<86>May 17 13:05:22 userdel[1092252]: delete user 'rooter' <86>May 17 13:05:22 userdel[1092252]: removed group 'rooter' owned by 'rooter' <86>May 17 13:05:22 groupadd[1092277]: group added to /etc/group: name=rooter, GID=627 <86>May 17 13:05:22 groupadd[1092277]: group added to /etc/gshadow: name=rooter <86>May 17 13:05:22 groupadd[1092277]: new group: name=rooter, GID=627 <86>May 17 13:05:22 useradd[1092300]: new user: name=rooter, UID=627, GID=627, home=/root, shell=/bin/bash <86>May 17 13:05:22 userdel[1092323]: delete user 'builder' <86>May 17 13:05:22 userdel[1092323]: removed shadow group 'builder' owned by 'builder' <86>May 17 13:05:22 groupadd[1092340]: group added to /etc/group: name=builder, GID=628 <86>May 17 13:05:22 groupadd[1092340]: group added to /etc/gshadow: name=builder <86>May 17 13:05:22 groupadd[1092340]: new group: name=builder, GID=628 <86>May 17 13:05:22 useradd[1092354]: new user: name=builder, UID=628, GID=628, home=/usr/src, shell=/bin/bash <13>May 17 13:05:25 rpmi: libjpeg-2:2.0.2-alt1 sisyphus+226996.100.1.1 1554902907 installed <13>May 17 13:05:25 rpmi: libpng16-1.6.36-alt1 sisyphus+219478.100.1.1 1547633314 installed <13>May 17 13:05:25 rpmi: libexpat-2.2.4-alt1 1503305345 installed <13>May 17 13:05:25 rpmi: perl-HTTP-Date-6.02-alt1 1348645274 installed <13>May 17 13:05:25 rpmi: libjasper-2.0.14-alt1 1530105217 installed <13>May 17 13:05:25 rpmi: libgomp1-8.4.1-alt0.p9.1 p9+247559.100.2.1 1585587912 installed <13>May 17 13:05:25 rpmi: libwebp7-1.0.3-alt1 p9+234901.200.1.1 1563552457 installed <13>May 17 13:05:25 rpmi: libogg-1.3.4-alt1 p9+249556.100.1.1 1586300646 installed <13>May 17 13:05:26 rpmi: libicu64-1:6.4.2-alt1 sisyphus+227580.100.1.2 1555784329 installed <13>May 17 13:05:26 rpmi: libgnustep-objc2-1.7.0-alt14.svn20140704 sisyphus+221065.100.4.2 1549734427 installed <13>May 17 13:05:26 rpmi: libcom_err-1.44.6-alt1 sisyphus+224154.100.1.1 1552091678 installed <13>May 17 13:05:26 rpmi: libgdbm-1.8.3-alt10 1454943334 installed <13>May 17 13:05:26 rpmi: liblcms2-2.9-alt1 1516411892 installed <13>May 17 13:05:26 rpmi: libltdl7-2.4.6-alt1 sisyphus+226971.100.2.1 1554906368 installed <13>May 17 13:05:26 rpmi: libopenjpeg2.0-2.3.1-alt1 sisyphus+226454.100.1.1 1554284337 installed <13>May 17 13:05:26 rpmi: libjbig-2.1-alt1 1401380926 installed <13>May 17 13:05:26 rpmi: libtiff5-4.0.10.0.57.f9fc01c3-alt1 sisyphus+226958.100.1.1 1554850940 installed <13>May 17 13:05:26 rpmi: libICE-1.0.9-alt1 1409902721 installed <13>May 17 13:05:26 rpmi: libfribidi-1.0.7-alt1 p9+238309.200.1.1 1569787058 installed <13>May 17 13:05:26 rpmi: libglvnd-7:1.1.1-alt1 sisyphus+224993.100.4.1 1552634542 installed <13>May 17 13:05:26 rpmi: libwayland-server-1.17.0-alt1 sisyphus+225894.100.1.1 1553872805 installed <13>May 17 13:05:26 rpmi: ilmbase24-common-2.3.0-alt1 p9+237895.300.1.1 1568985250 installed <13>May 17 13:05:26 rpmi: libiex24-2.3.0-alt1 p9+237895.300.1.1 1568985250 installed <13>May 17 13:05:26 rpmi: libnettle6-3.4.1-alt1 sisyphus+226533.100.2.1 1554512222 installed <13>May 17 13:05:26 rpmi: libgpg-error-1.36-alt1 sisyphus+225621.300.1.1 1553521082 installed <13>May 17 13:05:26 rpmi: libgcrypt20-1.8.5-alt3 p9+239665.100.7.1 1586364779 installed <13>May 17 13:05:26 rpmi: libxslt-1.1.33-alt1 sisyphus+226936.100.1.1 1554820937 installed <13>May 17 13:05:26 rpmi: perl-LWP-MediaTypes-6.04-alt1 sisyphus+225468.100.1.1 1553186684 installed <13>May 17 13:05:26 rpmi: perl-Compress-Raw-Zlib-2.086-alt1 sisyphus+226395.100.1.2 1554269783 installed <13>May 17 13:05:26 rpmi: perl-libnet-1:3.11-alt1 1511423541 installed <13>May 17 13:05:26 rpmi: libalsa-1:1.1.9-alt2 sisyphus+229323.100.1.1 1557826759 installed <13>May 17 13:05:26 rpmi: libp11-kit-0.23.15-alt1 sisyphus+226408.100.2.1 1554288204 installed <13>May 17 13:05:26 rpmi: libtasn1-4.14-alt1 p9+235792.100.2.1 1565425233 installed <13>May 17 13:05:26 rpmi: libaspell-0.60.6.1-alt3 1534002619 installed <13>May 17 13:05:26 rpmi: aspell-0.60.6.1-alt3 1534002619 installed <13>May 17 13:05:27 rpmi: flite-2.1-alt1 sisyphus+222718.100.1.1 1551026084 installed <13>May 17 13:05:27 rpmi: libao-1:1.2.2-alt3 1512129138 installed <13>May 17 13:05:27 rpmi: libgpg-error-devel-1.36-alt1 sisyphus+225621.300.1.1 1553521082 installed <13>May 17 13:05:27 rpmi: libhogweed4-3.4.1-alt1 sisyphus+226533.100.2.1 1554512222 installed <13>May 17 13:05:27 rpmi: libilmthread24-2.3.0-alt1 p9+237895.300.1.1 1568985250 installed <13>May 17 13:05:27 rpmi: libhalf24-2.3.0-alt1 p9+237895.300.1.1 1568985250 installed <13>May 17 13:05:27 rpmi: libSM-1.2.3-alt1 sisyphus+226734.100.2.1 1554586158 installed <13>May 17 13:05:27 rpmi: libraw-0.19.5-alt1 p9+236466.300.1.1 1566485894 installed <13>May 17 13:05:27 rpmi: libgdbm-devel-1.8.3-alt10 1454943334 installed <13>May 17 13:05:27 rpmi: libe2fs-1.44.6-alt1 sisyphus+224154.100.1.1 1552091678 installed <13>May 17 13:05:27 rpmi: libss-1.44.6-alt1 sisyphus+224154.100.1.1 1552091678 installed <13>May 17 13:05:28 rpmi: e2fsprogs-1.44.6-alt1 sisyphus+224154.100.1.1 1552091678 installed <13>May 17 13:05:28 rpmi: libgnustep-objc2-devel-1.7.0-alt14.svn20140704 sisyphus+221065.100.4.2 1549734427 installed <13>May 17 13:05:28 rpmi: icu-utils-1:6.4.2-alt1 sisyphus+227580.100.1.2 1555784329 installed <13>May 17 13:05:28 rpmi: libflac8-1.3.3-alt1 p9+249557.100.1.1 1586302007 installed <13>May 17 13:05:28 rpmi: libvorbis-1.3.6-alt2 sisyphus+220072.200.2.2 1548744475 installed <13>May 17 13:05:28 rpmi: libicns-0.7.1-alt1.2 sisyphus+223351.100.1.1 1551468904 installed <13>May 17 13:05:28 rpmi: perl-File-Listing-6.04-alt1 1329758996 installed <13>May 17 13:05:28 rpmi: libflif-0.3-alt1 sisyphus+223364.100.1.1 1551501723 installed <13>May 17 13:05:28 rpmi: libxml2-devel-1:2.9.10-alt2 p9+240157.100.1.1 1572735327 installed <13>May 17 13:05:28 rpmi: libgif-4.1.6-alt3 1299634261 installed <13>May 17 13:05:28 rpmi: libImageMagick6-common-6.9.10.94-alt1 p9+244301.200.3.1 1582816114 installed <13>May 17 13:05:28 rpmi: libwmflite-0.2.8.4-alt13 1506519339 installed <13>May 17 13:05:28 rpmi: liblqr-0.4.2-alt1 1383038438 installed <13>May 17 13:05:28 rpmi: libx265-160-2.8-alt1 1529659188 installed <13>May 17 13:05:28 rpmi: libde265-1.0.3-alt1 1528888221 installed <13>May 17 13:05:28 rpmi: libfftw3-common-3.3.8-alt1 sisyphus+226899.100.1.1 1554782385 installed <13>May 17 13:05:28 rpmi: libfftw3-3.3.8-alt1 sisyphus+226899.100.1.1 1554783258 installed <13>May 17 13:05:28 rpmi: libgts-0.7.6-alt2.drc20130205.1 sisyphus+225727.500.8.1 1553672623 installed <13>May 17 13:05:28 rpmi: libpaper-1.1.26-alt1 sisyphus+221360.100.1.1 1549974197 installed <13>May 17 13:05:28 rpmi: icon-theme-hicolor-0.17-alt2 p9+248347.100.1.1 1584981172 installed <13>May 17 13:05:28 rpmi: shared-mime-info-1.13.1-alt1 p9+238204.100.1.1 1569496447 installed <13>May 17 13:05:28 rpmi: gsettings-desktop-schemas-data-3.32.0-alt1 sisyphus+225059.300.3.2 1552843929 installed <13>May 17 13:05:28 rpmi: libgio-2.60.7-alt1 p9+237353.100.2.2 1568373081 installed <13>May 17 13:05:28 rpmi: gsettings-desktop-schemas-3.32.0-alt1 sisyphus+225059.300.3.2 1552843980 installed <13>May 17 13:05:28 rpmi: libgdk-pixbuf-locales-2.38.2-alt1 p9+237353.1000.2.2 1568374008 installed <13>May 17 13:05:28 rpmi: libgdk-pixbuf-2.38.2-alt1 p9+237353.1000.2.2 1568374336 installed <13>May 17 13:05:28 rpmi: gtk-update-icon-cache-3.24.11-alt1 p9+237353.1200.2.2 1568374786 installed <13>May 17 13:05:28 rpmi: libheif-1.6.2-alt1 p9+244301.100.3.1 1582815559 installed <13>May 17 13:05:29 rpmi: libgtk+2-locales-2.24.32-alt3 sisyphus+227306.100.1.3 1555646039 installed <13>May 17 13:05:29 rpmi: libatk-locales-2.32.0-alt1 sisyphus+225059.600.3.2 1552845198 installed <13>May 17 13:05:29 rpmi: libatk-2.32.0-alt1 sisyphus+225059.600.3.2 1552845362 installed <13>May 17 13:05:29 rpmi: libdatrie-0.2.9-alt1_6 1511686676 installed <13>May 17 13:05:29 rpmi: libthai-0.1.28-alt1_1 sisyphus+226107.100.1.1 1554123079 installed <13>May 17 13:05:29 rpmi: libpixman-3:0.38.4-alt1 sisyphus+228006.100.1.1 1556013870 installed <13>May 17 13:05:29 rpmi: libgraphite2-1.3.13-alt2 sisyphus+226799.100.1.1 1554648241 installed <13>May 17 13:05:29 rpmi: libharfbuzz-2.6.2-alt1 p9+238790.200.1.1 1570435826 installed <13>May 17 13:05:29 rpmi: libfreetype-2.10.1-alt1 p9+247340.100.1.1 1583394177 installed <13>May 17 13:05:29 rpmi: fontconfig-2.13.1-alt1 p9+247340.200.3.1 1583400517 installed Updating fonts cache: <29>May 17 13:05:30 fontconfig: Updating fonts cache: succeeded [ DONE ] <13>May 17 13:05:30 rpmi: libraqm-0.5.0-alt1 1530413343 installed <13>May 17 13:05:30 rpmi: libxshmfence-1.3-alt1 sisyphus+223149.1000.2.1 1551268571 installed <13>May 17 13:05:30 rpmi: libwayland-client-1.17.0-alt1 sisyphus+225894.100.1.1 1553872805 installed <13>May 17 13:05:30 rpmi: libpciaccess-1:0.14-alt1 1528969252 installed <13>May 17 13:05:30 rpmi: libdrm-1:2.4.99-alt1 p9+236610.100.1.1 1566818128 installed <13>May 17 13:05:30 rpmi: libgbm-4:19.1.8-alt1.p9 p9+248560.100.2.1 1585561025 installed <13>May 17 13:05:30 rpmi: libX11-locales-3:1.6.7-alt1 sisyphus+226735.100.2.2 1554615009 installed <13>May 17 13:05:30 rpmi: libXdmcp-1.1.3-alt1 sisyphus+225206.600.1.2 1552949353 installed <13>May 17 13:05:30 rpmi: libXau-1.0.9-alt1 sisyphus+223149.200.2.1 1551268152 installed <13>May 17 13:05:30 rpmi: libxcb-1.13.1-alt1 sisyphus+226527.100.2.2 1554593801 installed <13>May 17 13:05:30 rpmi: libX11-3:1.6.7-alt1 sisyphus+226735.100.2.2 1554615005 installed <13>May 17 13:05:30 rpmi: libXext-1.3.4-alt1 sisyphus+225206.700.1.2 1552949429 installed <13>May 17 13:05:30 rpmi: libXrender-0.9.8-alt1 1371312112 installed <13>May 17 13:05:30 rpmi: libXfixes-5.0.3-alt1 sisyphus+226736.100.2.2 1554614841 installed <13>May 17 13:05:30 rpmi: libXdamage-1.1.5-alt1 sisyphus+225206.500.1.2 1552949286 installed <13>May 17 13:05:30 rpmi: libXcursor-1.2.0-alt1 sisyphus+225206.400.1.2 1552949218 installed <13>May 17 13:05:30 rpmi: libXft-2.3.3-alt1 sisyphus+225206.1000.3.2 1552987708 installed <13>May 17 13:05:30 rpmi: libXrandr-1.5.2-alt1 sisyphus+225206.1300.1.2 1552949710 installed <13>May 17 13:05:30 rpmi: libXxf86vm-1.1.4-alt2 1527672187 installed <13>May 17 13:05:30 rpmi: libGLX-mesa-4:19.1.8-alt1.p9 p9+248560.100.2.1 1585561025 installed <13>May 17 13:05:30 rpmi: libEGL-mesa-4:19.1.8-alt1.p9 p9+248560.100.2.1 1585561025 installed <13>May 17 13:05:30 rpmi: libEGL-7:1.1.1-alt1 sisyphus+224993.100.4.1 1552634542 installed <13>May 17 13:05:30 rpmi: libGLX-7:1.1.1-alt1 sisyphus+224993.100.4.1 1552634542 installed <13>May 17 13:05:30 rpmi: libGL-7:1.1.1-alt1 sisyphus+224993.100.4.1 1552634542 installed <13>May 17 13:05:30 rpmi: libcairo-1:1.16.0-alt1 sisyphus+226534.100.2.3 1554515535 installed <13>May 17 13:05:30 rpmi: libpango-1.44.6-alt1 p9+237353.700.2.2 1568374131 installed <13>May 17 13:05:30 rpmi: librsvg-1:2.46.4-alt1 p9+248366.400.6.1 1587062978 installed <13>May 17 13:05:30 rpmi: liblasi-1.1.2-alt1.qa1 1460141148 installed <13>May 17 13:05:30 rpmi: libXi-1.7.9-alt2 sisyphus+226377.100.1.2 1554260260 installed <13>May 17 13:05:30 rpmi: libXinerama-1.1.4-alt1 sisyphus+223149.300.2.1 1551268216 installed <13>May 17 13:05:30 rpmi: libXt-1.1.4-alt1 1369984722 installed <13>May 17 13:05:30 rpmi: libXpm-3.5.12-alt1 sisyphus+223149.400.2.1 1551268289 installed <13>May 17 13:05:30 rpmi: libgd3-2.2.5-alt3 sisyphus+226800.200.2.1 1554649317 installed <13>May 17 13:05:30 rpmi: libXcomposite-0.4.5-alt1 sisyphus+225206.300.1.2 1552949137 installed <13>May 17 13:05:30 rpmi: openexr24-common-2.3.0-alt1 p9+237895.400.1.1 1568985445 installed <13>May 17 13:05:31 rpmi: libilmimf24-2.3.0-alt1 p9+237895.400.1.1 1568985445 installed <13>May 17 13:05:31 rpmi: libgsm-1.0.17-alt1 1523356165 installed <13>May 17 13:05:31 rpmi: libsndfile-1.0.28-alt2 sisyphus.212728.100 1536333068 installed <13>May 17 13:05:31 rpmi: liblz4-1:1.9.2-alt1 p9+238696.500.1.1 1570228299 installed <13>May 17 13:05:31 rpmi: libsystemd-1:243.8-alt2 p9+249709.100.3.1 1586972032 installed <13>May 17 13:05:31 rpmi: libdbus-1.12.16-alt2 p9+240607.100.1.1 1573553687 installed <13>May 17 13:05:31 rpmi: libavahi-0.6.32-alt1 1500485702 installed <13>May 17 13:05:31 rpmi: libcups-2.3.1-alt1 p9+247593.200.5.1 1585155229 installed <13>May 17 13:05:31 rpmi: libgtk+2-2.24.32-alt3 sisyphus+227306.100.1.3 1555646092 installed <13>May 17 13:05:32 rpmi: libgs-9.27-alt1 p9+230401.100.1.1 1558957683 installed <13>May 17 13:05:32 rpmi: libgraphviz-2.40.1-alt7 p9+234240.100.1.1 1562765014 installed <13>May 17 13:05:32 rpmi: libidn2-2.2.0-alt1 p9+229971.100.2.1 1558696281 installed <13>May 17 13:05:32 rpmi: libgnutls30-3.6.13-alt1 p9+249005.100.1.1 1585668021 installed <13>May 17 13:05:32 rpmi: libgnustep-base-1:1.24.6-alt8.svn20140226 sisyphus+226762.1100.12.1 1555027832 installed <13>May 17 13:05:32 rpmi: perl-Try-Tiny-0.30-alt1 1514318058 installed <13>May 17 13:05:32 rpmi: perl-IO-Socket-IP-0.39-alt1 1494508514 installed <13>May 17 13:05:32 rpmi: perl-Compress-Raw-Bzip2-2.086-alt1 sisyphus+226394.100.1.2 1554269409 installed <13>May 17 13:05:32 rpmi: perl-HTML-Tagset-3.20-alt2 1317725093 installed <13>May 17 13:05:32 rpmi: perl-Filter-1.59-alt1.1 sisyphus+219907.400.1.1 1548343389 installed <13>May 17 13:05:32 rpmi: perl-Encode-3.01-alt1 sisyphus+224923.100.1.1 1552474122 installed <13>May 17 13:05:32 rpmi: perl-URI-1.76-alt1 sisyphus+220243.100.1.1 1548863244 installed <13>May 17 13:05:32 rpmi: perl-IO-Compress-2.086-alt1 sisyphus+226399.100.2.1 1554270186 installed <13>May 17 13:05:32 rpmi: perl-Net-HTTP-6.18-alt1 1526560501 installed <13>May 17 13:05:32 rpmi: perl-HTML-Parser-3.72-alt1.2 