnb3tivcMQ6gtjaTtpwZeydZ5jcIxNwYEZac0KbVOExrdy1CtTZwlMhSMQ5HhZFmEYyf7jliu0LSgJVxLdbD8T3Ebt0U7JSUcEYIrozZDD5mhGF9DsZmip2uOYdzZ19OjMzFa8ReG3KYLWHW8n8J8xQY06bK8kHBQfxHM6JkA54R1tUhH6bucyjiZ8bhuSqzDsDEfpCKAZJlwZfG0dPaj506GalSVZogWuZfsUhkZ4ptTJEJZHxhijKo91ZzAevIZyYjWjytb3nqB62Y348lpzUfthwLUdUuf2Fr5, libstdc++.so.6(CXXABI_1.3), libstdc++.so.6(CXXABI_1.3.8), libstdc++.so.6(CXXABI_1.3.9), libstdc++.so.6(GLIBCXX_3.4), libstdc++.so.6(GLIBCXX_3.4.11), libstdc++.so.6(GLIBCXX_3.4.15), libstdc++.so.6(GLIBCXX_3.4.20), libstdc++.so.6(GLIBCXX_3.4.21), libstdc++.so.6(GLIBCXX_3.4.9), libwx_baseu-2.8.so.0 >= set:pi4nLt9ZasXNouIGrHjR1uh7KYwXZkS5Nx7QjWhEeUa91oEav7GKEa0seQa8BVO8FKEZ7s4ZK03iWuvLyXj59P7t7sKq2qbOyj9s03nxjtI2yr78kt115qycDVOd3Kmf9JtWVGr2vtZqpr2Fw4sYWJcXpR38iZjrMcxzkK8cG5Z7CnCwDQN83gNRJ8QniRAMpDUZ3u14YhjRO5tXZCW5TiBy0R8ZGhvyAY6qxFnUqStCjGn5ZjjZ9W5CGu5UPnviIfUC4oqX890G2AqIIO7egTfzKT6KXFYWAaX8GYQqBDyDICscLsWBTx9HlJnuMGMHWO5cHVwzq0SSfBUm, libwx_baseu-2.8.so.0(WXU_2.8), libwx_gtk2u_adv-2.8.so.0 >= set:on2Dt0, libwx_gtk2u_adv-2.8.so.0(WXU_2.8), libwx_gtk2u_core-2.8.so.0 >= set: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, libwx_gtk2u_core-2.8.so.0(WXU_2.8), libwx_gtk2u_core-2.8.so.0(WXU_2.8.5), rtld(GNU_HASH), rtld(GNU_UNIQUE) Requires(rpmlib): rpmlib(SetVersions) Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.atY2m6 Creating openbabel-debuginfo package Processing files: libopenbabel-2.4.1-alt4 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.4Izp0N find-provides: running scripts (alternatives,debuginfo,gir,lib,pam,perl,pkgconfig,python,shell,typelib) lib.prov: /usr/src/tmp/openbabel-buildroot/usr/lib/libinchi.so.0: 901 symbols, 20 bpp warning: hash collision: RemoveLastGroupFromBnStruct x_close_line lib.prov: /usr/src/tmp/openbabel-buildroot/usr/lib/libopenbabel.so.5: 3030 symbols, 22 bpp warning: hash collision: _ZN9OpenBabel8OBLocaleD1Ev _ZNSt6vectorIPN9OpenBabel6OBAtomESaIS2_EEaSERKS4_ Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.IbzzdT find-requires: running scripts (cpp,debuginfo,files,gir-js,gir-python,gir,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks,systemd-services,typelib) Provides: libinchi.so.0 = set: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, libopenbabel.so.5 = set: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 Requires: libc.so.6(GLIBC_2.0), libc.so.6(GLIBC_2.1), libc.so.6(GLIBC_2.1.3), libc.so.6(GLIBC_2.2), libc.so.6(GLIBC_2.3), libc.so.6(GLIBC_2.3.4), libc.so.6(GLIBC_2.4), libcairo.so.2 >= set:mhZ4b5NOIyQ8NQ17Dc0feE777Zjk0473rgDULVHEZmWwI1f0wjkZuwnrUfBk90v8XZc0, libdl.so.2(GLIBC_2.0), libdl.so.2(GLIBC_2.1), libgcc_s.so.1(GCC_3.0), libgcc_s.so.1(GCC_3.4), libgcc_s.so.1(GLIBC_2.0), libm.so.6(GLIBC_2.0), libm.so.6(GLIBC_2.1), libstdc++.so.6(CXXABI_1.3), libstdc++.so.6(CXXABI_1.3.8), libstdc++.so.6(CXXABI_1.3.9), libstdc++.so.6(GLIBCXX_3.4), libstdc++.so.6(GLIBCXX_3.4.11), libstdc++.so.6(GLIBCXX_3.4.15), libstdc++.so.6(GLIBCXX_3.4.20), libstdc++.so.6(GLIBCXX_3.4.21), libstdc++.so.6(GLIBCXX_3.4.5), libstdc++.so.6(GLIBCXX_3.4.9), libxml2.so.2 >= set:oifKYClhgDOqsHvQHTqghpZjZhYHWvoUeQ1SsoPjAmxIBQqtrxV4Ci1ZmZ5pFWRwsE7VJfSzWZpquEjesOiuXp1iKnNCwPSRxzODZGTR2, libxml2.so.2(LIBXML2_2.4.30), libxml2.so.2(LIBXML2_2.5.0), libxml2.so.2(LIBXML2_2.6.0), libxml2.so.2(LIBXML2_2.6.5), libz.so.1 >= set:kgb6dgbWdAhpAO8J790ZdMxZd4, rtld(GNU_HASH), rtld(GNU_UNIQUE) Requires(rpmlib): rpmlib(SetVersions) Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.MkCkHK Creating libopenbabel-debuginfo package Processing files: libopenbabel-devel-2.4.1-alt4 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.psf9GZ find-provides: running scripts (alternatives,debuginfo,gir,lib,pam,perl,pkgconfig,python,shell,typelib) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.F9N1lL find-requires: running scripts (cpp,debuginfo,files,gir-js,gir-python,gir,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks,systemd-services,typelib) /usr/src/tmp/openbabel-buildroot/usr/include/openbabel-2.0/openbabel/op.h:23:10: fatal error: string: No such file or directory #include ^~~~~~~~ compilation terminated. cpp.req: /usr/src/tmp/openbabel-buildroot/usr/include/openbabel-2.0/openbabel/op.h: cpp failed, trying c++ mode /usr/src/tmp/openbabel-buildroot/usr/include/openbabel-2.0/openbabel/xml.h:25:10: fatal error: libxml/xmlreader.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/openbabel-buildroot/usr/include/openbabel-2.0/openbabel/xml.h: cpp failed /usr/src/tmp/openbabel-buildroot/usr/include/openbabel-2.0/openbabel/inchiformat.h:25:10: fatal error: inchi_api.h: No such file or directory #include "inchi_api.h" ^~~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/openbabel-buildroot/usr/include/openbabel-2.0/openbabel/inchiformat.h: cpp failed /usr/src/tmp/openbabel-buildroot/usr/include/openbabel-2.0/openbabel/math/align.h:26:10: fatal error: Eigen/Core: No such file or directory #include ^~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/openbabel-buildroot/usr/include/openbabel-2.0/openbabel/math/align.h: cpp failed Provides: pkgconfig(openbabel-2.0) = 2.4.1 Requires: libopenbabel = 2.4.1-alt4, /usr/lib/libinchi.so.0, /usr/lib/libopenbabel.so.5, /usr/lib/pkgconfig Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.tbhi00 Processing files: python-module-openbabel-2.4.1-alt4 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.8XWdrP find-provides: running scripts (alternatives,debuginfo,gir,lib,pam,perl,pkgconfig,python,shell,typelib) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.dvRKR1 find-requires: running scripts (cpp,debuginfo,files,gir-js,gir-python,gir,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks,systemd-services,typelib) python.req: /usr/src/tmp/openbabel-buildroot/usr/lib/python2.7/site-packages/openbabel.py: skipping sys /usr/lib/rpm/python.req.py: /usr/src/tmp/openbabel-buildroot/usr/lib/python2.7/site-packages/openbabel.py: line=4 IGNORE (for REQ=slight and deep=12) module=dl /usr/lib/rpm/python.req.py: /usr/src/tmp/openbabel-buildroot/usr/lib/python2.7/site-packages/openbabel.py: line=6 IGNORE (for REQ=slight and deep=12) module=DLFCN python.req: /usr/src/tmp/openbabel-buildroot/usr/lib/python2.7/site-packages/openbabel.py: skipping sys /usr/lib/rpm/python.req.py: /usr/src/tmp/openbabel-buildroot/usr/lib/python2.7/site-packages/openbabel.py: line=22 IGNORE (for REQ=slight and deep=8) module=new /usr/lib/rpm/python.req.py: /usr/src/tmp/openbabel-buildroot/usr/lib/python2.7/site-packages/openbabel.py: line=25 IGNORE (for REQ=slight and deep=12) module=importlib /usr/lib/rpm/python.req.py: /usr/src/tmp/openbabel-buildroot/usr/lib/python2.7/site-packages/openbabel.py: line=36 IGNORE (for REQ=slight and deep=12) module=os /usr/lib/rpm/python.req.py: /usr/src/tmp/openbabel-buildroot/usr/lib/python2.7/site-packages/openbabel.py: line=37 IGNORE (for REQ=slight and deep=12) module=imp /usr/lib/rpm/python.req.py: /usr/src/tmp/openbabel-buildroot/usr/lib/python2.7/site-packages/openbabel.py: line=42 IGNORE (for REQ=slight and deep=16) module=_openbabel /usr/lib/rpm/python.req.py: /usr/src/tmp/openbabel-buildroot/usr/lib/python2.7/site-packages/openbabel.py: line=53 IGNORE (for REQ=slight and deep=8) module=_openbabel /usr/lib/rpm/python.req.py: /usr/src/tmp/openbabel-buildroot/usr/lib/python2.7/site-packages/openbabel.py: line=61 IGNORE (for REQ=slight and deep=8) module=builtins /usr/lib/rpm/python.req.py: /usr/src/tmp/openbabel-buildroot/usr/lib/python2.7/site-packages/openbabel.py: line=63 IGNORE (for REQ=slight and deep=8) module=__builtin__ python.req: /usr/src/tmp/openbabel-buildroot/usr/lib/python2.7/site-packages/pybel.py: skipping sys /usr/lib/rpm/python.req.py: /usr/src/tmp/openbabel-buildroot/usr/lib/python2.7/site-packages/pybel.py: line=29 IGNORE (for REQ=slight and deep=8) module=org /usr/lib/rpm/python.req.py: /usr/src/tmp/openbabel-buildroot/usr/lib/python2.7/site-packages/pybel.py: line=30 IGNORE (for REQ=slight and deep=8) module=java /usr/lib/rpm/python.req.py: /usr/src/tmp/openbabel-buildroot/usr/lib/python2.7/site-packages/pybel.py: line=34 IGNORE (for REQ=slight and deep=8) module=javax /usr/lib/rpm/python.req.py: /usr/src/tmp/openbabel-buildroot/usr/lib/python2.7/site-packages/pybel.py: line=36 IGNORE (for REQ=slight and deep=8) module=System /usr/lib/rpm/python.req.py: /usr/src/tmp/openbabel-buildroot/usr/lib/python2.7/site-packages/pybel.py: line=37 IGNORE (for REQ=slight and deep=8) module=clr /usr/lib/rpm/python.req.py: /usr/src/tmp/openbabel-buildroot/usr/lib/python2.7/site-packages/pybel.py: line=41 IGNORE (for REQ=slight and deep=8) module=System /usr/lib/rpm/python.req.py: /usr/src/tmp/openbabel-buildroot/usr/lib/python2.7/site-packages/pybel.py: line=42 IGNORE (for REQ=slight and deep=8) module=System /usr/lib/rpm/python.req.py: /usr/src/tmp/openbabel-buildroot/usr/lib/python2.7/site-packages/pybel.py: line=43 IGNORE (for REQ=slight and deep=8) module=System /usr/lib/rpm/python.req.py: /usr/src/tmp/openbabel-buildroot/usr/lib/python2.7/site-packages/pybel.py: line=49 IGNORE (for REQ=slight and deep=8) module=OpenBabel /usr/lib/rpm/python.req.py: /usr/src/tmp/openbabel-buildroot/usr/lib/python2.7/site-packages/pybel.py: line=53 IGNORE (for REQ=slight and