<86>Apr 14 03:20:36 userdel[85226]: delete user 'rooter' <86>Apr 14 03:20:36 groupadd[85644]: group added to /etc/group: name=rooter, GID=597 <86>Apr 14 03:20:36 groupadd[85644]: group added to /etc/gshadow: name=rooter <86>Apr 14 03:20:36 groupadd[85644]: new group: name=rooter, GID=597 <86>Apr 14 03:20:36 useradd[85665]: new user: name=rooter, UID=597, GID=597, home=/root, shell=/bin/bash <86>Apr 14 03:20:36 userdel[85796]: delete user 'builder' <86>Apr 14 03:20:36 userdel[85796]: removed group 'builder' owned by 'builder' <86>Apr 14 03:20:36 userdel[85796]: removed shadow group 'builder' owned by 'builder' <86>Apr 14 03:20:36 groupadd[85877]: group added to /etc/group: name=builder, GID=598 <86>Apr 14 03:20:36 groupadd[85877]: group added to /etc/gshadow: name=builder <86>Apr 14 03:20:36 groupadd[85877]: new group: name=builder, GID=598 <86>Apr 14 03:20:36 useradd[85912]: new user: name=builder, UID=598, GID=598, home=/usr/src, shell=/bin/bash <13>Apr 14 03:20:48 rpmi: perl-Encode-2.83-alt1 1459157776 installed <13>Apr 14 03:20:48 rpmi: ca-certificates-2016.02.25-alt1 1462368370 installed <13>Apr 14 03:20:48 rpmi: libcrypto10-1.0.2n-alt0.M80P.1 1512766129 installed <13>Apr 14 03:20:48 rpmi: libpng15-1.5.28-alt1 1484572014 installed <13>Apr 14 03:20:48 rpmi: libexpat-2.2.4-alt0.M80P.1 1503871120 installed <13>Apr 14 03:20:48 rpmi: perl-HTTP-Date-6.02-alt1 1348645274 installed <13>Apr 14 03:20:48 rpmi: libsqlite3-3.15.2-alt1 1480432212 installed <13>Apr 14 03:20:48 rpmi: xorg-xproto-devel-7.0.28-alt1 1448272470 installed <13>Apr 14 03:20:48 rpmi: libwayland-client-1.14.0-alt0.M80P.1 1502720500 installed <13>Apr 14 03:20:48 rpmi: perl-XML-NamespaceSupport-1.11-alt3 1322003535 installed <13>Apr 14 03:20:48 rpmi: libjpeg-2:1.3.1-alt0.1 1388074033 installed <13>Apr 14 03:20:48 rpmi: libtasn1-4.9-alt1 1469555628 installed <13>Apr 14 03:20:48 rpmi: libidn2-2.0.4-alt3.M80P.1 1520307194 installed <13>Apr 14 03:20:48 rpmi: libtcl-8.5.9-alt2 1351878901 installed <13>Apr 14 03:20:48 rpmi: tcl-8.5.9-alt2 1351878901 installed <13>Apr 14 03:20:48 rpmi: libnumpy-1:1.12.1-alt0.M80P.1 1496160663 installed <13>Apr 14 03:20:49 rpmi: libopenblas-0.2.14-alt1.git20150324 1433158855 installed <13>Apr 14 03:20:49 rpmi: liblcms2-2.8-alt1 1471601528 installed <13>Apr 14 03:20:49 rpmi: libICE-1.0.9-alt1 1409902719 installed <13>Apr 14 03:20:49 rpmi: libwayland-server-1.14.0-alt0.M80P.1 1502720500 installed <13>Apr 14 03:20:49 rpmi: perl-LWP-MediaTypes-6.02-alt1 1329754558 installed <13>Apr 14 03:20:49 rpmi: perl-Compress-Raw-Zlib-2.069-alt1.1 1448470036 installed <13>Apr 14 03:20:49 rpmi: perl-libnet-1:3.08-alt1 1458419902 installed <13>Apr 14 03:20:49 rpmi: perl-URI-1.71-alt1 1455181348 installed <13>Apr 14 03:20:49 rpmi: perl-XML-SAX-Base-1.08-alt1 1317871344 installed <13>Apr 14 03:20:49 rpmi: libnettle6-3.4.1-alt1 p8.217493.100 1544204548 installed <13>Apr 14 03:20:49 rpmi: libhogweed4-3.4.1-alt1 p8.217493.100 1544204548 installed <13>Apr 14 03:20:49 rpmi: perl-WWW-RobotRules-6.02-alt1 1329756211 installed <13>Apr 14 03:20:49 rpmi: libSM-1.2.2-alt1 1391072686 installed <13>Apr 14 03:20:49 rpmi: libjasper-1.900.1-alt3 1391718482 installed <13>Apr 14 03:20:49 rpmi: libtiff5-4.0.3-alt1 1348347498 installed <13>Apr 14 03:20:49 rpmi: libwayland-cursor-1.14.0-alt0.M80P.1 1502720500 installed <13>Apr 14 03:20:49 rpmi: perl-File-Listing-6.04-alt1 1329758996 installed <13>Apr 14 03:20:49 rpmi: perl-Encode-Locale-1.05-alt1 1444608613 installed <13>Apr 14 03:20:49 rpmi: perl-IO-HTML-1.001-alt1 1404821752 installed <13>Apr 14 03:20:49 rpmi: rpm-build-tcl-0.4-alt2 1445508295 installed <13>Apr 14 03:20:49 rpmi: tcl-devel-8.5.9-alt2 1351878901 installed <13>Apr 14 03:20:49 rpmi: python-module-OpenGL_accelerate-3.1.0-alt2.1.1 1459657995 installed <13>Apr 14 03:20:49 rpmi: zlib-devel-1.2.8-alt1 1371079009 installed <13>Apr 14 03:20:49 rpmi: libxapian-1.2.23-alt1 1459318465 installed <13>Apr 14 03:20:49 rpmi: python-module-xapian-1.2.23-alt1.M80P.1 1503464748 installed <13>Apr 14 03:20:49 rpmi: python-module-google-0.4.0-alt2.1 1457968526 installed <13>Apr 14 03:20:49 rpmi: python-module-sphinx_rtd_theme-0.1.8-alt1.git20150730.1 1457859644 installed <13>Apr 14 03:20:49 rpmi: python-sphinx-objects.inv-2.3.6.20160413-alt1 1460595508 installed <13>Apr 14 03:20:49 rpmi: python-module-z3c-3.0.0-alt2.a2.dev0.git20130313.1.1.1 1460417103 installed <13>Apr 14 03:20:49 rpmi: python-module-pycares-0.6.3-alt1.1.1 1459598195 installed <13>Apr 14 03:20:49 rpmi: python-module-certifi-2015.04.28-alt1.1 1457893771 installed <13>Apr 14 03:20:49 rpmi: pytz-zoneinfo-1:2015.4-alt1.1.1 1460413776 installed <13>Apr 14 03:20:49 rpmi: libxblas-1.0.248-alt1 1322010716 installed <13>Apr 14 03:20:49 rpmi: libxkbcommon-0.7.2-alt0.M80P.1 1503524837 installed <13>Apr 14 03:20:49 rpmi: libgudev-1:231-alt0.M80P.1 1487052830 installed <13>Apr 14 03:20:49 rpmi: udev-rules-1:237-alt2.M80P.6 p8+221965.100.2.1 1550786259 installed <13>Apr 14 03:20:49 rpmi: libquadmath0-5.3.1-alt3.M80P.1 p8+225520.100.3.1 1553688800 installed <13>Apr 14 03:20:49 rpmi: libgfortran3-5.3.1-alt3.M80P.1 p8+225520.100.3.1 1553688800 installed <13>Apr 14 03:20:49 rpmi: liblapack-1:3.5.0-alt1 1401382194 installed <13>Apr 14 03:20:49 rpmi: libepoxy-1.4.3-alt0.M80P.1 1498727071 installed <13>Apr 14 03:20:49 rpmi: libdatrie-0.2.8-alt1_5 1410185969 installed <13>Apr 14 03:20:49 rpmi: libthai-0.1.24-alt1_1 1459282110 installed <13>Apr 14 03:20:49 rpmi: publicsuffix-list-dafsa-20190329-alt1 p8+226349.100.1.1 1554128046 installed <13>Apr 14 03:20:49 rpmi: libpsl-0.18.0-alt0.M80P.1 1502785107 installed <13>Apr 14 03:20:49 rpmi: libnghttp2-1.8.0-alt1 1456818805 installed <13>Apr 14 03:20:49 rpmi: libusb-1.0.21-alt0.M80P.1 1485147102 installed <13>Apr 14 03:20:49 rpmi: libpixman-3:0.32.8-alt1 1447610691 installed <13>Apr 14 03:20:49 rpmi: libbrotlicommon0-1.0.4-alt0.M80P.1 1528205024 installed <13>Apr 14 03:20:49 rpmi: libbrotlidec0-1.0.4-alt0.M80P.1 1528205024 installed <13>Apr 14 03:20:49 rpmi: libgraphite2-1.3.10-alt0.M80P.1 1496411360 installed <13>Apr 14 03:20:49 rpmi: xorg-kbproto-devel-1.0.6-alt1 1332531883 installed <13>Apr 14 03:20:49 rpmi: libxshmfence-1.2-alt1 1420972191 installed <13>Apr 14 03:20:49 rpmi: libpciaccess-1:0.13.4-alt1 1431681688 installed <13>Apr 14 03:20:49 rpmi: libdrm-1:2.4.89-alt1.M80P.1 1516609380 installed <13>Apr 14 03:20:49 rpmi: libgbm-4:18.0.5-alt1.M80P.1 p8+226404.100.1.1 1554206332 installed <13>Apr 14 03:20:49 rpmi: perl-IO-Socket-IP-0.37-alt1 1444921335 installed <13>Apr 14 03:20:49 rpmi: perl-Compress-Raw-Bzip2-2.069-alt1.1 1448470068 installed <13>Apr 14 03:20:49 rpmi: perl-IO-Compress-2.069-alt1 1444618007 installed <13>Apr 14 03:20:49 rpmi: perl-HTTP-Message-6.11-alt1 1444616672 installed <13>Apr 14 03:20:49 rpmi: perl-HTTP-Cookies-6.01-alt1 1329759964 installed <13>Apr 14 03:20:49 rpmi: perl-HTTP-Negotiate-6.01-alt1 1329760563 installed <13>Apr 14 03:20:49 rpmi: perl-Net-HTTP-6.09-alt1 1432310023 installed <13>Apr 14 03:20:49 rpmi: perl-HTML-Tagset-3.20-alt2 1317725093 installed <13>Apr 14 03:20:49 rpmi: perl-HTML-Parser-3.72-alt1 1455170565 installed <13>Apr 14 03:20:49 rpmi: perl-libwww-6.15-alt1 1449505512 installed <13>Apr 14 03:20:50 rpmi: libgdk-pixbuf-locales-2.36.11-alt0.M80P.1 1507198237 installed <13>Apr 14 03:20:50 rpmi: gtk+3-themes-incompatible-3.20-alt3 1461944560 installed <13>Apr 14 03:20:50 rpmi: libproxy-0.4.14-alt0.M80P.1 1491211278 installed <13>Apr 14 03:20:50 rpmi: libnspr-1:4.20-alt1 p8.216526.40 1542382588 installed <13>Apr 14 03:20:50 rpmi: libnss-3.40.0-alt0.M80P.1 p8.216526.44 1542814585 installed <13>Apr 14 03:20:50 rpmi: gcc-c++-common-1.4.20-alt1 1432315196 installed <13>Apr 14 03:20:50 rpmi: libstdc++5-devel-5.3.1-alt3.M80P.1 p8+225520.100.3.1 1553688800 installed <13>Apr 14 03:20:50 rpmi: libatk-locales-2.24.0-alt0.M80P.1 1504535386 installed <13>Apr 14 03:20:50 rpmi: libatk-2.24.0-alt0.M80P.1 1504535253 installed <13>Apr 14 03:20:50 rpmi: rpm-build-xdg-0.2-alt1 1250461503 installed <13>Apr 14 03:20:50 rpmi: shared-mime-info-1.9-alt0.M80P.1 1506021412 installed <13>Apr 14 03:20:50 rpmi: gsettings-desktop-schemas-data-3.24.1-alt0.M80P.1 1504768054 installed <13>Apr 14 03:20:50 rpmi: liblz4-1:1.7.5-alt1 1488766699 installed <13>Apr 14 03:20:50 rpmi: libgpg-error-1.31-alt1.M80P.1 1529024730 installed <13>Apr 14 03:20:50 rpmi: libgcrypt20-1.8.3-alt4 p8+219793.200.6.1 1551112986 installed <13>Apr 14 03:20:50 rpmi: libsystemd-1:237-alt2.M80P.6 p8+221965.100.2.1 1550786217 installed <13>Apr 14 03:20:50 rpmi: libdbus-1.10.24-alt4.M80P.1 1518773282 installed <13>Apr 14 03:20:50 rpmi: libavahi-0.6.31-alt7.M80P.1 1526318593 installed <13>Apr 14 03:20:50 rpmi: libxslt-1.1.28-alt4 1448210404 installed <13>Apr 14 03:20:50 rpmi: libX11-locales-3:1.6.3-alt1 1431956885 installed <13>Apr 14 03:20:50 rpmi: libXdmcp-1.1.1-alt1 1334617699 installed <13>Apr 14 03:20:50 rpmi: libXau-1.0.8-alt1 1369565807 installed <13>Apr 14 03:20:50 rpmi: libxcb-1.12-alt2 p8.218219.300 1545313310 installed <13>Apr 14 03:20:51 rpmi: libX11-3:1.6.3-alt1 1431956911 installed <13>Apr 14 03:20:51 rpmi: libXext-1.3.3-alt1 1409902932 installed <13>Apr 14 03:20:51 rpmi: libXrender-0.9.8-alt1 1371312110 installed <13>Apr 14 03:20:51 rpmi: libXfixes-5.0.1-alt1 1369809606 installed <13>Apr 14 03:20:51 rpmi: libXi-1.7.9-alt1.M80P.1 1515766146 installed <13>Apr 14 03:20:51 rpmi: libat-spi2-core-2.24.1-alt0.M80P.1 1504536015 installed <13>Apr 14 03:20:51 rpmi: libXdamage-1.1.3-alt4 1297162596 installed <13>Apr 14 03:20:51 rpmi: libXcursor-1.1.15-alt1.M80P.1 1512373713 installed <13>Apr 14 03:20:51 rpmi: libXrandr-1.5.0-alt1 1431936188 installed <13>Apr 14 03:20:51 rpmi: libXtst-1.2.2-alt1 1369984880 installed <13>Apr 14 03:20:51 rpmi: libXxf86vm-1.1.3-alt1 1369984824 installed <13>Apr 14 03:20:51 rpmi: libGL-4:18.0.5-alt1.M80P.1 p8+226404.100.1.1 1554206332 installed <13>Apr 14 03:20:51 rpmi: libGLU-4:9.0.0-alt1 1347643776 installed <13>Apr 14 03:20:51 rpmi: libEGL-4:18.0.5-alt1.M80P.1 p8+226404.100.1.1 1554206332 installed <13>Apr 14 03:20:51 rpmi: libGLEW2.0-2.0.0-alt1 1470176354 installed <13>Apr 14 03:20:51 rpmi: libwayland-egl-4:18.0.5-alt1.M80P.1 p8+226404.100.1.1 1554206332 installed <13>Apr 14 03:20:51 rpmi: libXinerama-1.1.3-alt1 1369984571 installed <13>Apr 14 03:20:51 rpmi: libXt-1.1.4-alt1 1369984716 installed <13>Apr 14 03:20:51 rpmi: libXmu-1.1.2-alt1 1391072528 installed <13>Apr 14 03:20:51 rpmi: libGLUT-5:8.0.1-alt2 1329813531 installed <13>Apr 14 03:20:51 rpmi: libXcomposite-0.4.3-alt3 1297306939 installed <13>Apr 14 03:20:52 rpmi: libxcb-devel-1.12-alt2 p8.218219.300 1545313310 installed <13>Apr 14 03:20:53 rpmi: libX11-devel-3:1.6.3-alt1 1431956911 installed <13>Apr 14 03:20:53 rpmi: libGL-devel-4:18.0.5-alt1.M80P.1 p8+226404.100.1.1 1554206332 installed <13>Apr 14 03:20:53 rpmi: libGLU-devel-4:9.0.0-alt1 1347643776 installed <13>Apr 14 03:20:53 rpmi: libtinfo-devel-5.9-alt8 1456756459 installed <13>Apr 14 03:20:53 rpmi: libncurses-devel-5.9-alt8 1456756459 installed <13>Apr 14 03:20:53 rpmi: python-modules-curses-2.7.11-alt6.M80P.1 1527682470 installed <13>Apr 14 03:20:53 rpmi: libverto-0.2.6-alt1_6 1455633234 installed <13>Apr 14 03:20:53 rpmi: libkeyutils-1.5.10-alt0.M80P.2 p8+216694.100.6.1 1547827915 installed <13>Apr 14 03:20:53 rpmi: libcom_err-1.42.13-alt2 1449075846 installed <13>Apr 14 03:20:53 rpmi: libgdbm-1.8.3-alt10 1454943313 installed <13>Apr 14 03:20:53 rpmi: libGLEW-devel-2.0.0-alt1 1470176354 installed <13>Apr 14 03:20:53 rpmi: libGLUT-devel-5:8.0.1-alt2 1329813531 installed <13>Apr 14 03:20:54 rpmi: gcc5-c++-5.3.1-alt3.M80P.1 p8+225520.100.3.1 1553688800 installed <13>Apr 14 03:20:54 rpmi: libpng-devel-1.5.28-alt1 1484572014 installed <13>Apr 14 03:20:54 rpmi: libgio-2.52.3-alt0.M80P.1 1504533271 installed <13>Apr 14 03:20:54 rpmi: gobject-introspection-1.52.1-alt0.M80P.1 1504533480 installed <86>Apr 14 03:20:54 groupadd[119083]: group added to /etc/group: name=_keytab, GID=499 <86>Apr 14 03:20:54 groupadd[119083]: group added to /etc/gshadow: name=_keytab <86>Apr 14 03:20:54 groupadd[119083]: new group: name=_keytab, GID=499 <13>Apr 14 03:20:54 rpmi: libkrb5-1.14.6-alt1.M80P.1 1525355673 installed <13>Apr 14 03:20:54 rpmi: libssl10-1.0.2n-alt0.M80P.1 1512766129 installed <13>Apr 14 03:20:54 rpmi: libgdk-pixbuf-2.36.11-alt0.M80P.1 1507198160 installed <13>Apr 14 03:20:54 rpmi: libp11-kit-0.23.8-alt1.M80P.1 1504877563 installed <86>Apr 14 03:20:54 groupadd[119720]: group added to /etc/group: name=messagebus, GID=498 <86>Apr 14 03:20:54 groupadd[119720]: group added to /etc/gshadow: name=messagebus <86>Apr 14 03:20:54 groupadd[119720]: new group: name=messagebus, GID=498 <86>Apr 14 03:20:54 useradd[119733]: new user: name=messagebus, UID=499, GID=498, home=/run/dbus, shell=/dev/null <13>Apr 14 03:20:54 rpmi: dbus-1.10.24-alt4.M80P.1 1518773282 installed <13>Apr 14 03:20:54 rpmi: gobject-introspection-x11-1.52.1-alt0.M80P.1 1504533480 installed <13>Apr 14 03:20:54 rpmi: gsettings-desktop-schemas-3.24.1-alt0.M80P.1 1504768052 installed <13>Apr 14 03:20:54 rpmi: libgusb-0.2.11-alt0.M80P.1 1503526571 installed <13>Apr 14 03:20:54 rpmi: libcolord-1.3.5-alt0.M80P.1 1488875506 installed <13>Apr 14 03:20:54 rpmi: libharfbuzz-1.6.3-alt0.M80P.1 1509918814 installed <13>Apr 14 03:20:54 rpmi: libfreetype-2.8-alt0.M80P.3 1505462817 installed <13>Apr 14 03:20:54 rpmi: fontconfig-2.12.6-alt1.M80P.1 1506008910 installed Updating fonts cache: <29>Apr 14 03:20:55 fontconfig: Updating fonts cache: succeeded [ DONE ] <13>Apr 14 03:20:55 rpmi: libcairo-1:1.14.4-alt1 1447005495 installed <13>Apr 14 03:20:55 rpmi: libcairo-gobject-1:1.14.4-alt1 1447005495 installed <13>Apr 14 03:20:55 rpmi: libXft-2.3.2-alt1 1409902650 installed <13>Apr 14 03:20:55 rpmi: libpango-1.40.14-alt0.M80P.1 1510824230 installed <13>Apr 14 03:20:55 rpmi: perl-XML-SAX-0.99-alt2 1384805188 installed <13>Apr 14 03:20:55 rpmi: perl-XML-Simple-2.22-alt1 1449506808 installed <13>Apr 14 03:20:55 rpmi: icon-naming-utils-0.8.90-alt1 1236573102 installed <13>Apr 14 03:20:57 rpmi: icon-theme-adwaita-3.24.0-alt0.M80P.1 1504567873 installed <13>Apr 14 03:20:57 rpmi: libpango-gir-1.40.14-alt0.M80P.1 1510824230 installed <13>Apr 14 03:20:57 rpmi: libtk-8.5.9-alt3 1308047279 installed <13>Apr 14 03:20:57 rpmi: tk-8.5.9-alt3 1308047279 installed <13>Apr 14 03:20:57 rpmi: dbus-tools-gui-1.10.24-alt4.M80P.1 1518773282 installed <13>Apr 14 03:20:57 rpmi: at-spi2-core-2.24.1-alt0.M80P.1 1504536015 installed <13>Apr 14 03:20:57 rpmi: at-spi2-atk-2.24.1-alt0.M80P.1 1504536077 installed <13>Apr 14 03:20:57 rpmi: libgnutls30-3.6.7-alt0.M80P.1 p8+225835.100.2.1 1554226496 installed <13>Apr 14 03:20:57 rpmi: glib-networking-2.50.0-alt1.M80P.1 1503575484 installed <13>Apr 14 03:20:57 rpmi: libsoup-2.62.2-alt0.M80P.1 1528058397 installed <13>Apr 14 03:20:57 rpmi: libsoup-gnome-2.62.2-alt0.M80P.1 1528058397 installed <13>Apr 14 03:20:57 rpmi: librest-0.8.1-alt0.M80P.1 1509920808 installed <13>Apr 14 03:20:57 rpmi: gtk-update-icon-cache-2.24.31-alt1 1473461609 installed <13>Apr 14 03:20:57 rpmi: libgdk-pixbuf-gir-2.36.11-alt0.M80P.1 1507198160 installed <13>Apr 14 03:20:57 rpmi: libcups-2.1.0-alt2.M80P.4 p8+223280.100.1.1 1551372192 installed <86>Apr 14 03:20:57 groupadd[125481]: group added to /etc/group: name=sasl, GID=497 <86>Apr 14 03:20:57 groupadd[125481]: group added to /etc/gshadow: name=sasl <86>Apr 14 03:20:57 groupadd[125481]: new group: name=sasl, GID=497 <13>Apr 14 03:20:57 rpmi: libsasl2-3-2.1.26-alt7 1479477445 installed <13>Apr 14 03:20:57 rpmi: libldap-2.4.45-alt1.M80P.1 1513980376 installed <13>Apr 14 03:20:57 rpmi: libcurl-7.64.0-alt1 p8+220788.100.1.1 1549495393 installed <13>Apr 14 03:20:57 rpmi: libatk-gir-2.24.0-alt0.M80P.1 1504535253 installed <13>Apr 14 03:20:57 rpmi: libdconf-0.26.1-alt0.M80P.1 1507197872 installed <13>Apr 14 03:20:57 rpmi: dconf-0.26.1-alt0.M80P.1 1507197872 installed <13>Apr 14 03:20:57 rpmi: libgtk+3-schemas-3.22.26-alt0.M80P.1 1510825424 installed <13>Apr 14 03:20:57 rpmi: libpolkit-0.113-alt2 1469643478 installed <86>Apr 14 03:20:57 groupadd[125612]: group added to /etc/group: name=colord, GID=496 <86>Apr 14 03:20:57 groupadd[125612]: group added to /etc/gshadow: name=colord <86>Apr 14 03:20:57 groupadd[125612]: new group: name=colord, GID=496 <86>Apr 14 03:20:57 useradd[125633]: new user: name=colord, UID=498, GID=496, home=/var/colord, shell=/dev/null <13>Apr 14 03:20:57 rpmi: colord-1.3.5-alt0.M80P.1 1488875506 installed <13>Apr 14 03:20:57 rpmi: libjson-glib-1.2.8-alt0.M80P.1 1489956779 installed <13>Apr 14 03:20:58 rpmi: libgtk+3-3.22.26-alt0.M80P.1 1510825302 installed <13>Apr 14 03:20:58 rpmi: libgtk+3-gir-3.22.26-alt0.M80P.1 1510825302 installed <13>Apr 14 03:20:58 rpmi: perl-XML-LibXML-2.0124-alt1 1458750523 installed <13>Apr 14 03:20:58 rpmi: libp11-kit-trust-0.23.8-alt1.M80P.1 1504877563 installed <13>Apr 14 03:20:58 rpmi: dbus-tools-1.10.24-alt4.M80P.1 1518773282 installed <13>Apr 14 03:20:58 rpmi: tk-devel-8.5.9-alt3 1308047279 installed <13>Apr 14 03:20:59 rpmi: libfreetype-devel-2.8-alt0.M80P.3 1505462817 installed <13>Apr 14 03:20:59 rpmi: python-modules-compiler-2.7.11-alt6.M80P.1 1527682470 installed <13>Apr 14 03:20:59 rpmi: python-modules-email-2.7.11-alt6.M80P.1 1527682470 installed <13>Apr 14 03:20:59 rpmi: python-modules-unittest-2.7.11-alt6.M80P.1 1527682470 installed <13>Apr 14 03:20:59 rpmi: python-modules-2.7.11-alt6.M80P.1 1527682470 installed <13>Apr 14 03:20:59 rpmi: python-modules-xml-2.7.11-alt6.M80P.1 1527682470 installed <13>Apr 14 03:20:59 rpmi: python-modules-json-2.7.11-alt6.M80P.1 1527682470 installed <13>Apr 14 03:20:59 rpmi: python-modules-ctypes-2.7.11-alt6.M80P.1 1527682470 installed <13>Apr 14 03:20:59 rpmi: python-module-six-1.10.0-alt7 1496087616 installed <13>Apr 14 03:20:59 rpmi: python-modules-encodings-2.7.11-alt6.M80P.1 1527682470 installed <13>Apr 14 03:20:59 rpmi: python-modules-multiprocessing-2.7.11-alt6.M80P.1 1527682470 installed <13>Apr 14 03:20:59 rpmi: python-modules-logging-2.7.11-alt6.M80P.1 1527682470 installed <13>Apr 14 03:20:59 rpmi: python-module-simplejson-3.15.0-alt1.M80P.1 1528995430 installed <13>Apr 14 03:20:59 rpmi: python-tools-2to3-2.7.11-alt6.M80P.1 1527682470 installed <13>Apr 14 03:20:59 rpmi: python-module-whoosh-2.7.0-alt1.hg20150805.1.1 1457859779 installed <13>Apr 14 03:20:59 rpmi: python-module-cycler-0.10.0-alt1 1493854024 installed <13>Apr 14 03:20:59 rpmi: python-module-webencodings-0.5.1-alt0.M80P.1 1507185481 installed <13>Apr 14 03:20:59 rpmi: python-modules-hotshot-2.7.11-alt6.M80P.1 1527682470 installed <13>Apr 14 03:20:59 rpmi: python-modules-bsddb-2.7.11-alt6.M80P.1 1527682470 installed <13>Apr 14 03:20:59 rpmi: python-2.7.11-alt6.M80P.1 1527682470 installed <13>Apr 14 03:20:59 rpmi: python-strict-2.7.11-alt6.M80P.1 1527682534 installed <13>Apr 14 03:20:59 rpmi: python-dev-2.7.11-alt6.M80P.1 1527682470 installed <13>Apr 14 03:20:59 rpmi: python-module-dateutil-2.6.0-alt0.M80P.1 1507185893 installed <13>Apr 14 03:20:59 rpmi: python-module-pyparsing-2.0.3-alt1 1423469752 installed <13>Apr 14 03:20:59 rpmi: python-module-pycurl-7.19.5.3-alt1.1.1 1459598459 installed <13>Apr 14 03:20:59 rpmi: python-module-zc-1.0.0-alt6.2 1458024144 installed <13>Apr 14 03:20:59 rpmi: python-module-pycairo-1.13.3-alt0.M80P.1 1504561359 installed <13>Apr 14 03:20:59 rpmi: python-module-pygobject3-3.24.1-alt1.M80P.1 1504561842 installed <13>Apr 14 03:20:59 rpmi: python-module-pytz-1:2015.4-alt1.1.1 1460413776 installed <13>Apr 14 03:20:59 rpmi: python-module-PyStemmer-1.0.1-alt1.2.1 1321387369 installed <13>Apr 14 03:20:59 rpmi: python-module-snowballstemmer-1.2.0-alt2.1 1457859319 installed <13>Apr 14 03:20:59 rpmi: python-module-functools32-3.2.3.2-alt1.git20150711 1438148996 installed <13>Apr 14 03:20:59 rpmi: python-module-backports-3.5.0.1-alt0.M80P.1 1525453027 installed <13>Apr 14 03:20:59 rpmi: python-module-backports.ssl_match_hostname-3.5.0.1-alt0.M80P.1 1525453027 installed <13>Apr 14 03:20:59 rpmi: python-modules-wsgiref-2.7.11-alt6.M80P.1 1527682470 installed <13>Apr 14 03:20:59 rpmi: python-module-py-1.4.34-alt0.M80P.1 1503506764 installed <13>Apr 14 03:20:59 rpmi: python-module-markupsafe-0.23-alt1.2.1 1459593526 installed <13>Apr 14 03:20:59 rpmi: python-modules-sqlite3-2.7.11-alt6.M80P.1 1527682470 installed <13>Apr 14 03:21:00 rpmi: python-module-SQLAlchemy-1.2.15-alt1 p8+223214.600.2.1 1551354313 installed <13>Apr 14 03:21:00 rpmi: python-module-OpenGL-3.1.0-alt2.1.1 1460391917 installed <13>Apr 14 03:21:00 rpmi: python-module-setuptools-1:18.5-alt0.M80P.1 1497527461 installed <13>Apr 14 03:21:00 rpmi: python-module-numpy-1:1.12.1-alt0.M80P.1 1496160663 installed <13>Apr 14 03:21:00 rpmi: python-module-jinja2-2.9-alt1.dev.git20150726.1.1.1 1460400640 installed <13>Apr 14 03:21:00 rpmi: python-module-zope-3.3.0-alt8.4 1458261152 installed <13>Apr 14 03:21:00 rpmi: python-module-tornado-4.2.1-alt2.M80P.1 1496088637 installed <13>Apr 14 03:21:01 rpmi: python-module-babel-1:2.3.4-alt0.M80P.1 1480881327 installed <13>Apr 14 03:21:01 rpmi: scons-3.0.1-alt0.M80P.1 p8.217801.200 1547224686 installed <13>Apr 14 03:21:01 rpmi: python-module-jinja2-tests-2.9-alt1.dev.git20150726.1.1.1 1460400640 installed <13>Apr 14 03:21:01 rpmi: python-module-pytest-3.2.1-alt0.M80P.1 1503499784 installed <13>Apr 14 03:21:01 rpmi: python-module-numpy-testing-1:1.12.1-alt0.M80P.1 1496160663 installed <13>Apr 14 03:21:01 rpmi: python-module-zope.interface-4.1.3-alt1.dev0.git20150601.4 1459629874 installed <13>Apr 14 03:21:01 rpmi: python-module-cssselect-0.9.1-alt1.1 1457858257 installed <13>Apr 14 03:21:01 rpmi: python-module-lxml-4.0.0-alt0.M80P.1 1507163741 installed <13>Apr 14 03:21:02 rpmi: python-module-docutils-0.13-alt4.git20150716.1.1 1460400317 installed <13>Apr 14 03:21:03 rpmi: python-module-matplotlib-2.0.0-alt3.M80P.1 1498628280 installed <13>Apr 14 03:21:03 rpmi: python-module-matplotlib-gtk3-2.0.0-alt3.M80P.1 1498628280 installed <13>Apr 14 03:21:03 rpmi: python-module-matplotlib-cairo-2.0.0-alt3.M80P.1 1498628280 installed <13>Apr 14 03:21:03 rpmi: python-module-html5lib-1:0.999999999-alt1.M80P.2 1507185603 installed <13>Apr 14 03:21:03 rpmi: python-module-Pygments-2.2.0-alt1.M80P.2 p8.214223.100 1538848792 installed <13>Apr 14 03:21:03 rpmi: python-module-alabaster-0.7.6-alt1.git20150703.1 1457857919 installed <13>Apr 14 03:21:04 rpmi: python-module-sphinx-1:1.4-alt8.a0.git20150813 1460726255 installed <13>Apr 14 03:21:04 rpmi: python-module-numpydoc-1:0.6-alt1.dev.git20150712 1440938301 installed <13>Apr 14 03:21:04 rpmi: libnumpy-devel-1:1.12.1-alt0.M80P.1 1496160663 installed Installing pymol-1.7.2.1-alt2.svn20140819.qa1.src.rpm Building target platforms: x86_64 Building for target x86_64 Executing(%prep): /bin/sh -e /usr/src/tmp/rpm-tmp.51587 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + rm -rf pymol-1.7.2.1 + echo 'Source #0 (pymol-1.7.2.1.tar.bz2):' Source #0 (pymol-1.7.2.1.tar.bz2): + /bin/bzip2 -dc /usr/src/RPM/SOURCES/pymol-1.7.2.1.tar.bz2 + /bin/tar -xf - + cd pymol-1.7.2.1 + /bin/chmod -c -Rf u+rwX,go-w . + cp /usr/src/RPM/SOURCES/PymolRef.pdf ./ + exit 0 Executing(%build): /bin/sh -e /usr/src/tmp/rpm-tmp.1860 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd pymol-1.7.2.1 + CFLAGS='-pipe -Wall -g -O2' + export CFLAGS + CXXFLAGS='-pipe -Wall -g -O2' + export CXXFLAGS + FFLAGS='-pipe -Wall -g -O2' + export FFLAGS + /usr/bin/python2.7 setup.py build running build running build_py creating build/lib.linux-x86_64-2.7 creating build/lib.linux-x86_64-2.7/pymol creating build/lib.linux-x86_64-2.7/pymol/embed creating build/lib.linux-x86_64-2.7/pymol/embed/epymol copying modules/pymol/embed/epymol/__init__.py -> build/lib.linux-x86_64-2.7/pymol/embed/epymol creating build/lib.linux-x86_64-2.7/chempy creating build/lib.linux-x86_64-2.7/chempy/tinker copying modules/chempy/tinker/state.py -> build/lib.linux-x86_64-2.7/chempy/tinker copying modules/chempy/tinker/realtime.py -> build/lib.linux-x86_64-2.7/chempy/tinker copying modules/chempy/tinker/keyword.py -> build/lib.linux-x86_64-2.7/chempy/tinker copying modules/chempy/tinker/amber.py -> build/lib.linux-x86_64-2.7/chempy/tinker copying modules/chempy/tinker/__init__.py -> build/lib.linux-x86_64-2.7/chempy/tinker creating build/lib.linux-x86_64-2.7/pmg_tk creating build/lib.linux-x86_64-2.7/pmg_tk/skins creating build/lib.linux-x86_64-2.7/pmg_tk/skins/demo copying modules/pmg_tk/skins/demo/__init__.py -> build/lib.linux-x86_64-2.7/pmg_tk/skins/demo creating build/lib.linux-x86_64-2.7/pmg_tk/startup copying modules/pmg_tk/startup/remote_pdb_load.py -> build/lib.linux-x86_64-2.7/pmg_tk/startup copying modules/pmg_tk/startup/apbs_tools.py -> build/lib.linux-x86_64-2.7/pmg_tk/startup copying modules/pmg_tk/startup/__init__.py -> build/lib.linux-x86_64-2.7/pmg_tk/startup creating build/lib.linux-x86_64-2.7/pymol/opengl creating build/lib.linux-x86_64-2.7/pymol/opengl/glu copying modules/pymol/opengl/glu/__init__.py -> build/lib.linux-x86_64-2.7/pymol/opengl/glu creating build/lib.linux-x86_64-2.7/pmg_wx copying modules/pmg_wx/__init__.py -> build/lib.linux-x86_64-2.7/pmg_wx creating build/lib.linux-x86_64-2.7/chempy/fast copying modules/chempy/fast/__init__.py -> build/lib.linux-x86_64-2.7/chempy/fast creating build/lib.linux-x86_64-2.7/chempy/fragments copying modules/chempy/fragments/__init__.py -> build/lib.linux-x86_64-2.7/chempy/fragments copying modules/pmg_tk/skins/__init__.py -> build/lib.linux-x86_64-2.7/pmg_tk/skins creating build/lib.linux-x86_64-2.7/web copying modules/web/pymolhttpd.py -> build/lib.linux-x86_64-2.7/web copying modules/web/__init__.py -> build/lib.linux-x86_64-2.7/web copying modules/pymol/embed/__init__.py -> build/lib.linux-x86_64-2.7/pymol/embed creating build/lib.linux-x86_64-2.7/pymol/contrib copying modules/pymol/contrib/__init__.py -> build/lib.linux-x86_64-2.7/pymol/contrib creating build/lib.linux-x86_64-2.7/pymol/opengl/glut copying modules/pymol/opengl/glut/__init__.py -> build/lib.linux-x86_64-2.7/pymol/opengl/glut creating build/lib.linux-x86_64-2.7/pymol2 copying modules/pymol2/make_cmd2.py -> build/lib.linux-x86_64-2.7/pymol2 copying modules/pymol2/cmd2.py -> build/lib.linux-x86_64-2.7/pymol2 copying modules/pymol2/__init__.py -> build/lib.linux-x86_64-2.7/pymol2 creating build/lib.linux-x86_64-2.7/web/examples copying modules/web/examples/justhttpd.py -> build/lib.linux-x86_64-2.7/web/examples copying modules/web/examples/__init__.py -> build/lib.linux-x86_64-2.7/web/examples copying modules/pmg_tk/volume.py -> build/lib.linux-x86_64-2.7/pmg_tk copying modules/pmg_tk/__init__.py -> build/lib.linux-x86_64-2.7/pmg_tk copying modules/pmg_tk/TextEditor.py -> build/lib.linux-x86_64-2.7/pmg_tk copying modules/pmg_tk/Setting.py -> build/lib.linux-x86_64-2.7/pmg_tk copying modules/pmg_tk/SetEditor.py -> build/lib.linux-x86_64-2.7/pmg_tk copying modules/pmg_tk/PyMOLMapLoad.py -> build/lib.linux-x86_64-2.7/pmg_tk copying modules/pmg_tk/PMGApp.py -> build/lib.linux-x86_64-2.7/pmg_tk copying modules/pmg_tk/Demo.py -> build/lib.linux-x86_64-2.7/pmg_tk copying modules/pmg_tk/ColorEditor.py -> build/lib.linux-x86_64-2.7/pmg_tk creating build/lib.linux-x86_64-2.7/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/builder.py -> build/lib.linux-x86_64-2.7/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/__init__.py -> build/lib.linux-x86_64-2.7/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/ModalWindow.py -> build/lib.linux-x86_64-2.7/pmg_tk/skins/normal creating build/lib.linux-x86_64-2.7/chempy/champ copying modules/chempy/champ/formal_charges.py -> build/lib.linux-x86_64-2.7/chempy/champ copying modules/chempy/champ/assign.py -> build/lib.linux-x86_64-2.7/chempy/champ copying modules/chempy/champ/amber99.py -> build/lib.linux-x86_64-2.7/chempy/champ copying modules/chempy/champ/__init__.py -> build/lib.linux-x86_64-2.7/chempy/champ creating build/lib.linux-x86_64-2.7/pymol/embed/wxpymol copying modules/pymol/embed/wxpymol/__init__.py -> build/lib.linux-x86_64-2.7/pymol/embed/wxpymol creating build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/toggle.