<86>Aug 16 10:40:03 userdel[817472]: delete user 'rooter' <86>Aug 16 10:40:03 groupadd[817521]: group added to /etc/group: name=rooter, GID=597 <86>Aug 16 10:40:03 groupadd[817521]: group added to /etc/gshadow: name=rooter <86>Aug 16 10:40:03 groupadd[817521]: new group: name=rooter, GID=597 <86>Aug 16 10:40:03 useradd[817539]: new user: name=rooter, UID=597, GID=597, home=/root, shell=/bin/bash <86>Aug 16 10:40:03 userdel[817556]: delete user 'builder' <86>Aug 16 10:40:03 userdel[817556]: removed group 'builder' owned by 'builder' <86>Aug 16 10:40:03 userdel[817556]: removed shadow group 'builder' owned by 'builder' <86>Aug 16 10:40:03 groupadd[817570]: group added to /etc/group: name=builder, GID=598 <86>Aug 16 10:40:03 groupadd[817570]: group added to /etc/gshadow: name=builder <86>Aug 16 10:40:03 groupadd[817570]: new group: name=builder, GID=598 <86>Aug 16 10:40:03 useradd[817583]: new user: name=builder, UID=598, GID=598, home=/usr/src, shell=/bin/bash warning: user mike does not exist - using root warning: group mike does not exist - using root warning: user mike does not exist - using root warning: group mike does not exist - using root warning: user mike does not exist - using root warning: group mike does not exist - using root warning: user mike does not exist - using root warning: group mike does not exist - using root warning: user mike does not exist - using root warning: group mike does not exist - using root warning: user mike does not exist - using root warning: group mike does not exist - using root warning: user mike does not exist - using root warning: group mike does not exist - using root warning: user mike does not exist - using root warning: group mike does not exist - using root warning: user mike does not exist - using root warning: group mike does not exist - using root <13>Aug 16 10:40:09 rpmi: xorg-proto-devel-2018.4-alt3 1527685079 installed <13>Aug 16 10:40:09 rpmi: libXau-1.0.9-alt1 sisyphus+223149.200.2.1 1551268152 installed <13>Aug 16 10:40:09 rpmi: libCVector-1.0.3.1-alt2 1316809891 installed <13>Aug 16 10:40:09 rpmi: libquadmath0-8.4.1-alt0.p9.1 p9+247559.100.2.1 1585587912 installed <13>Aug 16 10:40:09 rpmi: libgfortran5-8.4.1-alt0.p9.1 p9+247559.100.2.1 1585587912 installed <13>Aug 16 10:40:09 rpmi: libCBFlib-0.9.2.3-alt2 sisyphus+223504.100.1.1 1551630304 installed <13>Aug 16 10:40:09 rpmi: libquadmath8-devel-8.4.1-alt0.p9.1 p9+247559.100.2.1 1585587912 installed <13>Aug 16 10:40:09 rpmi: libCVector-devel-1.0.3.1-alt2 1316809891 installed <13>Aug 16 10:40:09 rpmi: libNearTree-5.1.1-alt1 sisyphus+220437.100.1.1 1549114851 installed <13>Aug 16 10:40:09 rpmi: libXau-devel-1.0.9-alt1 sisyphus+223149.200.2.1 1551268152 installed <13>Aug 16 10:40:09 rpmi: gcc-fortran-common-1.4.23-alt1 sisyphus+221902.2500.4.1 1550596716 installed <13>Aug 16 10:40:09 rpmi: libgfortran8-devel-8.4.1-alt0.p9.1 p9+247559.100.2.1 1585587912 installed <13>Aug 16 10:40:09 rpmi: libX11-locales-3:1.6.7-alt1 sisyphus+226735.100.2.2 1554615009 installed <13>Aug 16 10:40:09 rpmi: libXdmcp-1.1.3-alt1 sisyphus+225206.600.1.2 1552949353 installed <13>Aug 16 10:40:09 rpmi: libxcb-1.13.1-alt1 sisyphus+226527.100.2.2 1554593801 installed <13>Aug 16 10:40:09 rpmi: libX11-3:1.6.7-alt1 sisyphus+226735.100.2.2 1554615005 installed <13>Aug 16 10:40:09 rpmi: libXext-1.3.4-alt1 sisyphus+225206.700.1.2 1552949429 installed <13>Aug 16 10:40:09 rpmi: libXi-1.7.9-alt2 sisyphus+226377.100.1.2 1554260260 installed <13>Aug 16 10:40:09 rpmi: libXfixes-5.0.3-alt1 sisyphus+226736.100.2.2 1554614841 installed <13>Aug 16 10:40:12 rpmi: libxcb-devel-1.13.1-alt1 sisyphus+226527.100.2.2 1554593801 installed <13>Aug 16 10:40:12 rpmi: libX11-devel-3:1.6.7-alt1 sisyphus+226735.100.2.2 1554615005 installed <13>Aug 16 10:40:12 rpmi: libXext-devel-1.3.4-alt1 sisyphus+225206.700.1.2 1552949429 installed <13>Aug 16 10:40:12 rpmi: libXfixes-devel-5.0.3-alt1 sisyphus+226736.100.2.2 1554614841 installed <13>Aug 16 10:40:12 rpmi: libCQRlib-1.1.2-alt2 1316809838 installed <13>Aug 16 10:40:12 rpmi: libCQRlib-devel-1.1.2-alt2 1316809838 installed <13>Aug 16 10:40:12 rpmi: libXi-devel-1.7.9-alt2 sisyphus+226377.100.1.2 1554260260 installed <13>Aug 16 10:40:12 rpmi: libgfortran-devel-8-alt2 p9+246536.100.3.1 1582643803 installed <13>Aug 16 10:40:12 rpmi: libNearTree-devel-5.1.1-alt1 sisyphus+220437.100.1.1 1549114851 installed <13>Aug 16 10:40:12 rpmi: libCBFlib-devel-0.9.2.3-alt2 sisyphus+223504.100.1.1 1551630304 installed <13>Aug 16 10:40:12 rpmi: xorg-cf-files-1.0.6-alt1 1453137637 installed <13>Aug 16 10:40:12 rpmi: imake-1.0.7-alt3 1518797773 installed Building target platforms: i586 Building for target i586 Wrote: /usr/src/in/nosrpm/RasMol-2.7.5.2-alt4.nosrc.rpm Installing RasMol-2.7.5.2-alt4.src.rpm Building target platforms: i586 Building for target i586 Executing(%prep): /bin/sh -e /usr/src/tmp/rpm-tmp.90202 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + rm -rf RasMol-2.7.5.2 + echo 'Source #0 (rasmol-2.7.5.2-13May11.tar.gz):' Source #0 (rasmol-2.7.5.2-13May11.tar.gz): + /bin/tar -xf - + /bin/gzip -dc /usr/src/RPM/SOURCES/rasmol-2.7.5.2-13May11.tar.gz + cd RasMol-2.7.5.2 + /bin/chmod -c -Rf u+rwX,go-w . + echo 'Patch #0 (RasMol-2.7.5-gentoo-bundled-lib.patch):' Patch #0 (RasMol-2.7.5-gentoo-bundled-lib.patch): + /usr/bin/patch -p1 patching file src/Imakefile patching file src/Makefile.in + sed -i 's,^#include \(<\|"\)cbf,#include \1cbf/cbf,' src/cif.h src/maps.c + exit 0 Executing(%build): /bin/sh -e /usr/src/tmp/rpm-tmp.4983 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd RasMol-2.7.5.2 + CFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2 -march=i586 -mtune=generic' + pushd src ~/RPM/BUILD/RasMol-2.7.5.2/src ~/RPM/BUILD/RasMol-2.7.5.2 + xmkmf imake -DUseInstalled -I/usr/share/X11/config In file included from /usr/share/X11/config/Imake.tmpl:2145, from Imakefile.c:34: /usr/share/X11/config/X11.rules:39: warning: "XBinDir" redefined # define XBinDir $(XPROJECTROOT)/bin In file included from /usr/share/X11/config/site.def:155, from /usr/share/X11/config/Imake.tmpl:116, from Imakefile.c:34: /usr/share/X11/config/host.def:14: note: this is the location of the previous definition #define XBinDir /usr/bin In file included from /usr/share/X11/config/Imake.tmpl:2145, from Imakefile.c:34: /usr/share/X11/config/X11.rules:47: warning: "XUsrLibDirPath" redefined # define XUsrLibDirPath $(USRLIBDIR):$(XPROJECTROOT)/lib In file included from /usr/share/X11/config/site.def:155, from /usr/share/X11/config/Imake.tmpl:116, from Imakefile.c:34: /usr/share/X11/config/host.def:16: note: this is the location of the previous definition #define XUsrLibDirPath /usr/lib + subst s/-mcpu=i686/-mtune=i686/ Makefile + make clean rasmol DEPTHDEF=-DEIGHTBIT make: Entering directory '/usr/src/RPM/BUILD/RasMol-2.7.5.2/src' rm -f rasmol._man rm -f rasmol rm -f gtkui.h rasmol.man rm -f *.CKP *.ln *.BAK *.bak *.o core errs ,* *~ *.a .emacs_* tags TAGS make.log MakeOut "#"* gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o rasmol.o rasmol.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdlib.h:25, from rasmol.c:203: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ rasmol.c:1170:15: warning: 'DetermineRasMolPath' defined but not used [-Wunused-function] static size_t DetermineRasMolPath( char * rpath, size_t maxlen) { ^~~~~~~~~~~~~~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o molecule.o molecule.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from molecule.c:220: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ molecule.c: In function 'CreateSurfaceBonds': molecule.c:2152:27: warning: variable 'dz' set but not used [-Wunused-but-set-variable] register Long dx, dy, dz; ^~ molecule.c:2152:23: warning: variable 'dy' set but not used [-Wunused-but-set-variable] register Long dx, dy, dz; ^~ molecule.c:2152:19: warning: variable 'dx' set but not used [-Wunused-but-set-variable] register Long dx, dy, dz; ^~ At top level: molecule.c:1722:13: warning: 'TestSurface' defined but not used [-Wunused-function] static void TestSurface( RAtom __far *sptr, RAtom __far *dptr ) ^~~~~~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o abstree.o abstree.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from abstree.c:81: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cmndline.o cmndline.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from cmndline.c:82: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ cmndline.c: In function 'ProcessMouseMove': cmndline.c:929:7: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for (index=0; index<10; index++) ^~~ cmndline.c:931:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' SaveQuat.w = DialQRot.w; ^~~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o command.o command.