deep=8) module=openbabel /usr/lib/rpm/python.req.py: /usr/src/tmp/openbabel-buildroot/usr/lib/python2.7/site-packages/pybel.py: line=56 IGNORE (for REQ=slight and deep=12) module=Tkinter /usr/lib/rpm/python.req.py: /usr/src/tmp/openbabel-buildroot/usr/lib/python2.7/site-packages/pybel.py: line=57 IGNORE (for REQ=slight and deep=12) module=Image /usr/lib/rpm/python.req.py: /usr/src/tmp/openbabel-buildroot/usr/lib/python2.7/site-packages/pybel.py: line=58 IGNORE (for REQ=slight and deep=12) module=ImageTk /usr/lib/rpm/python.req.py: /usr/src/tmp/openbabel-buildroot/usr/lib/python2.7/site-packages/pybel.py: line=430 IGNORE (for REQ=slight and deep=15) module=imolecule /usr/lib/rpm/python.req.py: /usr/src/tmp/openbabel-buildroot/usr/lib/python2.7/site-packages/pybel.py: line=1057 IGNORE (for REQ=slight and deep=8) module=doctest Provides: python2.7(_openbabel), python2.7(openbabel), python2.7(pybel) Requires: libopenbabel = 2.4.1-alt4, /usr/lib/python2.7/site-packages, libc.so.6(GLIBC_2.0), libc.so.6(GLIBC_2.1.3), libc.so.6(GLIBC_2.3.4), libc.so.6(GLIBC_2.4), libgcc_s.so.1(GCC_3.0), libgcc_s.so.1(GCC_3.4), libm.so.6(GLIBC_2.0), libm.so.6(GLIBC_2.1), libopenbabel.so.5 >= set: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, libpython2.7.so.1.0 >= set:ohlglTJlmNhqAG834zqkWOVIt5hanis8lkQheWv7xJFOIAZiFtnLLYm1GzjsDrFPXBFTQFIG1zlphDCHPglAqyIMMZlZjPIMzsCvQDAtKQ7qcr8r6Ye2gm3OendY3B90KiT2dVMB421aX1gkZ7Zcso0GiYQPJsxtsUfYciwAeGM7J3RvII2qTfZeHrNqyZxhXCAW1usVE2snzzFuT3QHJCAPKwbpLxh3, libstdc++.so.6(CXXABI_1.3), libstdc++.so.6(CXXABI_1.3.8), libstdc++.so.6(CXXABI_1.3.9), libstdc++.so.6(GLIBCXX_3.4), libstdc++.so.6(GLIBCXX_3.4.11), libstdc++.so.6(GLIBCXX_3.4.15), libstdc++.so.6(GLIBCXX_3.4.20), libstdc++.so.6(GLIBCXX_3.4.21), libstdc++.so.6(GLIBCXX_3.4.9), python-modules, python2.7(json), python2.7(xml), rtld(GNU_HASH), rtld(GNU_UNIQUE) Requires(rpmlib): rpmlib(SetVersions) Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.qcsi3K Creating python-module-openbabel-debuginfo package Processing files: openbabel-debuginfo-2.4.1-alt4 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.TQEmQS find-provides: running scripts (debuginfo) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.PZ8b3u find-requires: running scripts (debuginfo) Requires: openbabel = 2.4.1-alt4, /usr/lib/debug/lib/ld-linux.so.2.debug, debug(libc.so.6), debug(libgcc_s.so.1), debug(libopenbabel.so.5), debug(libstdc++.so.6), debug(libwx_baseu-2.8.so.0), debug(libwx_gtk2u_adv-2.8.so.0), debug(libwx_gtk2u_core-2.8.so.0) Processing files: libopenbabel-debuginfo-2.4.1-alt4 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.j867Xu find-provides: running scripts (debuginfo) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.XU4Ume find-requires: running scripts (debuginfo) Provides: debug(libinchi.so.0), debug(libopenbabel.so.5) Requires: libopenbabel = 2.4.1-alt4, debug(libc.so.6), debug(libcairo.so.2), debug(libdl.so.2), debug(libgcc_s.so.1), debug(libm.so.6), debug(libstdc++.so.6), debug(libxml2.so.2), debug(libz.so.1) Processing files: python-module-openbabel-debuginfo-2.4.1-alt4 