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/stereodemo.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/security.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/sculpting.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/renaming.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/pseudoatom.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/pair_fit.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/mutagenesis.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/message.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/measurement.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/label.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/filter.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/fedora.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/dragging.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/distance.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/density.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/demo.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/cleanup.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/charge.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/box.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/benchmark.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/appearance.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/annotation.py -> build/lib.linux-x86_64-2.7/pymol/wizard copying modules/pymol/wizard/__init__.py -> build/lib.linux-x86_64-2.7/pymol/wizard creating build/lib.linux-x86_64-2.7/pymol/opengl/gl copying modules/pymol/opengl/gl/__init__.py -> build/lib.linux-x86_64-2.7/pymol/opengl/gl copying modules/pymol/xwin.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/xray.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/wizarding.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/viewing.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/vfont.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/util.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/shortcut.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/setting.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/selector.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/selecting.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/rpc.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/querying.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/preset.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/povray.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/parsing.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/parser.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/moving.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/movie.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/monitoring.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/menu.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/m4x.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/locking.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/keywords.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/keyboard.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/invocation.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/internal.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/importing.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/helping.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/headering.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/gui.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/fitting.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/feedingback.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/externing.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/exporting.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/experimenting.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/editor.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/editing.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/creating.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/controlling.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/constants_palette.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/constants.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/computing.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/completing.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/commanding.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/colorramping.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/cmd.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/checking.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/cgo.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/callback.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/api.py -> build/lib.linux-x86_64-2.7/pymol copying modules/pymol/__init__.py -> build/lib.linux-x86_64-2.7/pymol creating build/lib.linux-x86_64-2.7/chempy/bmin copying modules/chempy/bmin/util.py -> build/lib.linux-x86_64-2.7/chempy/bmin copying modules/chempy/bmin/state.py -> build/lib.linux-x86_64-2.7/chempy/bmin copying modules/chempy/bmin/realtime.py -> build/lib.linux-x86_64-2.7/chempy/bmin copying modules/chempy/bmin/commands.py -> build/lib.linux-x86_64-2.7/chempy/bmin copying modules/chempy/bmin/__init__.py -> build/lib.linux-x86_64-2.7/chempy/bmin copying modules/chempy/xyz.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/water_residues.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/water_amber.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/solvate.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/sdf.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/protein_residues.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/protein_mmff.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/protein_amber99.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/protein_amber.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/protein.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/place.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/pkl.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/pdb.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/neighbor.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/mol2.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/mol.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/models.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/mmd.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/mass.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/map.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/mae.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/lst.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/io.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/hetatm.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/gms.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/gamess1.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/dictdb.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/cpv.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/cif.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/charge.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/cex.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/cc1.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/brick.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/bonds.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/bond_mmff.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/bond_amber.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/arc.py -> build/lib.linux-x86_64-2.7/chempy copying modules/chempy/__init__.py -> build/lib.linux-x86_64-2.7/chempy creating build/lib.linux-x86_64-2.7/pymol/plugins copying modules/pymol/plugins/repository.py -> build/lib.linux-x86_64-2.7/pymol/plugins copying modules/pymol/plugins/managergui.py -> build/lib.linux-x86_64-2.7/pymol/plugins copying modules/pymol/plugins/legacysupport.py -> build/lib.linux-x86_64-2.7/pymol/plugins copying modules/pymol/plugins/installation.py -> build/lib.linux-x86_64-2.7/pymol/plugins copying modules/pymol/plugins/__init__.py -> build/lib.linux-x86_64-2.7/pymol/plugins copying modules/pymol/opengl/__init__.py -> build/lib.linux-x86_64-2.7/pymol/opengl running build_ext building 'pymol._cmd' extension creating build/temp.linux-x86_64-2.7 creating build/temp.linux-x86_64-2.7/ov creating build/temp.linux-x86_64-2.7/ov/src creating build/temp.linux-x86_64-2.7/layer0 creating build/temp.linux-x86_64-2.7/layer1 creating build/temp.linux-x86_64-2.7/layer2 creating build/temp.linux-x86_64-2.7/layer3 creating build/temp.linux-x86_64-2.7/layer4 creating build/temp.linux-x86_64-2.7/layer5 creating build/temp.linux-x86_64-2.7/modules creating build/temp.linux-x86_64-2.7/modules/cealign creating build/temp.linux-x86_64-2.7/modules/cealign/src creating build/temp.linux-x86_64-2.7/build creating build/temp.linux-x86_64-2.7/build/generated creating build/temp.linux-x86_64-2.7/contrib creating build/temp.linux-x86_64-2.7/contrib/uiuc creating build/temp.linux-x86_64-2.7/contrib/uiuc/plugins creating build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin creating build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c ov/src/ov_utility.c -o build/temp.linux-x86_64-2.7/ov/src/ov_utility.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c ov/src/OVRandom.c -o build/temp.linux-x86_64-2.7/ov/src/OVRandom.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c ov/src/OVOneToOne.c -o build/temp.linux-x86_64-2.7/ov/src/OVOneToOne.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c ov/src/OVOneToAny.c -o build/temp.linux-x86_64-2.7/ov/src/OVOneToAny.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c ov/src/OVLexicon.c -o build/temp.linux-x86_64-2.7/ov/src/OVLexicon.o -ffast-math -funroll-loops -O3 -fcommon ov/src/OVLexicon.c: In function 'OVLexicon_BorrowFromCString': ov/src/OVLexicon.c:360:11: warning: variable 'cur_index' set but not used [-Wunused-but-set-variable] ov_word cur_index = 0; ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c ov/src/OVHeapArray.c -o build/temp.linux-x86_64-2.7/ov/src/OVHeapArray.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c ov/src/OVHeap.c -o build/temp.linux-x86_64-2.7/ov/src/OVHeap.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c ov/src/OVContext.c -o build/temp.linux-x86_64-2.7/ov/src/OVContext.o -ffast-math -funroll-loops -O3 -fcommon ov/src/OVContext.c: In function 'OVContext_Del': ov/src/OVContext.c:21:13: warning: variable 'heap' set but not used [-Wunused-but-set-variable] OVHeap *heap = I->heap; ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/os_gl.c -o build/temp.linux-x86_64-2.7/layer0/os_gl.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Word.c -o build/temp.linux-x86_64-2.7/layer0/Word.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Vector.c -o build/temp.linux-x86_64-2.7/layer0/Vector.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Util.c -o build/temp.linux-x86_64-2.7/layer0/Util.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Triangle.c -o build/temp.linux-x86_64-2.7/layer0/Triangle.o -ffast-math -funroll-loops -O3 -fcommon layer0/Triangle.c: In function 'TriangleBuildLast': layer0/Triangle.c:1511:7: warning: variable 'both_active' set but not used [-Wunused-but-set-variable] int both_active; ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Tracker.c -o build/temp.linux-x86_64-2.7/layer0/Tracker.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Texture.c -o build/temp.linux-x86_64-2.7/layer0/Texture.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Tetsurf.c -o build/temp.linux-x86_64-2.7/layer0/Tetsurf.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Sphere.c -o build/temp.linux-x86_64-2.7/layer0/Sphere.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/ShaderMgr.c -o build/temp.linux-x86_64-2.7/layer0/ShaderMgr.o -ffast-math -funroll-loops -O3 -fcommon In file included from /usr/include/python2.7/Python.h:8:0, from layer0/os_python.h:28, from layer0/ShaderMgr.c:18: /usr/include/python2.7/pyconfig.h:1194:0: warning: "_POSIX_C_SOURCE" redefined #define _POSIX_C_SOURCE 200112L ^ In file included from /usr/include/malloc.h:22:0, from layer0/os_predef.h:106, from layer0/os_gl_pre.h:4, from layer0/os_gl.h:4, from layer0/ShaderMgr.c:17: /usr/include/features.h:225:0: note: this is the location of the previous definition # define _POSIX_C_SOURCE 200809L ^ layer0/ShaderMgr.c: In function 'CShaderPrg_ReplaceStringsInPlace': layer0/ShaderMgr.c:161:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(rstr=strstr(dest_line, replaceStrings[i])){ ^ layer0/ShaderMgr.c: In function 'CShaderMgr_Reload_Shader_Variables': layer0/ShaderMgr.c:401:7: warning: variable 'bg_image_mode_solid' set but not used [-Wunused-but-set-variable] int bg_image_mode_solid; ^ layer0/ShaderMgr.c: In function 'CShaderPrg_BindAttribLocations': layer0/ShaderMgr.c:509:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (err = glGetError()){ ^ layer0/ShaderMgr.c:513:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (err = glGetError()){ ^ layer0/ShaderMgr.c:517:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (err = glGetError()){ ^ layer0/ShaderMgr.c: In function 'CShaderPrg_BindLabelAttribLocations': layer0/ShaderMgr.c:528:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (err = glGetError()){ ^ layer0/ShaderMgr.c:535:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (err = glGetError()){ ^ layer0/ShaderMgr.c: In function 'CShaderPrg_BindCylinderAttribLocations': layer0/ShaderMgr.c:549:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (err = glGetError()){ ^ layer0/ShaderMgr.c:553:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (err = glGetError()){ ^ layer0/ShaderMgr.c:557:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (err = glGetError()){ ^ layer0/ShaderMgr.c:561:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (err = glGetError()){ ^ layer0/ShaderMgr.c: In function 'CShaderPrg_Reload': layer0/ShaderMgr.c:700:24: warning: unused variable 'needAttach' [-Wunused-variable] int status, howLong, needAttach = 0; ^ layer0/ShaderMgr.c: In function 'ShaderMgrConfig': layer0/ShaderMgr.c:836:14: warning: unused variable 'err' [-Wunused-variable] GLenum err ; ^ layer0/ShaderMgr.c:885:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (err = glGetError()){ ^ layer0/ShaderMgr.c:889:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (err = glGetError()){ ^ layer0/ShaderMgr.c: In function 'CShaderPrg_Enable_CylinderShader': layer0/ShaderMgr.c:1882:10: warning: variable 'm' set but not used [-Wunused-but-set-variable] float *m; ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Raw.c -o build/temp.linux-x86_64-2.7/layer0/Raw.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Queue.c -o build/temp.linux-x86_64-2.7/layer0/Queue.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Pixmap.c -o build/temp.linux-x86_64-2.7/layer0/Pixmap.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Parse.c -o build/temp.linux-x86_64-2.7/layer0/Parse.o -ffast-math -funroll-loops -O3 -fcommon layer0/Parse.c: In function 'ParseFloat3List': layer0/Parse.c:173:10: warning: array subscript has type 'char' [-Wchar-subscripts] buf[blen] = 0; ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/MyPNG.c -o build/temp.linux-x86_64-2.7/layer0/MyPNG.o -ffast-math -funroll-loops -O3 -fcommon In file included from /usr/include/python2.7/Python.h:8:0, from layer0/os_python.h:28, from layer1/Setting.h:20, from layer0/MyPNG.c:56: /usr/include/python2.7/pyconfig.h:1194:0: warning: "_POSIX_C_SOURCE" redefined #define _POSIX_C_SOURCE 200112L ^ In file included from /usr/include/malloc.h:22:0, from layer0/os_predef.h:106, from layer0/MyPNG.c:16: /usr/include/features.h:225:0: note: this is the location of the previous definition # define _POSIX_C_SOURCE 200809L ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/MemoryDebug.c -o build/temp.linux-x86_64-2.7/layer0/MemoryDebug.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/MemoryCache.c -o build/temp.linux-x86_64-2.7/layer0/MemoryCache.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Matrix.c -o build/temp.linux-x86_64-2.7/layer0/Matrix.o -ffast-math -funroll-loops -O3 -fcommon layer0/Matrix.c: In function 'MatrixFitRMSTTTf': layer0/Matrix.c:1180:18: warning: variable 'ix' set but not used [-Wunused-but-set-variable] int iters, ix, iy, iz, unchanged = 0; ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Match.c -o build/temp.linux-x86_64-2.7/layer0/Match.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Map.c -o build/temp.linux-x86_64-2.7/layer0/Map.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Isosurf.c -o build/temp.linux-x86_64-2.7/layer0/Isosurf.o -ffast-math -funroll-loops -O3 -fcommon layer0/Isosurf.c: In function 'IsosurfNewFromPyList': layer0/Isosurf.c:168:7: warning: variable 'll' set but not used [-Wunused-but-set-variable] int ll; ^ layer0/Isosurf.c: In function 'IsofieldGetCorners': layer0/Isosurf.c:2211:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Field.c -o build/temp.linux-x86_64-2.7/layer0/Field.o -ffast-math -funroll-loops -O3 -fcommon layer0/Field.c: In function 'FieldNewFromPyList': layer0/Field.c:126:7: warning: variable 'll' set but not used [-Wunused-but-set-variable] int ll; ^ layer0/Field.c:125:16: warning: variable 'n_elem' set but not used [-Wunused-but-set-variable] unsigned int n_elem; ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Feedback.c -o build/temp.linux-x86_64-2.7/layer0/Feedback.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Err.c -o build/temp.linux-x86_64-2.7/layer0/Err.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Deferred.c -o build/temp.linux-x86_64-2.7/layer0/Deferred.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Debug.c -o build/temp.linux-x86_64-2.7/layer0/Debug.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Crystal.c -o build/temp.linux-x86_64-2.7/layer0/Crystal.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Block.c -o build/temp.linux-x86_64-2.7/layer0/Block.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/Wizard.c -o build/temp.linux-x86_64-2.7/layer1/Wizard.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/View.c -o build/temp.linux-x86_64-2.7/layer1/View.o -ffast-math -funroll-loops -O3 -fcommon layer1/View.c: In function 'matrix_interpolate': layer1/View.c:657:23: warning: variable 'center' set but not used [-Wunused-but-set-variable] float p0[3], p1[3], center[3]; ^ layer1/View.c:657:16: warning: variable 'p1' set but not used [-Wunused-but-set-variable] float p0[3], p1[3], center[3]; ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/TypeFace.c -o build/temp.linux-x86_64-2.7/layer1/TypeFace.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/Text.c -o build/temp.linux-x86_64-2.7/layer1/Text.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/Symmetry.c -o build/temp.linux-x86_64-2.7/layer1/Symmetry.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/Shaker.c -o build/temp.linux-x86_64-2.7/layer1/Shaker.o -ffast-math -funroll-loops -O3 -fcommon layer1/Shaker.c: In function 'ShakerGetPyra': layer1/Shaker.c:73:16: warning: variable 't0' set but not used [-Wunused-but-set-variable] float av[3], t0[3]; ^ layer1/Shaker.c: In function 'ShakerDoPyra': layer1/Shaker.c:94:16: warning: variable 't0' set but not used [-Wunused-but-set-variable] float av[3], t0[3], push[3]; ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/Setting.c -o build/temp.linux-x86_64-2.7/layer1/Setting.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/Seq.c -o build/temp.linux-x86_64-2.7/layer1/Seq.o -ffast-math -funroll-loops -O3 -fcommon layer1/Seq.c: In function 'SeqDrag': layer1/Seq.c:182:16: warning: variable 'col' set but not used [-Wunused-but-set-variable] CSeqCol *col; ^ layer1/Seq.c: In function 'SeqRelease': layer1/Seq.c:213:16: warning: variable 'col' set but not used [-Wunused-but-set-variable] CSeqCol *col; ^ layer1/Seq.c: In function 'SeqClick': layer1/Seq.c:267:16: warning: variable 'col' set but not used [-Wunused-but-set-variable] CSeqCol *col; ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/ScrollBar.c -o build/temp.linux-x86_64-2.7/layer1/ScrollBar.o -ffast-math -funroll-loops -O3 -fcommon In file included from /usr/include/python2.7/Python.h:8:0, from layer0/os_python.h:28, from layer1/Setting.h:20, from layer1/CGO.h:22, from layer1/ScrollBar.c:23: /usr/include/python2.7/pyconfig.h:1194:0: warning: "_POSIX_C_SOURCE" redefined #define _POSIX_C_SOURCE 200112L ^ In file included from /usr/include/malloc.h:22:0, from layer0/os_predef.h:106, from layer0/os_gl_pre.h:4, from layer0/os_gl.h:4, from layer1/ScrollBar.c:17: /usr/include/features.h:225:0: note: this is the location of the previous definition # define _POSIX_C_SOURCE 200809L ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/Scene.c -o build/temp.linux-x86_64-2.7/layer1/Scene.o -ffast-math -funroll-loops -O3 -fcommon layer1/Scene.c: In function 'SceneDrawImageOverlay': layer1/Scene.c:3348:20: warning: variable 'color_word' set but not used [-Wunused-but-set-variable] unsigned int color_word; ^ layer1/Scene.c: In function 'SceneReadTriplets': layer1/Scene.c:3571:7: warning: variable 'dim' set but not used [-Wunused-but-set-variable] int dim[3]; ^ layer1/Scene.c: In function 'SceneDrag': layer1/Scene.c:5957:8: warning: variable 'result' set but not used [-Wunused-but-set-variable] int result, which_light; ^ layer1/Scene.c:6005:8: warning: variable 'result' set but not used [-Wunused-but-set-variable] int result, which_light; ^ layer1/Scene.c: In function 'SceneReshape': layer1/Scene.c:6381:7: warning: variable 'y' set but not used [-Wunused-but-set-variable] int y = height; ^ layer1/Scene.c: In function 'SceneApplyImageGamma': layer1/Scene.c:6538:7: warning: variable 'big_endian' set but not used [-Wunused-but-set-variable] int big_endian; ^ layer1/Scene.c: In function 'SceneRay': layer1/Scene.c:6766:7: warning: variable 'curState' set but not used [-Wunused-but-set-variable] int curState; ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/Rep.c -o build/temp.linux-x86_64-2.7/layer1/Rep.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/Ray.c -o build/temp.linux-x86_64-2.7/layer1/Ray.o -ffast-math -funroll-loops -O3 -fcommon In file included from layer1/Ray.c:44:0: layer1/Basis.c: In function 'ConeLineToSphereCapped': layer1/Basis.c:846:11: warning: variable 'base2orig_len' set but not used [-Wunused-but-set-variable] float base2orig_len, base2orig_len_sq; ^ layer1/Basis.c: In function 'BasisHitShadow': layer1/Basis.c:2361:7: warning: variable 'check_interior_flag' set but not used [-Wunused-but-set-variable] int check_interior_flag; ^ layer1/Basis.c:2360:7: warning: variable 'excl_trans_flag' set but not used [-Wunused-but-set-variable] int excl_trans_flag; ^ layer1/Ray.c: In function 'RayRenderG3d': layer1/Ray.c:967:36: warning: variable 'scale_z' set but not used [-Wunused-but-set-variable] register float scale_x, scale_y, scale_z; ^ layer1/Ray.c: In function 'RayRenderIDTF': layer1/Ray.c:2132:11: warning: variable 'mesh_start' set but not used [-Wunused-but-set-variable] int mesh_start = 0; ^ layer1/Ray.c: In function 'RayRenderPOV': layer1/Ray.c:2445:28: warning: variable 'bkrd_bottom' set but not used [-Wunused-but-set-variable] float *bkrd, *bkrd_top, *bkrd_bottom; ^ layer1/Ray.c:2445:17: warning: variable 'bkrd_top' set but not used [-Wunused-but-set-variable] float *bkrd, *bkrd_top, *bkrd_bottom; ^ layer1/Ray.c:2443:7: warning: variable 'fogRangeFlag' set but not used [-Wunused-but-set-variable] int fogRangeFlag = false; ^ layer1/Ray.c:2442:7: warning: variable 'fogFlag' set but not used [-Wunused-but-set-variable] int fogFlag = false; ^ layer1/Ray.c: In function 'RayRender': layer1/Ray.c:6122:15: warning: variable 'dc' set but not used [-Wunused-but-set-variable] int dc = 0; ^ In file included from layer1/Ray.c:24:0: layer1/Basis.c: In function 'BasisMakeMap': layer0/Err.h:27:27: warning: 'tempRef' may be used uninitialized in this function [-Wmaybe-uninitialized] #define ErrChkPtr(G,p) {if(!p) ErrPointer(G,__FILE__,__LINE__);} ^ In file included from layer1/Ray.c:44:0: layer1/Basis.c:2871:17: note: 'tempRef' was declared here register int *tempRef; ^ layer1/Ray.c: In function 'RayTraceThread': layer1/Ray.c:3478:25: warning: 'back_mask' may be used uninitialized in this function [-Wmaybe-uninitialized] bkrd_value = back_mask | ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/PyMOLObject.c -o build/temp.linux-x86_64-2.7/layer1/PyMOLObject.o -ffast-math -funroll-loops -O3 -fcommon layer1/PyMOLObject.c: In function 'ObjectMotion': layer1/PyMOLObject.c:384:13: warning: variable 'zero_flag' set but not used [-Wunused-but-set-variable] int zero_flag = -1; ^ layer1/PyMOLObject.c: In function 'ObjectStateFromPyList': layer1/PyMOLObject.c:1469:7: warning: variable 'll' set but not used [-Wunused-but-set-variable] int ll = 0; ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/Pop.c -o build/temp.linux-x86_64-2.7/layer1/Pop.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/PConv.c -o build/temp.linux-x86_64-2.7/layer1/PConv.