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from command.c:91: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ command.c: In function 'Find_Symbol_Definition': command.c:1072:18: warning: variable 'prevsymbol' set but not used [-Wunused-but-set-variable] Symbol __far * prevsymbol; ^~~~~~~~~~ command.c: In function 'PlayMovieFrame': command.c:1493:8: warning: variable 'checkfile' set but not used [-Wunused-but-set-variable] int checkfile; ^~~~~~~~~ command.c: In function 'ParseExpression': command.c:2215:40: warning: this 'if' clause does not guard... [-Wmisleading-indentation] case(SheetTok): if( Info.laddercount < 0 ) ^~ command.c:2217:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' pred = PredSheet; ^~~~ command.c:2219:40: warning: this 'if' clause does not guard... [-Wmisleading-indentation] case(TurnTok): if( Info.turncount < 0 ) ^~ command.c:2221:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' pred = PredTurn; ^~~~ command.c:2223:40: warning: this 'if' clause does not guard... [-Wmisleading-indentation] case(CystineTok): if( Info.ssbondcount < 0 ) ^~ command.c:2225:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' pred = PredCystine; ^~~~ command.c:2227:40: warning: this 'if' clause does not guard... [-Wmisleading-indentation] case(CisBondedTok):if( Info.cisbondcount<0 ) ^~ command.c:2229:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' pred = PredCisBond; ^~~~ command.c:2328:31: warning: this 'if' clause does not guard... [-Wmisleading-indentation] case('-'): if( NextIf(NumberTok,ErrNotNum) ) ^~ command.c:2330:21: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' return( ParseRange(True) ); ^~~~~~ command.c: In function 'ReadAtomSelection': command.c:4261:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for( QAtom=QGroup->alist; QAtom; QAtom=QAtom->anext ) ^~~ command.c:4263:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' SelectCount = 0; ^~~~~~~~~~~ command.c:4279:4: warning: value computed is not used [-Wunused-value] *TokenPtr--; ^~~~~~~~~~~ command.c:4296:6: warning: value computed is not used [-Wunused-value] *TokenPtr--; ^~~~~~~~~~~ command.c:4337:13: warning: value computed is not used [-Wunused-value] *TokenPtr++; ^~~~~~~~~~~ command.c: In function 'ApplyMapAtomSelection': command.c:4752:12: warning: unused variable 'visits' [-Wunused-variable] size_t visits; ^~~~~~ command.c: In function 'ExecuteCommandOne': command.c:7488:27: warning: this 'for' clause does not guard... [-Wmisleading-indentation] case(ResetTok): for( i=0; i<10; i++ ) ^~~ command.c:7490:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' ReDrawFlag |= RFDials; ^~~~~~~~~~ command.c:7501:27: warning: this 'if' clause does not guard... [-Wmisleading-indentation] case(HelpTok): if( !HelpFileName ) ^~ command.c:7503:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if( HelpInfo ) ^~ command.c: In function 'ExecuteIPCCommand': command.c:7964:16: warning: this 'if' clause does not guard... [-Wmisleading-indentation] } else if( *ptr=='[' ) ^~ command.c:7967:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if( len < MAXBUFFLEN-1 ) ^~ At top level: command.c:902:12: warning: 'Define_Symbol' defined but not used [-Wunused-function] static int Define_Symbol(const char __far * string, const char __far * definition) { ^~~~~~~~~~~~~ command.c: In function 'FetchFile': command.c:678:54: warning: '%s' directive writing up to 1023 bytes into a region of size 105 [-Wformat-overflow=] sprintf(buffer,"trap \"\" 13; gzip -cdq '%s' 2> /dev/null\n", ^~ DataFileName); ~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from command.c:118: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 39 and 1062 bytes into a destination of size 128 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ command.c:674:58: warning: '%s' directive writing up to 1023 bytes into a region of size 101 [-Wformat-overflow=] sprintf(buffer,"trap \"\" 13; uncompress -c '%s' 2> /dev/null\n", ^~ DataFileName); ~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from command.c:118: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 43 and 1066 bytes into a destination of size 128 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ command.c: In function 'ApplyMapShow': command.c:5365:123: warning: ' ' directive writing 1 byte into a region of size between 0 and 40 [-Wformat-overflow=] sprintf(buffer," distance to selected van der Waals surface:\n mean %#g, min %#g, max %#g, esd %#g\n", ^~ In file included from /usr/include/stdio.h:862, from command.c:118: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 95 and 139 bytes into a destination of size 133 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ command.c:5375:123: warning: ' ' directive writing 1 byte into a region of size between 0 and 40 [-Wformat-overflow=] sprintf(buffer," distance to selected Lee-Richards surface:\n mean %#g, min %#g, max %#g, esd %#g\n", ^~ In file included from /usr/include/stdio.h:862, from command.c:118: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 95 and 139 bytes into a destination of size 133 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ command.c: In function 'ExecuteCommandOne': command.c:5906:60: warning: '%g' directive writing between 1 and 13 bytes into a region of size between 6 and 18 [-Wformat-overflow=] sprintf(buffer," Time: %g, Delta Time: %g\n", CommandTime, CommandTime-prevtime); ^~ command.c:5906:36: note: assuming directive output of 12 bytes sprintf(buffer," Time: %g, Delta Time: %g\n", CommandTime, CommandTime-prevtime); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from command.c:118: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 25 and 49 bytes into a destination of size 40 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o transfor.o transfor.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from transfor.c:198: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ transfor.c: In function 'SetVanWaalRadius': transfor.c:559:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if( (ptr->irad)+iProbeRad>MaxAtomRadius ) ^~ transfor.c:561:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' ptr->flag |= ExpandFlag; ^~~ transfor.c:563:13: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if( ptr->irad>MaxAtomRadius ) ^~ transfor.c:565:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' ptr->flag &= ~ExpandFlag; ^~~ transfor.c: In function 'ColourPointAttrib': transfor.c:2282:33: warning: variable 'result' set but not used [-Wunused-but-set-variable] register int i,shade,nshade,result; ^~~~~~ transfor.c: In function 'StructColourAttrib': transfor.c:3064:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if( !Database ) ^~ transfor.c:3066:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' ColourBondNone(); ^~~~~~~~~~~~~~ transfor.c: In function 'ScaleColourMap': transfor.c:1702:17: warning: array subscript 15 is above array bounds of 'ShadeRef[15]' {aka 'struct [15]'} [-Warray-bounds] { ScaleRef[i].r = 0; ~~~~~~~~^~~ transfor.c:1703:17: warning: array subscript 15 is above array bounds of 'ShadeRef[15]' {aka 'struct [15]'} [-Warray-bounds] ScaleRef[i].g = 0; ~~~~~~~~^~~ transfor.c:1704:17: warning: array subscript 15 is above array bounds of 'ShadeRef[15]' {aka 'struct [15]'} [-Warray-bounds] ScaleRef[i].b = 255; ~~~~~~~~^~~ transfor.c:1705:17: warning: array subscript 15 is above array bounds of 'ShadeRef[15]' {aka 'struct [15]'} [-Warray-bounds] ScaleRef[i].shade = 0; ~~~~~~~~^~~ transfor.c:1706:17: warning: array subscript 15 is above array bounds of 'ShadeRef[15]' {aka 'struct [15]'} [-Warray-bounds] ScaleRef[i].col = 0; ~~~~~~~~^~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o render.o render.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from render.c:189: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ render.c: In function 'PickAtoms': render.c:2076:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if( !QAtom ) ^~ render.c:2079:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if( PickMode==PickCentr && shift ) ^~ render.c:2173:15: warning: this 'else' clause does not guard... [-Wmisleading-indentation] } else ^~~~ render.c:2175:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' QAtom->label = label; ^~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o repres.o repres.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from repres.c:234: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ repres.c: In function 'TestSolventDot': repres.c:987:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if( lx < 0 ) lx = 0; if( ux >= VOXORDER ) ux = VOXORDER-1; ^~ repres.c:987:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if( lx < 0 ) lx = 0; if( ux >= VOXORDER ) ux = VOXORDER-1; ^~ repres.c:988:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if( ly < 0 ) ly = 0; if( uy >= VOXORDER ) uy = VOXORDER-1; ^~ repres.c:988:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if( ly < 0 ) ly = 0; if( uy >= VOXORDER ) uy = VOXORDER-1; ^~ repres.c:989:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if( lz < 0 ) lz = 0; if( uz >= VOXORDER ) uz = VOXORDER-1; ^~ repres.c:989:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if( lz < 0 ) lz = 0; if( uz >= VOXORDER ) uz = VOXORDER-1; ^~ repres.c: In function 'CalculateSurface': repres.c:1113:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if( !Database ) ^~ repres.c:1116:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' DotCount = density; ^~~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o pixutils.o pixutils.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from pixutils.c:183: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ pixutils.c: In function 'ClipDashLine': pixutils.c:645:23: warning: variable 'ca' set but not used [-Wunused-but-set-variable] register Pixel c, ca, mid; ^~ pixutils.c: In function 'DrawCircle': pixutils.c:2606:6: warning: variable 'updown' set but not used [-Wunused-but-set-variable] int updown, ifirst; ^~~~~~ pixutils.c: In function 'DrawCylinderCaps': pixutils.c:2986:21: warning: variable 'alts' set but not used [-Wunused-but-set-variable] register int p, alts, altc; ^~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o outfile.o outfile.