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.r2e28H find-provides: running scripts (debuginfo) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.Amj4kG find-requires: running scripts (debuginfo) Requires: python-module-openbabel = 2.4.1-alt4, debug(libc.so.6), debug(libgcc_s.so.1), debug(libm.so.6), debug(libopenbabel.so.5), debug(libpython2.7.so.1.0), debug(libstdc++.so.6) Adding to openbabel-debuginfo a strict dependency on openbabel Adding to libopenbabel-devel a strict dependency on libopenbabel Adding to python-module-openbabel a strict dependency on libopenbabel Adding to libopenbabel-debuginfo a strict dependency on libopenbabel Adding to python-module-openbabel-debuginfo a strict dependency on python-module-openbabel Adding to openbabel a strict dependency on libopenbabel Adding to openbabel-debuginfo a strict dependency on libopenbabel-debuginfo Adding to python-module-openbabel-debuginfo a strict dependency on libopenbabel-debuginfo Removing from openbabel-debuginfo 30 sources provided by libopenbabel-debuginfo also prunning dir /usr/src/debug/openbabel-2.4.1/include/openbabel/math also prunning dir /usr/src/debug/openbabel-2.4.1/include/openbabel/stereo also prunning dir /usr/src/debug/openbabel-2.4.1/include/openbabel also prunning dir /usr/src/debug/openbabel-2.4.1/include Removing from python-module-openbabel-debuginfo 54 sources provided by libopenbabel-debuginfo also prunning dir /usr/src/debug/openbabel-2.4.1/include/openbabel/math Removing 1 extra deps from openbabel due to dependency on libopenbabel Removing 2 extra deps from libopenbabel-devel due to dependency on libopenbabel Removing 1 extra deps from python-module-openbabel due to dependency on libopenbabel Removing 1 extra deps from openbabel-debuginfo due to dependency on libopenbabel-debuginfo Removing 1 extra deps from python-module-openbabel-debuginfo due to dependency on libopenbabel-debuginfo Removing 17 extra deps from openbabel due to repentancy on libopenbabel Removing 20 extra deps from python-module-openbabel due to repentancy on libopenbabel Removing 3 extra deps from openbabel-debuginfo due to repentancy on libopenbabel-debuginfo Removing 4 extra deps from python-module-openbabel-debuginfo due to repentancy on libopenbabel-debuginfo Wrote: /usr/src/RPM/RPMS/i586/openbabel-2.4.1-alt4.i586.rpm Wrote: /usr/src/RPM/RPMS/i586/libopenbabel-2.4.1-alt4.i586.rpm Wrote: /usr/src/RPM/RPMS/i586/libopenbabel-devel-2.4.1-alt4.i586.rpm Wrote: /usr/src/RPM/RPMS/i586/python-module-openbabel-2.4.1-alt4.i586.rpm Wrote: /usr/src/RPM/RPMS/i586/openbabel-debuginfo-2.4.1-alt4.i586.rpm Wrote: /usr/src/RPM/RPMS/i586/libopenbabel-debuginfo-2.4.1-alt4.i586.rpm Wrote: /usr/src/RPM/RPMS/i586/python-module-openbabel-debuginfo-2.4.1-alt4.i586.rpm 2090.84user 183.70system 11:03.62elapsed 342%CPU (0avgtext+0avgdata 1007524maxresident)k 0inputs+0outputs (0major+31093932minor)pagefaults 0swaps 2117.01user 193.25system 11:42.86elapsed 328%CPU (0avgtext+0avgdata 1007524maxresident)k 808inputs+0outputs (0major+31626786minor)pagefaults 0swaps