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/P.c -o build/temp.linux-x86_64-2.7/layer1/P.o -ffast-math -funroll-loops -O3 -fcommon layer1/P.c: In function 'PLabelExprUsesVariable': layer1/P.c:191:17: warning: variable 'buffer' set but not used [-Wunused-but-set-variable] OrthoLineType buffer; ^ layer1/P.c: In function 'PLabelAtomAlt': layer1/P.c:343:8: warning: the address of 'tok' will always evaluate as 'true' [-Waddress] if (tok && tok[0]){ ^ layer1/P.c: In function 'PAlterAtomState': layer1/P.c:824:59: warning: variable 'z_id1' set but not used [-Wunused-but-set-variable] PyObject *x_id1, *x_id2 = NULL, *y_id1, *y_id2 = NULL, *z_id1, *z_id2 = NULL; ^ layer1/P.c:824:36: warning: variable 'y_id1' set but not used [-Wunused-but-set-variable] PyObject *x_id1, *x_id2 = NULL, *y_id1, *y_id2 = NULL, *z_id1, *z_id2 = NULL; ^ layer1/P.c:824:13: warning: variable 'x_id1' set but not used [-Wunused-but-set-variable] PyObject *x_id1, *x_id2 = NULL, *y_id1, *y_id2 = NULL, *z_id1, *z_id2 = NULL; ^ layer1/P.c: In function 'PUnlockAPIAsGlut': layer1/P.c:1467:5: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'long int' [-Wformat=] " PUnlockAPIAsGlut-DEBUG: entered as thread 0x%x\n", PyThread_get_thread_ident() ^ layer1/P.c: In function 'PUnlockAPIAsGlutNoFlush': layer1/P.c:1481:5: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'long int' [-Wformat=] " PUnlockAPIAsGlut-DEBUG: entered as thread 0x%x\n", PyThread_get_thread_ident() ^ layer1/P.c: In function 'PLockAPIAsGlut': layer1/P.c:1532:5: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'long int' [-Wformat=] "*PLockAPIAsGlut-DEBUG: entered as thread 0x%x\n", PyThread_get_thread_ident() ^ layer1/P.c:1544:5: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'long int' [-Wformat=] "#PLockAPIAsGlut-DEBUG: acquiring lock as thread 0x%x\n", PyThread_get_thread_ident() ^ layer1/P.c:1562:7: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'long int' [-Wformat=] "-PLockAPIAsGlut-DEBUG: glut_thread_keep_out 0x%x\n", PyThread_get_thread_ident() ^ layer1/P.c: In function 'PFlush': layer1/P.c:2635:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(size = OrthoCommandOutSize(G)){ ^ layer1/P.c: In function 'PFlushFast': layer1/P.c:2679:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(size = OrthoCommandOutSize(G)){ ^ layer1/P.c:2691:7: warning: format '%x' expects argument of type 'unsigned int', but argument 4 has type 'long int' [-Wformat=] " PFlushFast-DEBUG: executing '%s' as thread 0x%x\n", buffer, ^ layer1/P.c: In function 'PAutoBlock': layer1/P.c:2787:9: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'long int' [-Wformat=] " PAutoBlock-DEBUG: blocked 0x%x (0x%x, 0x%x, 0x%x)\n", ^ layer1/P.c:2796:5: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'long int' [-Wformat=] " PAutoBlock-DEBUG: 0x%x not found, thus already blocked.\n", ^ layer1/P.c: In function 'PUnblock': layer1/P.c:2817:5: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'long int' [-Wformat=] " PUnblock-DEBUG: entered as thread 0x%x\n", PyThread_get_thread_ident() ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/Ortho.c -o build/temp.linux-x86_64-2.7/layer1/Ortho.o -ffast-math -funroll-loops -O3 -fcommon layer1/Ortho.c: In function 'OrthoDoDraw': layer1/Ortho.c:1520:10: warning: variable 'v' set but not used [-Wunused-but-set-variable] float *v; ^ layer1/Ortho.c: In function 'bg_grad': layer1/Ortho.c:1430:7: warning: 'cgo2' may be used uninitialized in this function [-Wmaybe-uninitialized] CGOFree(cgo2); ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/Movie.c -o build/temp.linux-x86_64-2.7/layer1/Movie.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/FontType.c -o build/temp.linux-x86_64-2.7/layer1/FontType.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/FontGLUTHel18.c -o build/temp.linux-x86_64-2.7/layer1/FontGLUTHel18.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/FontGLUTHel12.c -o build/temp.linux-x86_64-2.7/layer1/FontGLUTHel12.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/FontGLUTHel10.c -o build/temp.linux-x86_64-2.7/layer1/FontGLUTHel10.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/FontGLUT9x15.c -o build/temp.linux-x86_64-2.7/layer1/FontGLUT9x15.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/FontGLUT8x13.c -o build/temp.linux-x86_64-2.7/layer1/FontGLUT8x13.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/FontGLUT.c -o build/temp.linux-x86_64-2.7/layer1/FontGLUT.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/Font.c -o build/temp.linux-x86_64-2.7/layer1/Font.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/Extrude.c -o build/temp.linux-x86_64-2.7/layer1/Extrude.o -ffast-math -funroll-loops -O3 -fcommon layer1/Extrude.c: In function 'ExtrudeCGOSurfaceVariableTube': layer1/Extrude.c:1124:14: warning: variable 'stop' set but not used [-Wunused-but-set-variable] int start, stop; ^ layer1/Extrude.c:1124:7: warning: variable 'start' set but not used [-Wunused-but-set-variable] int start, stop; ^ In file included from layer0/OOMac.h:21:0, from layer1/Extrude.c:25: layer1/Extrude.c: In function 'ExtrudeCGOSurfaceTube': layer0/Err.h:29:43: warning: 'TN' may be used uninitialized in this function [-Wmaybe-uninitialized] #define CHECKOK(ok, var) ok &= var ? true : false; ^ layer1/Extrude.c:690:47: note: 'TN' was declared here float *sv, *sn, *tv, *tn, *tv1, *tn1, *TV, *TN; ^ In file included from layer0/OOMac.h:21:0, from layer1/Extrude.c:25: layer1/Extrude.c: In function 'ExtrudeCGOSurfacePolygon': layer0/Err.h:29:43: warning: 'TN' may be used uninitialized in this function [-Wmaybe-uninitialized] #define CHECKOK(ok, var) ok &= var ? true : false; ^ layer1/Extrude.c:1390:47: note: 'TN' was declared here float *sv, *sn, *tv, *tn, *tv1, *tn1, *TV, *TN; ^ In file included from layer0/OOMac.h:21:0, from layer1/Extrude.c:25: layer1/Extrude.c: In function 'ExtrudeCGOSurfaceStrand': layer0/Err.h:29:43: warning: 'TN' may be used uninitialized in this function [-Wmaybe-uninitialized] #define CHECKOK(ok, var) ok &= var ? true : false; ^ layer1/Extrude.c:1708:47: note: 'TN' was declared here float *sv, *sn, *tv, *tn, *tv1, *tn1, *TV, *TN; ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/Control.c -o build/temp.linux-x86_64-2.7/layer1/Control.o -ffast-math -funroll-loops -O3 -fcommon layer1/Control.c: In function 'ControlDrag': layer1/Control.c:252:7: warning: variable 'width' set but not used [-Wunused-but-set-variable] int width; ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/Color.c -o build/temp.linux-x86_64-2.7/layer1/Color.o -ffast-math -funroll-loops -O3 -fcommon layer1/Color.c: In function 'ColorExtFromPyList': layer1/Color.c:406:7: warning: variable 'll' set but not used [-Wunused-but-set-variable] int ll; ^ layer1/Color.c: In function 'ColorDef': layer1/Color.c:576:7: warning: variable 'best' set but not used [-Wunused-but-set-variable] int best; ^ layer1/Color.c: In function 'Color3fToInt': layer1/Color.c:3069:16: warning: unused variable 'result' [-Wunused-variable] unsigned int result; ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/Character.c -o build/temp.linux-x86_64-2.7/layer1/Character.o -ffast-math -funroll-loops -O3 -fcommon In file included from /usr/include/python2.7/Python.h:8:0, from layer0/os_python.h:28, from layer1/Setting.h:20, from layer1/CGO.h:22, from layer1/Character.c:29: /usr/include/python2.7/pyconfig.h:1194:0: warning: "_POSIX_C_SOURCE" redefined #define _POSIX_C_SOURCE 200112L ^ In file included from /usr/include/malloc.h:22:0, from layer0/os_predef.h:106, from layer0/os_gl_pre.h:4, from layer0/os_gl.h:4, from layer1/Character.c:18: /usr/include/features.h:225:0: note: this is the location of the previous definition # define _POSIX_C_SOURCE 200809L ^ layer1/Character.c: In function 'CharacterRenderOpenGL': layer1/Character.c:273:18: warning: unused variable 'texVals' [-Wunused-variable] const GLfloat texVals [] = { ^ layer1/Character.c:267:18: warning: unused variable 'vertexVals' [-Wunused-variable] const GLfloat vertexVals [] = { ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/CGO.c -o build/temp.linux-x86_64-2.7/layer1/CGO.o -ffast-math -funroll-loops -O3 -fcommon layer1/CGO.c: In function 'CGONewFromPyList': layer1/CGO.c:329:7: warning: variable 'll' set but not used [-Wunused-but-set-variable] int ll; ^ layer1/CGO.c: In function 'CGOFromFloatArray': layer1/CGO.c:530:7: warning: variable 'c' set but not used [-Wunused-but-set-variable] int c; ^ layer1/CGO.c: In function 'CGOCombineBeginEnd': layer1/CGO.c:1935:11: warning: variable 'pickColorValsUC' set but not used [-Wunused-but-set-variable] uchar *pickColorValsUC; ^ layer1/CGO.c:1881:6: warning: unused variable 'ncolors' [-Wunused-variable] int ncolors = 0; ^ layer1/CGO.c: In function 'CGOCountNumVerticesForScreen': layer1/CGO.c:2313:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(op = (CGO_MASK & CGO_read_int(pc))) { ^ layer1/CGO.c: In function 'OptimizePointsToVBO': layer1/CGO.c:2642:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: OptimizePointsToVBO() BEFORE glGenBuffers returns err=%d\n"); ^ layer1/CGO.c:2645:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: OptimizePointsToVBO() glGenBuffers returns err=%d\n"); ^ layer1/CGO.c:2649:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: OptimizePointsToVBO() glBindBuffer returns err=%d\n"); ^ layer1/CGO.c:2657:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: OptimizePointsToVBO() glBufferData returns err=%d\n"); ^ layer1/CGO.c:2671:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: OptimizePointsToVBO() glBindBuffer returns err=%d\n"); ^ layer1/CGO.c:2682:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: OptimizePointsToVBO() glBufferData returns err=%d\n"); ^ layer1/CGO.c:2688:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: OptimizePointsToVBO() glBindBuffer returns err=%d\n"); ^ layer1/CGO.c:2699:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: OptimizePointsToVBO() glBufferData returns err=%d\n"); ^ layer1/CGO.c:2450:9: warning: variable 'err' set but not used [-Wunused-but-set-variable] short err = 0; ^ layer1/CGO.c: In function 'CGOProcessCGOtoArrays': layer1/CGO.c:2730:9: warning: variable 'err' set but not used [-Wunused-but-set-variable] short err = 0; ^ layer1/CGO.c: In function 'CGOProcessScreenCGOtoArrays': layer1/CGO.c:3012:8: warning: variable 'has_texcoord' set but not used [-Wunused-but-set-variable] short has_texcoord = false; ^ layer1/CGO.c:2966:9: warning: variable 'err' set but not used [-Wunused-but-set-variable] short err = 0; ^ layer1/CGO.c: In function 'CGOOptimizeToVBONotIndexedWithReturnedData': layer1/CGO.c:3220:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBONotIndexed() glGenBuffers returns err=%d\n"); ^ layer1/CGO.c:3224:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBONotIndexed() glBindBuffer returns err=%d\n"); ^ layer1/CGO.c:3232:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBONotIndexed() glBufferData returns err=%d\n"); ^ layer1/CGO.c:3236:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBONotIndexed() glBindBuffer returns err=%d\n"); ^ layer1/CGO.c:3248:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBONotIndexed() glBufferData returns err=%d\n"); ^ layer1/CGO.c:3252:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBONotIndexed() glBindBuffer returns err=%d\n"); ^ layer1/CGO.c:3264:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBONotIndexed() glBufferData returns err=%d\n"); ^ layer1/CGO.c:3268:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBONotIndexed() glBindBuffer returns err=%d\n"); ^ layer1/CGO.c:3275:4: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBONotIndexed() glBufferData returns err=%d\n"); ^ layer1/CGO.c:3505:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBONotIndexed() glGenBuffers returns err=%d\n"); ^ layer1/CGO.c:3509:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBONotIndexed() glBindBuffer returns err=%d\n"); ^ layer1/CGO.c:3517:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBONotIndexed() glBufferData returns err=%d\n"); ^ layer1/CGO.c:3521:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBONotIndexed() glBindBuffer returns err=%d\n"); ^ layer1/CGO.c:3533:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBONotIndexed() glBufferData returns err=%d\n"); ^ layer1/CGO.c:3537:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBONotIndexed() glBindBuffer returns err=%d\n"); ^ layer1/CGO.c:3549:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBONotIndexed() glBufferData returns err=%d\n"); ^ layer1/CGO.c:3141:9: warning: variable 'err' set but not used [-Wunused-but-set-variable] short err = 0; ^ layer1/CGO.c: In function 'CGOOptimizeToVBOIndexedWithColorImpl': layer1/CGO.c:3890:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBOIndexed() BEFORE glGenBuffers returns err=%d\n"); ^ layer1/CGO.c:3893:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBOIndexed() glGenBuffers returns err=%d\n"); ^ layer1/CGO.c:3897:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBOIndexed() glBindBuffer returns err=%d\n"); ^ layer1/CGO.c:3905:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBOIndexed() glBufferData returns err=%d\n"); ^ layer1/CGO.c:3909:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBOIndexed() glBindBuffer returns err=%d\n"); ^ layer1/CGO.c:3921:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBOIndexed() glBufferData returns err=%d\n"); ^ layer1/CGO.c:3925:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBOIndexed() glBindBuffer returns err=%d\n"); ^ layer1/CGO.c:3937:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBOIndexed() glBufferData returns err=%d\n"); ^ layer1/CGO.c:3941:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBOIndexed() glBindBuffer returns err=%d\n"); ^ layer1/CGO.c:3949:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBOIndexed() glBufferData returns err=%d\n"); ^ layer1/CGO.c:3953:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBOIndexed() glBindBuffer returns err=%d\n"); ^ layer1/CGO.c:3960:4: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBOIndexed() glBufferData returns err=%d\n"); ^ layer1/CGO.c:4200:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBOIndexed() BEFORE glGenBuffers returns err=%d\n"); ^ layer1/CGO.c:4203:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBOIndexed() glGenBuffers returns err=%d\n"); ^ layer1/CGO.c:4207:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBOIndexed() glBindBuffer returns err=%d\n"); ^ layer1/CGO.c:4215:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBOIndexed() glBufferData returns err=%d\n"); ^ layer1/CGO.c:4219:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBOIndexed() glBindBuffer returns err=%d\n"); ^ layer1/CGO.c:4231:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBOIndexed() glBufferData returns err=%d\n"); ^ layer1/CGO.c:4235:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBOIndexed() glBindBuffer returns err=%d\n"); ^ layer1/CGO.c:4247:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBOIndexed() glBufferData returns err=%d\n"); ^ layer1/CGO.c:4251:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBOIndexed() glBindBuffer returns err=%d\n"); ^ layer1/CGO.c:4259:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeToVBOIndexed() glBufferData returns err=%d\n"); ^ layer1/CGO.c:3631:9: warning: variable 'err' set but not used [-Wunused-but-set-variable] short err = 0; ^ layer1/CGO.c: In function 'CGOOptimizeGLSLCylindersToVBOIndexedImpl': layer1/CGO.c:4621:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeGLSLCylindersToVBO() BEFORE glGenBuffers returns err=%d\n"); ^ layer1/CGO.c:4624:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeGLSLCylindersToVBO() glGenBuffers returns err=%d\n"); ^ layer1/CGO.c:4628:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeGLSLCylindersToVBO() glBindBuffer returns err=%d\n"); ^ layer1/CGO.c:4661:4: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeGLSLCylindersToVBO() glBufferData returns err=%d\n"); ^ layer1/CGO.c:4667:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeGLSLCylindersToVBO() glBindBuffer returns err=%d\n"); ^ layer1/CGO.c:4671:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeGLSLCylindersToVBO() glBufferData returns err=%d\n"); ^ layer1/CGO.c: In function 'CGOOptimizeSpheresToVBONonIndexedImpl': layer1/CGO.c:4932:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeSpheresToVBONonIndexed() BEFORE glGenBuffers returns err=%d\n"); ^ layer1/CGO.c:4935:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeSpheresToVBONonIndexed() glGenBuffers returns err=%d\n"); ^ layer1/CGO.c:4939:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeSpheresToVBONonIndexed() glBindBuffer returns err=%d\n"); ^ layer1/CGO.c:4963:4: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeSpheresToVBONonIndexed() glBufferData returns err=%d\n"); ^ layer1/CGO.c: In function 'CGOSimplify': layer1/CGO.c:5171:11: warning: variable 'pickColorValsUC' set but not used [-Wunused-but-set-variable] uchar *pickColorValsUC; ^ layer1/CGO.c: In function 'CGOOptimizeTextures': layer1/CGO.c:5385:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeTextures() BEFORE glGenBuffers returns err=%d\n"); ^ layer1/CGO.c:5389:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeTextures() glGenBuffers returns err=%d\n"); ^ layer1/CGO.c:5392:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeTextures() glBindBuffer returns err=%d\n"); ^ layer1/CGO.c:5400:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeTextures() glBufferData returns err=%d\n"); ^ layer1/CGO.c:5405:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeTextures() glBindBuffer returns err=%d\n"); ^ layer1/CGO.c:5412:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeTextures() glBufferData returns err=%d\n"); ^ layer1/CGO.c:5416:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeTextures() glBindBuffer returns err=%d\n"); ^ layer1/CGO.c:5423:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeTextures() glBufferData returns err=%d\n") ^ layer1/CGO.c: In function 'CGOOptimizeLabels': layer1/CGO.c:5582:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeLabels() BEFORE glGenBuffers returns err=%d\n"); ^ layer1/CGO.c:5586:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeLabels() glGenBuffers returns err=%d\n"); ^ layer1/CGO.c:5589:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeLabels() glBindBuffer returns err=%d\n"); ^ layer1/CGO.c:5597:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeLabels() glBufferData returns err=%d\n"); ^ layer1/CGO.c:5602:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeLabels() glBindBuffer returns err=%d\n"); ^ layer1/CGO.c:5609:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeLabels() glBufferData returns err=%d\n"); ^ layer1/CGO.c:5613:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeLabels() glBindBuffer returns err=%d\n"); ^ layer1/CGO.c:5620:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeLabels() glBufferData returns err=%d\n") ^ layer1/CGO.c:5624:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeLabels() glBindBuffer returns err=%d\n"); ^ layer1/CGO.c:5631:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeLabels() glBufferData returns err=%d\n") ^ layer1/CGO.c: In function 'CGOExpandDrawTextures': layer1/CGO.c:5679:30: warning: variable 'onvals' set but not used [-Wunused-but-set-variable] int nvals = narrays*nverts, onvals; ^ layer1/CGO.c: In function 'CGORenderRay': layer1/CGO.c:6220:42: warning: variable 'pickColorVals' set but not used [-Wunused-but-set-variable] float *normalVals = 0, *colorVals = 0, *pickColorVals; ^ layer1/CGO.c: In function 'CGO_gl_draw_buffers_indexed': layer1/CGO.c:6662:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("beginning of CGO_gl_draw_buffers_indexed returns err=%d\n"); ^ layer1/CGO.c:6788:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("CGO_gl_draw_buffers_indexed: before glDrawElements returns err=%d\n"); ^ layer1/CGO.c:6790:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("CGO_gl_draw_buffers_indexed: after glDrawElements returns err=%d\n"); ^ layer1/CGO.c:6835:1: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("CGO_gl_draw_buffers_indexed: end returns err=%d\n"); ^ layer1/CGO.c: In function 'CGO_gl_draw_label': layer1/CGO.c:7136:50: warning: variable 'textExtent' set but not used [-Wunused-but-set-variable] float worldPos[4], screenMin[3], screenMax[3], textExtent[4]; ^ layer1/CGO.c:7136:36: warning: variable 'screenMax' set but not used [-Wunused-but-set-variable] float worldPos[4], screenMin[3], screenMax[3], textExtent[4]; ^ layer1/CGO.c:7136:22: warning: variable 'screenMin' set but not used [-Wunused-but-set-variable] float worldPos[4], screenMin[3], screenMax[3], textExtent[4]; ^ layer1/CGO.c: In function 'CGO_gl_draw_texture': layer1/CGO.c:7177:50: warning: variable 'textExtent' set but not used [-Wunused-but-set-variable] float worldPos[4], screenMin[3], screenMax[3], textExtent[4]; ^ layer1/CGO.c:7177:36: warning: variable 'screenMax' set but not used [-Wunused-but-set-variable] float worldPos[4], screenMin[3], screenMax[3], textExtent[4]; ^ layer1/CGO.c:7177:22: warning: variable 'screenMin' set but not used [-Wunused-but-set-variable] float worldPos[4], screenMin[3], screenMax[3], textExtent[4]; ^ layer1/CGO.c: In function 'CGORenderGLPicking': layer1/CGO.c:7697:73: warning: variable 'pbnd' set but not used [-Wunused-but-set-variable] int nverts = CGO_get_int(pc+3), v, pl, idx = -1, pidx, bnd = -1, pbnd; ^ layer1/CGO.c:7697:57: warning: variable 'pidx' set but not used [-Wunused-but-set-variable] int nverts = CGO_get_int(pc+3), v, pl, idx = -1, pidx, bnd = -1, pbnd; ^ layer1/CGO.c: In function 'CGOSimpleCone': layer1/CGO.c:8765:15: warning: variable 'nub2' set but not used [-Wunused-but-set-variable] float nub1, nub2; ^ layer1/CGO.c:8765:9: warning: variable 'nub1' set but not used [-Wunused-but-set-variable] float nub1, nub2; ^ In file included from layer1/CGO.c:24:0: layer1/CGO.c: In function 'CGOGetSizeWithoutStops': layer1/CGO.h:35:26: warning: value computed is not used [-Wunused-value] #define CGO_read_int(p) (*((int*)((p)++))) ^ layer1/CGO.c:9045:5: note: in expansion of macro 'CGO_read_int' CGO_read_int(pc); ^ layer1/CGO.c: In function 'CGOChangeShadersTo': layer1/CGO.c:9567:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while(op = (CGO_MASK & CGO_read_int(pc))) { ^ layer1/CGO.c: In function 'CGOOptimizeScreenTexturesAndPolygons': layer1/CGO.c:9685:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeScreenTexturesAndPolygons() glGenBuffers returns err=%d\n"); ^ layer1/CGO.c:9689:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeScreenTexturesAndPolygons() glBindBuffer returns err=%d\n"); ^ layer1/CGO.c:9697:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeScreenTexturesAndPolygons() glBufferData returns err=%d\n"); ^ layer1/CGO.c:9701:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeScreenTexturesAndPolygons() glBindBuffer returns err=%d\n"); ^ layer1/CGO.c:9709:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeScreenTexturesAndPolygons() glBufferData returns err=%d\n"); ^ layer1/CGO.c:9713:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeScreenTexturesAndPolygons() glBindBuffer returns err=%d\n"); ^ layer1/CGO.c:9724:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] CHECK_GL_ERROR_OK("ERROR: CGOOptimizeScreenTexturesAndPolygons() glBufferData returns err=%d\n"); ^ layer1/CGO.c: In function 'CGO_gl_draw_buffers': layer1/CGO.c:6649:5: warning: 'shaderPrg' may be used uninitialized in this function [-Wmaybe-uninitialized] CShaderPrg_Disable(shaderPrg); ^ layer1/CGO.c: In function 'CGO_gl_draw_arrays': layer1/CGO.c:6510:12: warning: 'vertexVals' may be used uninitialized in this function [-Wmaybe-uninitialized] float *vertexVals; ^ layer1/CGO.c: In function 'CGOCombineBeginEnd': layer1/CGO.c:1998:13: warning: 'normalVals' may be used uninitialized in this function [-Wmaybe-uninitialized] normalVals[pl] = tmp_ptr[0]; normalVals[pl+1] = tmp_ptr[1]; normalVals[pl+2] = tmp_ptr[2]; ^ layer1/CGO.c: In function 'OptimizePointsToVBO': layer1/CGO.c:2607:8: warning: 'pickColorValsDA' may be used uninitialized in this function [-Wmaybe-uninitialized] SetVertexValuesForVBO(I->G, cgo, arrays, pl, plc, cnt, incr++, ^ layer1/CGO.c: In function 'CGOProcessCGOtoArrays': layer1/CGO.c:2907:8: warning: 'pickColorValsDA' may be used uninitialized in this function [-Wmaybe-uninitialized] SetVertexValuesForVBO(G, cgo, arrays, pl, plc, cnt, incr++, ^ layer1/CGO.c:2927:8: warning: 'accessibilityValsDA' may be used uninitialized in this function [-Wmaybe-uninitialized] SetVertexValuesForVBO(G, cgo, arrays, pl, plc, cnt, incr++, ^ layer1/CGO.c:2907:8: warning: 'normalValsDA' may be used uninitialized in this function [-Wmaybe-uninitialized] SetVertexValuesForVBO(G, cgo, arrays, pl, plc, cnt, incr++, ^ layer1/CGO.c: In function 'CGOOptimizeToVBONotIndexedWithReturnedData': layer1/CGO.c:3457:8: warning: 'pickColorValsDA' may be used uninitialized in this function [-Wmaybe-uninitialized] SetVertexValuesForVBO(I->G, cgo, arrays, pl, plc, cnt, incr++, ^ layer1/CGO.c:3457:8: warning: 'normalValsDA' may be used uninitialized in this function [-Wmaybe-uninitialized] layer1/CGO.c: In function 'CGOSimplify': layer1/CGO.c:5213:13: warning: 'normalVals' may be used uninitialized in this function [-Wmaybe-uninitialized] normalVals[pl] = tmp_ptr[0]; normalVals[pl+1] = tmp_ptr[1]; normalVals[pl+2] = tmp_ptr[2]; ^ layer1/CGO.c: In function 'CGORenderRay': layer1/CGO.c:6244:9: warning: 'vertexVals' may be used uninitialized in this function [-Wmaybe-uninitialized] v0 = &vertexVals[pl]; ^ layer1/CGO.c: In function 'CGORenderGLPicking': layer1/CGO.c:7753:13: warning: 'pca' may be used uninitialized in this function [-Wmaybe-uninitialized] float *pca; ^ layer1/CGO.c:7775:26: warning: 'nverts' may be used uninitialized in this function [-Wmaybe-uninitialized] pickColorVals = pca + nverts; ^ layer1/CGO.c: In function 'CGORenderGL': layer1/CGO.c:8085:12: warning: 'normalVals_tmp' may be used uninitialized in this function [-Wmaybe-uninitialized] n2 = normalVals_tmp + 3; ^ In file included from layer0/OOMac.h:22:0, from layer1/CGO.c:26: layer1/CGO.c: In function 'CGOOptimizeGLSLCylindersToVBOIndexedImpl': layer0/MemoryDebug.h:182:15: warning: 'org_colorVals' may be used uninitialized in this function [-Wmaybe-uninitialized] #define mfree free ^ layer1/CGO.c:4373:12: note: 'org_colorVals' was declared here float *org_colorVals; ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/ButMode.c -o build/temp.linux-x86_64-2.7/layer1/ButMode.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/Basis.c -o build/temp.linux-x86_64-2.7/layer1/Basis.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/VFont.c -o build/temp.linux-x86_64-2.7/layer2/VFont.o -ffast-math -funroll-loops -O3 -fcommon layer2/VFont.c: In function 'VFontIndent': layer2/VFont.c:145:10: warning: variable 'pc' set but not used [-Wunused-but-set-variable] float *pc; ^ layer2/VFont.c:144:9: warning: variable 'base' set but not used [-Wunused-but-set-variable] float base[3], pen[3]; ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/SculptCache.c -o build/temp.linux-x86_64-2.7/layer2/SculptCache.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/Sculpt.c -o build/temp.linux-x86_64-2.7/layer2/Sculpt.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/RepWireBond.c -o build/temp.linux-x86_64-2.7/layer2/RepWireBond.