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from outfile.c:170: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ outfile.c: In function 'WriteVectDots': outfile.c:1998:24: warning: variable 'tump' set but not used [-Wunused-but-set-variable] register int temp, tump; ^~~~ outfile.c:1998:18: warning: variable 'temp' set but not used [-Wunused-but-set-variable] register int temp, tump; ^~~~ outfile.c: In function 'WriteVectMapPoints': outfile.c:2038:24: warning: variable 'tump' set but not used [-Wunused-but-set-variable] register int temp, tump; ^~~~ outfile.c:2038:18: warning: variable 'temp' set but not used [-Wunused-but-set-variable] register int temp, tump; ^~~~ outfile.c: In function 'R3DSphere': outfile.c:2601:24: warning: variable 'z1' set but not used [-Wunused-but-set-variable] register Real x1, y1, z1; /* coordinates after rotation and translation*/ ^~ outfile.c:2601:20: warning: variable 'y1' set but not used [-Wunused-but-set-variable] register Real x1, y1, z1; /* coordinates after rotation and translation*/ ^~ outfile.c:2601:16: warning: variable 'x1' set but not used [-Wunused-but-set-variable] register Real x1, y1, z1; /* coordinates after rotation and translation*/ ^~ outfile.c: In function 'R3DStrandRibbon': outfile.c:2956:28: warning: variable 'qsz' set but not used [-Wunused-but-set-variable] register int qsx, qsy, qsz; ^~~ At top level: outfile.c:2082:13: warning: 'WriteVectMapBonds' defined but not used [-Wunused-function] static void WriteVectMapBonds( void) { ^~~~~~~~~~~~~~~~~ outfile.c: In function 'WriteR3DFile': outfile.c:2871:26: warning: '%s' directive writing up to 79 bytes into a region of size 22 [-Wformat-overflow=] sprintf((char *)name,"%s",buffer); ^~ ~~~~~~ In file included from /usr/include/stdio.h:862, from outfile.c:191: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 1 and 80 bytes into a destination of size 22 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o script.o script.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from script.c:164: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ script.c:2342:13: warning: 'WriteVRMLLine' defined but not used [-Wunused-function] static void WriteVRMLLine( int src, int dst, int shade, int *flag ) ^~~~~~~~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o infile.o infile.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from infile.c:196: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ infile.c: In function 'ApplyBondInfo': infile.c:671:14: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(aptr2=group2->alist; aptr2; aptr2=aptr2->anext) ^~~ infile.c:696:16: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' if (AtomNum1) break; ^~ infile.c: In function 'LoadXYZMolecule': infile.c:1365:13: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if( !FetchRecord(DataFile,Record) ) ^~ infile.c:1367:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' xpos = ypos = zpos = 0.0; ^~~~ infile.c: In function 'LoadCIFMolecule': infile.c:2210:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!cif_datablock_name (cif, &dbname)) ^~ infile.c:2212:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' Info.moleculename[55] = '\0'; ^~~~ infile.c:3232:13: warning: variable 'oNMRModel' set but not used [-Wunused-but-set-variable] int oNMRModel; ^~~~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o tokens.o tokens.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/string.h:26, from tokens.c:194: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cif_fract.o cif_fract.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from cif_fract.c:197: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cif.o cif.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from cif.c:278: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cif_ctonum.o cif_ctonum.c cif_ctonum.c:198: warning: "_USE_RASMOL_H_" redefined #define _USE_RASMOL_H_ : note: this is the location of the previous definition In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from cif_ctonum.c:200: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cif_stx.o cif_stx.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from cif_stx.c:227: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o multiple.o multiple.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from multiple.c:225: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o vector.o vector.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from vector.c:159: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o wbrotate.o wbrotate.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from wbrotate.c:201: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o langsel_unix.o langsel_unix.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from langsel_unix.c:114: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ langsel_unix.c: In function 'SwitchLang': langsel_unix.c:2347:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (Interactive) ^~ langsel_unix.c:2349:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (Language != lang) { ^~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o maps.o maps.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from maps.c:81: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ maps.c: In function 'SaveMapFile': maps.c:429:55: warning: variable 'fcmapmask_zbase' set but not used [-Wunused-but-set-variable] double fcmapmask_xbase=0., fcmapmask_ybase=0, fcmapmask_zbase=0.; ^~~~~~~~~~~~~~~ maps.c:429:36: warning: variable 'fcmapmask_ybase' set but not used [-Wunused-but-set-variable] double fcmapmask_xbase=0., fcmapmask_ybase=0, fcmapmask_zbase=0.; ^~~~~~~~~~~~~~~ maps.c:429:16: warning: variable 'fcmapmask_xbase' set but not used [-Wunused-but-set-variable] double fcmapmask_xbase=0., fcmapmask_ybase=0, fcmapmask_zbase=0.; ^~~~~~~~~~~~~~~ maps.c:428:48: warning: variable 'fcmap_zbase' set but not used [-Wunused-but-set-variable] double fcmap_xbase=0., fcmap_ybase=0., fcmap_zbase=0.; ^~~~~~~~~~~ maps.c:428:32: warning: variable 'fcmap_ybase' set but not used [-Wunused-but-set-variable] double fcmap_xbase=0., fcmap_ybase=0., fcmap_zbase=0.; ^~~~~~~~~~~ maps.c:428:16: warning: variable 'fcmap_xbase' set but not used [-Wunused-but-set-variable] double fcmap_xbase=0., fcmap_ybase=0., fcmap_zbase=0.; ^~~~~~~~~~~ maps.c: In function 'LoadCBFMapFile': maps.c:1758:12: warning: variable 'fcmapmask_xbase' set but not used [-Wunused-but-set-variable] double fcmapmask_xbase, fcmapmask_ybase, fcmapmask_zbase; ^~~~~~~~~~~~~~~ maps.c:1757:12: warning: variable 'fcmap_xbase' set but not used [-Wunused-but-set-variable] double fcmap_xbase, fcmap_ybase, fcmap_zbase; ^~~~~~~~~~~ maps.c:1756:12: warning: variable 'ocmapmask_xbase' set but not used [-Wunused-but-set-variable] double ocmapmask_xbase, ocmapmask_ybase, ocmapmask_zbase; ^~~~~~~~~~~~~~~ maps.c:1755:12: warning: variable 'ocmap_xbase' set but not used [-Wunused-but-set-variable] double ocmap_xbase, ocmap_ybase, ocmap_zbase; ^~~~~~~~~~~ maps.c:1754:12: warning: variable 'mapmask_xbase' set but not used [-Wunused-but-set-variable] Long mapmask_xbase, mapmask_ybase, mapmask_zbase; ^~~~~~~~~~~~~ maps.c:1753:12: warning: variable 'map_xbase' set but not used [-Wunused-but-set-variable] Long map_xbase, map_ybase, map_zbase; ^~~~~~~~~ maps.c: In function 'LoadCCP4MapFile': maps.c:2988:9: warning: variable 'rawelsize' set but not used [-Wunused-but-set-variable] int rawelsize; ^~~~~~~~~ In file included from maps.c:96: maps.c: In function 'map_points': maps.c:4575:42: warning: the address of 'gradient' will always evaluate as 'true' [-Waddress] MapPointm2o(map,mp,gradient); ^~~~~~~~ maps.h:187:10: note: in definition of macro 'MapPointm2o' if (gradient) { \ ^~~~~~~~ maps.c:4598:44: warning: the address of 'gradient' will always evaluate as 'true' [-Waddress] MapPointm2o(map,mp,gradient); ^~~~~~~~ maps.h:187:10: note: in definition of macro 'MapPointm2o' if (gradient) { \ ^~~~~~~~ maps.c:4399:12: warning: variable 'koffsets' set but not used [-Wunused-but-set-variable] Long koffsets[3][2]; /* The offsets back to the prior cells */ ^~~~~~~~ maps.c:4398:11: warning: variable 'odirs' set but not used [-Wunused-but-set-variable] int odirs[3][2]; /* {Y,Z}, {Z,X}, {X,Y} */ ^~~~~ maps.c:4396:39: warning: variable 'havebody' set but not used [-Wunused-but-set-variable] int haveedges[3], havefaces[3], havebody; ^~~~~~~~ maps.c: In function 'SaveMapFile': maps.c:394:51: warning: 'mapinfo' may be used uninitialized in this function [-Wmaybe-uninitialized] cbf_failnez (cbf_set_value(cbf,mapinfo->MapFile)) ^~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DEIGHTBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o x11win.o x11win.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdlib.h:25, from x11win.c:232: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ x11win.c: In function 'RasLoadQueryFontSet.constprop': x11win.c:758:59: warning: '%s' directive writing up to 254 bytes into a region of size 222 [-Wformat-overflow=] sprintf(buffer, "Missing charsets in MenuFontSet (%s) creation.\n", fontset_name); ^~ In file included from /usr/include/stdio.h:862, from x11win.c:235: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 46 and 300 bytes into a destination of size 255 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rm -f rasmol gcc -m32 -o rasmol -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -L/usr/lib -L/usr/lib rasmol.o molecule.o abstree.o cmndline.o command.o transfor.o render.o repres.o pixutils.o outfile.o script.o infile.o tokens.o cif_fract.o cif.o cif_ctonum.o cif_stx.o multiple.o vector.o wbrotate.o langsel_unix.o maps.o x11win.o -lm -lXi -lXext -lX11 -lcbf -lCQRlib -lCVector -lCNearTree -lgfortran make: Leaving directory '/usr/src/RPM/BUILD/RasMol-2.7.5.2/src' + mv rasmol rasmol-8bpp + make clean rasmol DEPTHDEF=-DSIXTEENBIT make: Entering directory '/usr/src/RPM/BUILD/RasMol-2.7.5.2/src' rm -f rasmol._man rm -f rasmol rm -f gtkui.h rasmol.man rm -f *.CKP *.ln *.BAK *.bak *.o core errs ,* *~ *.a .emacs_* tags TAGS make.log MakeOut "#"* gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o rasmol.o rasmol.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdlib.h:25, from rasmol.c:203: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ rasmol.c:1170:15: warning: 'DetermineRasMolPath' defined but not used [-Wunused-function] static size_t DetermineRasMolPath( char * rpath, size_t maxlen) { ^~~~~~~~~~~~~~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o molecule.o molecule.