sisyphus+219907.600.1.1 1548343581 installed <13>May 17 13:05:32 rpmi: perl-WWW-RobotRules-6.02-alt1 1329756211 installed <13>May 17 13:05:32 rpmi: perl-Encode-Locale-1.05-alt1 1444608613 installed <13>May 17 13:05:32 rpmi: perl-IO-HTML-1.001-alt1 1404821752 installed <13>May 17 13:05:32 rpmi: perl-HTTP-Message-6.18-alt1 1528288416 installed <13>May 17 13:05:32 rpmi: perl-HTTP-Cookies-6.04-alt1 1504116575 installed <13>May 17 13:05:32 rpmi: perl-HTTP-Negotiate-6.01-alt1 1329760563 installed <13>May 17 13:05:32 rpmi: perl-XML-Writer-0.625-alt1 1402417374 installed <13>May 17 13:05:32 rpmi: perl-Term-ANSIColor-4.06-alt1 1479407083 installed <13>May 17 13:05:32 rpmi: perl-Data-Dump-1.23-alt1 1444601978 installed <13>May 17 13:05:32 rpmi: perl-libwww-6.39-alt1 sisyphus+229237.100.1.1 1557650051 installed <13>May 17 13:05:32 rpmi: perl-XML-Parser-2.44-alt2.2 sisyphus+219907.1300.1.1 1548343835 installed <13>May 17 13:05:32 rpmi: libdb4.7-devel-4.7.25-alt9 1490438479 installed <13>May 17 13:05:33 rpmi: perl-devel-1:5.28.2-alt2 p9+244939.100.2.1 1580477848 installed <13>May 17 13:05:33 rpmi: hwinfo-utils-21.23-alt1.1 sisyphus+223919.100.1.1 1551893139 installed <13>May 17 13:05:33 rpmi: gnustep-dirs-1.0-alt2 1355065931 installed <13>May 17 13:05:33 rpmi: gdb-common-8.2.50.20180917-alt4 p9+233347.100.1.1 1561650588 installed <13>May 17 13:05:33 rpmi: libobjc4-8.4.1-alt0.p9.1 p9+247559.100.2.1 1585587912 installed <13>May 17 13:05:33 rpmi: libobjc8-devel-8.4.1-alt0.p9.1 p9+247559.100.2.1 1585587912 installed <13>May 17 13:05:34 rpmi: gcc8-objc-8.4.1-alt0.p9.1 p9+247559.100.2.1 1585587912 installed <13>May 17 13:05:34 rpmi: gcc-objc-8-alt2 p9+246536.100.3.1 1582643803 installed <13>May 17 13:05:34 rpmi: djvu-common-3.5.25.3-alt1 1365826139 installed <13>May 17 13:05:34 rpmi: libdjvu-3.5.25.3-alt1 1365826139 installed <13>May 17 13:05:34 rpmi: libImageMagick6.6-6.9.10.94-alt1 p9+244301.200.3.1 1582816114 installed <13>May 17 13:05:34 rpmi: libgnustep-gui-0.24.0-alt8.svn20140223 sisyphus+227106.100.1.1 1555149570 installed <13>May 17 13:05:34 rpmi: gnustep-gui-0.24.0-alt8.svn20140223 sisyphus+227106.100.1.1 1555149570 installed <13>May 17 13:05:35 rpmi: llvm7.0-libs-7.0.1-alt4.rel p9+229920.100.1.1 1558623951 installed <13>May 17 13:05:36 rpmi: clang7.0-libs-7.0.1-alt4.rel p9+229920.100.1.1 1558623951 installed <13>May 17 13:05:36 rpmi: libverto-0.3.0-alt1_7 sisyphus+225932.100.1.1 1553994919 installed <13>May 17 13:05:36 rpmi: libkeyutils-1.6-alt2 sisyphus+226520.100.2.1 1554512089 installed <13>May 17 13:05:36 rpmi: rpm-macros-alternatives-0.5.1-alt1 sisyphus+226946.100.1.1 1554830426 installed <13>May 17 13:05:36 rpmi: alternatives-0.5.1-alt1 sisyphus+226946.100.1.1 1554830426 installed <13>May 17 13:05:36 rpmi: ca-certificates-2020.01.23-alt1 p9+245253.100.3.1 1580749631 installed <13>May 17 13:05:36 rpmi: ca-trust-0.1.2-alt1 p9+233349.100.1.1 1561655062 installed <13>May 17 13:05:36 rpmi: p11-kit-trust-0.23.15-alt1 sisyphus+226408.100.2.1 1554288204 installed <13>May 17 13:05:36 rpmi: libcrypto1.1-1.1.1g-alt1 p9+250580.100.5.1 1588175266 installed <13>May 17 13:05:36 rpmi: libssl1.1-1.1.1g-alt1 p9+250580.100.5.1 1588175266 installed <13>May 17 13:05:36 rpmi: python3-3.7.4-alt3 p9+249932.100.2.1 1587127349 installed <13>May 17 13:05:36 rpmi: libpython3-3.7.4-alt3 p9+249932.100.2.1 1587127349 installed <13>May 17 13:05:37 rpmi: python3-base-3.7.4-alt3 p9+249932.100.2.1 1587127349 installed <13>May 17 13:05:37 rpmi: gdb-8.2.50.20180917-alt4 p9+233347.100.1.1 1561650611 installed <13>May 17 13:05:37 rpmi: gnustep-make-2.6.6-alt20.svn20140202 sisyphus+221065.400.4.2 1549734566 installed <13>May 17 13:05:37 rpmi: gnustep-base-1:1.24.6-alt8.svn20140226 sisyphus+226762.1100.12.1 1555027832 installed <13>May 17 13:05:37 rpmi: gnustep-base-devel-1:1.24.6-alt8.svn20140226 sisyphus+226762.1100.12.1 1555027832 installed <86>May 17 13:05:37 groupadd[1111543]: group added to /etc/group: name=_keytab, GID=499 <86>May 17 13:05:37 groupadd[1111543]: group added to /etc/gshadow: name=_keytab <86>May 17 13:05:37 groupadd[1111543]: new group: name=_keytab, GID=499 <13>May 17 13:05:38 rpmi: libkrb5-1.17.1-alt1 p9+242852.100.2.1 1576572639 installed <13>May 17 13:05:38 rpmi: libtirpc-1.0.3-alt1 1532008017 installed <13>May 17 13:05:38 rpmi: libnsl2-1.1.0-alt1_1 1511548749 installed <13>May 17 13:05:38 rpmi: python-modules-encodings-2.7.16-alt1.M90P.1 p9+244933.100.1.1 1579867218 installed <13>May 17 13:05:38 rpmi: python-modules-compiler-2.7.16-alt1.M90P.1 p9+244933.100.1.1 1579867218 installed <13>May 17 13:05:38 rpmi: python-modules-email-2.7.16-alt1.M90P.1 p9+244933.100.1.1 1579867218 installed <13>May 17 13:05:38 rpmi: python-modules-unittest-2.7.16-alt1.M90P.1 p9+244933.100.1.1 1579867218 installed <13>May 17 13:05:38 rpmi: python-modules-nis-2.7.16-alt1.M90P.1 p9+244933.100.1.1 1579867218 installed <13>May 17 13:05:38 rpmi: python-modules-2.7.16-alt1.M90P.1 p9+244933.100.1.1 1579867218 installed <13>May 17 13:05:41 rpmi: clang7.0-7.0.1-alt4.rel p9+229920.100.1.1 1558623951 installed <13>May 17 13:05:42 rpmi: clang7.0-devel-7.0.1-alt4.rel p9+229920.100.1.1 1558623951 installed <13>May 17 13:05:42 rpmi: gnustep-gui-devel-0.24.0-alt8.svn20140223 sisyphus+227106.100.1.1 1555149570 installed <13>May 17 13:05:42 rpmi: gnustep-make-devel-2.6.6-alt20.svn20140202 sisyphus+221065.400.4.2 1549734565 installed <13>May 17 13:05:42 rpmi: libgnutls-devel-3.6.13-alt1 p9+249005.100.1.1 1585668021 installed <13>May 17 13:05:42 rpmi: libxslt-devel-1.1.33-alt1 sisyphus+226936.100.1.1 1554820937 installed <13>May 17 13:05:42 rpmi: libicu-devel-1:6.4.2-alt1 sisyphus+227580.100.1.2 1555784329 installed <13>May 17 13:05:42 rpmi: libgcrypt-devel-1.8.5-alt3 p9+239665.100.7.1 1586364779 installed <13>May 17 13:05:42 rpmi: zlib-devel-1.2.11-alt1 sisyphus+221902.6000.4.1 1550601058 installed <13>May 17 13:05:42 rpmi: libgmp-devel-6.1.2-alt3 sisyphus+229304.40.2.1 1557770992 installed <13>May 17 13:05:42 rpmi: libffi-devel-1:3.2.1-alt2 1528881777 installed Building target platforms: i586 Building for target i586 Wrote: /usr/src/in/nosrpm/gnustep-BioCocoa-2.2.2-alt3.nosrc.rpm Installing gnustep-BioCocoa-2.2.2-alt3.src.rpm Building target platforms: i586 Building for target i586 Executing(%prep): /bin/sh -e /usr/src/tmp/rpm-tmp.9845 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + rm -rf gnustep-BioCocoa-2.2.2 + echo 'Source #0 (gnustep-BioCocoa-2.2.2.tar):' Source #0 (gnustep-BioCocoa-2.2.2.tar): + /bin/tar -xf /usr/src/RPM/SOURCES/gnustep-BioCocoa-2.2.2.tar + cd gnustep-BioCocoa-2.2.2 + /bin/chmod -c -Rf u+rwX,go-w . + exit 0 Executing(%build): /bin/sh -e /usr/src/tmp/rpm-tmp.88257 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd gnustep-BioCocoa-2.2.2 + . /usr/share/GNUstep/Makefiles/GNUstep.sh ++ '[' -n '' ']' ++ GNUSTEP_MAKE_STRICT_V2_MODE=no ++ '[' -z '' ']' ++ GNUSTEP_CONFIG_FILE=/etc/GNUstep/GNUstep.conf ++ '[' -z '' ']' ++ GNUSTEP_USER_CONFIG_FILE=.GNUstep.conf ++ '[' -f /etc/GNUstep/GNUstep.conf ']' ++ . /etc/GNUstep/GNUstep.conf +++ GNUSTEP_SYSTEM_ROOT=/usr +++ GNUSTEP_LOCAL_ROOT=/usr +++ GNUSTEP_NETWORK_ROOT=/usr +++ GNUSTEP_USER_CONFIG_FILE=.GNUstep.conf +++ GNUSTEP_USER_DIR=GNUstep +++ GNUSTEP_USER_DEFAULTS_DIR=GNUstep/Defaults +++ GNUSTEP_MAKEFILES=/usr/share/GNUstep/Makefiles +++ GNUSTEP_SYSTEM_USERS_DIR=/home +++ GNUSTEP_NETWORK_USERS_DIR=/home +++ GNUSTEP_LOCAL_USERS_DIR=/home +++ GNUSTEP_SYSTEM_APPS=/usr/lib/GNUstep/Applications +++ GNUSTEP_SYSTEM_ADMIN_APPS=/usr/lib/GNUstep/Applications +++ GNUSTEP_SYSTEM_WEB_APPS=/usr/lib/GNUstep/WebApplications +++ GNUSTEP_SYSTEM_TOOLS=/usr/bin +++ GNUSTEP_SYSTEM_ADMIN_TOOLS=/usr/sbin +++ GNUSTEP_SYSTEM_LIBRARY=/usr/lib/GNUstep +++ GNUSTEP_SYSTEM_HEADERS=/usr/include +++ GNUSTEP_SYSTEM_LIBRARIES=/usr/lib +++ GNUSTEP_SYSTEM_DOC=/usr/share/doc/GNUstep +++ GNUSTEP_SYSTEM_DOC_MAN=/usr/share/man +++ GNUSTEP_SYSTEM_DOC_INFO=/usr/share/info +++ GNUSTEP_NETWORK_APPS=/usr/lib/GNUstep/Applications +++ GNUSTEP_NETWORK_ADMIN_APPS=/usr/lib/GNUstep/Applications +++ GNUSTEP_NETWORK_WEB_APPS=/usr/lib/GNUstep/WebApplications +++ GNUSTEP_NETWORK_TOOLS=/usr/bin +++ GNUSTEP_NETWORK_ADMIN_TOOLS=/usr/sbin +++ GNUSTEP_NETWORK_LIBRARY=/usr/lib/GNUstep +++ GNUSTEP_NETWORK_HEADERS=/usr/include +++ GNUSTEP_NETWORK_LIBRARIES=/usr/lib +++ GNUSTEP_NETWORK_DOC=/usr/share/doc/GNUstep +++ GNUSTEP_NETWORK_DOC_MAN=/usr/share/man +++ GNUSTEP_NETWORK_DOC_INFO=/usr/share/info +++ GNUSTEP_LOCAL_APPS=/usr/lib/GNUstep/Applications +++ GNUSTEP_LOCAL_ADMIN_APPS=/usr/lib/GNUstep/Applications +++ GNUSTEP_LOCAL_WEB_APPS=/usr/lib/GNUstep/WebApplications +++ GNUSTEP_LOCAL_TOOLS=/usr/bin +++ GNUSTEP_LOCAL_ADMIN_TOOLS=/usr/sbin +++ GNUSTEP_LOCAL_LIBRARY=/usr/lib/GNUstep +++ GNUSTEP_LOCAL_HEADERS=/usr/include +++ GNUSTEP_LOCAL_LIBRARIES=/usr/lib +++ GNUSTEP_LOCAL_DOC=/usr/share/doc/GNUstep +++ GNUSTEP_LOCAL_DOC_MAN=/usr/share/man +++ GNUSTEP_LOCAL_DOC_INFO=/usr/share/info +++ GNUSTEP_USER_DIR_APPS=GNUstep/Applications +++ GNUSTEP_USER_DIR_ADMIN_APPS=GNUstep/Applications/Admin +++ GNUSTEP_USER_DIR_WEB_APPS=GNUstep/WebApplications +++ GNUSTEP_USER_DIR_TOOLS=GNUstep/Tools +++ GNUSTEP_USER_DIR_ADMIN_TOOLS=GNUstep/Tools/Admin +++ GNUSTEP_USER_DIR_LIBRARY=GNUstep +++ GNUSTEP_USER_DIR_HEADERS=GNUstep/Headers +++ GNUSTEP_USER_DIR_LIBRARIES=GNUstep/Libraries +++ GNUSTEP_USER_DIR_DOC=GNUstep/Documentation +++ GNUSTEP_USER_DIR_DOC_MAN=GNUstep/Documentation/man +++ GNUSTEP_USER_DIR_DOC_INFO=GNUstep/Documentation/info ++ GNUSTEP_HOME=/usr/src ++ '[' -n .GNUstep.conf ']' ++ case "$GNUSTEP_USER_CONFIG_FILE" in ++ '[' -f /usr/src/.GNUstep.conf ']' ++ '[' no = yes ']' ++ '[' -z /usr ']' ++ '[' -z /usr ']' ++ '[' -z /usr ']' ++ export GNUSTEP_SYSTEM_ROOT GNUSTEP_LOCAL_ROOT GNUSTEP_NETWORK_ROOT ++ '[' no = yes ']' ++ GNUSTEP_FLATTENED=yes ++ export GNUSTEP_FLATTENED ++ GNUSTEP_IS_FLATTENED=yes ++ '[' -z gnu-gnu-gnu ']' ++ '[' '!' no = yes ']' ++ export GNUSTEP_IS_FLATTENED LIBRARY_COMBO ++ '[' -z /usr/share/GNUstep/Makefiles ']' ++ export GNUSTEP_MAKEFILES ++ '[' no = yes ']' ++ '[' -z GNUstep ']' ++ case "$GNUSTEP_USER_DIR" in ++ GNUSTEP_USER_ROOT=/usr/src/GNUstep ++ unset GNUSTEP_USER_DIR ++ export GNUSTEP_USER_ROOT ++ '[' -z '' ']' ++ GNUSTEP_HOST= ++ GNUSTEP_HOST_CPU= ++ GNUSTEP_HOST_VENDOR=alt ++ GNUSTEP_HOST_OS=linux-gnu ++ '[' -z '' ']' +++ pwd ++ tmpdir=/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2 ++ cd /tmp +++ /usr/share/GNUstep/Makefiles/config.guess ++ GNUSTEP_HOST=i686-pc-linux-gnu +++ /usr/share/GNUstep/Makefiles/config.sub i686-pc-linux-gnu ++ GNUSTEP_HOST=i686-pc-linux-gnu ++ cd /usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2 ++ unset tmpdir ++ '[' -z '' ']' +++ /usr/share/GNUstep/Makefiles/cpu.sh i686-pc-linux-gnu ++ GNUSTEP_HOST_CPU=i686 +++ /usr/share/GNUstep/Makefiles/clean_cpu.sh i686 ++ GNUSTEP_HOST_CPU=ix86 ++ '[' -z alt ']' ++ '[' -z linux-gnu ']' ++ '[' '!' no = yes ']' ++ export GNUSTEP_HOST GNUSTEP_HOST_CPU GNUSTEP_HOST_VENDOR GNUSTEP_HOST_OS ++ . /usr/share/GNUstep/Makefiles/filesystem.sh +++ '[' -z /home ']' +++ '[' -z /home ']' +++ '[' -z /home ']' +++ '[' -z /usr/lib/GNUstep/Applications ']' +++ '[' -z /usr/lib/GNUstep/Applications ']' +++ '[' -z /usr/lib/GNUstep/WebApplications ']' +++ '[' -z /usr/bin ']' +++ '[' -z /usr/sbin ']' +++ '[' -z /usr/lib/GNUstep ']' +++ '[' -z /usr/include ']' +++ '[' -z /usr/lib ']' +++ '[' -z /usr/share/doc/GNUstep ']' +++ '[' -z /usr/share/man ']' +++ '[' -z /usr/share/info ']' +++ '[' -z /usr/lib/GNUstep/Applications ']' +++ '[' -z /usr/lib/GNUstep/Applications ']' +++ '[' -z /usr/lib/GNUstep/WebApplications ']' +++ '[' -z /usr/bin ']' +++ '[' -z /usr/sbin ']' +++ '[' -z /usr/lib/GNUstep ']' +++ '[' -z /usr/include ']' +++ '[' -z /usr/lib ']' +++ '[' -z /usr/share/doc/GNUstep ']' +++ '[' -z /usr/share/man ']' +++ '[' -z /usr/share/info ']' +++ '[' -z /usr/lib/GNUstep/Applications ']' +++ '[' -z /usr/lib/GNUstep/Applications ']' +++ '[' -z /usr/lib/GNUstep/WebApplications ']' +++ '[' -z /usr/bin ']' +++ '[' -z /usr/sbin ']' +++ '[' -z /usr/lib/GNUstep ']' +++ '[' -z /usr/include ']' +++ '[' -z /usr/lib ']' +++ '[' -z /usr/share/doc/GNUstep ']' +++ '[' -z /usr/share/man ']' +++ '[' -z /usr/share/info ']' +++ '[' -z GNUstep/Applications ']' +++ '[' -z GNUstep/Applications/Admin ']' +++ '[' -z GNUstep/WebApplications ']' +++ '[' -z GNUstep/Tools ']' +++ '[' -z GNUstep/Tools/Admin ']' +++ '[' -z GNUstep ']' +++ '[' -z GNUstep/Headers ']' +++ '[' -z GNUstep/Libraries ']' +++ '[' -z GNUstep/Documentation ']' +++ '[' -z GNUstep/Documentation/man ']' +++ '[' -z GNUstep/Documentation/info ']' +++ case "${GNUSTEP_USER_DIR_APPS} ${GNUSTEP_USER_DIR_ADMIN_APPS} ${GNUSTEP_USER_DIR_WEB_APPS} ${GNUSTEP_USER_DIR_TOOLS} ${GNUSTEP_USER_DIR_ADMIN_TOOLS} ${GNUSTEP_USER_DIR_LIBRARY} ${GNUSTEP_USER_DIR_HEADERS} ${GNUSTEP_USER_DIR_LIBRARIES} ${GNUSTEP_USER_DIR_DOC} ${GNUSTEP_USER_DIR_DOC_MAN} ${GNUSTEP_USER_DIR_DOC_INFO}" in +++ case "${GNUSTEP_USER_DIR_APPS} ${GNUSTEP_USER_DIR_ADMIN_APPS} ${GNUSTEP_USER_DIR_WEB_APPS} ${GNUSTEP_USER_DIR_TOOLS} ${GNUSTEP_USER_DIR_ADMIN_TOOLS} ${GNUSTEP_USER_DIR_LIBRARY} ${GNUSTEP_USER_DIR_HEADERS} ${GNUSTEP_USER_DIR_LIBRARIES} ${GNUSTEP_USER_DIR_DOC} ${GNUSTEP_USER_DIR_DOC_MAN} ${GNUSTEP_USER_DIR_DOC_INFO}" in +++ case "${GNUSTEP_USER_DIR_APPS} ${GNUSTEP_USER_DIR_ADMIN_APPS} ${GNUSTEP_USER_DIR_WEB_APPS} ${GNUSTEP_USER_DIR_TOOLS} ${GNUSTEP_USER_DIR_ADMIN_TOOLS} ${GNUSTEP_USER_DIR_LIBRARY} ${GNUSTEP_USER_DIR_HEADERS} ${GNUSTEP_USER_DIR_LIBRARIES} ${GNUSTEP_USER_DIR_DOC} ${GNUSTEP_USER_DIR_DOC_MAN} ${GNUSTEP_USER_DIR_DOC_INFO}" in +++ case "$GNUSTEP_USER_DIR_APPS" in +++ GNUSTEP_USER_APPS=/usr/src/GNUstep/Applications +++ unset GNUSTEP_USER_DIR_APPS +++ case "$GNUSTEP_USER_DIR_ADMIN_APPS" in +++ GNUSTEP_USER_ADMIN_APPS=/usr/src/GNUstep/Applications/Admin +++ unset GNUSTEP_USER_DIR_ADMIN_APPS +++ case "$GNUSTEP_USER_DIR_WEB_APPS" in +++ GNUSTEP_USER_WEB_APPS=/usr/src/GNUstep/WebApplications +++ unset GNUSTEP_USER_DIR_WEB_APPS +++ case "$GNUSTEP_USER_DIR_TOOLS" in +++ GNUSTEP_USER_TOOLS=/usr/src/GNUstep/Tools +++ unset GNUSTEP_USER_DIR_TOOLS +++ case "$GNUSTEP_USER_DIR_ADMIN_TOOLS" in +++ GNUSTEP_USER_ADMIN_TOOLS=/usr/src/GNUstep/Tools/Admin +++ unset GNUSTEP_USER_DIR_ADMIN_TOOLS +++ case "$GNUSTEP_USER_DIR_LIBRARY" in +++ GNUSTEP_USER_LIBRARY=/usr/src/GNUstep +++ unset GNUSTEP_USER_DIR_LIBRARY +++ case "$GNUSTEP_USER_DIR_HEADERS" in +++ GNUSTEP_USER_HEADERS=/usr/src/GNUstep/Headers +++ unset GNUSTEP_USER_DIR_HEADERS +++ case "$GNUSTEP_USER_DIR_LIBRARIES" in +++ GNUSTEP_USER_LIBRARIES=/usr/src/GNUstep/Libraries +++ unset GNUSTEP_USER_DIR_LIBRARIES +++ case "$GNUSTEP_USER_DIR_DOC" in +++ GNUSTEP_USER_DOC=/usr/src/GNUstep/Documentation +++ unset GNUSTEP_USER_DIR_DOC +++ case "$GNUSTEP_USER_DIR_DOC_MAN" in +++ GNUSTEP_USER_DOC_MAN=/usr/src/GNUstep/Documentation/man +++ unset GNUSTEP_USER_DIR_DOC_MAN +++ case "$GNUSTEP_USER_DIR_DOC_INFO" in +++ GNUSTEP_USER_DOC_INFO=/usr/src/GNUstep/Documentation/info +++ unset GNUSTEP_USER_DIR_DOC_INFO ++ unset GNUSTEP_HOME ++ fixup_paths=no +++ echo /usr/share/GNUstep/Makefiles +++ sed 's|^[a-zA-Z]:/.