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/RepSurface.c -o build/temp.linux-x86_64-2.7/layer2/RepSurface.o -ffast-math -funroll-loops -O3 -fcommon layer2/RepSurface.c: In function 'RepSurfaceRender': layer2/RepSurface.c:1960:11: warning: variable 'col' set but not used [-Wunused-but-set-variable] float *col; ^ layer2/RepSurface.c:2221:28: warning: variable 'col' set but not used [-Wunused-but-set-variable] float *col; ^ layer2/RepSurface.c: In function 'RepSurfaceColor': layer2/RepSurface.c:3714:22: warning: variable 'planew' set but not used [-Wunused-but-set-variable] float d[3], *vn0, planew, v0mod[3]; ^ layer2/RepSurface.c:3793:29: warning: variable 'planew' set but not used [-Wunused-but-set-variable] float d[3], *vn0, pt[3], planew, v0mod[3]; ^ layer2/RepSurface.c:3793:22: warning: variable 'pt' set but not used [-Wunused-but-set-variable] float d[3], *vn0, pt[3], planew, v0mod[3]; ^ layer2/RepSurface.c:3949:36: warning: variable 'pai2' set but not used [-Wunused-but-set-variable] AtomInfoType *pai = NULL, *pai2 = NULL; /* variables for color smoothing */ ^ layer2/RepSurface.c: In function 'SolventDotNew': layer2/RepSurface.c:5687:7: warning: variable 'maxDot' set but not used [-Wunused-but-set-variable] int maxDot = 0; ^ layer2/RepSurface.c: In function 'SurfaceJobRun': layer2/RepSurface.c:4648:11: warning: 'solv_map' may be used uninitialized in this function [-Wmaybe-uninitialized] MapFree(solv_map); ^ layer2/RepSurface.c: In function 'RepSurfaceRender': layer2/RepSurface.c:3324:6: warning: 'simple' may be used uninitialized in this function [-Wmaybe-uninitialized] CGOFree(simple); ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/RepSphere.c -o build/temp.linux-x86_64-2.7/layer2/RepSphere.o -ffast-math -funroll-loops -O3 -fcommon layer2/RepSphere.c: In function 'RenderSphereMode_Direct': layer2/RepSphere.c:855:13: warning: variable 'last_vdw' set but not used [-Wunused-but-set-variable] float last_vdw = -1.0F; ^ layer2/RepSphere.c: In function 'RepSphereComputeSphereNormals': layer2/RepSphere.c:2176:15: warning: variable 'nbr_flag' set but not used [-Wunused-but-set-variable] register int nbr_flag; ^ layer2/RepSphere.c: In function 'RepSphereNew': layer2/RepSphere.c:2529:17: warning: variable 'ai2' set but not used [-Wunused-but-set-variable] AtomInfoType *ai2; ^ layer2/RepSphere.c: In function 'RepSphereRender': layer2/RepSphere.c:2003:6: warning: 'radius' may be used uninitialized in this function [-Wmaybe-uninitialized] RenderSphereMode_Points(G, I, info, radius, c); ^ layer2/RepSphere.c:2009:6: warning: 'n_quad_verts' may be used uninitialized in this function [-Wmaybe-uninitialized] RenderSphereMode_9(G, I, info, n_quad_verts, &v, radius, c); ^ layer2/RepSphere.c: In function 'RepSphereGenerateGeometryCullForSphere': layer2/RepSphere.c:2371:13: warning: 'v1[0]' may be used uninitialized in this function [-Wmaybe-uninitialized] v1[0] += v0[0] + vdw * sp->dot[q2][0]; ^ layer2/RepSphere.c: In function 'RepSphereNew': layer2/RepSphere.c:2534:26: warning: 'mf' may be used uninitialized in this function [-Wmaybe-uninitialized] int *map_flag = NULL, *mf; ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/RepRibbon.c -o build/temp.linux-x86_64-2.7/layer2/RepRibbon.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/RepNonbondedSphere.c -o build/temp.linux-x86_64-2.7/layer2/RepNonbondedSphere.o -ffast-math -funroll-loops -O3 -fcommon layer2/RepNonbondedSphere.c: In function 'RepNonbondedSphereRender': layer2/RepNonbondedSphere.c:197:25: warning: variable 'use_default_shader' set but not used [-Wunused-but-set-variable] short use_shader, use_default_shader, use_sphere_shader, generate_shader_cgo = 0, use_display_lists = 0; ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/RepNonbonded.c -o build/temp.linux-x86_64-2.7/layer2/RepNonbonded.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/RepMesh.c -o build/temp.linux-x86_64-2.7/layer2/RepMesh.o -ffast-math -funroll-loops -O3 -fcommon layer2/RepMesh.c: In function 'RepMeshRender': layer2/RepMesh.c:315:27: warning: 'origin' may be used uninitialized in this function [-Wmaybe-uninitialized] axis[2] = v[2] - origin[2]; ^ layer2/RepMesh.c: In function 'RepMeshNew': layer2/RepMesh.c:1175:8: warning: 'field' may be used uninitialized in this function [-Wmaybe-uninitialized] if (field) ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/RepLabel.c -o build/temp.linux-x86_64-2.7/layer2/RepLabel.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/RepEllipsoid.c -o build/temp.linux-x86_64-2.7/layer2/RepEllipsoid.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/RepDot.c -o build/temp.linux-x86_64-2.7/layer2/RepDot.o -ffast-math -funroll-loops -O3 -fcommon layer2/RepDot.c: In function 'RepDotRender': layer2/RepDot.c:195:33: warning: "/*" within comment [-Wcomment] /* if(normals) /* NORMALS do not get set for points ^ layer2/RepDot.c:220:6: warning: 'tmpCGO' may be used uninitialized in this function [-Wmaybe-uninitialized] CGOFreeWithoutVBOs(tmpCGO); ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/RepDistLabel.c -o build/temp.linux-x86_64-2.7/layer2/RepDistLabel.o -ffast-math -funroll-loops -O3 -fcommon layer2/RepDistLabel.c: In function 'RepDistLabelNew': layer2/RepDistLabel.c:404:24: warning: variable 'v6' set but not used [-Wunused-but-set-variable] float *v4, *v5, *v6; ^ layer2/RepDistLabel.c:404:19: warning: variable 'v5' set but not used [-Wunused-but-set-variable] float *v4, *v5, *v6; ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/RepDistDash.c -o build/temp.linux-x86_64-2.7/layer2/RepDistDash.o -ffast-math -funroll-loops -O3 -fcommon layer2/RepDistDash.c: In function 'RepDistDashNew': layer2/RepDistDash.c:351:29: warning: variable 'd1' set but not used [-Wunused-but-set-variable] float *v, *v1, *v2, d[3], d1[3]; ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/RepDihedral.c -o build/temp.linux-x86_64-2.7/layer2/RepDihedral.o -ffast-math -funroll-loops -O3 -fcommon layer2/RepDihedral.c: In function 'RepDihedralNew': layer2/RepDihedral.c:527:15: warning: variable 'mod_pos' set but not used [-Wunused-but-set-variable] float mod_pos; ^ layer2/RepDihedral.c:383:37: warning: variable 'v6' set but not used [-Wunused-but-set-variable] float *v1, *v2, *v3, *v4, *v5, *v6; ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/RepCylBond.c -o build/temp.linux-x86_64-2.7/layer2/RepCylBond.o -ffast-math -funroll-loops -O3 -fcommon layer2/RepCylBond.c: In function 'RepCylBondPopulateAdjacentAtoms': layer2/RepCylBond.c:1383:25: warning: variable 'h_scale' set but not used [-Wunused-but-set-variable] float radius, transp, h_scale; ^ layer2/RepCylBond.c:1383:17: warning: variable 'transp' set but not used [-Wunused-but-set-variable] float radius, transp, h_scale; ^ layer2/RepCylBond.c:1383:9: warning: variable 'radius' set but not used [-Wunused-but-set-variable] float radius, transp, h_scale; ^ layer2/RepCylBond.c:1380:10: warning: variable 'ord' set but not used [-Wunused-but-set-variable] int a, ord, a1, a2, stick_color, c1, c2, s1, s2, half_bonds, hide_long = false; ^ layer2/RepCylBond.c: In function 'RepCylBondNew': layer2/RepCylBond.c:1543:16: warning: variable 'v_size' set but not used [-Wunused-but-set-variable] unsigned int v_size, vr_size; ^ layer2/RepCylBond.c:1536:7: warning: variable 'stick_round_nub' set but not used [-Wunused-but-set-variable] int stick_round_nub; ^ layer2/RepCylBond.c: At top level: layer2/RepCylBond.c:2363:13: warning: 'subdivide' defined but not used [-Wunused-function] static void subdivide(int n, float *x, float *y) ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/RepCartoon.c -o build/temp.linux-x86_64-2.7/layer2/RepCartoon.o -ffast-math -funroll-loops -O3 -fcommon layer2/RepCartoon.c: In function 'do_ring': layer2/RepCartoon.c:282:7: warning: variable 'cartoon_color' set but not used [-Wunused-but-set-variable] int cartoon_color; ^ layer2/RepCartoon.c: In function 'nuc_acid': layer2/RepCartoon.c:1497:22: warning: variable 'v_n' set but not used [-Wunused-but-set-variable] float *v_o, *v_c, *v_n, t0[3]; ^ layer2/RepCartoon.c: In function 'GenerateRepCartoonCGO': layer2/RepCartoon.c:1662:31: warning: variable 'ring_finder_eff' set but not used [-Wunused-but-set-variable] int ring_mode, ring_finder, ring_finder_eff; ^ layer2/RepCartoon.c: In function 'RepCartoonNew': layer2/RepCartoon.c:2889:9: warning: variable 'alpha' set but not used [-Wunused-but-set-variable] float alpha; ^ layer2/RepCartoon.c:2876:7: warning: variable 'skip_to' set but not used [-Wunused-but-set-variable] int skip_to; ^ layer2/RepCartoon.c:2865:7: warning: variable 'highlight_color' set but not used [-Wunused-but-set-variable] int highlight_color; ^ layer2/RepCartoon.c:2861:7: warning: variable 'cartoon_debug' set but not used [-Wunused-but-set-variable] int cartoon_debug; ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/RepAngle.c -o build/temp.linux-x86_64-2.7/layer2/RepAngle.o -ffast-math -funroll-loops -O3 -fcommon layer2/RepAngle.c: In function 'RepAngleNew': layer2/RepAngle.c:453:15: warning: variable 'mod_pos' set but not used [-Wunused-but-set-variable] float mod_pos; ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/ObjectVolume.c -o build/temp.linux-x86_64-2.7/layer2/ObjectVolume.o -ffast-math -funroll-loops -O3 -fcommon layer2/ObjectVolume.c: In function 'ObjectVolumeNewFromPyList': layer2/ObjectVolume.c:269:7: warning: variable 'll' set but not used [-Wunused-but-set-variable] int ll; ^ layer2/ObjectVolume.c: In function 'ObjectVolumeFree': layer2/ObjectVolume.c:341:9: warning: unused variable 'i' [-Wunused-variable] int a,i; ^ layer2/ObjectVolume.c: In function 'ObjectVolumeUpdate': layer2/ObjectVolume.c:451:50: warning: statement with no effect [-Wunused-value] a, vs->RefreshFlag, vs->ResurfaceFlag ENDFD(G); ^ layer2/ObjectVolume.c:474:9: warning: suggest parentheses around '&&' within '||' [-Wparentheses] && vs->Ramp[5 * (vs->RampSize - 1)] == 359.f) { ^ layer2/ObjectVolume.c:515:26: warning: variable 'max_ext' set but not used [-Wunused-but-set-variable] float *min_ext, *max_ext; ^ layer2/ObjectVolume.c:515:16: warning: variable 'min_ext' set but not used [-Wunused-but-set-variable] float *min_ext, *max_ext; ^ layer2/ObjectVolume.c:569:39: warning: pointer targets in passing argument 2 of 'FieldNew' differ in signedness [-Wpointer-sign] vs->carvemask = FieldNew(G, vs->dim, 3, sizeof(GLubyte), cFieldOther); ^ In file included from layer0/Isosurf.h:24:0, from layer2/ObjectMap.h:24, from layer2/ObjectVolume.h:19, from layer2/ObjectVolume.c:26: layer0/Field.h:65:9: note: expected 'int *' but argument is of type 'unsigned int *' CField *FieldNew(PyMOLGlobals * G, int *dim, int n_dim, unsigned int base_size, int type); ^ layer2/ObjectVolume.c: In function 'ObjectVolumeRender': layer2/ObjectVolume.c:924:89: warning: suggest parentheses around '&&' within '||' [-Wparentheses] CShaderPrg_Set1f(shaderPrg, "fogIsSolidColor", bg_gradient || bg_image_filename && bg_image_filename[0] ? 0.f : 1.f); ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/ObjectSurface.c -o build/temp.linux-x86_64-2.7/layer2/ObjectSurface.o -ffast-math -funroll-loops -O3 -fcommon layer2/ObjectSurface.c: In function 'ObjectSurfaceUpdate': layer2/ObjectSurface.c:498:7: warning: variable 'ok' set but not used [-Wunused-but-set-variable] int ok = true; ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/ObjectSlice.c -o build/temp.linux-x86_64-2.7/layer2/ObjectSlice.o -ffast-math -funroll-loops -O3 -fcommon layer2/ObjectSlice.c: In function 'ObjectSliceStateFromPyList': layer2/ObjectSlice.c:103:7: warning: variable 'll' set but not used [-Wunused-but-set-variable] int ll; ^ layer2/ObjectSlice.c: In function 'ObjectSliceNewFromPyList': layer2/ObjectSlice.c:172:7: warning: variable 'll' set but not used [-Wunused-but-set-variable] int ll; ^ layer2/ObjectSlice.c: In function 'ObjectSliceUpdate': layer2/ObjectSlice.c:709:7: warning: variable 'ok' set but not used [-Wunused-but-set-variable] int ok = true; ^ layer2/ObjectSlice.c: In function 'GenerateOutlineOfSlice': layer2/ObjectSlice.c:1120:5: warning: 'origin' may be used uninitialized in this function [-Wmaybe-uninitialized] CGOSphere(cgo, origin, 1.f); ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/ObjectMolecule2.c -o build/temp.linux-x86_64-2.7/layer2/ObjectMolecule2.o -ffast-math -funroll-loops -O3 -fcommon layer2/ObjectMolecule2.c: In function 'ObjectMoleculePDBStr2CoordSet': layer2/ObjectMolecule2.c:1793:7: warning: variable 'have_conect' set but not used [-Wunused-but-set-variable] int have_conect = false; ^ layer2/ObjectMolecule2.c:1792:7: warning: variable 'seen_conect' set but not used [-Wunused-but-set-variable] int seen_conect = false; ^ layer2/ObjectMolecule2.c:1758:10: warning: unused variable 'b' [-Wunused-variable] int a, b, c; ^ layer2/ObjectMolecule2.c: In function 'ObjectMoleculeNewFromPyList': layer2/ObjectMolecule2.c:3702:7: warning: variable 'll' set but not used [-Wunused-but-set-variable] int ll; ^ In file included from layer0/OOMac.h:22:0, from layer2/ObjectMolecule2.c:26: layer2/ObjectMolecule2.c: In function 'ObjectMoleculeSort': layer0/MemoryDebug.h:137:33: warning: 'dAtmToIdx' may be used uninitialized in this function [-Wmaybe-uninitialized] #define VLAFreeP(ptr) {if(ptr) {VLAFree(ptr);ptr=NULL;}} ^ layer2/ObjectMolecule2.c:4328:8: note: 'dAtmToIdx' was declared here int *dAtmToIdx; ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/ObjectMolecule.c -o build/temp.linux-x86_64-2.7/layer2/ObjectMolecule.o -ffast-math -funroll-loops -O3 -fcommon layer2/ObjectMolecule.c: In function 'ObjectMoleculeFixSeleHydrogens': layer2/ObjectMolecule.c:731:13: warning: variable 'cs' set but not used [-Wunused-but-set-variable] CoordSet *cs; ^ layer2/ObjectMolecule.c: In function 'ObjectMoleculeLoadTRJFile': layer2/ObjectMolecule.c:886:7: warning: variable 'ok' set but not used [-Wunused-but-set-variable] int ok = true; ^ layer2/ObjectMolecule.c: In function 'ObjectMoleculeLoadPMOFile': layer2/ObjectMolecule.c:2855:7: warning: variable 'ok' set but not used [-Wunused-but-set-variable] int ok = true; ^ layer2/ObjectMolecule.c: In function 'ObjectMoleculeRenderSele': layer2/ObjectMolecule.c:3290:51: warning: variable 'ai' set but not used [-Wunused-but-set-variable] register AtomInfoType *atInfo = I->AtomInfo, *ai; ^ layer2/ObjectMolecule.c: In function 'ObjectMoleculeLoadXYZFile': layer2/ObjectMolecule.c:3881:7: warning: variable 'ok' set but not used [-Wunused-but-set-variable] int ok = true; ^ layer2/ObjectMolecule.c: In function 'ObjectMoleculeAttach': layer2/ObjectMolecule.c:4477:10: warning: variable 'nn' set but not used [-Wunused-but-set-variable] int n, nn; ^ layer2/ObjectMolecule.c: In function 'ObjectMoleculeFindOpenValenceVector': layer2/ObjectMolecule.c:4700:22: warning: variable 'ai1' set but not used [-Wunused-but-set-variable] AtomInfoType *ai, *ai1; ^ layer2/ObjectMolecule.c: In function 'ObjectMoleculeCreateSpheroid': layer2/ObjectMolecule.c:4881:10: warning: variable 'spl' set but not used [-Wunused-but-set-variable] float *spl; ^ layer2/ObjectMolecule.c: In function 'ObjectMoleculeGuessValences': layer2/ObjectMolecule.c:6350:29: warning: variable 'bnd2' set but not used [-Wunused-but-set-variable] int bnd2[5]; ^ layer2/ObjectMolecule.c:6124:38: warning: variable 'c2_len' set but not used [-Wunused-but-set-variable] float c1_len = 0.0F, c2_len = 0.0F; ^ layer2/ObjectMolecule.c:6124:23: warning: variable 'c1_len' set but not used [-Wunused-but-set-variable] float c1_len = 0.0F, c2_len = 0.0F; ^ layer2/ObjectMolecule.c:6123:56: warning: variable 'c2_bd' set but not used [-Wunused-but-set-variable] int c1_at = -1, c2_at = -1, c1_bd = 0, c2_bd = 0; ^ layer2/ObjectMolecule.c:6123:45: warning: variable 'c1_bd' set but not used [-Wunused-but-set-variable] int c1_at = -1, c2_at = -1, c1_bd = 0, c2_bd = 0; ^ layer2/ObjectMolecule.c:6118:68: warning: variable 'o4_len' set but not used [-Wunused-but-set-variable] float o1_len = 0.0F, o2_len = 0.0F, o3_len = 0.0F, o4_len = 0.0F; ^ layer2/ObjectMolecule.c:6118:53: warning: variable 'o3_len' set but not used [-Wunused-but-set-variable] float o1_len = 0.0F, o2_len = 0.0F, o3_len = 0.0F, o4_len = 0.0F; ^ layer2/ObjectMolecule.c: In function 'ObjectMoleculeMOL2SetFormalCharges': layer2/ObjectMolecule.c:8969:46: warning: variable 'n' set but not used [-Wunused-but-set-variable] int at, fcharge = 0, isProtein = 0, k, n; ^ layer2/ObjectMolecule.c: In function 'ObjectMoleculeMOL2Str2CoordSet': layer2/ObjectMolecule.c:9368:38: warning: variable 'resv_flag' set but not used [-Wunused-but-set-variable] int chain_flag, resn_flag, resv_flag; ^ layer2/ObjectMolecule.c: In function 'ObjectMoleculeInvalidateAtomType': layer2/ObjectMolecule.c:12194:16: warning: variable 'a' set but not used [-Wunused-but-set-variable] int ai, atm, a; ^ In file included from layer0/OOMac.h:22:0, from layer2/ObjectMolecule.c:25: layer2/ObjectMolecule.c: In function 'ObjectMoleculeLoadRSTFile': layer0/MemoryDebug.h:182:15: warning: 'buffer' may be used uninitialized in this function [-Wmaybe-uninitialized] #define mfree free ^ layer2/ObjectMolecule.c:1280:9: note: 'buffer' was declared here char *buffer, *p; ^ layer2/ObjectMolecule.c: In function 'ObjectMoleculeMerge': layer2/ObjectMolecule.c:9993:16: warning: 'i2a' may be used uninitialized in this function [-Wmaybe-uninitialized] cs->IdxToAtm = i2a; ^ layer2/ObjectMolecule.c:9818:7: warning: 'nAt' may be used uninitialized in this function [-Wmaybe-uninitialized] int nAt, nBd, nBond; ^ layer2/ObjectMolecule.c: In function 'ObjectMoleculeAddSeleHydrogens': layer2/ObjectMolecule.c:4091:16: warning: 'cs' may be used uninitialized in this function [-Wmaybe-uninitialized] if(cs->fFree) ^ layer2/ObjectMolecule.c: In function 'ObjectMoleculeFillOpenValences': layer2/ObjectMolecule.c:4620:9: warning: 'cs' may be used uninitialized in this function [-Wmaybe-uninitialized] cs->fFree(cs); ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/ObjectMesh.c -o build/temp.linux-x86_64-2.7/layer2/ObjectMesh.o -ffast-math -funroll-loops -O3 -fcommon layer2/ObjectMesh.c: In function 'ObjectMeshNewFromPyList': layer2/ObjectMesh.c:231:7: warning: variable 'll' set but not used [-Wunused-but-set-variable] int ll; ^ layer2/ObjectMesh.c: In function 'ObjectMeshUpdate': layer2/ObjectMesh.c:604:7: warning: variable 'ok' set but not used [-Wunused-but-set-variable] int ok = true; ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/ObjectMap.c -o build/temp.linux-x86_64-2.7/layer2/ObjectMap.o -ffast-math -funroll-loops -O3 -fcommon In file included from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1788:0, from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from layer2/ObjectMap.c:45: /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ layer2/ObjectMap.c: In function 'ObjectMapStateTrim': layer2/ObjectMap.c:480:7: warning: variable 'max' set but not used [-Wunused-but-set-variable] int max[3]; ^ layer2/ObjectMap.c: In function 'ObjectMapStateInterpolate': layer2/ObjectMap.c:1110:10: warning: variable 'out' set but not used [-Wunused-but-set-variable] float *out; ^ layer2/ObjectMap.c: In function 'ObjectMapNewFromPyList': layer2/ObjectMap.c:1589:7: warning: variable 'll' set but not used [-Wunused-but-set-variable] int ll; ^ layer2/ObjectMap.c: In function 'ObjectMapCCP4StrToMap': layer2/ObjectMap.c:2727:41: warning: passing argument 2 of 'UtilNCopy' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] UtilNCopy(ms->Symmetry->SpaceGroup, space_group_numbers[ispg], WordLength); ^ In file included from layer2/ObjectMap.c:41:0: layer0/Util.h:34:6: note: expected 'char *' but argument is of type 'const char *' void UtilNCopy(char *dst, char *src, ov_size n); /* up to N-1 chars */ ^ layer2/ObjectMap.c:2470:14: warning: variable 'xref' set but not used [-Wunused-but-set-variable] int cc[3], xref[3]; ^ layer2/ObjectMap.c: In function 'ObjectMapLoadCCP4': layer2/ObjectMap.c:4593:7: warning: variable 'ok' set but not used [-Wunused-but-set-variable] int ok = true; ^ layer2/ObjectMap.c: In function 'ObjectMapLoadPHI': layer2/ObjectMap.c:4764:7: warning: variable 'ok' set but not used [-Wunused-but-set-variable] int ok = true; ^ layer2/ObjectMap.c: In function 'ObjectMapLoadDXFile': layer2/ObjectMap.c:5119:7: warning: variable 'ok' set but not used [-Wunused-but-set-variable] int ok = true; ^ layer2/ObjectMap.c: In function 'ObjectMapLoadACNTFile': layer2/ObjectMap.c:5367:7: warning: variable 'ok' set but not used [-Wunused-but-set-variable] int ok = true; ^ layer2/ObjectMap.c: In function 'ObjectMapLoadFLDFile': layer2/ObjectMap.c:5420:7: warning: variable 'ok' set but not used [-Wunused-but-set-variable] int ok = true; ^ In file included from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:27:0, from layer2/ObjectMap.c:45: layer2/ObjectMap.c: At top level: /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1448:1: warning: '_import_array' defined but not used [-Wunused-function] _import_array(void) ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/ObjectGroup.c -o build/temp.linux-x86_64-2.7/layer2/ObjectGroup.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/ObjectGadgetRamp.c -o build/temp.linux-x86_64-2.7/layer2/ObjectGadgetRamp.o -ffast-math -funroll-loops -O3 -fcommon layer2/ObjectGadgetRamp.c: In function 'ObjectGadgetRampUpdateCGO': layer2/ObjectGadgetRamp.c:651:10: warning: variable 'p' set but not used [-Wunused-but-set-variable] float *p; ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/ObjectGadget.c -o build/temp.linux-x86_64-2.7/layer2/ObjectGadget.o -ffast-math -funroll-loops -O3 -fcommon layer2/ObjectGadget.c: In function 'ObjectGadgetInitFromPyList': layer2/ObjectGadget.c:305:7: warning: variable 'll' set but not used [-Wunused-but-set-variable] int ll; ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/ObjectDist.c -o build/temp.linux-x86_64-2.7/layer2/ObjectDist.o -ffast-math -funroll-loops -O3 -fcommon layer2/ObjectDist.c: In function 'ObjectDistGetDistSetFromM4XBond': layer2/ObjectDist.c:187:25: warning: variable 'dist' set but not used [-Wunused-but-set-variable] float *vv0, *vv1, dist; ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/ObjectCallback.c -o build/temp.linux-x86_64-2.7/layer2/ObjectCallback.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/ObjectCGO.c -o build/temp.linux-x86_64-2.7/layer2/ObjectCGO.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/ObjectAlignment.c -o build/temp.linux-x86_64-2.7/layer2/ObjectAlignment.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/GadgetSet.c -o build/temp.linux-x86_64-2.7/layer2/GadgetSet.o -ffast-math -funroll-loops -O3 -fcommon layer2/GadgetSet.c: In function 'GadgetSetFromPyList': layer2/GadgetSet.c:93:7: warning: variable 'll' set but not used [-Wunused-but-set-variable] int ll; ^ layer2/GadgetSet.c: In function 'GadgetSetRender': layer2/GadgetSet.c:303:13: warning: variable 'ok' set but not used [-Wunused-but-set-variable] int ok = true; ^ layer2/GadgetSet.c:290:9: warning: variable 'use_shader' set but not used [-Wunused-but-set-variable] short use_shader; ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/DistSet.c -o build/temp.linux-x86_64-2.7/layer2/DistSet.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/CoordSet.c -o build/temp.linux-x86_64-2.7/layer2/CoordSet.o -ffast-math -funroll-loops -O3 -fcommon layer2/CoordSet.c: In function 'CoordSetAtomToChemPyAtom': layer2/CoordSet.c:1021:7: warning: variable 'ok' set but not used [-Wunused-but-set-variable] int ok = true; ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/AtomInfo.c -o build/temp.linux-x86_64-2.7/layer2/AtomInfo.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer3/Selector.c -o build/temp.linux-x86_64-2.7/layer3/Selector.o -ffast-math -funroll-loops -O3 -fcommon layer3/Selector.c: In function 'SelectorGetSpacialMapFromSeleCoord': layer3/Selector.c:1491:23: warning: variable 'ai' set but not used [-Wunused-but-set-variable] AtomInfoType *ai; ^ layer3/Selector.c: In function 'SelectorAssignSS': layer3/Selector.c:2089:11: warning: variable 'c' set but not used [-Wunused-but-set-variable] int c, i, h, k, l; ^ layer3/Selector.c: In function 'SelectorGetPairIndices': layer3/Selector.c:3563:23: warning: variable 'ai2' set but not used [-Wunused-but-set-variable] AtomInfoType *ai1, *ai2; ^ layer3/Selector.c:3563:17: warning: variable 'ai1' set but not used [-Wunused-but-set-variable] AtomInfoType *ai1, *ai2; ^ layer3/Selector.c: In function 'SelectorMapMaskVDW': layer3/Selector.c:5356:11: warning: variable 'n2' set but not used [-Wunused-but-set-variable] int n1, n2; ^ layer3/Selector.c: In function 'SelectorSelect0': layer3/Selector.c:8623:15: warning: variable 's' set but not used [-Wunused-but-set-variable] int at, s; ^ layer3/Selector.c:8669:18: warning: suggest parentheses around '&&' within '||' [-Wparentheses] b > 2 && b < 5 || ^ layer3/Selector.c:8671:18: warning: suggest parentheses around '&&' within '||' [-Wparentheses] b > 18 && b < 32 || ^ layer3/Selector.c:8672:18: warning: suggest parentheses around '&&' within '||' [-Wparentheses] b > 36 && b < 51 || ^ layer3/Selector.c:8673:18: warning: suggest parentheses around '&&' within '||' [-Wparentheses] b > 54 && b < 85 || ^ layer3/Selector.c: In function 'SelectorSelect1': layer3/Selector.c:9091:11: warning: variable 'prevmodel' set but not used [-Wunused-but-set-variable] int prevmodel; ^ layer3/Selector.c:9153:11: warning: variable 'prevmodel' set but not used [-Wunused-but-set-variable] int prevmodel; ^ layer3/Selector.c: In function 'SelectorLogic1': layer3/Selector.c:10326:21: warning: variable 'ai' set but not used [-Wunused-but-set-variable] AtomInfoType *ai; ^ layer3/Selector.c: In function 'SelectorEvaluate': layer3/Selector.c:10858:19: warning: variable 'cc2' set but not used [-Wunused-but-set-variable] char *q, *cc1, *cc2; ^ layer3/Selector.c:10857:15: warning: variable 'opFlag2' set but not used [-Wunused-but-set-variable] int opFlag, opFlag2, maxLevel; ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer3/Seeker.c -o build/temp.linux-x86_64-2.7/layer3/Seeker.o -ffast-math -funroll-loops -O3 -fcommon layer3/Seeker.c: In function 'SeekerRefresh': layer3/Seeker.c:505:22: warning: variable 'not_selected' set but not used [-Wunused-but-set-variable] register int not_selected; ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer3/PlugIOManager.c -o build/temp.linux-x86_64-2.7/layer3/PlugIOManager.o -ffast-math -funroll-loops -O3 -fcommon layer3/PlugIOManager.c: In function 'PlugIOManagerLoadTraj': layer3/PlugIOManager.c:232:31: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if(stop > 0 && cnt >= stop || max > 0 && ncnt >= max) { ^ layer3/PlugIOManager.c: In function 'PlugIOManagerLoadVol': layer3/PlugIOManager.c:349:17: warning: variable 'isNew' set but not used [-Wunused-but-set-variable] int isNew = false; ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer3/Executive.c -o build/temp.linux-x86_64-2.7/layer3/Executive.o -ffast-math -funroll-loops -O3 -fcommon layer3/Executive.c: In function 'ExecutiveGetHistogram': layer3/Executive.c:4512:7: warning: too many arguments for format [-Wformat-extra-args] " GetHistogram-Error: wrong object type.", objName ENDFB(G); ^ In file included from layer0/OOMac.h:21:0, from layer3/Executive.c:24: layer3/Executive.c: In function 'ExecutiveSetSymmetry': layer3/Executive.c:5899:19: warning: assignment makes integer from pointer without a cast [-Wint-conversion] ok_assert(1, ok = symmetry); ^ layer0/Err.h:32:31: note: in definition of macro 'ok_assert' #define ok_assert(x, c) {if(!