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from molecule.c:220: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ molecule.c: In function 'CreateSurfaceBonds': molecule.c:2152:27: warning: variable 'dz' set but not used [-Wunused-but-set-variable] register Long dx, dy, dz; ^~ molecule.c:2152:23: warning: variable 'dy' set but not used [-Wunused-but-set-variable] register Long dx, dy, dz; ^~ molecule.c:2152:19: warning: variable 'dx' set but not used [-Wunused-but-set-variable] register Long dx, dy, dz; ^~ At top level: molecule.c:1722:13: warning: 'TestSurface' defined but not used [-Wunused-function] static void TestSurface( RAtom __far *sptr, RAtom __far *dptr ) ^~~~~~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o abstree.o abstree.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from abstree.c:81: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cmndline.o cmndline.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from cmndline.c:82: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ cmndline.c: In function 'ProcessMouseMove': cmndline.c:929:7: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for (index=0; index<10; index++) ^~~ cmndline.c:931:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' SaveQuat.w = DialQRot.w; ^~~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o command.o command.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from command.c:91: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ command.c: In function 'Find_Symbol_Definition': command.c:1072:18: warning: variable 'prevsymbol' set but not used [-Wunused-but-set-variable] Symbol __far * prevsymbol; ^~~~~~~~~~ command.c: In function 'PlayMovieFrame': command.c:1493:8: warning: variable 'checkfile' set but not used [-Wunused-but-set-variable] int checkfile; ^~~~~~~~~ command.c: In function 'ParseExpression': command.c:2215:40: warning: this 'if' clause does not guard... [-Wmisleading-indentation] case(SheetTok): if( Info.laddercount < 0 ) ^~ command.c:2217:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' pred = PredSheet; ^~~~ command.c:2219:40: warning: this 'if' clause does not guard... [-Wmisleading-indentation] case(TurnTok): if( Info.turncount < 0 ) ^~ command.c:2221:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' pred = PredTurn; ^~~~ command.c:2223:40: warning: this 'if' clause does not guard... [-Wmisleading-indentation] case(CystineTok): if( Info.ssbondcount < 0 ) ^~ command.c:2225:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' pred = PredCystine; ^~~~ command.c:2227:40: warning: this 'if' clause does not guard... [-Wmisleading-indentation] case(CisBondedTok):if( Info.cisbondcount<0 ) ^~ command.c:2229:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' pred = PredCisBond; ^~~~ command.c:2328:31: warning: this 'if' clause does not guard... [-Wmisleading-indentation] case('-'): if( NextIf(NumberTok,ErrNotNum) ) ^~ command.c:2330:21: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' return( ParseRange(True) ); ^~~~~~ command.c: In function 'ReadAtomSelection': command.c:4261:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for( QAtom=QGroup->alist; QAtom; QAtom=QAtom->anext ) ^~~ command.c:4263:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' SelectCount = 0; ^~~~~~~~~~~ command.c:4279:4: warning: value computed is not used [-Wunused-value] *TokenPtr--; ^~~~~~~~~~~ command.c:4296:6: warning: value computed is not used [-Wunused-value] *TokenPtr--; ^~~~~~~~~~~ command.c:4337:13: warning: value computed is not used [-Wunused-value] *TokenPtr++; ^~~~~~~~~~~ command.c: In function 'ApplyMapAtomSelection': command.c:4752:12: warning: unused variable 'visits' [-Wunused-variable] size_t visits; ^~~~~~ command.c: In function 'ExecuteCommandOne': command.c:7488:27: warning: this 'for' clause does not guard... [-Wmisleading-indentation] case(ResetTok): for( i=0; i<10; i++ ) ^~~ command.c:7490:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' ReDrawFlag |= RFDials; ^~~~~~~~~~ command.c:7501:27: warning: this 'if' clause does not guard... [-Wmisleading-indentation] case(HelpTok): if( !HelpFileName ) ^~ command.c:7503:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if( HelpInfo ) ^~ command.c: In function 'ExecuteIPCCommand': command.c:7964:16: warning: this 'if' clause does not guard... [-Wmisleading-indentation] } else if( *ptr=='[' ) ^~ command.c:7967:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if( len < MAXBUFFLEN-1 ) ^~ At top level: command.c:902:12: warning: 'Define_Symbol' defined but not used [-Wunused-function] static int Define_Symbol(const char __far * string, const char __far * definition) { ^~~~~~~~~~~~~ command.c: In function 'FetchFile': command.c:678:54: warning: '%s' directive writing up to 1023 bytes into a region of size 105 [-Wformat-overflow=] sprintf(buffer,"trap \"\" 13; gzip -cdq '%s' 2> /dev/null\n", ^~ DataFileName); ~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from command.c:118: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 39 and 1062 bytes into a destination of size 128 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ command.c:674:58: warning: '%s' directive writing up to 1023 bytes into a region of size 101 [-Wformat-overflow=] sprintf(buffer,"trap \"\" 13; uncompress -c '%s' 2> /dev/null\n", ^~ DataFileName); ~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from command.c:118: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 43 and 1066 bytes into a destination of size 128 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ command.c: In function 'ApplyMapShow': command.c:5365:123: warning: ' ' directive writing 1 byte into a region of size between 0 and 40 [-Wformat-overflow=] sprintf(buffer," distance to selected van der Waals surface:\n mean %#g, min %#g, max %#g, esd %#g\n", ^~ In file included from /usr/include/stdio.h:862, from command.c:118: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 95 and 139 bytes into a destination of size 133 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ command.c:5375:123: warning: ' ' directive writing 1 byte into a region of size between 0 and 40 [-Wformat-overflow=] sprintf(buffer," distance to selected Lee-Richards surface:\n mean %#g, min %#g, max %#g, esd %#g\n", ^~ In file included from /usr/include/stdio.h:862, from command.c:118: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 95 and 139 bytes into a destination of size 133 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ command.c: In function 'ExecuteCommandOne': command.c:5906:60: warning: '%g' directive writing between 1 and 13 bytes into a region of size between 6 and 18 [-Wformat-overflow=] sprintf(buffer," Time: %g, Delta Time: %g\n", CommandTime, CommandTime-prevtime); ^~ command.c:5906:36: note: assuming directive output of 12 bytes sprintf(buffer," Time: %g, Delta Time: %g\n", CommandTime, CommandTime-prevtime); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from command.c:118: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 25 and 49 bytes into a destination of size 40 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o transfor.o transfor.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from transfor.c:198: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ transfor.c: In function 'SetVanWaalRadius': transfor.c:559:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if( (ptr->irad)+iProbeRad>MaxAtomRadius ) ^~ transfor.c:561:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' ptr->flag |= ExpandFlag; ^~~ transfor.c:563:13: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if( ptr->irad>MaxAtomRadius ) ^~ transfor.c:565:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' ptr->flag &= ~ExpandFlag; ^~~ transfor.c: In function 'ColourPointAttrib': transfor.c:2282:33: warning: variable 'result' set but not used [-Wunused-but-set-variable] register int i,shade,nshade,result; ^~~~~~ transfor.c: In function 'StructColourAttrib': transfor.c:3064:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if( !Database ) ^~ transfor.c:3066:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' ColourBondNone(); ^~~~~~~~~~~~~~ transfor.c: In function 'ScaleColourMap': transfor.c:1702:17: warning: array subscript 31 is above array bounds of 'ShadeRef[31]' {aka 'struct [31]'} [-Warray-bounds] { ScaleRef[i].r = 0; ~~~~~~~~^~~ transfor.c:1703:17: warning: array subscript 31 is above array bounds of 'ShadeRef[31]' {aka 'struct [31]'} [-Warray-bounds] ScaleRef[i].g = 0; ~~~~~~~~^~~ transfor.c:1704:17: warning: array subscript 31 is above array bounds of 'ShadeRef[31]' {aka 'struct [31]'} [-Warray-bounds] ScaleRef[i].b = 255; ~~~~~~~~^~~ transfor.c:1705:17: warning: array subscript 31 is above array bounds of 'ShadeRef[31]' {aka 'struct [31]'} [-Warray-bounds] ScaleRef[i].shade = 0; ~~~~~~~~^~~ transfor.c:1706:17: warning: array subscript 31 is above array bounds of 'ShadeRef[31]' {aka 'struct [31]'} [-Warray-bounds] ScaleRef[i].col = 0; ~~~~~~~~^~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o render.o render.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from render.c:189: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ render.c: In function 'PickAtoms': render.c:2076:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if( !QAtom ) ^~ render.c:2079:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if( PickMode==PickCentr && shift ) ^~ render.c:2173:15: warning: this 'else' clause does not guard... [-Wmisleading-indentation] } else ^~~~ render.c:2175:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' QAtom->label = label; ^~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o repres.o repres.