*$||' ++ path_check=/usr/share/GNUstep/Makefiles ++ '[' -z /usr/share/GNUstep/Makefiles ']' ++ unset path_check ++ '[' no = yes ']' ++ '[' -z /usr:/usr/src/GNUstep ']' +++ /usr/share/GNUstep/Makefiles/print_unique_pathlist.sh /usr/src/GNUstep/Tools /usr/bin /usr/bin /usr/bin no ++ GNUSTEP_TOOLS_PATHLIST=/usr/bin:/usr/src/GNUstep/Tools ++ for dir in "$GNUSTEP_SYSTEM_ADMIN_TOOLS" "$GNUSTEP_NETWORK_ADMIN_TOOLS" "$GNUSTEP_LOCAL_ADMIN_TOOLS" "$GNUSTEP_USER_ADMIN_TOOLS" ++ '[' -d /usr/sbin -a -w /usr/sbin ']' ++ for dir in "$GNUSTEP_SYSTEM_ADMIN_TOOLS" "$GNUSTEP_NETWORK_ADMIN_TOOLS" "$GNUSTEP_LOCAL_ADMIN_TOOLS" "$GNUSTEP_USER_ADMIN_TOOLS" ++ '[' -d /usr/sbin -a -w /usr/sbin ']' ++ for dir in "$GNUSTEP_SYSTEM_ADMIN_TOOLS" "$GNUSTEP_NETWORK_ADMIN_TOOLS" "$GNUSTEP_LOCAL_ADMIN_TOOLS" "$GNUSTEP_USER_ADMIN_TOOLS" ++ '[' -d /usr/sbin -a -w /usr/sbin ']' ++ for dir in "$GNUSTEP_SYSTEM_ADMIN_TOOLS" "$GNUSTEP_NETWORK_ADMIN_TOOLS" "$GNUSTEP_LOCAL_ADMIN_TOOLS" "$GNUSTEP_USER_ADMIN_TOOLS" ++ '[' -d /usr/src/GNUstep/Tools/Admin -a -w /usr/src/GNUstep/Tools/Admin ']' ++ old_IFS=' ' ++ IFS=: ++ for dir in $GNUSTEP_TOOLS_PATHLIST ++ '[' yes = no ']' ++ path_fragment=/usr/bin ++ '[' -z /usr/src/GNUstep/Tools:/usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games ']' ++ echo :/usr/src/GNUstep/Tools:/usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games: ++ grep -v :/usr/bin: ++ for dir in $GNUSTEP_TOOLS_PATHLIST ++ '[' yes = no ']' ++ path_fragment=/usr/src/GNUstep/Tools ++ '[' -z /usr/src/GNUstep/Tools:/usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games ']' ++ echo :/usr/src/GNUstep/Tools:/usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games: ++ grep -v :/usr/src/GNUstep/Tools: ++ IFS=' ' ++ unset old_IFS ++ unset dir ++ unset path_fragment ++ unset GNUSTEP_TOOLS_PATHLIST ++ export PATH +++ /usr/share/GNUstep/Makefiles/print_unique_pathlist.sh /usr/src/GNUstep/Libraries /usr/lib /usr/lib /usr/lib no ++ GNUSTEP_LIBRARIES_PATHLIST=/usr/lib:/usr/src/GNUstep/Libraries ++ old_IFS=' ' ++ IFS=: ++ for dir in $GNUSTEP_LIBRARIES_PATHLIST ++ '[' yes = yes ']' ++ path_fragment=/usr/lib ++ case "$GNUSTEP_HOST_OS" in ++ '[' -z /usr/src/GNUstep/Libraries:/usr/lib ']' ++ echo :/usr/src/GNUstep/Libraries:/usr/lib: ++ grep -v :/usr/lib: ++ export LD_LIBRARY_PATH ++ for dir in $GNUSTEP_LIBRARIES_PATHLIST ++ '[' yes = yes ']' ++ path_fragment=/usr/src/GNUstep/Libraries ++ case "$GNUSTEP_HOST_OS" in ++ '[' -z /usr/src/GNUstep/Libraries:/usr/lib ']' ++ echo :/usr/src/GNUstep/Libraries:/usr/lib: ++ grep -v :/usr/src/GNUstep/Libraries: ++ export LD_LIBRARY_PATH ++ IFS=' ' ++ unset old_IFS ++ unset dir ++ unset path_fragment ++ unset GNUSTEP_LIBRARIES_PATHLIST ++ case "$GNUSTEP_HOST_OS" in +++ /usr/share/GNUstep/Makefiles/print_unique_pathlist.sh /usr/src/GNUstep /usr/lib/GNUstep /usr/lib/GNUstep /usr/lib/GNUstep no ++ GNUSTEP_LIBRARY_PATHLIST=/usr/lib/GNUstep:/usr/src/GNUstep ++ old_IFS=' ' ++ IFS=: ++ for dir in $GNUSTEP_LIBRARY_PATHLIST ++ path_fragment=/usr/lib/GNUstep/Libraries/Java ++ '[' -z /usr/src/GNUstep/Libraries/Java:/usr/lib/GNUstep/Libraries/Java ']' ++ echo :/usr/src/GNUstep/Libraries/Java:/usr/lib/GNUstep/Libraries/Java: ++ grep -v :/usr/lib/GNUstep/Libraries/Java: ++ path_fragment=/usr/lib/GNUstep/Libraries/Guile ++ '[' -z /usr/src/GNUstep/Libraries/Guile:/usr/lib/GNUstep/Libraries/Guile ']' ++ echo :/usr/src/GNUstep/Libraries/Guile:/usr/lib/GNUstep/Libraries/Guile: ++ grep -v :/usr/lib/GNUstep/Libraries/Guile: ++ for dir in $GNUSTEP_LIBRARY_PATHLIST ++ path_fragment=/usr/src/GNUstep/Libraries/Java ++ '[' -z /usr/src/GNUstep/Libraries/Java:/usr/lib/GNUstep/Libraries/Java ']' ++ echo :/usr/src/GNUstep/Libraries/Java:/usr/lib/GNUstep/Libraries/Java: ++ grep -v :/usr/src/GNUstep/Libraries/Java: ++ path_fragment=/usr/src/GNUstep/Libraries/Guile ++ '[' -z /usr/src/GNUstep/Libraries/Guile:/usr/lib/GNUstep/Libraries/Guile ']' ++ echo :/usr/src/GNUstep/Libraries/Guile:/usr/lib/GNUstep/Libraries/Guile: ++ grep -v :/usr/src/GNUstep/Libraries/Guile: ++ IFS=' ' ++ unset old_IFS ++ unset dir ++ unset path_fragment ++ unset GNUSTEP_LIBRARY_PATHLIST ++ export CLASSPATH ++ export GUILE_LOAD_PATH +++ /usr/share/GNUstep/Makefiles/print_unique_pathlist.sh /usr/src/GNUstep/Documentation/info /usr/share/info /usr/share/info /usr/share/info no ++ GNUSTEP_INFO_PATHLIST=/usr/share/info:/usr/src/GNUstep/Documentation/info ++ old_IFS=' ' ++ IFS=: ++ for dir in $GNUSTEP_INFO_PATHLIST ++ '[' -z /usr/share/info::/usr/src/GNUstep/Documentation/info: ']' ++ echo :/usr/share/info::/usr/src/GNUstep/Documentation/info:: ++ grep -v :/usr/share/info: ++ for dir in $GNUSTEP_INFO_PATHLIST ++ '[' -z /usr/share/info::/usr/src/GNUstep/Documentation/info: ']' ++ echo :/usr/share/info::/usr/src/GNUstep/Documentation/info:: ++ grep -v :/usr/src/GNUstep/Documentation/info: ++ IFS=' ' ++ unset old_IFS ++ unset dir ++ unset GNUSTEP_INFO_PATHLIST ++ export INFOPATH ++ '[' -n '' ']' ++ '[' no = yes ']' ++ unset GNUSTEP_MAKE_STRICT_V2_MODE ++ '[' -z '' ']' ++ unset GNUSTEP_CONFIG_FILE ++ unset GNUSTEP_KEEP_CONFIG_FILE ++ '[' -z '' ']' ++ unset GNUSTEP_USER_CONFIG_FILE ++ unset GNUSTEP_KEEP_USER_CONFIG_FILE ++ unset GNUSTEP_USER_DEFAULTS_DIR ++ unset GNUSTEP_SYSTEM_APPS ++ unset GNUSTEP_SYSTEM_ADMIN_APPS ++ unset GNUSTEP_SYSTEM_WEB_APPS ++ unset GNUSTEP_SYSTEM_TOOLS ++ unset GNUSTEP_SYSTEM_ADMIN_TOOLS ++ unset GNUSTEP_SYSTEM_LIBRARY ++ unset GNUSTEP_SYSTEM_HEADERS ++ unset GNUSTEP_SYSTEM_LIBRARIES ++ unset GNUSTEP_SYSTEM_DOC ++ unset GNUSTEP_SYSTEM_DOC_MAN ++ unset GNUSTEP_SYSTEM_DOC_INFO ++ unset GNUSTEP_NETWORK_APPS ++ unset GNUSTEP_NETWORK_ADMIN_APPS ++ unset GNUSTEP_NETWORK_WEB_APPS ++ unset GNUSTEP_NETWORK_TOOLS ++ unset GNUSTEP_NETWORK_ADMIN_TOOLS ++ unset GNUSTEP_NETWORK_LIBRARY ++ unset GNUSTEP_NETWORK_HEADERS ++ unset GNUSTEP_NETWORK_LIBRARIES ++ unset GNUSTEP_NETWORK_DOC ++ unset GNUSTEP_NETWORK_DOC_MAN ++ unset GNUSTEP_NETWORK_DOC_INFO ++ unset GNUSTEP_LOCAL_APPS ++ unset GNUSTEP_LOCAL_ADMIN_APPS ++ unset GNUSTEP_LOCAL_WEB_APPS ++ unset GNUSTEP_LOCAL_TOOLS ++ unset GNUSTEP_LOCAL_ADMIN_TOOLS ++ unset GNUSTEP_LOCAL_LIBRARY ++ unset GNUSTEP_LOCAL_HEADERS ++ unset GNUSTEP_LOCAL_LIBRARIES ++ unset GNUSTEP_LOCAL_DOC ++ unset GNUSTEP_LOCAL_DOC_MAN ++ unset GNUSTEP_LOCAL_DOC_INFO ++ unset GNUSTEP_USER_APPS ++ unset GNUSTEP_USER_ADMIN_APPS ++ unset GNUSTEP_USER_WEB_APPS ++ unset GNUSTEP_USER_TOOLS ++ unset GNUSTEP_USER_ADMIN_TOOLS ++ unset GNUSTEP_USER_LIBRARY ++ unset GNUSTEP_USER_HEADERS ++ unset GNUSTEP_USER_LIBRARIES ++ unset GNUSTEP_USER_DOC ++ unset GNUSTEP_USER_DOC_MAN ++ unset GNUSTEP_USER_DOC_INFO ++ unset GNUSTEP_SYSTEM_USERS_DIR ++ unset GNUSTEP_LOCAL_USERS_DIR ++ unset GNUSTEP_NETWORK_USERS_DIR ++ '[' -n '' ']' + make -j8 messages=yes debug=yes strip=no shared=yes 'CONFIG_SYSTEM_LIBS=-lgnustep-base -lobjc2' make: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2' This is gnustep-make 2.6.6. Type 'gmake print-gnustep-make-help' for help. make: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2' Making build-headers in subprojects of framework BioCocoa... Making build-headers in subprojects of subproject BCFoundation... Making build-headers for subproject BCAlignment... /usr/share/GNUstep/Makefiles/mkinstalldirs ../../BioCocoa.framework/Versions/2/Headers /bin/install -c -p -m 644 BCPairwiseAlignment.h ../../BioCocoa.framework/Versions/2/Headers/BCPairwiseAlignment.h /bin/install -c -p -m 644 BCScoreMatrix.h ../../BioCocoa.framework/Versions/2/Headers/BCScoreMatrix.h /bin/install -c -p -m 644 BCSequenceAlignment.h ../../BioCocoa.framework/Versions/2/Headers/BCSequenceAlignment.h Making build-headers for subproject BCAnalysis... /bin/install -c -p -m 644 BCMCP.h ../../BioCocoa.framework/Versions/2/Headers/BCMCP.h /bin/install -c -p -m 644 BCSuffixArray.h ../../BioCocoa.framework/Versions/2/Headers/BCSuffixArray.h Making build-headers for subproject BCGeneExpression... /bin/install -c -p -m 644 BCSeries.h ../../BioCocoa.framework/Versions/2/Headers/BCSeries.h /bin/install -c -p -m 644 BCSample.h ../../BioCocoa.framework/Versions/2/Headers/BCSample.h /bin/install -c -p -m 644 BCPlatform.h ../../BioCocoa.framework/Versions/2/Headers/BCPlatform.h /bin/install -c -p -m 644 BCParseSOFT.h ../../BioCocoa.framework/Versions/2/Headers/BCParseSOFT.h Making build-headers for subproject BCGeneticCode... /bin/install -c -p -m 644 BCCodonDNA.h ../../BioCocoa.framework/Versions/2/Headers/BCCodonDNA.h /bin/install -c -p -m 644 BCCodon.h ../../BioCocoa.framework/Versions/2/Headers/BCCodon.h /bin/install -c -p -m 644 BCCodonRNA.h ../../BioCocoa.framework/Versions/2/Headers/BCCodonRNA.h /bin/install -c -p -m 644 BCGeneticCode.h ../../BioCocoa.framework/Versions/2/Headers/BCGeneticCode.h Making build-headers for subproject BCProteinStructure... /bin/install -c -p -m 644 BCAtom.h ../../BioCocoa.framework/Versions/2/Headers/BCAtom.h /bin/install -c -p -m 644 BCProteinStructure.h ../../BioCocoa.framework/Versions/2/Headers/BCProteinStructure.h /bin/install -c -p -m 644 BCSecondaryStructure.h ../../BioCocoa.framework/Versions/2/Headers/BCSecondaryStructure.h /bin/install -c -p -m 644 BCChain.h ../../BioCocoa.framework/Versions/2/Headers/BCChain.h /bin/install -c -p -m 644 BCResidue.h ../../BioCocoa.framework/Versions/2/Headers/BCResidue.h /bin/install -c -p -m 644 BCSequenceStructure.h ../../BioCocoa.framework/Versions/2/Headers/BCSequenceStructure.h Making build-headers for subproject BCSequence... /bin/install -c -p -m 644 BCAnnotation.h ../../BioCocoa.framework/Versions/2/Headers/BCAnnotation.h /bin/install -c -p -m 644 BCSequence.h ../../BioCocoa.framework/Versions/2/Headers/BCSequence.h /bin/install -c -p -m 644 BCSequenceArray.h ../../BioCocoa.framework/Versions/2/Headers/BCSequenceArray.h /bin/install -c -p -m 644 BCSequenceCodon.h ../../BioCocoa.framework/Versions/2/Headers/BCSequenceCodon.h Making build-headers for subproject BCSequenceIO... /bin/install -c -p -m 644 BCSequenceReader.h ../../BioCocoa.framework/Versions/2/Headers/BCSequenceReader.h /bin/install -c -p -m 644 BCSequenceWriter.h ../../BioCocoa.framework/Versions/2/Headers/BCSequenceWriter.h /bin/install -c -p -m 644 BCCachedSequenceFile.h ../../BioCocoa.framework/Versions/2/Headers/BCCachedSequenceFile.h /bin/install -c -p -m 644 BCCachedFastaFile.h ../../BioCocoa.framework/Versions/2/Headers/BCCachedFastaFile.h Making build-headers for subproject BCSymbol... /bin/install -c -p -m 644 BCAminoAcid.h ../../BioCocoa.framework/Versions/2/Headers/BCAminoAcid.h /bin/install -c -p -m 644 BCNucleotide.h ../../BioCocoa.framework/Versions/2/Headers/BCNucleotide.h /bin/install -c -p -m 644 BCSymbol.h ../../BioCocoa.framework/Versions/2/Headers/BCSymbol.h /bin/install -c -p -m 644 BCNucleotideDNA.h ../../BioCocoa.framework/Versions/2/Headers/BCNucleotideDNA.h /bin/install -c -p -m 644 BCNucleotideRNA.h ../../BioCocoa.framework/Versions/2/Headers/BCNucleotideRNA.h /bin/install -c -p -m 644 BCSymbolSet.h ../../BioCocoa.framework/Versions/2/Headers/BCSymbolSet.h Making build-headers for subproject BCTools... /bin/install -c -p -m 644 BCSequenceTool.h ../../BioCocoa.framework/Versions/2/Headers/BCSequenceTool.h /bin/install -c -p -m 644 BCToolDigest.h ../../BioCocoa.framework/Versions/2/Headers/BCToolDigest.h /bin/install -c -p -m 644 BCToolHydropathyCalculator.h ../../BioCocoa.framework/Versions/2/Headers/BCToolHydropathyCalculator.h /bin/install -c -p -m 644 BCToolMassCalculator.h ../../BioCocoa.framework/Versions/2/Headers/BCToolMassCalculator.h /bin/install -c -p -m 644 BCToolComplement.h ../../BioCocoa.framework/Versions/2/Headers/BCToolComplement.h /bin/install -c -p -m 644 BCToolSequenceFinder.h ../../BioCocoa.framework/Versions/2/Headers/BCToolSequenceFinder.h /bin/install -c -p -m 644 BCToolSymbolCounter.h ../../BioCocoa.framework/Versions/2/Headers/BCToolSymbolCounter.h /bin/install -c -p -m 644 BCToolTranslator.h ../../BioCocoa.framework/Versions/2/Headers/BCToolTranslator.h /bin/install -c -p -m 644 BCToolTranslatorDNA.h ../../BioCocoa.framework/Versions/2/Headers/BCToolTranslatorDNA.h Making build-headers for subproject BCUtils... /bin/install -c -p -m 644 