(c)) ok_raise(x);} ^ layer3/Executive.c: In function 'ExecutiveMapSet': layer3/Executive.c:6547:21: warning: variable 'tmp' set but not used [-Wunused-but-set-variable] float tmp[3]; ^ layer3/Executive.c: In function 'ExecutiveSculptIterate': layer3/Executive.c:7022:7: warning: variable 'ok' set but not used [-Wunused-but-set-variable] int ok = true; ^ layer3/Executive.c: In function 'ExecutiveRemoveAtoms': layer3/Executive.c:9382:7: warning: variable 'flag' set but not used [-Wunused-but-set-variable] int flag = false; ^ layer3/Executive.c: In function 'ExecutiveIterateList': layer3/Executive.c:10699:14: warning: variable 'cs' set but not used [-Wunused-but-set-variable] CoordSet *cs = NULL; ^ layer3/Executive.c: In function 'ExecutiveCenter': layer3/Executive.c:13688:23: warning: variable 'df' set but not used [-Wunused-but-set-variable] float mn[3], mx[3], df[3]; ^ layer3/Executive.c: In function 'ExecutiveRelease': layer3/Executive.c:15726:7: warning: variable 'n' set but not used [-Wunused-but-set-variable] int n; ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer3/Editor.c -o build/temp.linux-x86_64-2.7/layer3/Editor.o -ffast-math -funroll-loops -O3 -fcommon layer3/Editor.c: In function 'EditorDrawDihedral': layer3/Editor.c:113:22: warning: variable 'sele3' set but not used [-Wunused-but-set-variable] int sele0, sele3; ^ layer3/Editor.c:113:15: warning: variable 'sele0' set but not used [-Wunused-but-set-variable] int sele0, sele3; ^ layer3/Editor.c: In function 'EditorAttach': layer3/Editor.c:934:7: warning: variable 'state' set but not used [-Wunused-but-set-variable] int state; ^ layer3/Editor.c: In function 'EditorReplace': layer3/Editor.c:1115:7: warning: variable 'state' set but not used [-Wunused-but-set-variable] int state; ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer4/PopUp.c -o build/temp.linux-x86_64-2.7/layer4/PopUp.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer4/Menu.c -o build/temp.linux-x86_64-2.7/layer4/Menu.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer4/Export.c -o build/temp.linux-x86_64-2.7/layer4/Export.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer4/Cmd.c -o build/temp.linux-x86_64-2.7/layer4/Cmd.o -ffast-math -funroll-loops -O3 -fcommon layer4/Cmd.c: In function 'APIEnter': layer4/Cmd.c:131:5: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'long int' [-Wformat=] " APIEnter-DEBUG: as thread 0x%x.\n", PyThread_get_thread_ident() ^ layer4/Cmd.c: In function 'APIEnterBlocked': layer4/Cmd.c:166:5: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'long int' [-Wformat=] " APIEnterBlocked-DEBUG: as thread 0x%x.\n", PyThread_get_thread_ident() ^ layer4/Cmd.c: In function 'APIExit': layer4/Cmd.c:202:5: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'long int' [-Wformat=] " APIExit-DEBUG: as thread 0x%x.\n", PyThread_get_thread_ident() ^ layer4/Cmd.c: In function 'APIExitBlocked': layer4/Cmd.c:212:5: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'long int' [-Wformat=] " APIExitBlocked-DEBUG: as thread 0x%x.\n", PyThread_get_thread_ident() ^ layer4/Cmd.c: In function 'CmdAlign': layer4/Cmd.c:2182:9: warning: variable 'result' set but not used [-Wunused-but-set-variable] float result = -1.0; ^ layer4/Cmd.c: In function 'Cmd_New': layer4/Cmd.c:4172:11: warning: variable 'ok' set but not used [-Wunused-but-set-variable] int ok = true; ^ layer4/Cmd.c: In function 'CmdPNG': layer4/Cmd.c:5964:29: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if(ray || !G->HaveGUI && (!SceneGetCopyType(G) || width || height)) { ^ layer4/Cmd.c: In function 'CmdLoadObject': layer4/Cmd.c:6916:9: warning: variable 'isTmp' set but not used [-Wunused-but-set-variable] int isTmp; ^ layer4/Cmd.c: In function 'CmdLoadCoords': layer4/Cmd.c:7070:33: warning: logical not is only applied to the left hand side of comparison [-Wlogical-not-parentheses] if(!origObj || !origObj->type == cObjectMolecule) { ^ layer4/Cmd.c: In function 'CmdSetObjectColor': layer4/Cmd.c:7870:7: warning: variable 'result' set but not used [-Wunused-but-set-variable] int result = -1; ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer5/main.c -o build/temp.linux-x86_64-2.7/layer5/main.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer5/TestPyMOL.c -o build/temp.linux-x86_64-2.7/layer5/TestPyMOL.o -ffast-math -funroll-loops -O3 -fcommon layer5/TestPyMOL.c: In function 'get_st': layer5/TestPyMOL.c:76:25: warning: variable 'p' set but not used [-Wunused-but-set-variable] char *result = NULL, *p; ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer5/PyMOL.c -o build/temp.linux-x86_64-2.7/layer5/PyMOL.o -ffast-math -funroll-loops -O3 -fcommon layer5/PyMOL.c: In function 'PyMOL_CmdGetNames': layer5/PyMOL.c:4588:15: warning: variable 'arg' set but not used [-Wunused-but-set-variable] char *res, *arg; ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c modules/cealign/src/ccealignmodule.cpp -o build/temp.linux-x86_64-2.7/modules/cealign/src/ccealignmodule.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c build/generated/ShaderText.c -o build/temp.linux-x86_64-2.7/build/generated/ShaderText.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o -ffast-math -funroll-loops -O3 -fcommon In file included from contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c:57:0: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'get_pte_idx_from_string' defined but not used [-Wunused-function] static int get_pte_idx_from_string(const char *label) { ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c: In function 'vtf_parse_atom': contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:234:21: warning: format '%s' expects argument of type 'char *', but argument 3 has type 'char (*)[16]' [-Wformat=] if (sscanf(s, "%16s %n", &atom.name, &n) < 1) { ^ contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:243:21: warning: format '%s' expects argument of type 'char *', but argument 3 has type 'char (*)[16]' [-Wformat=] if (sscanf(s, "%16s %n", &atom.type, &n) < 1) { ^ contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:269:16: warning: format '%s' expects argument of type 'char *', but argument 3 has type 'char (*)[8]' [-Wformat=] if (sscanf(s, "%8s %n", &atom.resname, &n) < 1) { ^ contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:284:21: warning: format '%s' expects argument of type 'char *', but argument 3 has type 'char (*)[8]' [-Wformat=] if (sscanf(s, "%8s %n", &atom.segid, &n) < 1) { ^ contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:293:21: warning: format '%s' expects argument of type 'char *', but argument 3 has type 'char (*)[2]' [-Wformat=] if (sscanf(s, "%2s %n", &atom.insertion, &n) < 1) { ^ contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:305:16: warning: format '%s' expects argument of type 'char *', but argument 3 has type 'char (*)[2]' [-Wformat=] if (sscanf(s, "%2s %n", &atom.chain, &n) < 1) { ^ contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:339:16: warning: format '%s' expects argument of type 'char *', but argument 3 has type 'char (*)[2]' [-Wformat=] if (sscanf(s, "%2s %n", &atom.altloc, &n) < 1) { ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o -ffast-math -funroll-loops -O3 -fcommon In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:48:0: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'get_pte_idx_from_string' defined but not used [-Wunused-function] static int get_pte_idx_from_string(const char *label) { ^ contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c: In function 'read_vaspxml_structure': contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:140:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:145:9: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c: In function 'open_vaspxml_read': contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:87:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:93:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o -ffast-math -funroll-loops -O3 -fcommon In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:41:0: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'get_pte_idx_from_string' defined but not used [-Wunused-function] static int get_pte_idx_from_string(const char *label) { ^ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function 'read_vaspxdatcar_timestep': contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:284:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function 'read_vaspxdatcar_structure': contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:229:27: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < 4; ++i) fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:234:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:238:32: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < 2; ++i) fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:253:44: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < 10 - data->version; ++i) fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function 'open_vaspxdatcar_read': contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:90:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, poscar); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:93:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, poscar); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:98:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, poscar); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:112:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, poscar); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:122:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, poscar); ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o -ffast-math -funroll-loops -O3 -fcommon In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:41:0: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'get_pte_idx_from_string' defined but not used [-Wunused-function] static int get_pte_idx_from_string(const char *label) { ^ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function 'read_vaspposcar_timestep': contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:232:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:237:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:246:43: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < data->version - 2; ++i) fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:249:35: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] if (tolower(lineptr[0]) == 's') fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:256:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function 'read_vaspposcar_structure': contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:195:42: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < data->version + 3; ++i) fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:198:34: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] if (tolower(lineptr[0]) == 's') fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:203:4: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function 'open_vaspposcar_read': contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:70:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:74:27: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < 5; ++i) fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:87:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o -ffast-math -funroll-loops -O3 -fcommon In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:42:0: contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:111:13: warning: 'vasp_timestep_unitcell' defined but not used [-Wunused-function] static void vasp_timestep_unitcell(molfile_timestep_t *ts, vasp_plugindata_t *data) ^ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function 'read_vaspparchg_data': contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:239:60: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (n = 0; n < data->numatoms + data->version + 5; ++n) fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function 'read_vaspparchg_metadata': contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:151:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function 'open_vaspparchg_read': contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:72:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:76:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:82:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:93:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:104:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:132:44: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < data->numatoms + 2; ++i) fgets(lineptr, LINESIZE, data->file); ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o -ffast-math -funroll-loops -O3 -fcommon In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:41:0: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'get_pte_idx_from_string' defined but not used [-Wunused-function] static int get_pte_idx_from_string(const char *label) { ^ contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function 'read_vaspoutcar_timestep': contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:240:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:243:2: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function 'read_vaspoutcar_structure': contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:205:9: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function 'open_vaspoutcar_read': contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:88:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o -ffast-math -funroll-loops -O3 -fcommon In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:42:0: contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:111:13: warning: 'vasp_timestep_unitcell' defined but not used [-Wunused-function] static void vasp_timestep_unitcell(molfile_timestep_t *ts, vasp_plugindata_t *data) ^ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function 'read_vaspchgcar_data': contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:238:60: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (n = 0; n < data->numatoms + data->version + 5; ++n) fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:283:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function 'read_vaspchgcar_metadata': contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:151:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function 'open_vaspchgcar_read': contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:72:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:76:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:82:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:93:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:104:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:132:44: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < data->numatoms + 2; ++i) fgets(lineptr, LINESIZE, data->file); ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c: In function 'open_rst_read': contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:43:11: warning: variable 'timesteprst' set but not used [-Wunused-but-set-variable] double timesteprst; ^ contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:57:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(title, 82, fd); ^ contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:60:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 82, fd); ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c: In function 'write_psf_structure': contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c:652:19: warning: variable 'atomname' set but not used [-Wunused-but-set-variable] const char *atomname; ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/fortread.h:28:0, from contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c:29: contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c: At top level: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'swap2_unaligned' defined but not used [-Wunused-function] static void swap2_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: 'swap4_unaligned' defined but not used [-Wunused-function] static void swap4_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: 'swap8_unaligned' defined but not used [-Wunused-function] static void swap8_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: 'swap2_aligned' defined but not used [-Wunused-function] static void swap2_aligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: 'swap8_aligned' defined but not used [-Wunused-function] static void swap8_aligned(void *v, long ndata) { ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c:29:0: contrib/uiuc/plugins/molfile_plugin/src/fortread.h:36:12: warning: 'fort_eat_recmark' defined but not used [-Wunused-function] static int fort_eat_recmark(FILE *ifp, int recmarklen) { ^ contrib/uiuc/plugins/molfile_plugin/src/fortread.h:55:12: warning: 'fort_get_endian_reclen' defined but not used [-Wunused-function] static int fort_get_endian_reclen(int reclen, int word0, int word1, ^ contrib/uiuc/plugins/molfile_plugin/src/fortread.h:103:12: warning: 'fortread_4' defined but not used [-Wunused-function] static int fortread_4(void *dest, int n, int swap, FILE *fd) { ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c: In function 'get_atom_radius': contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:166:16: warning: variable 'type' set but not used [-Wunused-but-set-variable] char *name, *type; ^ contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:166:9: warning: variable 'name' set but not used [-Wunused-but-set-variable] char *name, *type; ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o -ffast-math -funroll-loops -O3 -fcommon In file included from contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:33:0: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: 'get_pte_idx' defined but not used [-Wunused-function] static int get_pte_idx(const char *label) ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function 'open_namdbin_read': contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:70:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&filen, sizeof(namdbin_int32), 1, fd); ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function 'read_molden_rundata': contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:585:25: warning: variable 'hessian_data' set but not used [-Wunused-but-set-variable] molfile_qm_hessian_t *hessian_data; ^ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function 'get_basis': contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:828:36: warning: unused variable 's_coeff2' [-Wunused-variable] char s_expon[128], s_coeff1[128], s_coeff2[128]; ^ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:828:21: warning: unused variable 's_coeff1' [-Wunused-variable] char s_expon[128], s_coeff1[128], s_coeff2[128]; ^ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:828:7: warning: unused variable 's_expon' [-Wunused-variable] char s_expon[128], s_coeff1[128], s_coeff2[128]; ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:37:0: contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: At top level: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:95:20: warning: 'get_pte_label' defined but not used [-Wunused-function] static const char *get_pte_label(const int idx) ^ contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:102:14: warning: 'get_pte_mass' defined but not used [-Wunused-function] static float get_pte_mass(const int idx) ^ contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:109:14: warning: 'get_pte_vdw_radius' defined but not used [-Wunused-function] static float get_pte_vdw_radius(const int idx) ^ contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: 'get_pte_idx' defined but not used [-Wunused-function] static int get_pte_idx(const char *label) ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:38:0: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:706:12: warning: 'symmetry_expand' defined but not used [-Wunused-function] static int symmetry_expand(qm_atom_t **atoms, int numunique, int natoms, ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1001:12: warning: 'have_keyline' defined but not used [-Wunused-function] static int have_keyline(FILE *file, const char *keystring1, ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1072:13: warning: 'thisline' defined but not used [-Wunused-function] static void thisline(FILE *file) { ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1092:13: warning: 'whereami' defined but not used [-Wunused-function] static void whereami(FILE *file) { ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:485:13: warning: 'replace_wavefunction' defined but not used [-Wunused-function] static void replace_wavefunction(qm_timestep_t *ts, int n) { ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:502:13: warning: 'del_wavefunction' defined but not used [-Wunused-function] static void del_wavefunction(qm_timestep_t *ts) { ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:580:13: warning: 'print_matrix4' defined but not used [-Wunused-function] static void print_matrix4(const float mat[16]) { ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function 'eatline': contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:835:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 1024, fd); ^ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function 'open_molden_read': contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:213:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(data->file, "%d", &natm); ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c: In function 'read_js_structure': contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:403:16: warning: unused variable 'bszmask' [-Wunused-variable] fio_size_t bszmask; ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/hash.h:37:0, from contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:87: contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c: At top level: contrib/uiuc/plugins/molfile_plugin/src/hash.c:183:21: warning: 'hash_delete' defined but not used [-Wunused-function] VMDEXTERNSTATIC int hash_delete(hash_t *tptr, const char *key) { ^ contrib/uiuc/plugins/molfile_plugin/src/hash.c:270:24: warning: 'hash_stats' defined but not used [-Wunused-function] VMDEXTERNSTATIC char * hash_stats(hash_t *tptr) { ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:88:0: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'swap2_unaligned' defined but not used [-Wunused-function] static void swap2_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: 'swap4_unaligned' defined but not used [-Wunused-function] static void swap4_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: 'swap8_unaligned' defined but not used [-Wunused-function] static void swap8_unaligned(void *v, long ndata) { ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/hash.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/hash.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'have_gamess': contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1101:8: warning: variable 'word' set but not used [-Wunused-but-set-variable] char word[3][BUFSIZ]; ^ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'get_basis_stats': contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:2258:8: warning: variable 'word' set but not used [-Wunused-but-set-variable] char word[7][BUFSIZ]; ^ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'get_wavefunction': contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:3561:8: warning: variable 'word' set but not used [-Wunused-but-set-variable] char word[6][BUFSIZ]; ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160:0: contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: At top level: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:890:12: warning: 'iswhiteline' defined but not used [-Wunused-function] static int iswhiteline(char *s) { ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:896:14: warning: 'strtoupper' defined but not used [-Wunused-function] static char *strtoupper(char *s) { ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1072:13: warning: 'thisline' defined but not used [-Wunused-function] static void thisline(FILE *file) { ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1092:13: warning: 'whereami' defined but not used [-Wunused-function] static void whereami(FILE *file) { ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:580:13: warning: 'print_matrix4' defined but not used [-Wunused-function] static void print_matrix4(const float mat[16]) { ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1023:12: warning: 'fpexpftoc' defined but not used [-Wunused-function] static int fpexpftoc(char *ftocstr) { ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:162:0: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:95:20: warning: 'get_pte_label' defined but not used [-Wunused-function] static const char *get_pte_label(const int idx) ^ contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:102:14: warning: 'get_pte_mass' defined but not used [-Wunused-function] static float get_pte_mass(const int idx) ^ contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:109:14: warning: 'get_pte_vdw_radius' defined but not used [-Wunused-function] static float get_pte_vdw_radius(const int idx) ^ contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: 'get_pte_idx' defined but not used [-Wunused-function] static int get_pte_idx(const char *label) ^ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:997:13: warning: 'print_input_data' defined but not used [-Wunused-function] static void print_input_data(qmdata_t *data) { ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160:0: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function 'eatline': contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:835:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 1024, fd); ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function 'read_dlpoly_timestep': contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:420:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(fbuffer, 1024, data->file); ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c: In function 'read_dcdheader': contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:261:3: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] (*NSET) = *((int *) (hdrbuf)); ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:51:0: contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c: At top level: contrib/uiuc/plugins/molfile_plugin/src/fastio.h:468:12: warning: 'fio_read_int32' defined but not used [-Wunused-function] static int fio_read_int32(fio_fd fd, int *i) { ^ contrib/uiuc/plugins/molfile_plugin/src/fastio.h:472:12: warning: 'fio_write_str' defined but not used [-Wunused-function] static int fio_write_str(fio_fd fd, const char *str) { ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:60:0: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'swap2_unaligned' defined but not used [-Wunused-function] static void swap2_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: 'swap2_aligned' defined but not used [-Wunused-function] static void swap2_aligned(void *v, long ndata) { ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c: In