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from repres.c:234: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ repres.c: In function 'TestSolventDot': repres.c:987:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if( lx < 0 ) lx = 0; if( ux >= VOXORDER ) ux = VOXORDER-1; ^~ repres.c:987:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if( lx < 0 ) lx = 0; if( ux >= VOXORDER ) ux = VOXORDER-1; ^~ repres.c:988:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if( ly < 0 ) ly = 0; if( uy >= VOXORDER ) uy = VOXORDER-1; ^~ repres.c:988:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if( ly < 0 ) ly = 0; if( uy >= VOXORDER ) uy = VOXORDER-1; ^~ repres.c:989:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if( lz < 0 ) lz = 0; if( uz >= VOXORDER ) uz = VOXORDER-1; ^~ repres.c:989:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if( lz < 0 ) lz = 0; if( uz >= VOXORDER ) uz = VOXORDER-1; ^~ repres.c: In function 'CalculateSurface': repres.c:1113:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if( !Database ) ^~ repres.c:1116:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' DotCount = density; ^~~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o pixutils.o pixutils.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from pixutils.c:183: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ pixutils.c: In function 'ClipDashLine': pixutils.c:645:23: warning: variable 'ca' set but not used [-Wunused-but-set-variable] register Pixel c, ca, mid; ^~ pixutils.c: In function 'DrawCircle': pixutils.c:2606:6: warning: variable 'updown' set but not used [-Wunused-but-set-variable] int updown, ifirst; ^~~~~~ pixutils.c: In function 'DrawCylinderCaps': pixutils.c:2986:21: warning: variable 'alts' set but not used [-Wunused-but-set-variable] register int p, alts, altc; ^~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o outfile.o outfile.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from outfile.c:170: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ outfile.c: In function 'WriteVectDots': outfile.c:1998:24: warning: variable 'tump' set but not used [-Wunused-but-set-variable] register int temp, tump; ^~~~ outfile.c:1998:18: warning: variable 'temp' set but not used [-Wunused-but-set-variable] register int temp, tump; ^~~~ outfile.c: In function 'WriteVectMapPoints': outfile.c:2038:24: warning: variable 'tump' set but not used [-Wunused-but-set-variable] register int temp, tump; ^~~~ outfile.c:2038:18: warning: variable 'temp' set but not used [-Wunused-but-set-variable] register int temp, tump; ^~~~ outfile.c: In function 'R3DSphere': outfile.c:2601:24: warning: variable 'z1' set but not used [-Wunused-but-set-variable] register Real x1, y1, z1; /* coordinates after rotation and translation*/ ^~ outfile.c:2601:20: warning: variable 'y1' set but not used [-Wunused-but-set-variable] register Real x1, y1, z1; /* coordinates after rotation and translation*/ ^~ outfile.c:2601:16: warning: variable 'x1' set but not used [-Wunused-but-set-variable] register Real x1, y1, z1; /* coordinates after rotation and translation*/ ^~ outfile.c: In function 'R3DStrandRibbon': outfile.c:2956:28: warning: variable 'qsz' set but not used [-Wunused-but-set-variable] register int qsx, qsy, qsz; ^~~ At top level: outfile.c:2082:13: warning: 'WriteVectMapBonds' defined but not used [-Wunused-function] static void WriteVectMapBonds( void) { ^~~~~~~~~~~~~~~~~ outfile.c: In function 'WriteR3DFile': outfile.c:2871:26: warning: '%s' directive writing up to 79 bytes into a region of size 22 [-Wformat-overflow=] sprintf((char *)name,"%s",buffer); ^~ ~~~~~~ In file included from /usr/include/stdio.h:862, from outfile.c:191: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 1 and 80 bytes into a destination of size 22 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o script.o script.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from script.c:164: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ script.c:2342:13: warning: 'WriteVRMLLine' defined but not used [-Wunused-function] static void WriteVRMLLine( int src, int dst, int shade, int *flag ) ^~~~~~~~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o infile.o infile.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from infile.c:196: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ infile.c: In function 'ApplyBondInfo': infile.c:671:14: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(aptr2=group2->alist; aptr2; aptr2=aptr2->anext) ^~~ infile.c:696:16: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' if (AtomNum1) break; ^~ infile.c: In function 'LoadXYZMolecule': infile.c:1365:13: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if( !FetchRecord(DataFile,Record) ) ^~ infile.c:1367:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' xpos = ypos = zpos = 0.0; ^~~~ infile.c: In function 'LoadCIFMolecule': infile.c:2210:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!cif_datablock_name (cif, &dbname)) ^~ infile.c:2212:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' Info.moleculename[55] = '\0'; ^~~~ infile.c:3232:13: warning: variable 'oNMRModel' set but not used [-Wunused-but-set-variable] int oNMRModel; ^~~~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o tokens.o tokens.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/string.h:26, from tokens.c:194: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cif_fract.o cif_fract.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from cif_fract.c:197: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cif.o cif.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from cif.c:278: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cif_ctonum.o cif_ctonum.c cif_ctonum.c:198: warning: "_USE_RASMOL_H_" redefined #define _USE_RASMOL_H_ : note: this is the location of the previous definition In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from cif_ctonum.c:200: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cif_stx.o cif_stx.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from cif_stx.c:227: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o multiple.o multiple.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from multiple.c:225: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o vector.o vector.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from vector.c:159: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o wbrotate.o wbrotate.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from wbrotate.c:201: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o langsel_unix.o langsel_unix.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from langsel_unix.c:114: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ langsel_unix.c: In function 'SwitchLang': langsel_unix.c:2347:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (Interactive) ^~ langsel_unix.c:2349:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (Language != lang) { ^~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o maps.o maps.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from maps.c:81: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ maps.c: In function 'SaveMapFile': maps.c:429:55: warning: variable 'fcmapmask_zbase' set but not used [-Wunused-but-set-variable] double fcmapmask_xbase=0., fcmapmask_ybase=0, fcmapmask_zbase=0.; ^~~~~~~~~~~~~~~ maps.c:429:36: warning: variable 'fcmapmask_ybase' set but not used [-Wunused-but-set-variable] double fcmapmask_xbase=0., fcmapmask_ybase=0, fcmapmask_zbase=0.; ^~~~~~~~~~~~~~~ maps.c:429:16: warning: variable 'fcmapmask_xbase' set but not used [-Wunused-but-set-variable] double fcmapmask_xbase=0., fcmapmask_ybase=0, fcmapmask_zbase=0.; ^~~~~~~~~~~~~~~ maps.c:428:48: warning: variable 'fcmap_zbase' set but not used [-Wunused-but-set-variable] double fcmap_xbase=0., fcmap_ybase=0., fcmap_zbase=0.; ^~~~~~~~~~~ maps.c:428:32: warning: variable 'fcmap_ybase' set but not used [-Wunused-but-set-variable] double fcmap_xbase=0., fcmap_ybase=0., fcmap_zbase=0.; ^~~~~~~~~~~ maps.c:428:16: warning: variable 'fcmap_xbase' set but not used [-Wunused-but-set-variable] double fcmap_xbase=0., fcmap_ybase=0., fcmap_zbase=0.; ^~~~~~~~~~~ maps.c: In function 'LoadCBFMapFile': maps.c:1758:12: warning: variable 'fcmapmask_xbase' set but not used [-Wunused-but-set-variable] double fcmapmask_xbase, fcmapmask_ybase, fcmapmask_zbase; ^~~~~~~~~~~~~~~ maps.c:1757:12: warning: variable 'fcmap_xbase' set but not used [-Wunused-but-set-variable] double fcmap_xbase, fcmap_ybase, fcmap_zbase; ^~~~~~~~~~~ maps.c:1756:12: warning: variable 'ocmapmask_xbase' set but not used [-Wunused-but-set-variable] double ocmapmask_xbase, ocmapmask_ybase, ocmapmask_zbase; ^~~~~~~~~~~~~~~ maps.c:1755:12: warning: variable 'ocmap_xbase' set but not used [-Wunused-but-set-variable] double ocmap_xbase, ocmap_ybase, ocmap_zbase; ^~~~~~~~~~~ maps.c:1754:12: warning: variable 'mapmask_xbase' set but not used [-Wunused-but-set-variable] Long mapmask_xbase, mapmask_ybase, mapmask_zbase; ^~~~~~~~~~~~~ maps.c:1753:12: warning: variable 'map_xbase' set but not used [-Wunused-but-set-variable] Long map_xbase, map_ybase, map_zbase; ^~~~~~~~~ maps.c: In function 'LoadCCP4MapFile': maps.c:2988:9: warning: variable 'rawelsize' set but not used [-Wunused-but-set-variable] int rawelsize; ^~~~~~~~~ In file included from maps.c:96: maps.c: In function 'map_points': maps.c:4575:42: warning: the address of 'gradient' will always evaluate as 'true' [-Waddress] MapPointm2o(map,mp,gradient); ^~~~~~~~ maps.h:187:10: note: in definition of macro 'MapPointm2o' if (gradient) { \ ^~~~~~~~ maps.c:4598:44: warning: the address of 'gradient' will always evaluate as 'true' [-Waddress] MapPointm2o(map,mp,gradient); ^~~~~~~~ maps.h:187:10: note: in definition of macro 'MapPointm2o' if (gradient) { \ ^~~~~~~~ maps.c:4399:12: warning: variable 'koffsets' set but not used [-Wunused-but-set-variable] Long koffsets[3][2]; /* The offsets back to the prior cells */ ^~~~~~~~ maps.c:4398:11: warning: variable 'odirs' set but not used [-Wunused-but-set-variable] int odirs[3][2]; /* {Y,Z}, {Z,X}, {X,Y} */ ^~~~~ maps.c:4396:39: warning: variable 'havebody' set but not used [-Wunused-but-set-variable] int haveedges[3], havefaces[3], havebody; ^~~~~~~~ maps.c: In function 'SaveMapFile': maps.c:394:51: warning: 'mapinfo' may be used uninitialized in this function [-Wmaybe-uninitialized] cbf_failnez (cbf_set_value(cbf,mapinfo->MapFile)) ^~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DSIXTEENBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o x11win.o x11win.