BCDataMatrix.h ../../BioCocoa.framework/Versions/2/Headers/BCDataMatrix.h /bin/install -c -p -m 644 BCUtilData.h ../../BioCocoa.framework/Versions/2/Headers/BCUtilData.h /bin/install -c -p -m 644 BCUtilStrings.h ../../BioCocoa.framework/Versions/2/Headers/BCUtilStrings.h Making build-headers for subproject BCFoundation... /bin/install -c -p -m 644 BCFoundation.h ../BioCocoa.framework/Versions/2/Headers/BCFoundation.h /bin/install -c -p -m 644 BCFoundationDefines.h ../BioCocoa.framework/Versions/2/Headers/BCFoundationDefines.h /bin/install -c -p -m 644 BCStringDefinitions.h ../BioCocoa.framework/Versions/2/Headers/BCStringDefinitions.h /bin/install -c -p -m 644 BCPreferences.h ../BioCocoa.framework/Versions/2/Headers/BCPreferences.h Making build-headers for framework BioCocoa... /usr/share/GNUstep/Makefiles/mkinstalldirs ./derived_src; \ touch derived_src/.stamp /usr/share/GNUstep/Makefiles/mkinstalldirs BioCocoa.framework/Versions/2/Resources cd ./BioCocoa.framework/Versions; \ rm -f Current; \ ln -s 2 Current cd ./BioCocoa.framework; \ if [ ! -h "Resources" ]; then \ rm -f Resources; \ ln -s Versions/Current/Resources Resources; \ fi; \ if [ ! -h "Headers" ]; then \ rm -f Headers; \ ln -s Versions/Current/Headers Headers; \ fi cd ./derived_src; \ if [ ! -h "BioCocoa" ]; then \ rm -f ./BioCocoa; \ ln -s ../BioCocoa.framework/Headers \ ./BioCocoa; \ fi make: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2' cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj make: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2' Making all in subprojects of framework BioCocoa... gmake[1]: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation' cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj gmake[1]: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation' Making all in subprojects of subproject BCFoundation... gmake[2]: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCAlignment' cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj gmake[2]: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCAlignment' Making all for subproject BCAlignment... cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/BCAlignment.obj/ gcc BCSequenceAlignment.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCAlignment.obj/BCSequenceAlignment.m.o gcc BCScoreMatrix.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCAlignment.obj/BCScoreMatrix.m.o gcc BCPairwiseAlignment.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCAlignment.obj/BCPairwiseAlignment.m.o gcc -nostdlib -r -shared-libgcc -pthread -fexceptions -o ./obj/subproject.o obj/BCAlignment.obj/BCPairwiseAlignment.m.o obj/BCAlignment.obj/BCScoreMatrix.m.o obj/BCAlignment.obj/BCSequenceAlignment.m.o ; gmake[2]: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCAnalysis' cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj gmake[2]: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCAnalysis' Making all for subproject BCAnalysis... cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/BCAnalysis.obj/ gcc BCSuffixArray.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCAnalysis.obj/BCSuffixArray.m.o BCSuffixArray.m: In function '-[BCSuffixArray dumpSuffixArray]': BCSuffixArray.m:896:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&sa1Offset, sizeof(int), 1, sa1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCSuffixArray.m:897:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&sa1File, sizeof(int), 1, sa1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCSuffixArray.m:932:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&sa1Offset, sizeof(int), 1, sa1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCSuffixArray.m:933:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&sa1File, sizeof(int), 1, sa1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCSuffixArray.m: In function '-[BCSuffixArrayUnionEnumerator nextSuffixPosition:sequence:suffixArray:]': BCSuffixArray.m:1464:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(suffixPositions[i]), sizeof(int), 1, arrayFiles[i]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCSuffixArray.m:1465:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(suffixSequences[i]), sizeof(int), 1, arrayFiles[i]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCSuffixArray.m:1598:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(suffixPositions[currentSuffix]), sizeof(int), 1, arrayFiles[currentSuffix]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCSuffixArray.m:1599:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(suffixSequences[currentSuffix]), sizeof(int), 1, arrayFiles[currentSuffix]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc BCMCP.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCAnalysis.obj/BCMCP.m.o BCMCP.m: In function '+[BCMCP mcpToFile:suffixArray:withSuffixArray:lowerBound:]': BCMCP.m:160:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&sa1Offset, sizeof(int), 1, sa1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:161:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&sa1File, sizeof(int), 1, sa1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:163:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&sa2Offset, sizeof(int), 1, sa2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:164:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&sa2File, sizeof(int), 1, sa2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:334:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&sa2Offset, sizeof(int), 1, sa2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:335:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&sa2File, sizeof(int), 1, sa2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:352:11: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&sa1Offset, sizeof(int), 1, sa1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:353:11: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&sa1File, sizeof(int), 1, sa1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:358:11: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&sa2Offset, sizeof(int), 1, sa2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:359:11: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&sa2File, sizeof(int), 1, sa2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:366:11: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&sa2Offset, sizeof(int), 1, sa2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:367:11: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&sa2File, sizeof(int), 1, sa2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m: In function '-[BCMCP intersectToFile:withMCP:]': BCMCP.m:486:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcp1Length, sizeof(int), 1, mcp1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:487:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcp1NumFiles, sizeof(int), 1, mcp1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:489:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcp1Offset[i]), sizeof(int), 1, mcp1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:490:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcp1File[i]), sizeof(int), 1, mcp1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:514:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcp2Length, sizeof(int), 1, mcp2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:515:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcp2NumFiles, sizeof(int), 1, mcp2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:517:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcp2Offset[i]), sizeof(int), 1, mcp2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:518:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcp2File[i]), sizeof(int), 1, mcp2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:735:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcp1Length, sizeof(int), 1, mcp1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:736:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcp1NumFiles, sizeof(int), 1, mcp1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:738:11: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcp1Offset[i]), sizeof(int), 1, mcp1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:739:11: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcp1File[i]), sizeof(int), 1, mcp1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:762:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcp2Length, sizeof(int), 1, mcp2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:763:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcp2NumFiles, sizeof(int), 1, mcp2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:765:11: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcp2Offset[i]), sizeof(int), 1, mcp2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:766:11: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcp2File[i]), sizeof(int), 1, mcp2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m: In function '-[BCMCP unionToFile:withMCP:]': BCMCP.m:910:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcp1Length, sizeof(int), 1, mcp1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:911:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcp1NumFiles, sizeof(int), 1, mcp1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:913:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcp1Offset[i]), sizeof(int), 1, mcp1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:914:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcp1File[i]), sizeof(int), 1, mcp1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:936:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcp2Length, sizeof(int), 1, mcp2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:937:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcp2NumFiles, sizeof(int), 1, mcp2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:939:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcp2Offset[i]), sizeof(int), 1, mcp2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:940:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcp2File[i]), sizeof(int), 1, mcp2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1093:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcp1Length, sizeof(int), 1, mcp1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1094:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcp1NumFiles, sizeof(int), 1, mcp1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1096:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcp1Offset[i]), sizeof(int), 1, mcp1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1097:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcp1File[i]), sizeof(int), 1, mcp1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1123:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcp2Length, sizeof(int), 1, mcp2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1124:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcp2NumFiles, sizeof(int), 1, mcp2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1126:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcp2Offset[i]), sizeof(int), 1, mcp2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1127:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcp2File[i]), sizeof(int), 1, mcp2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1167:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcp1Length, sizeof(int), 1, mcp1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1168:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcp1NumFiles, sizeof(int), 1, mcp1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1170:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcp1Offset[i]), sizeof(int), 1, mcp1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1171:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcp1File[i]), sizeof(int), 1, mcp1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1186:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcp2Length, sizeof(int), 1, mcp2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1187:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcp2NumFiles, sizeof(int), 1, mcp2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1189:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcp2Offset[i]), sizeof(int), 1, mcp2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1190:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcp2File[i]), sizeof(int), 1, mcp2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1222:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcp2Length, sizeof(int), 1, mcp2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1223:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcp2NumFiles, sizeof(int), 1, mcp2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1225:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcp2Offset[i]), sizeof(int), 1, mcp2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1226:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcp2File[i]), sizeof(int), 1, mcp2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1239:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcp1Length, sizeof(int), 1, mcp1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1240:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcp1NumFiles, sizeof(int), 1, mcp1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1242:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcp1Offset[i]), sizeof(int), 1, mcp1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1243:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcp1File[i]), sizeof(int), 1, mcp1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m: In function '-[BCMCP trimToFile:]': BCMCP.m:1272:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcpLength, sizeof(int), 1, mcp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1273:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcpNumFiles, sizeof(int), 1, mcp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1275:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcpOffset[i]), sizeof(int), 1, mcp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1276:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcpFile[i]), sizeof(int), 1, mcp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m: In function '-[BCMCP outputFormat:withMinimumLength:]': BCMCP.m:1481:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcpLength, sizeof(int), 1, mcp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1482:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcpNumFiles, sizeof(int), 1, mcp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1485:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcpOffset[i]), sizeof(int), 1, mcp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1486:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcpFile[i]), sizeof(int), 1, mcp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1603:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcpLength, sizeof(int), 1, mcp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1604:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&mcpNumFiles, sizeof(int), 1, mcp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1606:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcpOffset[i]), sizeof(int), 1, mcp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCMCP.m:1607:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(mcpFile[i]), sizeof(int), 1, mcp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -nostdlib -r -shared-libgcc -pthread -fexceptions -o ./obj/subproject.o obj/BCAnalysis.obj/BCMCP.m.o obj/BCAnalysis.obj/BCSuffixArray.m.o ; gmake[2]: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCGeneExpression' cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj gmake[2]: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCGeneExpression' Making all for subproject BCGeneExpression... cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/BCGeneExpression.obj/ gcc BCPlatform.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCGeneExpression.obj/BCPlatform.m.o gcc BCSample.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCGeneExpression.obj/BCSample.m.o gcc BCSeries.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCGeneExpression.obj/BCSeries.m.o gcc BCParseSOFT.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCGeneExpression.obj/BCParseSOFT.m.o gcc -nostdlib -r -shared-libgcc -pthread -fexceptions -o ./obj/subproject.o obj/BCGeneExpression.obj/BCSeries.m.o obj/BCGeneExpression.obj/BCSample.m.o obj/BCGeneExpression.obj/BCPlatform.m.o obj/BCGeneExpression.obj/BCParseSOFT.m.o ; gmake[2]: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCGeneticCode' cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj gmake[2]: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCGeneticCode' Making all for subproject BCGeneticCode... cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/BCGeneticCode.obj/ gcc BCCodonDNA.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCGeneticCode.obj/BCCodonDNA.m.o gcc BCCodon.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCGeneticCode.obj/BCCodon.m.o gcc BCCodonRNA.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCGeneticCode.obj/BCCodonRNA.m.o gcc BCGeneticCode.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCGeneticCode.obj/BCGeneticCode.m.o BCGeneticCode.m: In function '+[BCGeneticCode priv:createCodonArraysFromDictionary:]': BCGeneticCode.m:221:23: warning: variable 'RNACodon' set but not used [-Wunused-but-set-variable] BCCodon *aCodon, *RNACodon; ^~~~~~~~ gcc -nostdlib -r -shared-libgcc -pthread -fexceptions -o ./obj/subproject.o obj/BCGeneticCode.obj/BCCodonDNA.m.o obj/BCGeneticCode.obj/BCCodon.m.o obj/BCGeneticCode.obj/BCCodonRNA.m.o obj/BCGeneticCode.obj/BCGeneticCode.m.o ; gmake[2]: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCProteinStructure' cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj gmake[2]: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCProteinStructure' Making all for subproject BCProteinStructure... cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/BCProteinStructure.obj/ gcc BCChain.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCProteinStructure.obj/BCChain.m.o gcc BCSecondaryStructure.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCProteinStructure.obj/BCSecondaryStructure.m.o gcc BCProteinStructure.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCProteinStructure.obj/BCProteinStructure.m.o gcc BCSequenceStructure.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCProteinStructure.obj/BCSequenceStructure.m.o gcc BCAtom.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCProteinStructure.obj/BCAtom.m.o gcc BCResidue.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCProteinStructure.obj/BCResidue.m.o gcc -nostdlib -r -shared-libgcc -pthread -fexceptions -o ./obj/subproject.o obj/BCProteinStructure.obj/BCAtom.m.o obj/BCProteinStructure.obj/BCProteinStructure.m.o obj/BCProteinStructure.obj/BCSecondaryStructure.m.o obj/BCProteinStructure.obj/BCChain.m.o obj/BCProteinStructure.obj/BCResidue.m.o obj/BCProteinStructure.obj/BCSequenceStructure.m.o ; gmake[2]: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCSequence' cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj gmake[2]: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCSequence' Making all for subproject BCSequence... cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/BCSequence.obj/ gcc BCSequenceArray.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCSequence.obj/BCSequenceArray.m.o gcc BCAnnotation.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCSequence.obj/BCAnnotation.m.o gcc BCSequence.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCSequence.obj/BCSequence.m.o gcc BCSequenceCodon.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCSequence.obj/BCSequenceCodon.m.o BCSequenceCodon.m: In function '-[BCSequenceCodon openReadingFramesLongerThanCutoff:]': BCSequenceCodon.m:301:16: warning: 'inORF' may be used uninitialized in this function [-Wmaybe-uninitialized] if ( inORF ) ^ gcc -nostdlib -r -shared-libgcc -pthread -fexceptions -o ./obj/subproject.o obj/BCSequence.obj/BCAnnotation.m.o obj/BCSequence.obj/BCSequence.m.o obj/BCSequence.obj/BCSequenceArray.m.o obj/BCSequence.obj/BCSequenceCodon.m.o ; gmake[2]: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCSequenceIO' cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj gmake[2]: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCSequenceIO' Making all for subproject BCSequenceIO... cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/BCSequenceIO.obj/ gcc BCSequenceWriter.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCSequenceIO.obj/BCSequenceWriter.m.o gcc BCCachedSequenceFile.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCSequenceIO.obj/BCCachedSequenceFile.m.o gcc BCCachedFastaFile.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCSequenceIO.obj/BCCachedFastaFile.m.o BCCachedFastaFile.m: In function '-[BCCachedFastaFile initWithContentsOfFile:]': BCCachedFastaFile.m:58:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&c, sizeof(char), 1, g1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCCachedFastaFile.m:73:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&c, sizeof(char), 1, g1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCCachedFastaFile.m:76:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&c, sizeof(char), 1, g1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCCachedFastaFile.m:97:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&c, sizeof(char), 1, g1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCCachedFastaFile.m: In function '-[BCCachedFastaFile symbols:ForCurrentSequenceAtPosition:ofLength:]': BCCachedFastaFile.m:149:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&c, sizeof(char), 1, fileHandle); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCCachedFastaFile.m: In function '-[BCCachedFastaFile initWithContentsOfFile:]': BCCachedFastaFile.m:104:3: warning: 'filePos' may be used uninitialized in this function [-Wmaybe-uninitialized] [d setObject: [NSNumber numberWithUnsignedLongLong: (filePos - 1)] forKey: @"end"]; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc BCSequenceReader.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCSequenceIO.obj/BCSequenceReader.m.o BCSequenceReader.m: In function '-[BCSequenceReader readFileUsingText:]': BCSequenceReader.m:167:3: warning: no '-initWithRTF:documentAttributes:' method found NSAttributedString *rtfstring = [[NSAttributedString alloc] initWithRTF: [entryString dataUsingEncoding: NSUTF8StringEncoding] documentAttributes: nil]; ^~~~~~~~~~~~~~~~~~ BCSequenceReader.m:167:3: warning: (Messages without a matching method signature BCSequenceReader.m:167:3: warning: will be assumed to return 'id' and accept BCSequenceReader.m:167:3: warning: '...' as arguments.) BCSequenceReader.m: In function '-[BCSequenceReader readMacVectorFile:]': BCSequenceReader.m:651:18: warning: variable 'annotationsArray' set but not used [-Wunused-but-set-variable] NSMutableArray *annotationsArray; ^~~~~~~~~~~~~~~~ BCSequenceReader.m: In function '-[BCSequenceReader readClustalFile:]': BCSequenceReader.m:798:3: warning: passing argument 2 of 'scanUpToString:intoString:' from incompatible pointer type [-Wincompatible-pointer-types] [lineScanner scanUpToString:@" " intoString: nil]; ^ BCSequenceReader.m:798:3: note: expected 'struct NSString **' but argument is of type 'id' BCSequenceReader.m: In function '-[BCSequenceReader readPhylipFile:]': BCSequenceReader.m:1113:31: warning: variable 'annotationsArray' set but not used [-Wunused-but-set-variable] NSMutableArray *linesArray, *annotationsArray, *namesArray, *sequenceArray; ^~~~~~~~~~~~~~~~ BCSequenceReader.m: In function '-[BCSequenceReader readSwissProtFile:]': BCSequenceReader.m:421:2: warning: 'sequenceString' may be used uninitialized in this function [-Wmaybe-uninitialized] if ( [sequenceString length]) ~~~~~~~~~~~~~~~~~~~~~~~ BCSequenceReader.m: In function '-[BCSequenceReader readClustalFile:]': BCSequenceReader.m:822:3: warning: 'sequenceRange.location' may be used uninitialized in this function [-Wmaybe-uninitialized] sequenceString = [line substringFromIndex: sequenceRange.location]; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BCSequenceReader.m: In function '-[BCSequenceReader readFASTQFile:]': BCSequenceReader.m:1310:6: warning: 'seqData' may be used uninitialized in this function [-Wmaybe-uninitialized] BCSequence *newSequence = [[BCSequence alloc] initWithData: seqData symbolSet: nil]; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -nostdlib -r -shared-libgcc -pthread -fexceptions -o ./obj/subproject.o obj/BCSequenceIO.obj/BCSequenceReader.m.o obj/BCSequenceIO.obj/BCSequenceWriter.m.o obj/BCSequenceIO.obj/BCCachedSequenceFile.m.o obj/BCSequenceIO.obj/BCCachedFastaFile.m.o ; gmake[2]: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCSymbol' cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj gmake[2]: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCSymbol' Making all for subproject BCSymbol... cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/BCSymbol.obj/ gcc BCSymbol.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCSymbol.obj/BCSymbol.m.o gcc BCNucleotideDNA.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCSymbol.obj/BCNucleotideDNA.m.o gcc BCSymbolSet.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCSymbol.obj/BCSymbolSet.m.o gcc BCAminoAcid.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCSymbol.obj/BCAminoAcid.m.o gcc BCNucleotide.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCSymbol.obj/BCNucleotide.m.o gcc BCNucleotideRNA.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCSymbol.obj/BCNucleotideRNA.m.o gcc -nostdlib -r -shared-libgcc -pthread -fexceptions -o ./obj/subproject.o obj/BCSymbol.obj/BCAminoAcid.m.o obj/BCSymbol.obj/BCNucleotide.m.o obj/BCSymbol.obj/BCSymbol.m.o obj/BCSymbol.obj/BCNucleotideDNA.m.o obj/BCSymbol.obj/BCNucleotideRNA.m.o obj/BCSymbol.obj/BCSymbolSet.m.o ; gmake[2]: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCTools' cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj gmake[2]: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCTools' Making all for subproject BCTools... cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/BCTools.obj/ gcc BCSequenceTool.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCTools.obj/BCSequenceTool.m.o gcc BCToolDigest.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCTools.obj/BCToolDigest.m.o gcc BCToolSymbolCounter.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCTools.obj/BCToolSymbolCounter.m.o gcc BCToolTranslator.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCTools.obj/BCToolTranslator.m.o gcc BCToolTranslatorDNA.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCTools.obj/BCToolTranslatorDNA.m.o gcc BCToolComplement.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCTools.obj/BCToolComplement.m.o gcc BCToolHydropathyCalculator.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCTools.obj/BCToolHydropathyCalculator.m.o gcc BCToolMassCalculator.