function 'write_crd_timestep': contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c:167:6: warning: 'lfdone' may be used uninitialized in this function [-Wmaybe-uninitialized] if (!lfdone) ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/corplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/carplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function 'read_car_timestep': contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:326:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:339:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:344:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:349:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:363:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:373:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function 'read_car_structure': contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:266:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:268:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:272:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:295:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:305:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function 'open_car_read': contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:169:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:179:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:182:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:210:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:213:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:224:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:226:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:230:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:234:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:245:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c: In function 'open_binpos_read': contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c:64:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(magicchar,sizeof(char),4,fd); ^ contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c:72:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&igarb,sizeof(int),1,fd); ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o -ffast-math -funroll-loops -O3 -fcommon In file included from contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c:43:0: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:706:12: warning: 'symmetry_expand' defined but not used [-Wunused-function] static int symmetry_expand(qm_atom_t **atoms, int numunique, int natoms, ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:830:13: warning: 'eatline' defined but not used [-Wunused-function] static void eatline(FILE * fd, int n) ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:841:13: warning: 'eatwhitelines' defined but not used [-Wunused-function] static void eatwhitelines(FILE *file) { ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:890:12: warning: 'iswhiteline' defined but not used [-Wunused-function] static int iswhiteline(char *s) { ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:896:14: warning: 'strtoupper' defined but not used [-Wunused-function] static char *strtoupper(char *s) { ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:957:12: warning: 'goto_keyline' defined but not used [-Wunused-function] static int goto_keyline(FILE *file, ...) { ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1001:12: warning: 'have_keyline' defined but not used [-Wunused-function] static int have_keyline(FILE *file, const char *keystring1, ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1072:13: warning: 'thisline' defined but not used [-Wunused-function] static void thisline(FILE *file) { ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1092:13: warning: 'whereami' defined but not used [-Wunused-function] static void whereami(FILE *file) { ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:433:18: warning: 'init_qmdata' defined but not used [-Wunused-function] static qmdata_t* init_qmdata(qmdata_t *data) { ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:466:27: warning: 'add_wavefunction' defined but not used [-Wunused-function] static qm_wavefunction_t* add_wavefunction(qm_timestep_t *ts) { ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:485:13: warning: 'replace_wavefunction' defined but not used [-Wunused-function] static void replace_wavefunction(qm_timestep_t *ts, int n) { ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:502:13: warning: 'del_wavefunction' defined but not used [-Wunused-function] static void del_wavefunction(qm_timestep_t *ts) { ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:535:13: warning: 'angular_momentum_expon' defined but not used [-Wunused-function] static void angular_momentum_expon(int *ang_mom_expon, ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:580:13: warning: 'print_matrix4' defined but not used [-Wunused-function] static void print_matrix4(const float mat[16]) { ^ contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1023:12: warning: 'fpexpftoc' defined but not used [-Wunused-function] static int fpexpftoc(char *ftocstr) { ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function 'void eatline(FILE*)': contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:234:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 1024, fd); // go on to next line ^ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function 'void* open_xsf_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:405:37: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 256, xsf->fd); ^ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:439:43: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 256, xsf->fd); ^ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:441:43: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 256, xsf->fd); ^ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:443:43: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 256, xsf->fd); ^ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:445:43: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 256, xsf->fd); ^ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:447:43: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 256, xsf->fd); ^ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:467:45: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 256, xsf->fd); ^ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:504:39: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 256, xsf->fd); ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:37:0: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At global scope: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'int get_pte_idx_from_string(const char*)' defined but not used [-Wunused-function] static int get_pte_idx_from_string(const char *label) { ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'int read_xbgf_timestep(void*, int, molfile_timestep_t*)': contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:288:37: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ^ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:297:37: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ^ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'int read_xbgf_bonds_aux(void*, int*, int**, int**, float**)': contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:365:37: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ^ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:387:35: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ^ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:395:41: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(nextline, LINESIZE, bgf->file); ^ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:455:41: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ^ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'int read_xbgf_structure(void*, int*, molfile_atom_t*)': contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:241:37: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ^ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:250:37: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ^ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'void* open_xbgf_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:72:30: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp: In function 'void* open_uhbd_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:90:22: warning: variable 'o' set but not used [-Wunused-but-set-variable] float orig[3], ra, o[3], s[3]; //xdelta[3], ydelta[3], zdelta[3]; ^ contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:90:28: warning: variable 's' set but not used [-Wunused-but-set-variable] float orig[3], ra, o[3], s[3]; //xdelta[3], ydelta[3], zdelta[3]; ^ contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp: In function 'int read_uhbd_data(void*, int, float*, float*)': contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:254:66: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (fread(datablock + z*xysize, sizeof(float), xysize, fd) != xysize) { ^ contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp: In function 'void* open_uhbd_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:102:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&headersize, sizeof(int), 1, fd); ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:47:0: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'void swap2_unaligned(void*, long int)' defined but not used [-Wunused-function] static void swap2_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: 'void swap8_unaligned(void*, long int)' defined but not used [-Wunused-function] static void swap8_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: 'void swap2_aligned(void*, long int)' defined but not used [-Wunused-function] static void swap2_aligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: 'void swap8_aligned(void*, long int)' defined but not used [-Wunused-function] static void swap8_aligned(void *v, long ndata) { ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp: In function 'int read_rawgraphics(void*, int*, const molfile_graphics_t**)': contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:96:28: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ^ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:104:28: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ^ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:119:30: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ^ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:131:32: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ^ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:153:30: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ^ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:162:30: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ^ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:171:30: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp: In function 'int read_spider_data(void*, int, float*, float*)': contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp:277:7: warning: unused variable 'x' [-Wunused-variable] int x, y, z, xsize, ysize, zsize, xysize, total; ^ contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp:277:10: warning: unused variable 'y' [-Wunused-variable] int x, y, z, xsize, ysize, zsize, xysize, total; ^ contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp:277:13: warning: unused variable 'z' [-Wunused-variable] int x, y, z, xsize, ysize, zsize, xysize, total; ^ contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp:286:49: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(datablock, total * sizeof(float), 1, fd); ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp:36:0: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'void swap2_unaligned(void*, long int)' defined but not used [-Wunused-function] static void swap2_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: 'void swap4_unaligned(void*, long int)' defined but not used [-Wunused-function] static void swap4_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: 'void swap8_unaligned(void*, long int)' defined but not used [-Wunused-function] static void swap8_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: 'void swap2_aligned(void*, long int)' defined but not used [-Wunused-function] static void swap2_aligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: 'void swap8_aligned(void*, long int)' defined but not used [-Wunused-function] static void swap8_aligned(void *v, long ndata) { ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/situsplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp: In function 'int read_plt_data(void*, int, float*, float*)': contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:143:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( fread(datablock, sizeof(float), ndata, fd) != ndata ) { ^ contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp: In function 'void* open_plt_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:69:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(intHeader, sizeof(int), 5, fd); ^ contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:82:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(floatHeader, sizeof(float), 6, fd); ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:42:0: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'void swap2_unaligned(void*, long int)' defined but not used [-Wunused-function] static void swap2_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: 'void swap4_unaligned(void*, long int)' defined but not used [-Wunused-function] static void swap4_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: 'void swap8_unaligned(void*, long int)' defined but not used [-Wunused-function] static void swap8_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: 'void swap2_aligned(void*, long int)' defined but not used [-Wunused-function] static void swap2_aligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: 'void swap8_aligned(void*, long int)' defined but not used [-Wunused-function] static void swap8_aligned(void *v, long ndata) { ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp: In function 'int read_pbeq_data(void*, int, float*, float*)': contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp:262:55: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long int' [-Wformat=] printf("pbeqplugin) offset: %d\n", ftell(fd)); ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp:53:0: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'void swap2_unaligned(void*, long int)' defined but not used [-Wunused-function] static void swap2_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: 'void swap4_unaligned(void*, long int)' defined but not used [-Wunused-function] static void swap4_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: 'void swap8_unaligned(void*, long int)' defined but not used [-Wunused-function] static void swap8_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: 'void swap2_aligned(void*, long int)' defined but not used [-Wunused-function] static void swap2_aligned(void *v, long ndata) { ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o -ffast-math -funroll-loops -O3 -fcommon In file included from contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp:24:0: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h: In member function 'int {anonymous}::ReadPARM::readparm(FILE*)': contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:435:53: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Charges[i]); ^ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:444:45: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Masses[i]); ^ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:510:48: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Rk[i]); ^ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:517:49: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Req[i]); ^ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:524:48: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Tk[i]); ^ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:531:49: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Teq[i]); ^ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:538:48: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Pk[i]); ^ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:545:48: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Pn[i]); ^ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:552:51: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Phase[i]); ^ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:559:51: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Solty[i]); ^ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:567:49: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Cn1[i]); ^ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:575:49: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Cn2[i]); ^ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:756:50: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->HB12[i]); ^ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:763:49: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->HB6[i]); ^ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:771:42: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &H[i]); ^ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:854:46: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] &prm->Box[0], &prm->Box[1], &prm->Box[2]); ^ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:869:40: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] &prm->Xcap, &prm->Ycap, &prm->Zcap); ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp: In function 'int read_parm7_structure(void*, int*, molfile_atom_t*)': contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:76:30: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, "%s\n", buf); // format ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:25:0: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_atoms(const char*, int, molfile_atom_t*, FILE*)': contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:202:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(buf, 85, file); ^ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_atype(const char*, int, molfile_atom_t*, FILE*)': contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:254:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(buf, 85, file); ^ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_resnames(const char*, int, char*, FILE*)': contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:272:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(buf, 85, file); ^ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_respointers(const char*, int, molfile_atom_t*, int, const char*, FILE*)': contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:286:28: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %d", &cur); ^ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'parmstruct* read_parm7_header(FILE*)': contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:365:25: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(sdum, 512, file); ^ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:379:46: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(prm->title, sizeof(prm->title), file); ^ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:407:36: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(sdum, sizeof(sdum), file); ^ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:422:36: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] &prm->Jparm, &prm->Nparm); ^ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:426:34: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] &prm->Natyp, &prm->Nphb); ^ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:429:49: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] &prm->IfBox, &prm->Nmxrs, &prm->IfCap); ^ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:431:36: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file,"%8d",&prm->Numextra); //BB ^ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int read_parm7_flag(FILE*, const char*, const char*)': contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:78:28: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, "%s\n", buf); ^ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:86:28: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, "%s\n", buf); ^ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:96:28: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, "%s\n", buf); ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function 'int read_mol2_timestep(void*, int, molfile_timestep_t*)': contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:275:38: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mol2->file); ^ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:289:38: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mol2->file); ^ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function 'int read_mol2_bonds_aux(void*, int*, int**, int**, float**)': contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:199:38: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mol2->file); ^ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:209:38: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mol2->file); ^ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function 'int read_mol2(void*, int*, molfile_atom_t*)': contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:127:38: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mol2->file); ^ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:138:38: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mol2->file); ^ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function 'void* open_mol2_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:74:30: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:81:28: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); // Read and ignore the mol_name ^ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:82:28: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); // Read the molecule info ^ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:91:28: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); // Read and ignore the mol_type ^ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:92:28: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); // Read the charge_type ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/mmcif.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mmcif.o -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/mmcif.cpp: In function 'int read_mmcif_timestep(void*, int, molfile_timestep_t*)': contrib/uiuc/plugins/molfile_plugin/src/mmcif.cpp:85:14: warning: unused variable 'data' [-Wunused-variable] mmcifdata *data = (mmcifdata *)mydata; ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/mmcif.cpp:64:0: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At global scope: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:95:20: warning: 'const char* get_pte_label(int)' defined but not used [-Wunused-function] static const char *get_pte_label(const int idx) ^ contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:102:14: warning: 'float get_pte_mass(int)' defined but not used [-Wunused-function] static float get_pte_mass(const int idx) ^ contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:109:14: warning: 'float get_pte_vdw_radius(int)' defined but not used [-Wunused-function] static float get_pte_vdw_radius(const int idx) ^ contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: 'int get_pte_idx(const char*)' defined but not used [-Wunused-function] static int get_pte_idx(const char *label) ^ contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'int get_pte_idx_from_string(const char*)' defined but not used [-Wunused-function] static int get_pte_idx_from_string(const char *label) { ^ contrib/uiuc/plugins/molfile_plugin/src/mmcif.cpp:98:14: warning: 'void* open_mmcif_write(const char*, const char*, int)' defined but not used [-Wunused-function] static void *open_mmcif_write(const char *filename, const char *filetype, ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function 'int count_mdf_bonds(const char*)': contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:135:7: warning: unused variable 'retval' [-Wunused-variable] int retval; ^ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function 'int read_mdf_bonds(void*, int*, int**, int**, float**, int**, int*, char***)': contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:280:37: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mdf->file); ^ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:299:39: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mdf->file); ^ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:321:37: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mdf->file); ^ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:359:39: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mdf->file); ^ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function 'int read_mdf_structure(void*, int*, molfile_atom_t*)': contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:225:37: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mdf->file); ^ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:243:39: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mdf->file); ^ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function 'void* open_mdf_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:166:30: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:178:30: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:185:32: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/hash.h:37:0, from contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:45: contrib/uiuc/plugins/molfile_plugin/src/hash.c: At global scope: contrib/uiuc/plugins/molfile_plugin/src/hash.c:183:21: warning: 'int hash_delete(hash_t*, const char*)' defined but not used [-Wunused-function] VMDEXTERNSTATIC int hash_delete(hash_t *tptr, const char *key) { ^ contrib/uiuc/plugins/molfile_plugin/src/hash.c:270:24: warning: 'char* hash_stats(hash_t*)' defined but not used [-Wunused-function] VMDEXTERNSTATIC char * hash_stats(hash_t *tptr) { ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/mapplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp: In function 'int {anonymous}::write_structure(void*, int, const molfile_atom_t*)': contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp:1883:9: warning: unused variable 'last_ctnumber' [-Wunused-variable] int last_ctnumber = -1; ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o -ffast-math -funroll-loops -O3 -fcommon In file included from contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp:30:0: contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h: In function 'int mdio_readline(md_file*, char*, int, int)': contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:426:22: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(buf, n, mf->f); ^ contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h: In function 'int