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdlib.h:25, from x11win.c:232: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ x11win.c: In function 'RasLoadQueryFontSet.constprop': x11win.c:758:59: warning: '%s' directive writing up to 254 bytes into a region of size 222 [-Wformat-overflow=] sprintf(buffer, "Missing charsets in MenuFontSet (%s) creation.\n", fontset_name); ^~ In file included from /usr/include/stdio.h:862, from x11win.c:235: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 46 and 300 bytes into a destination of size 255 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rm -f rasmol gcc -m32 -o rasmol -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -L/usr/lib -L/usr/lib rasmol.o molecule.o abstree.o cmndline.o command.o transfor.o render.o repres.o pixutils.o outfile.o script.o infile.o tokens.o cif_fract.o cif.o cif_ctonum.o cif_stx.o multiple.o vector.o wbrotate.o langsel_unix.o maps.o x11win.o -lm -lXi -lXext -lX11 -lcbf -lCQRlib -lCVector -lCNearTree -lgfortran make: Leaving directory '/usr/src/RPM/BUILD/RasMol-2.7.5.2/src' + mv rasmol rasmol-16bpp + make clean rasmol DEPTHDEF=-DTHIRTYTWOBIT make: Entering directory '/usr/src/RPM/BUILD/RasMol-2.7.5.2/src' rm -f rasmol._man rm -f rasmol rm -f gtkui.h rasmol.man rm -f *.CKP *.ln *.BAK *.bak *.o core errs ,* *~ *.a .emacs_* tags TAGS make.log MakeOut "#"* gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o rasmol.o rasmol.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdlib.h:25, from rasmol.c:203: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ rasmol.c:1170:15: warning: 'DetermineRasMolPath' defined but not used [-Wunused-function] static size_t DetermineRasMolPath( char * rpath, size_t maxlen) { ^~~~~~~~~~~~~~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o molecule.o molecule.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from molecule.c:220: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ molecule.c: In function 'CreateSurfaceBonds': molecule.c:2152:27: warning: variable 'dz' set but not used [-Wunused-but-set-variable] register Long dx, dy, dz; ^~ molecule.c:2152:23: warning: variable 'dy' set but not used [-Wunused-but-set-variable] register Long dx, dy, dz; ^~ molecule.c:2152:19: warning: variable 'dx' set but not used [-Wunused-but-set-variable] register Long dx, dy, dz; ^~ At top level: molecule.c:1722:13: warning: 'TestSurface' defined but not used [-Wunused-function] static void TestSurface( RAtom __far *sptr, RAtom __far *dptr ) ^~~~~~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o abstree.o abstree.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from abstree.c:81: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cmndline.o cmndline.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from cmndline.c:82: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ cmndline.c: In function 'ProcessMouseMove': cmndline.c:929:7: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for (index=0; index<10; index++) ^~~ cmndline.c:931:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' SaveQuat.w = DialQRot.w; ^~~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o command.o command.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from command.c:91: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ command.c: In function 'Find_Symbol_Definition': command.c:1072:18: warning: variable 'prevsymbol' set but not used [-Wunused-but-set-variable] Symbol __far * prevsymbol; ^~~~~~~~~~ command.c: In function 'PlayMovieFrame': command.c:1493:8: warning: variable 'checkfile' set but not used [-Wunused-but-set-variable] int checkfile; ^~~~~~~~~ command.c: In function 'ParseExpression': command.c:2215:40: warning: this 'if' clause does not guard... [-Wmisleading-indentation] case(SheetTok): if( Info.laddercount < 0 ) ^~ command.c:2217:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' pred = PredSheet; ^~~~ command.c:2219:40: warning: this 'if' clause does not guard... [-Wmisleading-indentation] case(TurnTok): if( Info.turncount < 0 ) ^~ command.c:2221:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' pred = PredTurn; ^~~~ command.c:2223:40: warning: this 'if' clause does not guard... [-Wmisleading-indentation] case(CystineTok): if( Info.ssbondcount < 0 ) ^~ command.c:2225:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' pred = PredCystine; ^~~~ command.c:2227:40: warning: this 'if' clause does not guard... [-Wmisleading-indentation] case(CisBondedTok):if( Info.cisbondcount<0 ) ^~ command.c:2229:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' pred = PredCisBond; ^~~~ command.c:2328:31: warning: this 'if' clause does not guard... [-Wmisleading-indentation] case('-'): if( NextIf(NumberTok,ErrNotNum) ) ^~ command.c:2330:21: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' return( ParseRange(True) ); ^~~~~~ command.c: In function 'ReadAtomSelection': command.c:4261:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for( QAtom=QGroup->alist; QAtom; QAtom=QAtom->anext ) ^~~ command.c:4263:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' SelectCount = 0; ^~~~~~~~~~~ command.c:4279:4: warning: value computed is not used [-Wunused-value] *TokenPtr--; ^~~~~~~~~~~ command.c:4296:6: warning: value computed is not used [-Wunused-value] *TokenPtr--; ^~~~~~~~~~~ command.c:4337:13: warning: value computed is not used [-Wunused-value] *TokenPtr++; ^~~~~~~~~~~ command.c: In function 'ApplyMapAtomSelection': command.c:4752:12: warning: unused variable 'visits' [-Wunused-variable] size_t visits; ^~~~~~ command.c: In function 'ExecuteCommandOne': command.c:7488:27: warning: this 'for' clause does not guard... [-Wmisleading-indentation] case(ResetTok): for( i=0; i<10; i++ ) ^~~ command.c:7490:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' ReDrawFlag |= RFDials; ^~~~~~~~~~ command.c:7501:27: warning: this 'if' clause does not guard... [-Wmisleading-indentation] case(HelpTok): if( !HelpFileName ) ^~ command.c:7503:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if( HelpInfo ) ^~ command.c: In function 'ExecuteIPCCommand': command.c:7964:16: warning: this 'if' clause does not guard... [-Wmisleading-indentation] } else if( *ptr=='[' ) ^~ command.c:7967:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if( len < MAXBUFFLEN-1 ) ^~ At top level: command.c:902:12: warning: 'Define_Symbol' defined but not used [-Wunused-function] static int Define_Symbol(const char __far * string, const char __far * definition) { ^~~~~~~~~~~~~ command.c: In function 'FetchFile': command.c:678:54: warning: '%s' directive writing up to 1023 bytes into a region of size 105 [-Wformat-overflow=] sprintf(buffer,"trap \"\" 13; gzip -cdq '%s' 2> /dev/null\n", ^~ DataFileName); ~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from command.c:118: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 39 and 1062 bytes into a destination of size 128 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ command.c:674:58: warning: '%s' directive writing up to 1023 bytes into a region of size 101 [-Wformat-overflow=] sprintf(buffer,"trap \"\" 13; uncompress -c '%s' 2> /dev/null\n", ^~ DataFileName); ~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from command.c:118: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 43 and 1066 bytes into a destination of size 128 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ command.c: In function 'ApplyMapShow': command.c:5365:123: warning: ' ' directive writing 1 byte into a region of size between 0 and 40 [-Wformat-overflow=] sprintf(buffer," distance to selected van der Waals surface:\n mean %#g, min %#g, max %#g, esd %#g\n", ^~ In file included from /usr/include/stdio.h:862, from command.c:118: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 95 and 139 bytes into a destination of size 133 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ command.c:5375:123: warning: ' ' directive writing 1 byte into a region of size between 0 and 40 [-Wformat-overflow=] sprintf(buffer," distance to selected Lee-Richards surface:\n mean %#g, min %#g, max %#g, esd %#g\n", ^~ In file included from /usr/include/stdio.h:862, from command.c:118: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 95 and 139 bytes into a destination of size 133 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ command.c: In function 'ExecuteCommandOne': command.c:5906:60: warning: '%g' directive writing between 1 and 13 bytes into a region of size between 6 and 18 [-Wformat-overflow=] sprintf(buffer," Time: %g, Delta Time: %g\n", CommandTime, CommandTime-prevtime); ^~ command.c:5906:36: note: assuming directive output of 12 bytes sprintf(buffer," Time: %g, Delta Time: %g\n", CommandTime, CommandTime-prevtime); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from command.c:118: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 25 and 49 bytes into a destination of size 40 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o transfor.o transfor.