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCTools.obj/BCToolMassCalculator.m.o gcc BCToolSequenceFinder.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCTools.obj/BCToolSequenceFinder.m.o gcc -nostdlib -r -shared-libgcc -pthread -fexceptions -o ./obj/subproject.o obj/BCTools.obj/BCSequenceTool.m.o obj/BCTools.obj/BCToolDigest.m.o obj/BCTools.obj/BCToolHydropathyCalculator.m.o obj/BCTools.obj/BCToolMassCalculator.m.o obj/BCTools.obj/BCToolComplement.m.o obj/BCTools.obj/BCToolSequenceFinder.m.o obj/BCTools.obj/BCToolSymbolCounter.m.o obj/BCTools.obj/BCToolTranslator.m.o obj/BCTools.obj/BCToolTranslatorDNA.m.o ; gmake[2]: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCUtils' cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj gmake[2]: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCUtils' Making all for subproject BCUtils... cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/BCUtils.obj/ gcc BCUtilData.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCUtils.obj/BCUtilData.m.o gcc BCUtilStrings.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCUtils.obj/BCUtilStrings.m.o BCUtilStrings.m: In function '-[NSString(StringAdditions) stringBeginsWithTwoNumbers]': BCUtilStrings.m:98:2: warning: passing argument 1 of 'scanInt:' from incompatible pointer type [-Wincompatible-pointer-types] if ([scanner scanInt:nil]) ^~ BCUtilStrings.m:98:2: note: expected 'int *' but argument is of type 'id' BCUtilStrings.m:100:3: warning: passing argument 1 of 'scanInt:' from incompatible pointer type [-Wincompatible-pointer-types] if ([scanner scanInt:nil]) ^~ BCUtilStrings.m:100:3: note: expected 'int *' but argument is of type 'id' gcc BCDataMatrix.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I.. -I../BCAnalysis -I../BCGeneticCode -I../BCProteinStructure -I../BCSequence -I../BCSequenceIO -I../BCSymbol -I../BCTools -I../BCTools/BCDigest -I../BCTools/BCSequenceProperty -I../BCTools/BCSequenceTools -I../BCTools/BCTranslation -I../BCUtils -I./../../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCUtils.obj/BCDataMatrix.m.o gcc -nostdlib -r -shared-libgcc -pthread -fexceptions -o ./obj/subproject.o obj/BCUtils.obj/BCDataMatrix.m.o obj/BCUtils.obj/BCUtilData.m.o obj/BCUtils.obj/BCUtilStrings.m.o ; Making all for subproject BCFoundation... cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/BCFoundation.obj/ gcc BCStringDefinitions.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I. -I./BCAnalysis -I./BCGeneticCode -I./BCProteinStructure -I./BCSequence -I./BCSequenceIO -I./BCSymbol -I./BCTools -I./BCTools/BCDigest -I./BCTools/BCSequenceProperty -I./BCTools/BCSequenceTools -I./BCTools/BCTranslation -I./BCUtils -I./../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCFoundation.obj/BCStringDefinitions.m.o gcc BCPreferences.m -c \ -MMD -MP -Wno-import -Wno-unknown-pragmas -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I. -I./BCAnalysis -I./BCGeneticCode -I./BCProteinStructure -I./BCSequence -I./BCSequenceIO -I./BCSymbol -I./BCTools -I./BCTools/BCDigest -I./BCTools/BCSequenceProperty -I./BCTools/BCSequenceTools -I./BCTools/BCTranslation -I./BCUtils -I./../derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 \ -o obj/BCFoundation.obj/BCPreferences.m.o gcc -nostdlib -r -shared-libgcc -pthread -fexceptions -o ./obj/subproject.o obj/BCFoundation.obj/BCStringDefinitions.m.o obj/BCFoundation.obj/BCPreferences.m.o BCAlignment/obj/subproject.o BCAnalysis/obj/subproject.o BCGeneExpression/obj/subproject.o BCGeneticCode/obj/subproject.o BCProteinStructure/obj/subproject.o BCSequence/obj/subproject.o BCSequenceIO/obj/subproject.o BCSymbol/obj/subproject.o BCTools/obj/subproject.o BCUtils/obj/subproject.o ; Making all for framework BioCocoa... cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/BioCocoa.obj/ classes=""; \ for object_file in ./BCFoundation/obj/subproject.o __dummy__; do \ if [ "$object_file" != "__dummy__" ]; then \ sym=`nm -Pg $object_file | sed -n -e '/^__objc_class_name_[A-Za-z0-9_.]* [^U]/ {s/^__objc_class_name_\([A-Za-z0-9_.]*\) [^U].*/\1/p;}'`; \ classes="$classes $sym"; \ fi; \ done; \ classlist=""; \ classarray=""; \ for f in $classes __dummy__ ; do \ if [ "$f" != "__dummy__" ]; then \ if [ "$classlist" = "" ]; then \ classlist="@\"$f\""; \ classarray="(\"$f\""; \ else \ classlist="$classlist, @\"$f\""; \ classarray="$classarray, \"$f\""; \ fi; \ fi; \ done; \ if [ "$classlist" = "" ]; then \ classlist="NULL"; \ classarray="()"; \ else \ classlist="$classlist, NULL"; \ classarray="$classarray)"; \ fi; \ echo "$classarray" > ./derived_src/BioCocoa-class-list; \ echo "#include " > derived_src/NSFramework_BioCocoa.m; \ echo "#include " > derived_src/NSFramework_BioCocoa.m; \ echo "@interface NSFramework_BioCocoa : NSObject" >> derived_src/NSFramework_BioCocoa.m; \ echo "+ (NSString *)frameworkEnv;" >> derived_src/NSFramework_BioCocoa.m; \ echo "+ (NSString *)frameworkPath;" >> derived_src/NSFramework_BioCocoa.m; \ echo "+ (NSString *)frameworkVersion;" >> derived_src/NSFramework_BioCocoa.m; \ echo "+ (NSString *const*)frameworkClasses;" >> derived_src/NSFramework_BioCocoa.m; \ echo "@end" >> derived_src/NSFramework_BioCocoa.m; \ echo "@implementation NSFramework_BioCocoa" >> derived_src/NSFramework_BioCocoa.m; \ echo "+ (NSString *)frameworkEnv { return nil; }" >> derived_src/NSFramework_BioCocoa.m; \ echo "+ (NSString *)frameworkPath { return @\"/usr/lib/GNUstep/Frameworks\"; }" >> derived_src/NSFramework_BioCocoa.m; \ echo "+ (NSString *)frameworkVersion { return @\"2\"; }" >> derived_src/NSFramework_BioCocoa.m; \ echo "static NSString *allClasses[] = {$classlist};" >> derived_src/NSFramework_BioCocoa.m; \ echo "+ (NSString *const*)frameworkClasses { return allClasses; }" >> derived_src/NSFramework_BioCocoa.m;\ echo "@end" >> derived_src/NSFramework_BioCocoa.m gcc derived_src/NSFramework_BioCocoa.m -c -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=0 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -DDEBUG -fno-omit-frame-pointer -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -pipe -Wall -g -pipe -Wall -g -O2 -DGNUSTEP -DGNU_RUNTIME -fgnu-runtime -fconstant-string-class=NSConstantString -fexec-charset=UTF-8 -I./derived_src -I. -I/usr/src/GNUstep/Headers -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/include/libxml2 -o obj/BioCocoa.obj/NSFramework_BioCocoa.o \ gcc -shared -Wl,-soname,libBioCocoa.so.2 -rdynamic -shared-libgcc -pthread -fexceptions -o ./BioCocoa.framework/Versions/2/./libBioCocoa.so.2.2.2 obj/BioCocoa.obj/NSFramework_BioCocoa.o BCFoundation/obj/subproject.o -L/usr/src/GNUstep/Libraries -L/usr/lib -L/usr/lib -L/usr/lib -L/usr/lib -lgnustep-base -lobjc2 && (cd ./BioCocoa.framework/Versions/2/.; rm -f libBioCocoa.so; if [ "libBioCocoa.so.2" != "libBioCocoa.so.2.2.2" ]; then rm -f libBioCocoa.so.2; ln -s libBioCocoa.so.2.2.2 libBioCocoa.so.2; fi; ln -s libBioCocoa.so.2 libBioCocoa.so; ) || rm -f ./BioCocoa.framework/Versions/2/./libBioCocoa.so.2.2.2 ; \ (cd ./BioCocoa.framework/Versions/2/.; \ rm -f BioCocoa; \ ln -s libBioCocoa.so BioCocoa) \ /usr/bin/ld.default: BCFoundation/obj/subproject.o: in function `_i_BCSuffixArray__constructFromSequenceArray_strand_': /usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2/BCFoundation/BCAnalysis/BCSuffixArray.m:513: warning: the use of `mktemp' is dangerous, better use `mkstemp' or `mkdtemp' for f in BCFoundation/BCSymbol/SymbolTemplates/nucleotides.plist BCFoundation/BCSymbol/SymbolTemplates/aminoacids.plist; do \ if [ -f .//$f -o -d .//$f ]; then \ cp -fr .//$f ./BioCocoa.framework/Versions/2/Resources/; \ else \ echo "Warning: .//$f not found - ignoring"; \ fi; \ done for subproject in BCFoundation; do \ if [ -d $subproject/Resources/Subproject ]; then \ for f in $subproject/Resources/Subproject/*; do \ if [ $f != $subproject'/Resources/Subproject/*' ]; then \ cp -fr $f ./BioCocoa.framework/Versions/2/Resources/; \ fi; \ done; \ fi; \ done (echo "{"; echo ' NOTE = "Automatically generated, do not edit!";'; \ echo " NSExecutable = \"BioCocoa\";"; \ echo " NSMainNibFile = \"\";"; \ echo " NSPrincipalClass = \"BioCocoa\";"; \ echo " Classes = "; \ cat ./derived_src/BioCocoa-class-list; \ echo " ;"; \ echo "}") >BioCocoa.framework/Versions/2/Resources/Info-gnustep.plist if [ -r "" ]; then \ plmerge BioCocoa.framework/Versions/2/Resources/Info-gnustep.plist ; \ fi cd ./BioCocoa.framework/.; \ rm -f BioCocoa libBioCocoa.so; \ ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh . \ Versions/Current/./BioCocoa short` \ BioCocoa; \ ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh . \ Versions/Current/./libBioCocoa.so short` \ libBioCocoa.so + exit 0 Executing(%install): /bin/sh -e /usr/src/tmp/rpm-tmp.50645 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + /bin/chmod -Rf u+rwX -- /usr/src/tmp/gnustep-BioCocoa-buildroot + : + /bin/rm -rf -- /usr/src/tmp/gnustep-BioCocoa-buildroot + cd gnustep-BioCocoa-2.2.2 + . /usr/share/GNUstep/Makefiles/GNUstep.sh ++ '[' -n '' ']' ++ GNUSTEP_MAKE_STRICT_V2_MODE=no ++ '[' -z '' ']' ++ GNUSTEP_CONFIG_FILE=/etc/GNUstep/GNUstep.conf ++ '[' -z '' ']' ++ GNUSTEP_USER_CONFIG_FILE=.GNUstep.conf ++ '[' -f /etc/GNUstep/GNUstep.conf ']' ++ . /etc/GNUstep/GNUstep.conf +++ GNUSTEP_SYSTEM_ROOT=/usr +++ GNUSTEP_LOCAL_ROOT=/usr +++ GNUSTEP_NETWORK_ROOT=/usr +++ GNUSTEP_USER_CONFIG_FILE=.GNUstep.conf +++ GNUSTEP_USER_DIR=GNUstep +++ GNUSTEP_USER_DEFAULTS_DIR=GNUstep/Defaults +++ GNUSTEP_MAKEFILES=/usr/share/GNUstep/Makefiles +++ GNUSTEP_SYSTEM_USERS_DIR=/home +++ GNUSTEP_NETWORK_USERS_DIR=/home +++ GNUSTEP_LOCAL_USERS_DIR=/home +++ GNUSTEP_SYSTEM_APPS=/usr/lib/GNUstep/Applications +++ GNUSTEP_SYSTEM_ADMIN_APPS=/usr/lib/GNUstep/Applications +++ GNUSTEP_SYSTEM_WEB_APPS=/usr/lib/GNUstep/WebApplications +++ GNUSTEP_SYSTEM_TOOLS=/usr/bin +++ GNUSTEP_SYSTEM_ADMIN_TOOLS=/usr/sbin +++ GNUSTEP_SYSTEM_LIBRARY=/usr/lib/GNUstep +++ GNUSTEP_SYSTEM_HEADERS=/usr/include +++ GNUSTEP_SYSTEM_LIBRARIES=/usr/lib +++ GNUSTEP_SYSTEM_DOC=/usr/share/doc/GNUstep +++ GNUSTEP_SYSTEM_DOC_MAN=/usr/share/man +++ GNUSTEP_SYSTEM_DOC_INFO=/usr/share/info +++ GNUSTEP_NETWORK_APPS=/usr/lib/GNUstep/Applications +++ GNUSTEP_NETWORK_ADMIN_APPS=/usr/lib/GNUstep/Applications +++ GNUSTEP_NETWORK_WEB_APPS=/usr/lib/GNUstep/WebApplications +++ GNUSTEP_NETWORK_TOOLS=/usr/bin +++ GNUSTEP_NETWORK_ADMIN_TOOLS=/usr/sbin +++ GNUSTEP_NETWORK_LIBRARY=/usr/lib/GNUstep +++ GNUSTEP_NETWORK_HEADERS=/usr/include +++ GNUSTEP_NETWORK_LIBRARIES=/usr/lib +++ GNUSTEP_NETWORK_DOC=/usr/share/doc/GNUstep +++ GNUSTEP_NETWORK_DOC_MAN=/usr/share/man +++ GNUSTEP_NETWORK_DOC_INFO=/usr/share/info +++ GNUSTEP_LOCAL_APPS=/usr/lib/GNUstep/Applications +++ GNUSTEP_LOCAL_ADMIN_APPS=/usr/lib/GNUstep/Applications +++ GNUSTEP_LOCAL_WEB_APPS=/usr/lib/GNUstep/WebApplications +++ GNUSTEP_LOCAL_TOOLS=/usr/bin +++ GNUSTEP_LOCAL_ADMIN_TOOLS=/usr/sbin +++ GNUSTEP_LOCAL_LIBRARY=/usr/lib/GNUstep +++ GNUSTEP_LOCAL_HEADERS=/usr/include +++ GNUSTEP_LOCAL_LIBRARIES=/usr/lib +++ GNUSTEP_LOCAL_DOC=/usr/share/doc/GNUstep +++ GNUSTEP_LOCAL_DOC_MAN=/usr/share/man +++ GNUSTEP_LOCAL_DOC_INFO=/usr/share/info +++ GNUSTEP_USER_DIR_APPS=GNUstep/Applications +++ GNUSTEP_USER_DIR_ADMIN_APPS=GNUstep/Applications/Admin +++ GNUSTEP_USER_DIR_WEB_APPS=GNUstep/WebApplications +++ GNUSTEP_USER_DIR_TOOLS=GNUstep/Tools +++ GNUSTEP_USER_DIR_ADMIN_TOOLS=GNUstep/Tools/Admin +++ GNUSTEP_USER_DIR_LIBRARY=GNUstep +++ GNUSTEP_USER_DIR_HEADERS=GNUstep/Headers +++ GNUSTEP_USER_DIR_LIBRARIES=GNUstep/Libraries +++ GNUSTEP_USER_DIR_DOC=GNUstep/Documentation +++ GNUSTEP_USER_DIR_DOC_MAN=GNUstep/Documentation/man +++ GNUSTEP_USER_DIR_DOC_INFO=GNUstep/Documentation/info ++ GNUSTEP_HOME=/usr/src ++ '[' -n .GNUstep.conf ']' ++ case "$GNUSTEP_USER_CONFIG_FILE" in ++ '[' -f /usr/src/.GNUstep.conf ']' ++ '[' no = yes ']' ++ '[' -z /usr ']' ++ '[' -z /usr ']' ++ '[' -z /usr ']' ++ export GNUSTEP_SYSTEM_ROOT GNUSTEP_LOCAL_ROOT GNUSTEP_NETWORK_ROOT ++ '[' no = yes ']' ++ GNUSTEP_FLATTENED=yes ++ export GNUSTEP_FLATTENED ++ GNUSTEP_IS_FLATTENED=yes ++ '[' -z gnu-gnu-gnu ']' ++ '[' '!' no = yes ']' ++ export GNUSTEP_IS_FLATTENED LIBRARY_COMBO ++ '[' -z /usr/share/GNUstep/Makefiles ']' ++ export GNUSTEP_MAKEFILES ++ '[' no = yes ']' ++ '[' -z GNUstep ']' ++ case "$GNUSTEP_USER_DIR" in ++ GNUSTEP_USER_ROOT=/usr/src/GNUstep ++ unset GNUSTEP_USER_DIR ++ export GNUSTEP_USER_ROOT ++ '[' -z '' ']' ++ GNUSTEP_HOST= ++ GNUSTEP_HOST_CPU= ++ GNUSTEP_HOST_VENDOR=alt ++ GNUSTEP_HOST_OS=linux-gnu ++ '[' -z '' ']' +++ pwd ++ tmpdir=/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2 ++ cd /tmp +++ /usr/share/GNUstep/Makefiles/config.guess ++ GNUSTEP_HOST=i686-pc-linux-gnu +++ /usr/share/GNUstep/Makefiles/config.sub i686-pc-linux-gnu ++ GNUSTEP_HOST=i686-pc-linux-gnu ++ cd /usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2 ++ unset tmpdir ++ '[' -z '' ']' +++ /usr/share/GNUstep/Makefiles/cpu.sh i686-pc-linux-gnu ++ GNUSTEP_HOST_CPU=i686 +++ /usr/share/GNUstep/Makefiles/clean_cpu.sh i686 ++ GNUSTEP_HOST_CPU=ix86 ++ '[' -z alt ']' ++ '[' -z linux-gnu ']' ++ '[' '!' no = yes ']' ++ export GNUSTEP_HOST GNUSTEP_HOST_CPU GNUSTEP_HOST_VENDOR GNUSTEP_HOST_OS ++ . /usr/share/GNUstep/Makefiles/filesystem.sh +++ '[' -z /home ']' +++ '[' -z /home ']' +++ '[' -z /home ']' +++ '[' -z /usr/lib/GNUstep/Applications ']' +++ '[' -z /usr/lib/GNUstep/Applications ']' +++ '[' -z /usr/lib/GNUstep/WebApplications ']' +++ '[' -z /usr/bin ']' +++ '[' -z /usr/sbin ']' +++ '[' -z /usr/lib/GNUstep ']' +++ '[' -z /usr/include ']' +++ '[' -z /usr/lib ']' +++ '[' -z /usr/share/doc/GNUstep ']' +++ '[' -z /usr/share/man ']' +++ '[' -z /usr/share/info ']' +++ '[' -z /usr/lib/GNUstep/Applications ']' +++ '[' -z /usr/lib/GNUstep/Applications ']' +++ '[' -z /usr/lib/GNUstep/WebApplications ']' +++ '[' -z /usr/bin ']' +++ '[' -z /usr/sbin ']' +++ '[' -z /usr/lib/GNUstep ']' +++ '[' -z /usr/include ']' +++ '[' -z /usr/lib ']' +++ '[' -z /usr/share/doc/GNUstep ']' +++ '[' -z /usr/share/man ']' +++ '[' -z /usr/share/info ']' +++ '[' -z /usr/lib/GNUstep/Applications ']' +++ '[' -z /usr/lib/GNUstep/Applications ']' +++ '[' -z /usr/lib/GNUstep/WebApplications ']' +++ '[' -z /usr/bin ']' +++ '[' -z /usr/sbin ']' +++ '[' -z /usr/lib/GNUstep ']' +++ '[' -z /usr/include ']' +++ '[' -z /usr/lib ']' +++ '[' -z /usr/share/doc/GNUstep ']' +++ '[' -z /usr/share/man ']' +++ '[' -z /usr/share/info ']' +++ '[' -z GNUstep/Applications ']' +++ '[' -z GNUstep/Applications/Admin ']' +++ '[' -z GNUstep/WebApplications ']' +++ '[' -z GNUstep/Tools ']' +++ '[' -z GNUstep/Tools/Admin ']' +++ '[' -z GNUstep ']' +++ '[' -z GNUstep/Headers ']' +++ '[' -z GNUstep/Libraries ']' +++ '[' -z GNUstep/Documentation ']' +++ '[' -z GNUstep/Documentation/man ']' +++ '[' -z GNUstep/Documentation/info ']' +++ case "${GNUSTEP_USER_DIR_APPS} ${GNUSTEP_USER_DIR_ADMIN_APPS} ${GNUSTEP_USER_DIR_WEB_APPS} ${GNUSTEP_USER_DIR_TOOLS} ${GNUSTEP_USER_DIR_ADMIN_TOOLS} ${GNUSTEP_USER_DIR_LIBRARY} ${GNUSTEP_USER_DIR_HEADERS} ${GNUSTEP_USER_DIR_LIBRARIES} ${GNUSTEP_USER_DIR_DOC} ${GNUSTEP_USER_DIR_DOC_MAN} ${GNUSTEP_USER_DIR_DOC_INFO}" in +++ case "${GNUSTEP_USER_DIR_APPS} ${GNUSTEP_USER_DIR_ADMIN_APPS} ${GNUSTEP_USER_DIR_WEB_APPS} ${GNUSTEP_USER_DIR_TOOLS} ${GNUSTEP_USER_DIR_ADMIN_TOOLS} ${GNUSTEP_USER_DIR_LIBRARY} ${GNUSTEP_USER_DIR_HEADERS} ${GNUSTEP_USER_DIR_LIBRARIES} ${GNUSTEP_USER_DIR_DOC} ${GNUSTEP_USER_DIR_DOC_MAN} ${GNUSTEP_USER_DIR_DOC_INFO}" in +++ case "${GNUSTEP_USER_DIR_APPS} ${GNUSTEP_USER_DIR_ADMIN_APPS} ${GNUSTEP_USER_DIR_WEB_APPS} ${GNUSTEP_USER_DIR_TOOLS} ${GNUSTEP_USER_DIR_ADMIN_TOOLS} ${GNUSTEP_USER_DIR_LIBRARY} ${GNUSTEP_USER_DIR_HEADERS} ${GNUSTEP_USER_DIR_LIBRARIES} ${GNUSTEP_USER_DIR_DOC} ${GNUSTEP_USER_DIR_DOC_MAN} ${GNUSTEP_USER_DIR_DOC_INFO}" in +++ case "$GNUSTEP_USER_DIR_APPS" in +++ GNUSTEP_USER_APPS=/usr/src/GNUstep/Applications +++ unset GNUSTEP_USER_DIR_APPS +++ case "$GNUSTEP_USER_DIR_ADMIN_APPS" in +++ GNUSTEP_USER_ADMIN_APPS=/usr/src/GNUstep/Applications/Admin +++ unset GNUSTEP_USER_DIR_ADMIN_APPS +++ case "$GNUSTEP_USER_DIR_WEB_APPS" in +++ GNUSTEP_USER_WEB_APPS=/usr/src/GNUstep/WebApplications +++ unset GNUSTEP_USER_DIR_WEB_APPS +++ case "$GNUSTEP_USER_DIR_TOOLS" in +++ GNUSTEP_USER_TOOLS=/usr/src/GNUstep/Tools +++ unset GNUSTEP_USER_DIR_TOOLS +++ case "$GNUSTEP_USER_DIR_ADMIN_TOOLS" in +++ GNUSTEP_USER_ADMIN_TOOLS=/usr/src/GNUstep/Tools/Admin +++ unset GNUSTEP_USER_DIR_ADMIN_TOOLS +++ case "$GNUSTEP_USER_DIR_LIBRARY" in +++ GNUSTEP_USER_LIBRARY=/usr/src/GNUstep +++ unset GNUSTEP_USER_DIR_LIBRARY +++ case "$GNUSTEP_USER_DIR_HEADERS" in +++ GNUSTEP_USER_HEADERS=/usr/src/GNUstep/Headers +++ unset GNUSTEP_USER_DIR_HEADERS +++ case "$GNUSTEP_USER_DIR_LIBRARIES" in +++ GNUSTEP_USER_LIBRARIES=/usr/src/GNUstep/Libraries +++ unset GNUSTEP_USER_DIR_LIBRARIES +++ case "$GNUSTEP_USER_DIR_DOC" in +++ GNUSTEP_USER_DOC=/usr/src/GNUstep/Documentation +++ unset GNUSTEP_USER_DIR_DOC +++ case "$GNUSTEP_USER_DIR_DOC_MAN" in +++ GNUSTEP_USER_DOC_MAN=/usr/src/GNUstep/Documentation/man +++ unset GNUSTEP_USER_DIR_DOC_MAN +++ case "$GNUSTEP_USER_DIR_DOC_INFO" in +++ GNUSTEP_USER_DOC_INFO=/usr/src/GNUstep/Documentation/info +++ unset GNUSTEP_USER_DIR_DOC_INFO ++ unset GNUSTEP_HOME ++ fixup_paths=no +++ echo /usr/share/GNUstep/Makefiles +++ sed 's|^[a-zA-Z]:/.*$||' ++ path_check=/usr/share/GNUstep/Makefiles ++ '[' -z /usr/share/GNUstep/Makefiles ']' ++ unset path_check ++ '[' no = yes ']' ++ '[' -z /usr:/usr/src/GNUstep ']' +++ /usr/share/GNUstep/Makefiles/print_unique_pathlist.sh /usr/src/GNUstep/Tools /usr/bin /usr/bin /usr/bin no ++ GNUSTEP_TOOLS_PATHLIST=/usr/bin:/usr/src/GNUstep/Tools ++ for dir in "$GNUSTEP_SYSTEM_ADMIN_TOOLS" "$GNUSTEP_NETWORK_ADMIN_TOOLS" "$GNUSTEP_LOCAL_ADMIN_TOOLS" "$GNUSTEP_USER_ADMIN_TOOLS" ++ '[' -d /usr/sbin -a -w /usr/sbin ']' ++ for dir in "$GNUSTEP_SYSTEM_ADMIN_TOOLS" "$GNUSTEP_NETWORK_ADMIN_TOOLS" "$GNUSTEP_LOCAL_ADMIN_TOOLS" "$GNUSTEP_USER_ADMIN_TOOLS" ++ '[' -d /usr/sbin -a -w /usr/sbin ']' ++ for dir in "$GNUSTEP_SYSTEM_ADMIN_TOOLS" "$GNUSTEP_NETWORK_ADMIN_TOOLS" "$GNUSTEP_LOCAL_ADMIN_TOOLS" "$GNUSTEP_USER_ADMIN_TOOLS" ++ '[' -d /usr/sbin -a -w /usr/sbin ']' ++ for dir in "$GNUSTEP_SYSTEM_ADMIN_TOOLS" "$GNUSTEP_NETWORK_ADMIN_TOOLS" "$GNUSTEP_LOCAL_ADMIN_TOOLS" "$GNUSTEP_USER_ADMIN_TOOLS" ++ '[' -d /usr/src/GNUstep/Tools/Admin -a -w /usr/src/GNUstep/Tools/Admin ']' ++ old_IFS=' ' ++ IFS=: ++ for dir in $GNUSTEP_TOOLS_PATHLIST ++ '[' yes = no ']' ++ path_fragment=/usr/bin ++ '[' -z /usr/src/GNUstep/Tools:/usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games ']' ++ echo :/usr/src/GNUstep/Tools:/usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games: ++ grep -v :/usr/bin: ++ for dir in $GNUSTEP_TOOLS_PATHLIST ++ '[' yes = no ']' ++ path_fragment=/usr/src/GNUstep/Tools ++ '[' -z /usr/src/GNUstep/Tools:/usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games ']' ++ echo :/usr/src/GNUstep/Tools:/usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games: ++ grep -v :/usr/src/GNUstep/Tools: ++ IFS=' ' ++ unset old_IFS ++ unset dir ++ unset path_fragment ++ unset GNUSTEP_TOOLS_PATHLIST ++ export PATH +++ /usr/share/GNUstep/Makefiles/print_unique_pathlist.sh /usr/src/GNUstep/Libraries /usr/lib /usr/lib /usr/lib no ++ GNUSTEP_LIBRARIES_PATHLIST=/usr/lib:/usr/src/GNUstep/Libraries ++ old_IFS=' ' ++ IFS=: ++ for dir in $GNUSTEP_LIBRARIES_PATHLIST ++ '[' yes = yes ']' ++ path_fragment=/usr/lib ++ case "$GNUSTEP_HOST_OS" in ++ '[' -z /usr/src/GNUstep/Libraries:/usr/lib ']' ++ echo :/usr/src/GNUstep/Libraries:/usr/lib: ++ grep -v :/usr/lib: ++ export LD_LIBRARY_PATH ++ for dir in $GNUSTEP_LIBRARIES_PATHLIST ++ '[' yes = yes ']' ++ path_fragment=/usr/src/GNUstep/Libraries ++ case "$GNUSTEP_HOST_OS" in ++ '[' -z /usr/src/GNUstep/Libraries:/usr/lib ']' ++ echo :/usr/src/GNUstep/Libraries:/usr/lib: ++ grep -v :/usr/src/GNUstep/Libraries: ++ export LD_LIBRARY_PATH ++ IFS=' ' ++ unset old_IFS ++ unset dir ++ unset path_fragment ++ unset GNUSTEP_LIBRARIES_PATHLIST ++ case "$GNUSTEP_HOST_OS" in +++ /usr/share/GNUstep/Makefiles/print_unique_pathlist.sh /usr/src/GNUstep /usr/lib/GNUstep /usr/lib/GNUstep /usr/lib/GNUstep no ++ GNUSTEP_LIBRARY_PATHLIST=/usr/lib/GNUstep:/usr/src/GNUstep ++ old_IFS=' ' ++ IFS=: ++ for dir in $GNUSTEP_LIBRARY_PATHLIST ++ path_fragment=/usr/lib/GNUstep/Libraries/Java ++ '[' -z /usr/src/GNUstep/Libraries/Java:/usr/lib/GNUstep/Libraries/Java ']' ++ echo :/usr/src/GNUstep/Libraries/Java:/usr/lib/GNUstep/Libraries/Java: ++ grep -v :/usr/lib/GNUstep/Libraries/Java: ++ path_fragment=/usr/lib/GNUstep/Libraries/Guile ++ '[' -z /usr/src/GNUstep/Libraries/Guile:/usr/lib/GNUstep/Libraries/Guile ']' ++ echo :/usr/src/GNUstep/Libraries/Guile:/usr/lib/GNUstep/Libraries/Guile: ++ grep -v :/usr/lib/GNUstep/Libraries/Guile: ++ for dir in $GNUSTEP_LIBRARY_PATHLIST ++ path_fragment=/usr/src/GNUstep/Libraries/Java ++ '[' -z /usr/src/GNUstep/Libraries/Java:/usr/lib/GNUstep/Libraries/Java ']' ++ echo :/usr/src/GNUstep/Libraries/Java:/usr/lib/GNUstep/Libraries/Java: ++ grep -v :/usr/src/GNUstep/Libraries/Java: ++ path_fragment=/usr/src/GNUstep/Libraries/Guile ++ '[' -z /usr/src/GNUstep/Libraries/Guile:/usr/lib/GNUstep/Libraries/Guile ']' ++ echo :/usr/src/GNUstep/Libraries/Guile:/usr/lib/GNUstep/Libraries/Guile: ++ grep -v :/usr/src/GNUstep/Libraries/Guile: ++ IFS=' ' ++ unset old_IFS ++ unset dir ++ unset path_fragment ++ unset GNUSTEP_LIBRARY_PATHLIST ++ export CLASSPATH ++ export GUILE_LOAD_PATH +++ /usr/share/GNUstep/Makefiles/print_unique_pathlist.sh /usr/src/GNUstep/Documentation/info /usr/share/info /usr/share/info /usr/share/info no ++ GNUSTEP_INFO_PATHLIST=/usr/share/info:/usr/src/GNUstep/Documentation/info ++ old_IFS=' ' ++ IFS=: ++ for dir in $GNUSTEP_INFO_PATHLIST ++ '[' -z /usr/share/info::/usr/src/GNUstep/Documentation/info: ']' ++ echo :/usr/share/info::/usr/src/GNUstep/Documentation/info:: ++ grep -v :/usr/share/info: ++ for dir in $GNUSTEP_INFO_PATHLIST ++ '[' -z /usr/share/info::/usr/src/GNUstep/Documentation/info: ']' ++ echo :/usr/share/info::/usr/src/GNUstep/Documentation/info:: ++ grep -v :/usr/src/GNUstep/Documentation/info: ++ IFS=' ' ++ unset old_IFS ++ unset dir ++ unset GNUSTEP_INFO_PATHLIST ++ export INFOPATH ++ '[' -n '' ']' ++ '[' no = yes ']' ++ unset GNUSTEP_MAKE_STRICT_V2_MODE ++ '[' -z '' ']' ++ unset GNUSTEP_CONFIG_FILE ++ unset GNUSTEP_KEEP_CONFIG_FILE ++ '[' -z '' ']' ++ unset GNUSTEP_USER_CONFIG_FILE ++ unset GNUSTEP_KEEP_USER_CONFIG_FILE ++ unset GNUSTEP_USER_DEFAULTS_DIR ++ unset GNUSTEP_SYSTEM_APPS ++ unset GNUSTEP_SYSTEM_ADMIN_APPS ++ unset GNUSTEP_SYSTEM_WEB_APPS ++ unset GNUSTEP_SYSTEM_TOOLS ++ unset GNUSTEP_SYSTEM_ADMIN_TOOLS ++ unset GNUSTEP_SYSTEM_LIBRARY ++ unset GNUSTEP_SYSTEM_HEADERS ++ unset GNUSTEP_SYSTEM_LIBRARIES ++ unset GNUSTEP_SYSTEM_DOC ++ unset GNUSTEP_SYSTEM_DOC_MAN ++ unset GNUSTEP_SYSTEM_DOC_INFO ++ unset GNUSTEP_NETWORK_APPS ++ unset GNUSTEP_NETWORK_ADMIN_APPS ++ unset GNUSTEP_NETWORK_WEB_APPS ++ unset GNUSTEP_NETWORK_TOOLS ++ unset GNUSTEP_NETWORK_ADMIN_TOOLS ++ unset GNUSTEP_NETWORK_LIBRARY ++ unset GNUSTEP_NETWORK_HEADERS ++ unset GNUSTEP_NETWORK_LIBRARIES ++ unset GNUSTEP_NETWORK_DOC ++ unset GNUSTEP_NETWORK_DOC_MAN ++ unset GNUSTEP_NETWORK_DOC_INFO ++ unset GNUSTEP_LOCAL_APPS ++ unset GNUSTEP_LOCAL_ADMIN_APPS ++ unset GNUSTEP_LOCAL_WEB_APPS ++ unset GNUSTEP_LOCAL_TOOLS ++ unset GNUSTEP_LOCAL_ADMIN_TOOLS ++ unset GNUSTEP_LOCAL_LIBRARY ++ unset GNUSTEP_LOCAL_HEADERS ++ unset GNUSTEP_LOCAL_LIBRARIES ++ unset GNUSTEP_LOCAL_DOC ++ unset GNUSTEP_LOCAL_DOC_MAN ++ unset GNUSTEP_LOCAL_DOC_INFO ++ unset GNUSTEP_USER_APPS ++ unset GNUSTEP_USER_ADMIN_APPS ++ unset GNUSTEP_USER_WEB_APPS ++ unset GNUSTEP_USER_TOOLS ++ unset GNUSTEP_USER_ADMIN_TOOLS ++ unset GNUSTEP_USER_LIBRARY ++ unset GNUSTEP_USER_HEADERS ++ unset GNUSTEP_USER_LIBRARIES ++ unset GNUSTEP_USER_DOC ++ unset GNUSTEP_USER_DOC_MAN ++ unset GNUSTEP_USER_DOC_INFO ++ unset GNUSTEP_SYSTEM_USERS_DIR ++ unset GNUSTEP_LOCAL_USERS_DIR ++ unset GNUSTEP_NETWORK_USERS_DIR ++ '[' -n '' ']' + make 'INSTALL=/bin/install -p' install DESTDIR=/usr/src/tmp/gnustep-BioCocoa-buildroot GNUSTEP_INSTALLATION_DOMAIN=SYSTEM make: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2' This is gnustep-make 2.6.6. Type 'gmake print-gnustep-make-help' for help. make: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2' make: Entering directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2' Making build-headers in subprojects of framework BioCocoa... Making build-headers in subprojects of subproject BCFoundation... Making build-headers for subproject BCAlignment... gmake[3]: Nothing to be done for 'internal-subproject-build-headers'. Making build-headers for subproject BCAnalysis... gmake[3]: Nothing to be done for 'internal-subproject-build-headers'. Making build-headers for subproject BCGeneExpression... gmake[3]: Nothing to be done for 'internal-subproject-build-headers'. Making build-headers for subproject BCGeneticCode... gmake[3]: Nothing to be done for 'internal-subproject-build-headers'. Making build-headers for subproject BCProteinStructure... gmake[3]: Nothing to be done for 'internal-subproject-build-headers'. Making build-headers for subproject BCSequence... gmake[3]: Nothing to be done for 'internal-subproject-build-headers'. Making build-headers for subproject BCSequenceIO... gmake[3]: Nothing to be done for 'internal-subproject-build-headers'. Making build-headers for subproject BCSymbol... gmake[3]: Nothing to be done for 'internal-subproject-build-headers'. Making build-headers for subproject BCTools... gmake[3]: Nothing to be done for 'internal-subproject-build-headers'. Making build-headers for subproject BCUtils... gmake[3]: Nothing to be done for 'internal-subproject-build-headers'. Making build-headers for subproject BCFoundation... gmake[2]: Nothing to be done for 'internal-subproject-build-headers'. Making build-headers for framework BioCocoa... Making all in subprojects of framework BioCocoa... Making all in subprojects of subproject BCFoundation... Making all for subproject BCAlignment... gmake[4]: Nothing to be done for 'internal-subproject-compile'. Making all for subproject BCAnalysis... gmake[4]: Nothing to be done for 'internal-subproject-compile'. Making all for subproject BCGeneExpression... gmake[4]: Nothing to be done for 'internal-subproject-compile'. Making all for subproject BCGeneticCode... gmake[4]: Nothing to be done for 'internal-subproject-compile'. Making all for subproject BCProteinStructure... gmake[4]: Nothing to be done for 'internal-subproject-compile'. Making all for subproject BCSequence... gmake[4]: Nothing to be done for 'internal-subproject-compile'. Making all for subproject BCSequenceIO... gmake[4]: Nothing to be done for 'internal-subproject-compile'. Making all for subproject BCSymbol... gmake[4]: Nothing to be done for 'internal-subproject-compile'. Making all for subproject BCTools... gmake[4]: Nothing to be done for 'internal-subproject-compile'. Making all for subproject BCUtils... gmake[4]: Nothing to be done for 'internal-subproject-compile'. Making all for subproject BCFoundation... gmake[3]: Nothing to be done for 'internal-subproject-compile'. Making all for framework BioCocoa... gmake[2]: Nothing to be done for 'internal-framework-compile'. Copying