xtc_3dfcoord(md_file*, float*, int*, float*)': contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:1816:25: warning: '*((void*)& maxint +4)' may be used uninitialized in this function [-Wmaybe-uninitialized] sizeint[1] = maxint[1] - minint[1]+1; ^ contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:1815:25: warning: 'maxint' may be used uninitialized in this function [-Wmaybe-uninitialized] sizeint[0] = maxint[0] - minint[0]+1; ^ contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:1861:28: warning: '*((void*)& minint +8)' may be used uninitialized in this function [-Wmaybe-uninitialized] thiscoord[2] += minint[2]; ^ contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:1860:28: warning: '*((void*)& minint +4)' may be used uninitialized in this function [-Wmaybe-uninitialized] thiscoord[1] += minint[1]; ^ contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:1859:28: warning: 'minint' may be used uninitialized in this function [-Wmaybe-uninitialized] thiscoord[0] += minint[0]; ^ contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:1830:75: warning: 'smallidx' may be used uninitialized in this function [-Wmaybe-uninitialized] smaller = xtc_magicints[FIRSTIDX > smallidx - 1 ? FIRSTIDX : smallidx - 1] / 2; ^ contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:1817:25: warning: '*((void*)& maxint +8)' may be used uninitialized in this function [-Wmaybe-uninitialized] sizeint[2] = maxint[2] - minint[2]+1; ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:48:0, from contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp:30: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'void swap2_unaligned(void*, long int)' defined but not used [-Wunused-function] static void swap2_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: 'void swap4_unaligned(void*, long int)' defined but not used [-Wunused-function] static void swap4_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: 'void swap8_unaligned(void*, long int)' defined but not used [-Wunused-function] static void swap8_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: 'void swap2_aligned(void*, long int)' defined but not used [-Wunused-function] static void swap2_aligned(void *v, long ndata) { ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp: In function 'void* open_grid_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp:84:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&dataBegin, sizeof(int), 1, fd); ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp:59:0: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'void swap2_unaligned(void*, long int)' defined but not used [-Wunused-function] static void swap2_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: 'void swap4_unaligned(void*, long int)' defined but not used [-Wunused-function] static void swap4_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: 'void swap8_unaligned(void*, long int)' defined but not used [-Wunused-function] static void swap8_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: 'void swap2_aligned(void*, long int)' defined but not used [-Wunused-function] static void swap2_aligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: 'void swap8_aligned(void*, long int)' defined but not used [-Wunused-function] static void swap8_aligned(void *v, long ndata) { ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp:60:0: contrib/uiuc/plugins/molfile_plugin/src/fortread.h:36:12: warning: 'int fort_eat_recmark(FILE*, int)' defined but not used [-Wunused-function] static int fort_eat_recmark(FILE *ifp, int recmarklen) { ^ contrib/uiuc/plugins/molfile_plugin/src/fortread.h:55:12: warning: 'int fort_get_endian_reclen(int, int, int, int*, int*)' defined but not used [-Wunused-function] static int fort_get_endian_reclen(int reclen, int word0, int word1, ^ contrib/uiuc/plugins/molfile_plugin/src/fortread.h:133:13: warning: 'void strnwscpy(char*, const char*, int)' defined but not used [-Wunused-function] static void strnwscpy(char *target, const char *source, const int len) { ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o -ffast-math -funroll-loops -O3 -fcommon In file included from contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp:51:0: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'void swap2_unaligned(void*, long int)' defined but not used [-Wunused-function] static void swap2_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: 'void swap4_unaligned(void*, long int)' defined but not used [-Wunused-function] static void swap4_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: 'void swap8_unaligned(void*, long int)' defined but not used [-Wunused-function] static void swap8_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: 'void swap2_aligned(void*, long int)' defined but not used [-Wunused-function] static void swap2_aligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: 'void swap8_aligned(void*, long int)' defined but not used [-Wunused-function] static void swap8_aligned(void *v, long ndata) { ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp: In function 'void line3(FILE*, GRASSP*)': contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:186:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(line3, 1, 80, infile); ^ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp: In function 'int read_rawgraphics(void*, int*, const molfile_graphics_t**)': contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:284:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] TRASH; ^ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:285:29: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(line, 1, 80, infile); ^ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:291:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] TRASH; ^ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:305:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] TRASH; ^ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:306:29: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(line, 1, 80, infile); ^ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:307:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] TRASH; ^ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:311:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] TRASH; ^ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:313:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] TRASH; ^ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:318:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] TRASH; ^ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:319:29: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(line, 1, 80, infile); ^ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:320:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] TRASH; ^ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:328:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] TRASH; ^ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:329:29: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(line, 1, 80, infile); ^ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:330:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] TRASH; ^ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:354:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] TRASH; ^ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:355:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(vertex, 3 * sizeof(float), nvert, infile); ^ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:356:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] TRASH; ^ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:357:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] TRASH; ^ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:358:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(access, 3 * sizeof(float), nvert, infile); ^ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:359:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] TRASH; ^ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:360:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] TRASH; ^ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:361:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(normal, 3 * sizeof(float), nvert, infile); ^ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:362:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] TRASH; ^ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:371:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] TRASH; ^ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:372:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(triangle, 3 * sizeof(int), ntriangles, infile); ^ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:373:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] TRASH; ^ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:374:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] TRASH; ^ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:375:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(properties, 3 * sizeof(float), nvert, infile); ^ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:394:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] TRASH; ^ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:395:60: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(striangle, sizeof(short), 3 * ntriangles, infile); ^ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:396:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] TRASH; ^ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:397:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] TRASH; ^ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:398:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(properties, sizeof(float), 3 * nvert, infile); ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:40:0: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'void swap2_unaligned(void*, long int)' defined but not used [-Wunused-function] static void swap2_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: 'void swap4_unaligned(void*, long int)' defined but not used [-Wunused-function] static void swap4_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: 'void swap8_unaligned(void*, long int)' defined but not used [-Wunused-function] static void swap8_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: 'void swap8_aligned(void*, long int)' defined but not used [-Wunused-function] static void swap8_aligned(void *v, long ndata) { ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp: In function 'void* open_fs4_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp:79:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&dataBegin, sizeof(int), 1, fd); ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp:47:0: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'void swap2_unaligned(void*, long int)' defined but not used [-Wunused-function] static void swap2_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: 'void swap4_unaligned(void*, long int)' defined but not used [-Wunused-function] static void swap4_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: 'void swap8_unaligned(void*, long int)' defined but not used [-Wunused-function] static void swap8_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: 'void swap2_aligned(void*, long int)' defined but not used [-Wunused-function] static void swap2_aligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: 'void swap8_aligned(void*, long int)' defined but not used [-Wunused-function] static void swap8_aligned(void *v, long ndata) { ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp:48:0: contrib/uiuc/plugins/molfile_plugin/src/fortread.h:36:12: warning: 'int fort_eat_recmark(FILE*, int)' defined but not used [-Wunused-function] static int fort_eat_recmark(FILE *ifp, int recmarklen) { ^ contrib/uiuc/plugins/molfile_plugin/src/fortread.h:55:12: warning: 'int fort_get_endian_reclen(int, int, int, int*, int*)' defined but not used [-Wunused-function] static int fort_get_endian_reclen(int reclen, int word0, int word1, ^ contrib/uiuc/plugins/molfile_plugin/src/fortread.h:133:13: warning: 'void strnwscpy(char*, const char*, int)' defined but not used [-Wunused-function] static void strnwscpy(char *target, const char *source, const int len) { ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp: In function 'int read_edm_data(void*, int, float*, float*)': contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:207:10: warning: unused variable 'l' [-Wunused-variable] int z, l, sentinel, convcnt; ^ contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:220:7: warning: unused variable 'leftover' [-Wunused-variable] int leftover = (nperslice - (nlines - 1) * 6); ^ contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:270:30: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 13, edm->fd); ^ contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp: In function 'void eatline(FILE*)': contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:44:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 1024, fd); // go on to next line ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dxplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In member function 'bool desres::molfile::Timekeys::init(const string&)': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:488:48: warning: format '%d' expects argument of type 'int', but argument 2 has type 'uint64_t {aka long unsigned int}' [-Wformat=] keys[i].size(), m_framesize); ^ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:488:48: warning: format '%d' expects argument of type 'int', but argument 3 has type 'uint64_t {aka long unsigned int}' [-Wformat=] In file included from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:70:0: contrib/uiuc/plugins/molfile_plugin/src/vmddir.h: At global scope: contrib/uiuc/plugins/molfile_plugin/src/vmddir.h:137:12: warning: 'int vmd_file_is_executable(const char*)' defined but not used [-Wunused-function] static int vmd_file_is_executable(const char * filename) { ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:71:0: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'void swap2_unaligned(void*, long int)' defined but not used [-Wunused-function] static void swap2_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: 'void swap2_aligned(void*, long int)' defined but not used [-Wunused-function] static void swap2_aligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:110:13: warning: 'void swap4_aligned(void*, long int)' defined but not used [-Wunused-function] static void swap4_aligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: 'void swap8_aligned(void*, long int)' defined but not used [-Wunused-function] static void swap8_aligned(void *v, long ndata) { ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function 'int read_dsn6_data(void*, int, float*, float*)': contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:233:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(brick, sizeof(char), 512, fd); ^ contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function 'void* open_dsn6_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:91:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(fileHeader, sizeof(short), 19, fd); ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:63:0: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: 'void swap4_unaligned(void*, long int)' defined but not used [-Wunused-function] static void swap4_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: 'void swap8_unaligned(void*, long int)' defined but not used [-Wunused-function] static void swap8_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:110:13: warning: 'void swap4_aligned(void*, long int)' defined but not used [-Wunused-function] static void swap4_aligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: 'void swap8_aligned(void*, long int)' defined but not used [-Wunused-function] static void swap8_aligned(void *v, long ndata) { ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp: In function 'void* open_cube_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:181:32: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 256, cube->fd); // go on to next line ^ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:351:41: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(cube->fd, "%d", &cube->nsets); ^ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:356:35: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(cube->fd, "%d", &orb); ^ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp: In function 'void eatline(FILE*)': contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:141:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 1024, fd); // go on to next line ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:42:0: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At global scope: contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: 'int get_pte_idx(const char*)' defined but not used [-Wunused-function] static int get_pte_idx(const char *label) ^ contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: 'int get_pte_idx_from_string(const char*)' defined but not used [-Wunused-function] static int get_pte_idx_from_string(const char *label) { ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp: In function 'int read_ccp4_data(void*, int, float*, float*)': contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:370:57: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( fread(rowdata, sizeof(float), extent[0], fd) != extent[0] ) { ^ contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp: In function 'void* open_ccp4_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:183:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(symData, 81, fd); ^ In file included from contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:44:0: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope: contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: 'void swap2_unaligned(void*, long int)' defined but not used [-Wunused-function] static void swap2_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: 'void swap4_unaligned(void*, long int)' defined but not used [-Wunused-function] static void swap4_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: 'void swap8_unaligned(void*, long int)' defined but not used [-Wunused-function] static void swap8_unaligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: 'void swap2_aligned(void*, long int)' defined but not used [-Wunused-function] static void swap2_aligned(void *v, long ndata) { ^ contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: 'void swap8_aligned(void*, long int)' defined but not used [-Wunused-function] static void swap8_aligned(void *v, long ndata) { ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function 'int read_brix_data(void*, int, float*, float*)': contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:247:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(brick, sizeof(char), 512, fd); ^ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function 'void* open_brix_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:79:29: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(fd, "%3s", keyWord); ^ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:86:62: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(fd, " %s %d %d %d", keyWord, &org_x, &org_y, &org_z); ^ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:93:62: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(fd, " %s %d %d %d", keyWord, &ext_x, &ext_y, &ext_z); ^ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:100:65: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(fd, " %s %f %f %f", keyWord, &grid_x, &grid_y, &grid_z); ^ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:110:74: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] &cell_x, &cell_y, &cell_z, &cell_alpha, &cell_beta, &cell_gamma); ^ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:123:39: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(fd, " %s %f", keyWord, &prod); ^ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:128:39: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(fd, " %s %f", keyWord, &plus); ^ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:135:40: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(fd, " %s %f", keyWord, &sigma); ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'int read_bgf_timestep(void*, int, molfile_timestep_t*)': contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:243:37: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ^ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:252:37: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ^ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'int read_bgf_bonds_aux(void*, int*, int**, int**, float**)': contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:328:37: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ^ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:346:35: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ^ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:355:41: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(nextline, LINESIZE, bgf->file); ^ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:419:41: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ^ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'int read_bgf_structure(void*, int*, molfile_atom_t*)': contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:194:37: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ^ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:203:37: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ^ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'void* open_bgf_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:59:30: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/avsplugin.cpp -o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o -ffast-math -funroll-loops -O3 -fcommon x86_64-alt-linux-g++ -pthread -shared -pipe -Wall -g -O2 build/temp.linux-x86_64-2.7/ov/src/ov_utility.o build/temp.linux-x86_64-2.7/ov/src/OVRandom.o build/temp.linux-x86_64-2.7/ov/src/OVOneToOne.o build/temp.linux-x86_64-2.7/ov/src/OVOneToAny.o build/temp.linux-x86_64-2.7/ov/src/OVLexicon.o build/temp.linux-x86_64-2.7/ov/src/OVHeapArray.o build/temp.linux-x86_64-2.7/ov/src/OVHeap.o build/temp.linux-x86_64-2.7/ov/src/OVContext.o build/temp.linux-x86_64-2.7/layer0/os_gl.o build/temp.linux-x86_64-2.7/layer0/Word.o build/temp.linux-x86_64-2.7/layer0/Vector.o build/temp.linux-x86_64-2.7/layer0/Util.o build/temp.linux-x86_64-2.7/layer0/Triangle.o build/temp.linux-x86_64-2.7/layer0/Tracker.o build/temp.linux-x86_64-2.7/layer0/Texture.o build/temp.linux-x86_64-2.7/layer0/Tetsurf.o build/temp.linux-x86_64-2.7/layer0/Sphere.o build/temp.linux-x86_64-2.7/layer0/ShaderMgr.o build/temp.linux-x86_64-2.7/layer0/Raw.o build/temp.linux-x86_64-2.7/layer0/Queue.o build/temp.linux-x86_64-2.7/layer0/Pixmap.o build/temp.linux-x86_64-2.7/layer0/Parse.o build/temp.linux-x86_64-2.7/layer0/MyPNG.o build/temp.linux-x86_64-2.7/layer0/MemoryDebug.o build/temp.linux-x86_64-2.7/layer0/MemoryCache.o build/temp.linux-x86_64-2.7/layer0/Matrix.o build/temp.linux-x86_64-2.7/layer0/Match.o build/temp.linux-x86_64-2.7/layer0/Map.o build/temp.linux-x86_64-2.7/layer0/Isosurf.o build/temp.linux-x86_64-2.7/layer0/Field.o build/temp.linux-x86_64-2.7/layer0/Feedback.o build/temp.linux-x86_64-2.7/layer0/Err.o build/temp.linux-x86_64-2.7/layer0/Deferred.o build/temp.linux-x86_64-2.7/layer0/Debug.o build/temp.linux-x86_64-2.7/layer0/Crystal.o build/temp.linux-x86_64-2.7/layer0/Block.o build/temp.linux-x86_64-2.7/layer1/Wizard.o build/temp.linux-x86_64-2.7/layer1/View.o build/temp.linux-x86_64-2.7/layer1/TypeFace.o build/temp.linux-x86_64-2.7/layer1/Text.o build/temp.linux-x86_64-2.7/layer1/Symmetry.o build/temp.linux-x86_64-2.7/layer1/Shaker.o build/temp.linux-x86_64-2.7/layer1/Setting.o build/temp.linux-x86_64-2.7/layer1/Seq.o build/temp.linux-x86_64-2.7/layer1/ScrollBar.o build/temp.linux-x86_64-2.7/layer1/Scene.o build/temp.linux-x86_64-2.7/layer1/Rep.o build/temp.linux-x86_64-2.7/layer1/Ray.o build/temp.linux-x86_64-2.7/layer1/PyMOLObject.o build/temp.linux-x86_64-2.7/layer1/Pop.o build/temp.linux-x86_64-2.7/layer1/PConv.o build/temp.linux-x86_64-2.7/layer1/P.o build/temp.linux-x86_64-2.7/layer1/Ortho.o build/temp.linux-x86_64-2.7/layer1/Movie.o build/temp.linux-x86_64-2.7/layer1/FontType.o build/temp.linux-x86_64-2.7/layer1/FontGLUTHel18.o build/temp.linux-x86_64-2.7/layer1/FontGLUTHel12.o build/temp.linux-x86_64-2.7/layer1/FontGLUTHel10.o build/temp.linux-x86_64-2.7/layer1/FontGLUT9x15.o build/temp.linux-x86_64-2.7/layer1/FontGLUT8x13.o build/temp.linux-x86_64-2.7/layer1/FontGLUT.o build/temp.linux-x86_64-2.7/layer1/Font.o build/temp.linux-x86_64-2.7/layer1/Extrude.o build/temp.linux-x86_64-2.7/layer1/Control.o build/temp.linux-x86_64-2.7/layer1/Color.o build/temp.linux-x86_64-2.7/layer1/Character.o build/temp.linux-x86_64-2.7/layer1/CGO.o build/temp.linux-x86_64-2.7/layer1/ButMode.o build/temp.linux-x86_64-2.7/layer1/Basis.o build/temp.linux-x86_64-2.7/layer2/VFont.o build/temp.linux-x86_64-2.7/layer2/SculptCache.o build/temp.linux-x86_64-2.7/layer2/Sculpt.o build/temp.linux-x86_64-2.7/layer2/RepWireBond.o build/temp.linux-x86_64-2.7/layer2/RepSurface.o build/temp.linux-x86_64-2.7/layer2/RepSphere.o build/temp.linux-x86_64-2.7/layer2/RepRibbon.o build/temp.linux-x86_64-2.7/layer2/RepNonbondedSphere.o build/temp.linux-x86_64-2.7/layer2/RepNonbonded.o build/temp.linux-x86_64-2.7/layer2/RepMesh.o build/temp.linux-x86_64-2.7/layer2/RepLabel.o build/temp.linux-x86_64-2.7/layer2/RepEllipsoid.o build/temp.linux-x86_64-2.7/layer2/RepDot.o build/temp.linux-x86_64-2.7/layer2/RepDistLabel.o build/temp.linux-x86_64-2.7/layer2/RepDistDash.o build/temp.linux-x86_64-2.7/layer2/RepDihedral.o build/temp.linux-x86_64-2.7/layer2/RepCylBond.o build/temp.linux-x86_64-2.7/layer2/RepCartoon.o build/temp.linux-x86_64-2.7/layer2/RepAngle.o build/temp.linux-x86_64-2.7/layer2/ObjectVolume.o build/temp.linux-x86_64-2.7/layer2/ObjectSurface.o build/temp.linux-x86_64-2.7/layer2/ObjectSlice.o build/temp.linux-x86_64-2.7/layer2/ObjectMolecule2.o build/temp.linux-x86_64-2.7/layer2/ObjectMolecule.o build/temp.linux-x86_64-2.7/layer2/ObjectMesh.o build/temp.linux-x86_64-2.7/layer2/ObjectMap.o build/temp.linux-x86_64-2.7/layer2/ObjectGroup.o build/temp.linux-x86_64-2.7/layer2/ObjectGadgetRamp.o build/temp.linux-x86_64-2.7/layer2/ObjectGadget.o build/temp.linux-x86_64-2.7/layer2/ObjectDist.o build/temp.linux-x86_64-2.7/layer2/ObjectCallback.o build/temp.linux-x86_64-2.7/layer2/ObjectCGO.o build/temp.linux-x86_64-2.7/layer2/ObjectAlignment.o build/temp.linux-x86_64-2.7/layer2/GadgetSet.o build/temp.linux-x86_64-2.7/layer2/DistSet.o build/temp.linux-x86_64-2.7/layer2/CoordSet.o build/temp.linux-x86_64-2.7/layer2/AtomInfo.o build/temp.linux-x86_64-2.7/layer3/Selector.o build/temp.linux-x86_64-2.7/layer3/Seeker.o build/temp.linux-x86_64-2.7/layer3/PlugIOManager.o build/temp.linux-x86_64-2.7/layer3/Executive.o build/temp.linux-x86_64-2.7/layer3/Editor.o build/temp.linux-x86_64-2.7/layer4/PopUp.o build/temp.linux-x86_64-2.7/layer4/Menu.o build/temp.linux-x86_64-2.7/layer4/Export.o build/temp.linux-x86_64-2.7/layer4/Cmd.o build/temp.linux-x86_64-2.7/layer5/main.o build/temp.linux-x86_64-2.7/layer5/TestPyMOL.o build/temp.linux-x86_64-2.7/layer5/PyMOL.o build/temp.linux-x86_64-2.7/modules/cealign/src/ccealignmodule.o build/temp.linux-x86_64-2.7/build/generated/ShaderText.