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from transfor.c:198: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ transfor.c: In function 'SetVanWaalRadius': transfor.c:559:15: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if( (ptr->irad)+iProbeRad>MaxAtomRadius ) ^~ transfor.c:561:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' ptr->flag |= ExpandFlag; ^~~ transfor.c:563:13: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if( ptr->irad>MaxAtomRadius ) ^~ transfor.c:565:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' ptr->flag &= ~ExpandFlag; ^~~ transfor.c: In function 'ColourPointAttrib': transfor.c:2282:33: warning: variable 'result' set but not used [-Wunused-but-set-variable] register int i,shade,nshade,result; ^~~~~~ transfor.c: In function 'StructColourAttrib': transfor.c:3064:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if( !Database ) ^~ transfor.c:3066:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' ColourBondNone(); ^~~~~~~~~~~~~~ transfor.c: In function 'ScaleColourMap': transfor.c:1702:17: warning: array subscript 31 is above array bounds of 'ShadeRef[31]' {aka 'struct [31]'} [-Warray-bounds] { ScaleRef[i].r = 0; ~~~~~~~~^~~ transfor.c:1703:17: warning: array subscript 31 is above array bounds of 'ShadeRef[31]' {aka 'struct [31]'} [-Warray-bounds] ScaleRef[i].g = 0; ~~~~~~~~^~~ transfor.c:1704:17: warning: array subscript 31 is above array bounds of 'ShadeRef[31]' {aka 'struct [31]'} [-Warray-bounds] ScaleRef[i].b = 255; ~~~~~~~~^~~ transfor.c:1705:17: warning: array subscript 31 is above array bounds of 'ShadeRef[31]' {aka 'struct [31]'} [-Warray-bounds] ScaleRef[i].shade = 0; ~~~~~~~~^~~ transfor.c:1706:17: warning: array subscript 31 is above array bounds of 'ShadeRef[31]' {aka 'struct [31]'} [-Warray-bounds] ScaleRef[i].col = 0; ~~~~~~~~^~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o render.o render.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from render.c:189: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ render.c: In function 'PickAtoms': render.c:2076:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if( !QAtom ) ^~ render.c:2079:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if( PickMode==PickCentr && shift ) ^~ render.c:2173:15: warning: this 'else' clause does not guard... [-Wmisleading-indentation] } else ^~~~ render.c:2175:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' QAtom->label = label; ^~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o repres.o repres.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from repres.c:234: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ repres.c: In function 'TestSolventDot': repres.c:987:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if( lx < 0 ) lx = 0; if( ux >= VOXORDER ) ux = VOXORDER-1; ^~ repres.c:987:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if( lx < 0 ) lx = 0; if( ux >= VOXORDER ) ux = VOXORDER-1; ^~ repres.c:988:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if( ly < 0 ) ly = 0; if( uy >= VOXORDER ) uy = VOXORDER-1; ^~ repres.c:988:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if( ly < 0 ) ly = 0; if( uy >= VOXORDER ) uy = VOXORDER-1; ^~ repres.c:989:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if( lz < 0 ) lz = 0; if( uz >= VOXORDER ) uz = VOXORDER-1; ^~ repres.c:989:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if( lz < 0 ) lz = 0; if( uz >= VOXORDER ) uz = VOXORDER-1; ^~ repres.c: In function 'CalculateSurface': repres.c:1113:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if( !Database ) ^~ repres.c:1116:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' DotCount = density; ^~~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o pixutils.o pixutils.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from pixutils.c:183: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ pixutils.c: In function 'ClipDashLine': pixutils.c:645:23: warning: variable 'ca' set but not used [-Wunused-but-set-variable] register Pixel c, ca, mid; ^~ pixutils.c: In function 'DrawCircle': pixutils.c:2606:6: warning: variable 'updown' set but not used [-Wunused-but-set-variable] int updown, ifirst; ^~~~~~ pixutils.c: In function 'DrawCylinderCaps': pixutils.c:2986:21: warning: variable 'alts' set but not used [-Wunused-but-set-variable] register int p, alts, altc; ^~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o outfile.o outfile.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from outfile.c:170: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ outfile.c: In function 'WriteVectDots': outfile.c:1998:24: warning: variable 'tump' set but not used [-Wunused-but-set-variable] register int temp, tump; ^~~~ outfile.c:1998:18: warning: variable 'temp' set but not used [-Wunused-but-set-variable] register int temp, tump; ^~~~ outfile.c: In function 'WriteVectMapPoints': outfile.c:2038:24: warning: variable 'tump' set but not used [-Wunused-but-set-variable] register int temp, tump; ^~~~ outfile.c:2038:18: warning: variable 'temp' set but not used [-Wunused-but-set-variable] register int temp, tump; ^~~~ outfile.c: In function 'R3DSphere': outfile.c:2601:24: warning: variable 'z1' set but not used [-Wunused-but-set-variable] register Real x1, y1, z1; /* coordinates after rotation and translation*/ ^~ outfile.c:2601:20: warning: variable 'y1' set but not used [-Wunused-but-set-variable] register Real x1, y1, z1; /* coordinates after rotation and translation*/ ^~ outfile.c:2601:16: warning: variable 'x1' set but not used [-Wunused-but-set-variable] register Real x1, y1, z1; /* coordinates after rotation and translation*/ ^~ outfile.c: In function 'R3DStrandRibbon': outfile.c:2956:28: warning: variable 'qsz' set but not used [-Wunused-but-set-variable] register int qsx, qsy, qsz; ^~~ At top level: outfile.c:2082:13: warning: 'WriteVectMapBonds' defined but not used [-Wunused-function] static void WriteVectMapBonds( void) { ^~~~~~~~~~~~~~~~~ outfile.c: In function 'WriteR3DFile': outfile.c:2871:26: warning: '%s' directive writing up to 79 bytes into a region of size 22 [-Wformat-overflow=] sprintf((char *)name,"%s",buffer); ^~ ~~~~~~ In file included from /usr/include/stdio.h:862, from outfile.c:191: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 1 and 80 bytes into a destination of size 22 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o script.o script.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from script.c:164: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ script.c:2342:13: warning: 'WriteVRMLLine' defined but not used [-Wunused-function] static void WriteVRMLLine( int src, int dst, int shade, int *flag ) ^~~~~~~~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o infile.o infile.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from infile.c:196: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ infile.c: In function 'ApplyBondInfo': infile.c:671:14: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(aptr2=group2->alist; aptr2; aptr2=aptr2->anext) ^~~ infile.c:696:16: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' if (AtomNum1) break; ^~ infile.c: In function 'LoadXYZMolecule': infile.c:1365:13: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if( !FetchRecord(DataFile,Record) ) ^~ infile.c:1367:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' xpos = ypos = zpos = 0.0; ^~~~ infile.c: In function 'LoadCIFMolecule': infile.c:2210:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!cif_datablock_name (cif, &dbname)) ^~ infile.c:2212:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' Info.moleculename[55] = '\0'; ^~~~ infile.c:3232:13: warning: variable 'oNMRModel' set but not used [-Wunused-but-set-variable] int oNMRModel; ^~~~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o tokens.o tokens.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/string.h:26, from tokens.c:194: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cif_fract.o cif_fract.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from cif_fract.c:197: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cif.o cif.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from cif.c:278: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cif_ctonum.o cif_ctonum.c cif_ctonum.c:198: warning: "_USE_RASMOL_H_" redefined #define _USE_RASMOL_H_ : note: this is the location of the previous definition In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from cif_ctonum.c:200: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o cif_stx.o cif_stx.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from cif_stx.c:227: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o multiple.o multiple.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from multiple.c:225: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o vector.o vector.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from vector.c:159: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o wbrotate.o wbrotate.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:163, from wbrotate.c:201: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o langsel_unix.o langsel_unix.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from langsel_unix.c:114: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ langsel_unix.c: In function 'SwitchLang': langsel_unix.c:2347:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (Interactive) ^~ langsel_unix.c:2349:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (Language != lang) { ^~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o maps.o maps.