resources into the framework wrapper... Copying resources from subprojects into the framework wrapper... Making install in subprojects of framework BioCocoa... Making install in subprojects of subproject BCFoundation... Making install for subproject BCAlignment... gmake[3]: Nothing to be done for 'internal-subproject-install'. Making install for subproject BCAnalysis... gmake[3]: Nothing to be done for 'internal-subproject-install'. Making install for subproject BCGeneExpression... gmake[3]: Nothing to be done for 'internal-subproject-install'. Making install for subproject BCGeneticCode... gmake[3]: Nothing to be done for 'internal-subproject-install'. Making install for subproject BCProteinStructure... gmake[3]: Nothing to be done for 'internal-subproject-install'. Making install for subproject BCSequence... gmake[3]: Nothing to be done for 'internal-subproject-install'. Making install for subproject BCSequenceIO... gmake[3]: Nothing to be done for 'internal-subproject-install'. Making install for subproject BCSymbol... gmake[3]: Nothing to be done for 'internal-subproject-install'. Making install for subproject BCTools... gmake[3]: Nothing to be done for 'internal-subproject-install'. Making install for subproject BCUtils... gmake[3]: Nothing to be done for 'internal-subproject-install'. Making install for subproject BCFoundation... gmake[2]: Nothing to be done for 'internal-subproject-install'. Making install for framework BioCocoa... Creating /usr/src/tmp/gnustep-BioCocoa-buildroot//usr/lib/GNUstep/Frameworks... Creating /usr/src/tmp/gnustep-BioCocoa-buildroot//usr/include... Installing framework BioCocoa... Installing headers... make: Leaving directory '/usr/src/RPM/BUILD/gnustep-BioCocoa-2.2.2' + pushd /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib ~/tmp/gnustep-BioCocoa-buildroot/usr/lib ~/RPM/BUILD/gnustep-BioCocoa-2.2.2 + for j in BioCocoa + for i in lib$j.so* + rm -f libBioCocoa.so + mv GNUstep/Frameworks/BioCocoa.framework/Versions/Current/libBioCocoa.so ./ + for k in lib$j.so.*.* + ln -s /usr/lib/libBioCocoa.so.2.2.2 GNUstep/Frameworks/BioCocoa.framework/Versions/Current/libBioCocoa.so + rm GNUstep/Frameworks/BioCocoa.framework/Versions/Current/BioCocoa + ln -s /usr/lib/libBioCocoa.so.2.2.2 GNUstep/Frameworks/BioCocoa.framework/Versions/Current/BioCocoa + for i in lib$j.so* + rm -f libBioCocoa.so.2 + mv GNUstep/Frameworks/BioCocoa.framework/Versions/Current/libBioCocoa.so.2 ./ + for k in lib$j.so.*.* + ln -s /usr/lib/libBioCocoa.so.2.2.2 GNUstep/Frameworks/BioCocoa.framework/Versions/Current/libBioCocoa.so.2 + rm GNUstep/Frameworks/BioCocoa.framework/Versions/Current/BioCocoa + ln -s /usr/lib/libBioCocoa.so.2.2.2 GNUstep/Frameworks/BioCocoa.framework/Versions/Current/BioCocoa + for i in lib$j.so* + rm -f libBioCocoa.so.2.2.2 + mv GNUstep/Frameworks/BioCocoa.framework/Versions/Current/libBioCocoa.so.2.2.2 ./ + for k in lib$j.so.*.* + ln -s /usr/lib/libBioCocoa.so.2.2.2 GNUstep/Frameworks/BioCocoa.framework/Versions/Current/libBioCocoa.so.2.2.2 + rm GNUstep/Frameworks/BioCocoa.framework/Versions/Current/BioCocoa + ln -s /usr/lib/libBioCocoa.so.2.2.2 GNUstep/Frameworks/BioCocoa.framework/Versions/Current/BioCocoa + popd ~/RPM/BUILD/gnustep-BioCocoa-2.2.2 + /usr/lib/rpm/brp-alt Cleaning files in /usr/src/tmp/gnustep-BioCocoa-buildroot (auto) mode of './usr/lib/libBioCocoa.so.2.2.2' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) Verifying and fixing files in /usr/src/tmp/gnustep-BioCocoa-buildroot (binconfig,pkgconfig,libtool,desktop) Checking contents of files in /usr/src/tmp/gnustep-BioCocoa-buildroot/ (default) Compressing files in /usr/src/tmp/gnustep-BioCocoa-buildroot (auto) Adjusting library links in /usr/src/tmp/gnustep-BioCocoa-buildroot ./usr/lib: libBioCocoa.so.2 -> libBioCocoa.so.2.2.2 Verifying ELF objects in /usr/src/tmp/gnustep-BioCocoa-buildroot (arch=normal,fhs=normal,lfs=relaxed,lint=relaxed,rpath=normal,stack=normal,textrel=normal,unresolved=strict) verify-elf: WARNING: ./usr/lib/libBioCocoa.so.2.2.2: uses non-LFS functions: fgetpos fopen fseeko fsetpos ftello Hardlinking identical .pyc and .pyo files Processing files: gnustep-BioCocoa-2.2.2-alt3 Executing(%doc): /bin/sh -e /usr/src/tmp/rpm-tmp.62151 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd gnustep-BioCocoa-2.2.2 + DOCDIR=/usr/src/tmp/gnustep-BioCocoa-buildroot/usr/share/doc/gnustep-BioCocoa-2.2.2 + export DOCDIR + rm -rf /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/share/doc/gnustep-BioCocoa-2.2.2 + /bin/mkdir -p /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/share/doc/gnustep-BioCocoa-2.2.2 + cp -prL ChangeLog Authors.txt Publications.txt Readme.txt license.txt /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/share/doc/gnustep-BioCocoa-2.2.2 + chmod -R go-w /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/share/doc/gnustep-BioCocoa-2.2.2 + chmod -R a+rX /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/share/doc/gnustep-BioCocoa-2.2.2 + exit 0 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.zHidTu find-provides: broken symbolic link /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib/GNUstep/Frameworks/BioCocoa.framework/BioCocoa -> ./Versions/Current/BioCocoa is not going to provide anything find-provides: absolute symbolic link /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib/GNUstep/Frameworks/BioCocoa.framework/Versions/2/BioCocoa -> /usr/lib/libBioCocoa.so.2.2.2 is not going to provide anything find-provides: absolute symbolic link /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib/GNUstep/Frameworks/BioCocoa.framework/Versions/2/libBioCocoa.so -> /usr/lib/libBioCocoa.so.2.2.2 is not going to provide anything find-provides: absolute symbolic link /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib/GNUstep/Frameworks/BioCocoa.framework/Versions/2/libBioCocoa.so.2 -> /usr/lib/libBioCocoa.so.2.2.2 is not going to provide anything find-provides: absolute symbolic link /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib/GNUstep/Frameworks/BioCocoa.framework/Versions/2/libBioCocoa.so.2.2.2 -> /usr/lib/libBioCocoa.so.2.2.2 is not going to provide anything find-provides: broken symbolic link /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib/GNUstep/Frameworks/BioCocoa.framework/libBioCocoa.so -> ./Versions/Current/libBioCocoa.so is not going to provide anything find-provides: running scripts (alternatives,debuginfo,lib,pam,perl,pkgconfig,python,shell) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.7MISKs find-requires: running scripts (cpp,debuginfo,files,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks,systemd-services) Requires: libgnustep-BioCocoa = 2.2.2-alt3, gnustep-back, /usr/lib/libBioCocoa.so.2.2.2 Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.bukc3J Processing files: libgnustep-BioCocoa-2.2.2-alt3 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.SmuvFu find-provides: running scripts (alternatives,debuginfo,lib,pam,perl,pkgconfig,python,shell) lib.prov: /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib/libBioCocoa.so.2: 86 symbols, 17 bpp Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.ngMnun find-requires: running scripts (cpp,debuginfo,files,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks,systemd-services) Provides: libBioCocoa.so.2 = set:kdZiyFAWQFi5YFzHqxdrZHOIBCofiteGdzRQZvrTfe6RZgbDcNmhYw2Z0GjkR7iSUZk4euTMZwfJsGTdjN0l296oruBRgYDGt77V8WPkBT8uLFvQp4PTnoGlTrZmikhNdqLPsrqaDA9AkZbOY9dZ0hKmv35mTnslZ9R3yKhRG2bNZa6M22 Requires: libc.so.6(GLIBC_2.0), libc.so.6(GLIBC_2.1), libc.so.6(GLIBC_2.1.3), libc.so.6(GLIBC_2.2), libc.so.6(GLIBC_2.3), libc.so.6(GLIBC_2.3.4), libc.so.6(GLIBC_2.4), libgnustep-base.so.1.24 >= set:oj2p34SjSbHAMwqPopICD53lKzH8gTFWKApioF4rkAn2cgFixCRBGn3lweTTGVMvOSSoHIZjmhEm1Kgv0Uxyl1TschbKp, libobjc2.so.4 >= set:mjyhn17r8TfASjqM4, rtld(GNU_HASH) Requires(rpmlib): rpmlib(SetVersions) Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.3pCDze Creating libgnustep-BioCocoa-debuginfo package Processing files: libgnustep-BioCocoa-devel-2.2.2-alt3 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.pq7BPE find-provides: running scripts (alternatives,debuginfo,lib,pam,perl,pkgconfig,python,shell) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.EwNlkt find-requires: running scripts (cpp,debuginfo,files,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks,systemd-services) /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib/GNUstep/Frameworks/BioCocoa.framework/Versions/2/Headers/BCFoundation.h:107:9: fatal error: BioCocoa/BCGeneExpressionOmnibus.h: No such file or directory #import ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ compilation terminated. cpp.req: /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib/GNUstep/Frameworks/BioCocoa.framework/Versions/2/Headers/BCFoundation.h: cpp failed, trying c++ mode i586-alt-linux-cpp: error trying to exec 'cc1plus': execvp: No such file or directory cpp.req: WARNING: /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib/GNUstep/Frameworks/BioCocoa.framework/Versions/2/Headers/BCFoundation.h: cpp failed /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib/GNUstep/Frameworks/BioCocoa.framework/Versions/2/Headers/BCPairwiseAlignment.h:33:9: fatal error: BCAlignment.h: No such file or directory #import "BCAlignment.h" ^~~~~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib/GNUstep/Frameworks/BioCocoa.framework/Versions/2/Headers/BCPairwiseAlignment.h: cpp failed /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib/GNUstep/Frameworks/BioCocoa.framework/Versions/2/Headers/BCStringDefinitions.h:36:9: fatal error: BCInternal.h: No such file or directory #import "BCInternal.h" ^~~~~~~~~~~~~~ compilation terminated. cpp.req: WARNING: /usr/src/tmp/gnustep-BioCocoa-buildroot/usr/lib/GNUstep/Frameworks/BioCocoa.framework/Versions/2/Headers/BCStringDefinitions.h: cpp failed Provides: gnustep-BioCocoa-devel = 2.2.2-alt3 Requires: gnustep-BioCocoa = 2.2.2-alt3, libgnustep-BioCocoa = 2.2.2-alt3, /usr/lib/libBioCocoa.so.2, gnustep-base-devel Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.S7V1o5 Processing files: libgnustep-BioCocoa-debuginfo-2.2.2-alt3 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.PphxF2 find-provides: running scripts (debuginfo) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.8BuaQc find-requires: running scripts (debuginfo) Provides: debug(libBioCocoa.so.2) Requires: libgnustep-BioCocoa = 2.2.2-alt3, debug(libc.so.6), debug(libgnustep-base.so.1.24), debug(libobjc2.so.4) Removing 1 extra deps from gnustep-BioCocoa due to dependency on libgnustep-BioCocoa Removing 1 extra deps from libgnustep-BioCocoa-devel due to dependency on libgnustep-BioCocoa Removing 1 extra deps from libgnustep-BioCocoa-devel due to repentancy on gnustep-BioCocoa Wrote: /usr/src/RPM/RPMS/i586/gnustep-BioCocoa-2.2.2-alt3.i586.rpm Wrote: /usr/src/RPM/RPMS/i586/libgnustep-BioCocoa-2.2.2-alt3.i586.rpm Wrote: /usr/src/RPM/RPMS/i586/libgnustep-BioCocoa-devel-2.2.2-alt3.i586.rpm Wrote: /usr/src/RPM/RPMS/i586/libgnustep-BioCocoa-debuginfo-2.2.2-alt3.i586.rpm 33.81user 12.08system 1:06.24elapsed 69%CPU (0avgtext+0avgdata 46344maxresident)k 0inputs+0outputs (0major+2187555minor)pagefaults 0swaps 53.82user 17.02system 1:33.89elapsed 75%CPU (0avgtext+0avgdata 115896maxresident)k 0inputs+0outputs (0major+2685570minor)pagefaults 0swaps --- libgnustep-BioCocoa-2.2.2-alt3.i586.rpm.repo 2014-02-14 00:43:46.000000000 +0000 +++ libgnustep-BioCocoa-2.2.2-alt3.i586.rpm.hasher 2020-05-17 13:06:54.643158066 +0000 @@ -7,9 +7,10 @@ Requires: libc.so.6(GLIBC_2.3) -Requires: libgnustep-base.so.1.24 >= set:qluHxuuPoZfxdDPjB2QIKgkWLAJdiVh1t16M5IG2shQZuFMuyizRJ3aI4rkhuxAVtlwed9yNSZw8B1pzQS5IMQYB8ihvNmTQbD5Tc0 +Requires: libc.so.6(GLIBC_2.3.4) +Requires: libc.so.6(GLIBC_2.4) +Requires: libgnustep-base.so.1.24 >= set:oj2p34SjSbHAMwqPopICD53lKzH8gTFWKApioF4rkAn2cgFixCRBGn3lweTTGVMvOSSoHIZjmhEm1Kgv0Uxyl1TschbKp Requires: rpmlib(SetVersions) -Requires: libobjc2.so.4 >= set:mjGI24FIybqZDZs5UZG23 -Requires: libpthread.so.0 +Requires: libobjc2.so.4 >= set:mjyhn17r8TfASjqM4 Requires: rtld(GNU_HASH) Requires: rpmlib(PayloadIsLzma) -Provides: libBioCocoa.so.2 = set: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 +Provides: libBioCocoa.so.2 = set:kdZiyFAWQFi5YFzHqxdrZHOIBCofiteGdzRQZvrTfe6RZgbDcNmhYw2Z0GjkR7iSUZk4euTMZwfJsGTdjN0l296oruBRgYDGt77V8WPkBT8uLFvQp4PTnoGlTrZmikhNdqLPsrqaDA9AkZbOY9dZ0hKmv35mTnslZ9R3yKhRG2bNZa6M22 Provides: libgnustep-BioCocoa = 2.2.2-alt3 --- libgnustep-BioCocoa-debuginfo-2.2.2-alt3.i586.rpm.repo 2014-02-14 00:43:46.000000000 +0000 +++ libgnustep-BioCocoa-debuginfo-2.2.2-alt3.i586.rpm.hasher 2020-05-17 13:06:54.688157950 +0000 @@ -32,6 +32,4 @@ /usr/src/debug/gnustep-BioCocoa-2.2.2/BCFoundation/BCGeneticCode/BCCodonRNA.m 100644 -/usr/src/debug/gnustep-BioCocoa-2.2.2/BCFoundation/BCGeneticCode/BCGeneticCode.h 100644 /usr/src/debug/gnustep-BioCocoa-2.2.2/BCFoundation/BCGeneticCode/BCGeneticCode.m 100644 /usr/src/debug/gnustep-BioCocoa-2.2.2/BCFoundation/BCInternal.h 100644 -/usr/src/debug/gnustep-BioCocoa-2.2.2/BCFoundation/BCPreferences.h 100644 /usr/src/debug/gnustep-BioCocoa-2.2.2/BCFoundation/BCPreferences.m 100644 @@ -68,2 +66,3 @@ /usr/src/debug/gnustep-BioCocoa-2.2.2/BCFoundation/BCSequenceIO/BCSequenceWriter.m 100644 +/usr/src/debug/gnustep-BioCocoa-2.2.2/BCFoundation/BCStringDefinitions.h 100644 /usr/src/debug/gnustep-BioCocoa-2.2.2/BCFoundation/BCStringDefinitions.m 100644 @@ -112,3 +111,2 @@ Requires: debug(libobjc2.so.4) -Requires: debug(libpthread.so.0) Requires: rpmlib(PayloadIsLzma)