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from maps.c:81: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ maps.c: In function 'SaveMapFile': maps.c:429:55: warning: variable 'fcmapmask_zbase' set but not used [-Wunused-but-set-variable] double fcmapmask_xbase=0., fcmapmask_ybase=0, fcmapmask_zbase=0.; ^~~~~~~~~~~~~~~ maps.c:429:36: warning: variable 'fcmapmask_ybase' set but not used [-Wunused-but-set-variable] double fcmapmask_xbase=0., fcmapmask_ybase=0, fcmapmask_zbase=0.; ^~~~~~~~~~~~~~~ maps.c:429:16: warning: variable 'fcmapmask_xbase' set but not used [-Wunused-but-set-variable] double fcmapmask_xbase=0., fcmapmask_ybase=0, fcmapmask_zbase=0.; ^~~~~~~~~~~~~~~ maps.c:428:48: warning: variable 'fcmap_zbase' set but not used [-Wunused-but-set-variable] double fcmap_xbase=0., fcmap_ybase=0., fcmap_zbase=0.; ^~~~~~~~~~~ maps.c:428:32: warning: variable 'fcmap_ybase' set but not used [-Wunused-but-set-variable] double fcmap_xbase=0., fcmap_ybase=0., fcmap_zbase=0.; ^~~~~~~~~~~ maps.c:428:16: warning: variable 'fcmap_xbase' set but not used [-Wunused-but-set-variable] double fcmap_xbase=0., fcmap_ybase=0., fcmap_zbase=0.; ^~~~~~~~~~~ maps.c: In function 'LoadCBFMapFile': maps.c:1758:12: warning: variable 'fcmapmask_xbase' set but not used [-Wunused-but-set-variable] double fcmapmask_xbase, fcmapmask_ybase, fcmapmask_zbase; ^~~~~~~~~~~~~~~ maps.c:1757:12: warning: variable 'fcmap_xbase' set but not used [-Wunused-but-set-variable] double fcmap_xbase, fcmap_ybase, fcmap_zbase; ^~~~~~~~~~~ maps.c:1756:12: warning: variable 'ocmapmask_xbase' set but not used [-Wunused-but-set-variable] double ocmapmask_xbase, ocmapmask_ybase, ocmapmask_zbase; ^~~~~~~~~~~~~~~ maps.c:1755:12: warning: variable 'ocmap_xbase' set but not used [-Wunused-but-set-variable] double ocmap_xbase, ocmap_ybase, ocmap_zbase; ^~~~~~~~~~~ maps.c:1754:12: warning: variable 'mapmask_xbase' set but not used [-Wunused-but-set-variable] Long mapmask_xbase, mapmask_ybase, mapmask_zbase; ^~~~~~~~~~~~~ maps.c:1753:12: warning: variable 'map_xbase' set but not used [-Wunused-but-set-variable] Long map_xbase, map_ybase, map_zbase; ^~~~~~~~~ maps.c: In function 'LoadCCP4MapFile': maps.c:2988:9: warning: variable 'rawelsize' set but not used [-Wunused-but-set-variable] int rawelsize; ^~~~~~~~~ In file included from maps.c:96: maps.c: In function 'map_points': maps.c:4575:42: warning: the address of 'gradient' will always evaluate as 'true' [-Waddress] MapPointm2o(map,mp,gradient); ^~~~~~~~ maps.h:187:10: note: in definition of macro 'MapPointm2o' if (gradient) { \ ^~~~~~~~ maps.c:4598:44: warning: the address of 'gradient' will always evaluate as 'true' [-Waddress] MapPointm2o(map,mp,gradient); ^~~~~~~~ maps.h:187:10: note: in definition of macro 'MapPointm2o' if (gradient) { \ ^~~~~~~~ maps.c:4399:12: warning: variable 'koffsets' set but not used [-Wunused-but-set-variable] Long koffsets[3][2]; /* The offsets back to the prior cells */ ^~~~~~~~ maps.c:4398:11: warning: variable 'odirs' set but not used [-Wunused-but-set-variable] int odirs[3][2]; /* {Y,Z}, {Z,X}, {X,Y} */ ^~~~~ maps.c:4396:39: warning: variable 'havebody' set but not used [-Wunused-but-set-variable] int haveedges[3], havefaces[3], havebody; ^~~~~~~~ maps.c: In function 'SaveMapFile': maps.c:394:51: warning: 'mapinfo' may be used uninitialized in this function [-Wmaybe-uninitialized] cbf_failnez (cbf_set_value(cbf,mapinfo->MapFile)) ^~ gcc -m32 -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -I/usr/include -I/usr/include -Dlinux -D__i386__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/lib/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I@GENTOO_PORTAGE_EPREFIX@/usr/include -I@GENTOO_PORTAGE_EPREFIX@/usr/include/cbflib -c -o x11win.o x11win.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdlib.h:25, from x11win.c:232: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ x11win.c: In function 'RasLoadQueryFontSet.constprop': x11win.c:758:59: warning: '%s' directive writing up to 254 bytes into a region of size 222 [-Wformat-overflow=] sprintf(buffer, "Missing charsets in MenuFontSet (%s) creation.\n", fontset_name); ^~ In file included from /usr/include/stdio.h:862, from x11win.c:235: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 46 and 300 bytes into a destination of size 255 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rm -f rasmol gcc -m32 -o rasmol -pipe -Wall -g -O2 -march=i586 -mtune=generic -fno-strength-reduce -fno-strict-aliasing -pipe -L/usr/lib -L/usr/lib rasmol.o molecule.o abstree.o cmndline.o command.o transfor.o render.o repres.o pixutils.o outfile.o script.o infile.o tokens.o cif_fract.o cif.o cif_ctonum.o cif_stx.o multiple.o vector.o wbrotate.o langsel_unix.o maps.o x11win.o -lm -lXi -lXext -lX11 -lcbf -lCQRlib -lCVector -lCNearTree -lgfortran make: Leaving directory '/usr/src/RPM/BUILD/RasMol-2.7.5.2/src' + mv rasmol rasmol-32bpp + popd ~/RPM/BUILD/RasMol-2.7.5.2 + exit 0 Executing(%install): /bin/sh -e /usr/src/tmp/rpm-tmp.76885 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + /bin/chmod -Rf u+rwX -- /usr/src/tmp/RasMol-buildroot + : + /bin/rm -rf -- /usr/src/tmp/RasMol-buildroot + cd RasMol-2.7.5.2 + find -type f -name .DS_Store -execdir rm '{}' + + install -pDm755 /usr/src/RPM/SOURCES/rasmol.sh /usr/src/tmp/RasMol-buildroot/usr/bin/rasmol + install -pm755 src/rasmol-8bpp /usr/src/tmp/RasMol-buildroot/usr/bin/rasmol-8bpp + install -pm755 src/rasmol-16bpp /usr/src/tmp/RasMol-buildroot/usr/bin/rasmol-16bpp + install -pm755 src/rasmol-32bpp /usr/src/tmp/RasMol-buildroot/usr/bin/rasmol-32bpp + mkdir -p /usr/src/tmp/RasMol-buildroot/usr/share/RasMol /usr/src/tmp/RasMol-buildroot/usr/share/man/man1/ + install -pm644 doc/rasmol.1.gz /usr/src/tmp/RasMol-buildroot/usr/share/man/man1/rasmol.1.gz + install -pm644 doc/rasmol.hlp /usr/src/tmp/RasMol-buildroot/usr/share/RasMol/rasmol.hlp + install -pm644 doc/rasmol.html /usr/src/tmp/RasMol-buildroot/usr/share/RasMol/rasmol.html + pushd doc ~/RPM/BUILD/RasMol-2.7.5.2/doc ~/RPM/BUILD/RasMol-2.7.5.2 + rm rasmol.hlp rasmol.html rasmol.1.gz + mkdir doc + install -pm644 INSTALL.html NOTICE.html README.html esrasmol27.html esrasmol2721.html index.html manualA4.pdf.gz manualUS.pdf.gz refcardA4.pdf.gz refcardUS.pdf.gz manualA4.ps.gz manualUS.ps.gz refcardA4.ps.gz refcardUS.ps.gz manualA4.rtf.gz manualUS.rtf.gz raswin.rtf.gz refcardA4.rtf.gz refcardUS.rtf.gz rasmol.doc.gz doc/ + mkdir examples + popd ~/RPM/BUILD/RasMol-2.7.5.2 + mv data/1crn.pdb data/1gpd.pdb.gz data/1ldb.pdb.gz data/1ldm.pdb.gz data/3cro.pdb data/4hir.ent.gz data/4ins.CIF data/7lyz.pdb data/IUCR9800028.cif data/RSML_fixup.csh data/asprin.alc data/pdb2mcg.ent doc/examples/ + install -pDm644 /usr/src/RPM/SOURCES/rasmol.xpm /usr/src/tmp/RasMol-buildroot/usr/share/icons/hicolor/32x32/apps/rasmol.xpm + install -pDm644 /usr/src/RPM/SOURCES/rasmol_16x14.png /usr/src/tmp/RasMol-buildroot/usr/share/icons/hicolor/16x16/apps/rasmol.png + install -pDm644 /usr/src/RPM/SOURCES/rasmol_32x29.png /usr/src/tmp/RasMol-buildroot/usr/share/icons/hicolor/32x32/apps/rasmol.png + install -pDm644 /usr/src/RPM/SOURCES/rasmol_64x58.png /usr/src/tmp/RasMol-buildroot/usr/share/icons/hicolor/64x64/apps/rasmol.png + install -pDm644 /usr/src/RPM/SOURCES/rasmol.desktop /usr/src/tmp/RasMol-buildroot/usr/share/applications/RasMol.desktop + /usr/lib/rpm/brp-alt Cleaning files in /usr/src/tmp/RasMol-buildroot (auto) Verifying and fixing files in /usr/src/tmp/RasMol-buildroot (binconfig,pkgconfig,libtool,desktop) Checking contents of files in /usr/src/tmp/RasMol-buildroot/ (default) Compressing files in /usr/src/tmp/RasMol-buildroot (auto) Verifying ELF objects in /usr/src/tmp/RasMol-buildroot (arch=normal,fhs=normal,lfs=relaxed,lint=relaxed,rpath=normal,stack=normal,textrel=normal,unresolved=normal) Hardlinking identical .pyc and .pyo files Processing files: RasMol-2.7.5.2-alt4 Executing(%doc): /bin/sh -e /usr/src/tmp/rpm-tmp.21033 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd RasMol-2.7.5.2 + DOCDIR=/usr/src/tmp/RasMol-buildroot/usr/share/doc/RasMol-2.7.5.2 + export DOCDIR + rm -rf /usr/src/tmp/RasMol-buildroot/usr/share/doc/RasMol-2.7.5.2 + /bin/mkdir -p /usr/src/tmp/RasMol-buildroot/usr/share/doc/RasMol-2.7.5.2 + cp -prL doc/ /usr/src/tmp/RasMol-buildroot/usr/share/doc/RasMol-2.7.5.2 + chmod -R go-w /usr/src/tmp/RasMol-buildroot/usr/share/doc/RasMol-2.7.5.2 + chmod -R a+rX /usr/src/tmp/RasMol-buildroot/usr/share/doc/RasMol-2.7.5.2 + cp -prL NOTICE PROJECTS RASLIC README.html README.shtml README.txt INSTALL INSTALL.html TODO.html TODO.txt ChangeLog ChangeLog.html ChangeLog.txt history.html /usr/src/tmp/RasMol-buildroot/usr/share/doc/RasMol-2.7.5.2 + chmod -R go-w /usr/src/tmp/RasMol-buildroot/usr/share/doc/RasMol-2.7.5.2 + chmod -R a+rX /usr/src/tmp/RasMol-buildroot/usr/share/doc/RasMol-2.7.5.2 + exit 0 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.C4xhki find-provides: running scripts (debuginfo,lib,pam,perl,pkgconfig,python,shell) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.aNfvqM find-requires: running scripts (cpp,debuginfo,files,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks,systemd-services) Provides: rasmol = 2.7.5.2-alt4 Requires: fonts-bitmap-75dpi, xdpyinfo, /bin/sh, /lib/ld-linux.so.2, libCNearTree.so.7 >= set:jfy8eX61ZJ5rZ4xDtOoY3Ofm, libCQRlib.so.2 >= set:jhBWnjL0, libCVector-1.0.3.so.2 >= set:hfsOoCd, libX11.so.6 >= set:ohc6fbkxsesVSZD9TAWJZxFUMYKZF7XZFHoAwZoYIZ2TYjO5aoG8X4Ct9JQyRnIXmV2F0aHbK2ZEIMkiMh7yzkXHE6SFl6Ha4Znpd3lnVtPcXGZBdges21HaRZJR0gURRPSLYLM70RcAA80Vgr3LUciiZbdtHCjMHh3JmZsZmA0wfU8Z8CaFM9ckOPvlJQeQ8HE5AmdIcwyk5PhmNA2U1e, libXext.so.6 >= set:li6tHmY7qME5J7, libc.so.6(GLIBC_2.0), libc.so.6(GLIBC_2.1), libc.so.6(GLIBC_2.15), libc.so.6(GLIBC_2.2), libc.so.6(GLIBC_2.3), libc.so.6(GLIBC_2.3.4), libc.so.6(GLIBC_2.4), libc.so.6(GLIBC_2.7), libcbf.so.0 >= set:nhij0GYBa6O0x4WIjboz5OU4ATPkFBqBcbzYg8P0ecxUzu3yNivD0dJUmrTQFZ7ZKL0g0Njm3mBpemz9qh1jta3BdIxPLMksDf0UwsKp15JkFisAQRQfEn, libm.so.6(GLIBC_2.0), libm.so.6(GLIBC_2.1), rtld(GNU_HASH) Requires(rpmlib): rpmlib(SetVersions) Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.CEEkiS Creating RasMol-debuginfo package Processing files: RasMol-debuginfo-2.7.5.2-alt4 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.mAcu9n find-provides: running scripts (debuginfo) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.bgneTq find-requires: running scripts (debuginfo) Requires: RasMol = 2.7.5.2-alt4, /usr/lib/debug/lib/ld-linux.so.2.debug, debug(libCNearTree.so.7), debug(libCQRlib.so.2), debug(libCVector-1.0.3.so.2), debug(libX11.so.6), debug(libXext.so.6), debug(libc.so.6), debug(libcbf.so.0), debug(libm.so.6) Adding to RasMol-debuginfo a strict dependency on RasMol Wrote: /usr/src/RPM/RPMS/i586/RasMol-2.7.5.2-alt4.i586.rpm Wrote: /usr/src/RPM/RPMS/i586/RasMol-debuginfo-2.7.5.2-alt4.i586.rpm 73.69user 2.52system 2:06.84elapsed 60%CPU (0avgtext+0avgdata 82536maxresident)k 0inputs+0outputs (0major+1225624minor)pagefaults 0swaps 80.03user 5.06system 2:23.11elapsed 59%CPU (0avgtext+0avgdata 118760maxresident)k 2432inputs+0outputs (0major+1532383minor)pagefaults 0swaps