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/hash.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mmcif.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o -lpng -lfreetype -lGLEW -lGL -lGLU -lglut -lpython2.7 -o build/lib.linux-x86_64-2.7/pymol/_cmd.so building 'chempy.champ._champ' extension creating build/temp.linux-x86_64-2.7/contrib/champ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/vla.c -o build/temp.linux-x86_64-2.7/contrib/champ/vla.o x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/strblock.c -o build/temp.linux-x86_64-2.7/contrib/champ/strblock.o x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/sort.c -o build/temp.linux-x86_64-2.7/contrib/champ/sort.o x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/os_memory.c -o build/temp.linux-x86_64-2.7/contrib/champ/os_memory.o contrib/champ/os_memory.c: In function 'OSMemoryZero': contrib/champ/os_memory.c:65:18: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] while(count&&(((int)p)&mask)) { ^ contrib/champ/os_memory.c: In function 'OSMemoryHashAdd': contrib/champ/os_memory.c:146:8: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] hash=(int)rec; ^ contrib/champ/os_memory.c: In function 'OSMemoryHashRemove': contrib/champ/os_memory.c:159:8: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] hash=(int)rec; ^ x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/list.c -o build/temp.linux-x86_64-2.7/contrib/champ/list.o x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/feedback2.c -o build/temp.linux-x86_64-2.7/contrib/champ/feedback2.o x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/err2.c -o build/temp.linux-x86_64-2.7/contrib/champ/err2.o x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/chiral.c -o build/temp.linux-x86_64-2.7/contrib/champ/chiral.o x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/champ_module.c -o build/temp.linux-x86_64-2.7/contrib/champ/champ_module.o x86_64-alt-linux-gcc -pthread -DNDEBUG -pipe -Wall -g -O3 -pipe -Wall -g -O2 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/champ.c -o build/temp.linux-x86_64-2.7/contrib/champ/champ.o x86_64-alt-linux-gcc -pthread -shared -pipe -Wall -g -O2 build/temp.linux-x86_64-2.7/contrib/champ/vla.o build/temp.linux-x86_64-2.7/contrib/champ/strblock.o build/temp.linux-x86_64-2.7/contrib/champ/sort.o build/temp.linux-x86_64-2.7/contrib/champ/os_memory.o build/temp.linux-x86_64-2.7/contrib/champ/list.o build/temp.linux-x86_64-2.7/contrib/champ/feedback2.o build/temp.linux-x86_64-2.7/contrib/champ/err2.o build/temp.linux-x86_64-2.7/contrib/champ/chiral.o build/temp.linux-x86_64-2.7/contrib/champ/champ_module.o build/temp.linux-x86_64-2.7/contrib/champ/champ.o -lpython2.7 -o build/lib.linux-x86_64-2.7/chempy/champ/_champ.so + exit 0 Executing(%install): /bin/sh -e /usr/src/tmp/rpm-tmp.98919 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + /bin/chmod -Rf u+rwX -- /usr/src/tmp/pymol-buildroot + : + /bin/rm -rf -- /usr/src/tmp/pymol-buildroot + cd pymol-1.7.2.1 + /usr/bin/python2.7 setup.py install --skip-build --root=/usr/src/tmp/pymol-buildroot --force running install running install_lib creating /usr/src/tmp/pymol-buildroot creating /usr/src/tmp/pymol-buildroot/usr creating /usr/src/tmp/pymol-buildroot/usr/lib64 creating /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7 creating /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages creating /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol2 copying build/lib.linux-x86_64-2.7/pymol2/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol2 copying build/lib.linux-x86_64-2.7/pymol2/cmd2.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol2 copying build/lib.linux-x86_64-2.7/pymol2/make_cmd2.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol2 creating /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/web creating /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/web/examples copying build/lib.linux-x86_64-2.7/web/examples/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/web/examples copying build/lib.linux-x86_64-2.7/web/examples/justhttpd.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/web/examples copying build/lib.linux-x86_64-2.7/web/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/web copying build/lib.linux-x86_64-2.7/web/pymolhttpd.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/web creating /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_wx copying build/lib.linux-x86_64-2.7/pmg_wx/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_wx creating /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk copying build/lib.linux-x86_64-2.7/pmg_tk/ColorEditor.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk copying build/lib.linux-x86_64-2.7/pmg_tk/Demo.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk copying build/lib.linux-x86_64-2.7/pmg_tk/PMGApp.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk copying build/lib.linux-x86_64-2.7/pmg_tk/PyMOLMapLoad.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk copying build/lib.linux-x86_64-2.7/pmg_tk/SetEditor.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk copying build/lib.linux-x86_64-2.7/pmg_tk/Setting.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk copying build/lib.linux-x86_64-2.7/pmg_tk/TextEditor.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk copying build/lib.linux-x86_64-2.7/pmg_tk/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk copying build/lib.linux-x86_64-2.7/pmg_tk/volume.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk creating /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/startup copying build/lib.linux-x86_64-2.7/pmg_tk/startup/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/startup copying build/lib.linux-x86_64-2.7/pmg_tk/startup/apbs_tools.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/startup copying build/lib.linux-x86_64-2.7/pmg_tk/startup/remote_pdb_load.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/startup creating /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/skins creating /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/skins/normal copying build/lib.linux-x86_64-2.7/pmg_tk/skins/normal/ModalWindow.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/skins/normal copying build/lib.linux-x86_64-2.7/pmg_tk/skins/normal/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/skins/normal copying build/lib.linux-x86_64-2.7/pmg_tk/skins/normal/builder.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/skins/normal copying build/lib.linux-x86_64-2.7/pmg_tk/skins/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/skins creating /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/skins/demo copying build/lib.linux-x86_64-2.7/pmg_tk/skins/demo/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/skins/demo creating /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/arc.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/bond_amber.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/bond_mmff.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/bonds.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/brick.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/cc1.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/cex.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/charge.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/cif.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/cpv.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/dictdb.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/gamess1.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/gms.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/hetatm.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/io.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/lst.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/mae.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/map.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/mass.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/mmd.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/models.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/mol.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/mol2.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/neighbor.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/pdb.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/pkl.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/place.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/protein.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/protein_amber.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/protein_amber99.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/protein_mmff.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/protein_residues.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/sdf.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/solvate.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/water_amber.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/water_residues.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy copying build/lib.linux-x86_64-2.7/chempy/xyz.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy creating /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/bmin copying build/lib.linux-x86_64-2.7/chempy/bmin/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/bmin copying build/lib.linux-x86_64-2.7/chempy/bmin/commands.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/bmin copying build/lib.linux-x86_64-2.7/chempy/bmin/realtime.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/bmin copying build/lib.linux-x86_64-2.7/chempy/bmin/state.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/bmin copying build/lib.linux-x86_64-2.7/chempy/bmin/util.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/bmin creating /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/champ copying build/lib.linux-x86_64-2.7/chempy/champ/_champ.so -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/champ copying build/lib.linux-x86_64-2.7/chempy/champ/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/champ copying build/lib.linux-x86_64-2.7/chempy/champ/amber99.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/champ copying build/lib.linux-x86_64-2.7/chempy/champ/assign.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/champ copying build/lib.linux-x86_64-2.7/chempy/champ/formal_charges.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/champ creating /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/fragments copying build/lib.linux-x86_64-2.7/chempy/fragments/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/fragments creating /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/fast copying build/lib.linux-x86_64-2.7/chempy/fast/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/fast creating /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/tinker copying build/lib.linux-x86_64-2.7/chempy/tinker/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/tinker copying build/lib.linux-x86_64-2.7/chempy/tinker/amber.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/tinker copying build/lib.linux-x86_64-2.7/chempy/tinker/keyword.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/tinker copying build/lib.linux-x86_64-2.7/chempy/tinker/realtime.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/tinker copying build/lib.linux-x86_64-2.7/chempy/tinker/state.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/tinker creating /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/_cmd.so -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol creating /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/plugins copying build/lib.linux-x86_64-2.7/pymol/plugins/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/plugins copying build/lib.linux-x86_64-2.7/pymol/plugins/installation.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/plugins copying build/lib.linux-x86_64-2.7/pymol/plugins/legacysupport.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/plugins copying build/lib.linux-x86_64-2.7/pymol/plugins/managergui.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/plugins copying build/lib.linux-x86_64-2.7/pymol/plugins/repository.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/plugins copying build/lib.linux-x86_64-2.7/pymol/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/api.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/callback.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/cgo.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/checking.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/cmd.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/colorramping.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/commanding.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/completing.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/computing.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/constants.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/constants_palette.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/controlling.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/creating.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/editing.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/editor.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/experimenting.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/exporting.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/externing.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/feedingback.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/fitting.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/gui.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/headering.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/helping.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/importing.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/internal.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/invocation.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/keyboard.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/keywords.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/locking.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/m4x.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/menu.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/monitoring.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/movie.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/moving.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/parser.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/parsing.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/povray.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/preset.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/querying.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/rpc.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/selecting.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/selector.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/setting.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/shortcut.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/util.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/vfont.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/viewing.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/wizarding.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/xray.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol copying build/lib.linux-x86_64-2.7/pymol/xwin.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol creating /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/annotation.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/appearance.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/benchmark.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/box.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/charge.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/cleanup.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/demo.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/density.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/distance.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/dragging.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/fedora.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/filter.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/label.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/measurement.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/message.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/mutagenesis.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/pair_fit.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/pseudoatom.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/renaming.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/sculpting.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/security.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/stereodemo.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard copying build/lib.linux-x86_64-2.7/pymol/wizard/toggle.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard creating /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/contrib copying build/lib.linux-x86_64-2.7/pymol/contrib/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/contrib creating /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/opengl copying build/lib.linux-x86_64-2.7/pymol/opengl/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/opengl creating /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/opengl/gl copying build/lib.linux-x86_64-2.7/pymol/opengl/gl/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/opengl/gl creating /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/opengl/glut copying build/lib.linux-x86_64-2.7/pymol/opengl/glut/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/opengl/glut creating /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/opengl/glu copying build/lib.linux-x86_64-2.7/pymol/opengl/glu/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/opengl/glu creating /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/embed creating /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/embed/wxpymol copying build/lib.linux-x86_64-2.7/pymol/embed/wxpymol/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/embed/wxpymol copying build/lib.linux-x86_64-2.7/pymol/embed/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/embed creating /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/embed/epymol copying build/lib.linux-x86_64-2.7/pymol/embed/epymol/__init__.py -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/embed/epymol byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol2/__init__.py to __init__.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol2/cmd2.py to cmd2.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol2/make_cmd2.py to make_cmd2.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/web/examples/__init__.py to __init__.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/web/examples/justhttpd.py to justhttpd.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/web/__init__.py to __init__.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/web/pymolhttpd.py to pymolhttpd.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_wx/__init__.py to __init__.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/ColorEditor.py to ColorEditor.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/Demo.py to Demo.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/PMGApp.py to PMGApp.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/PyMOLMapLoad.py to PyMOLMapLoad.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/SetEditor.py to SetEditor.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/Setting.py to Setting.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/TextEditor.py to TextEditor.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/__init__.py to __init__.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/volume.py to volume.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/startup/__init__.py to __init__.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/startup/apbs_tools.py to apbs_tools.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/startup/remote_pdb_load.py to remote_pdb_load.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/skins/normal/ModalWindow.py to ModalWindow.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/skins/normal/__init__.py to __init__.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/skins/normal/builder.py to builder.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/skins/__init__.py to __init__.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/skins/demo/__init__.py to __init__.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/__init__.py to __init__.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/arc.py to arc.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/bond_amber.py to bond_amber.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/bond_mmff.py to bond_mmff.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/bonds.py to bonds.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/brick.py to brick.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/cc1.py to cc1.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/cex.py to cex.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/charge.py to charge.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/cif.py to cif.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/cpv.py to cpv.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/dictdb.py to dictdb.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/gamess1.py to gamess1.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/gms.py to gms.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/hetatm.py to hetatm.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/io.py to io.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/lst.py to lst.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/mae.py to mae.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/map.py to map.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/mass.py to mass.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/mmd.py to mmd.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/models.py to models.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/mol.py to mol.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/mol2.py to mol2.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/neighbor.py to neighbor.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/pdb.py to pdb.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/pkl.py to pkl.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/place.py to place.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/protein.py to protein.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/protein_amber.py to protein_amber.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/protein_amber99.py to protein_amber99.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/protein_mmff.py to protein_mmff.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/protein_residues.py to protein_residues.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/sdf.py to sdf.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/solvate.py to solvate.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/water_amber.py to water_amber.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/water_residues.py to water_residues.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/xyz.py to xyz.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/bmin/__init__.py to __init__.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/bmin/commands.py to commands.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/bmin/realtime.py to realtime.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/bmin/state.py to state.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/bmin/util.py to util.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/champ/__init__.py to __init__.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/champ/amber99.py to amber99.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/champ/assign.py to assign.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/champ/formal_charges.py to formal_charges.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/fragments/__init__.py to __init__.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/fast/__init__.py to __init__.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/tinker/__init__.py to __init__.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/tinker/amber.py to amber.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/tinker/keyword.py to keyword.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/tinker/realtime.py to realtime.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/tinker/state.py to state.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/plugins/__init__.py to __init__.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/plugins/installation.py to installation.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/plugins/legacysupport.py to legacysupport.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/plugins/managergui.py to managergui.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/plugins/repository.py to repository.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/__init__.py to __init__.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/api.py to api.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/callback.py to callback.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/cgo.py to cgo.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/checking.py to checking.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/cmd.py to cmd.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/colorramping.py to colorramping.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/commanding.py to commanding.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/completing.py to completing.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/computing.py to computing.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/constants.py to constants.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/constants_palette.py to constants_palette.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/controlling.py to controlling.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/creating.py to creating.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/editing.py to editing.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/editor.py to editor.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/experimenting.py to experimenting.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/exporting.py to exporting.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/externing.py to externing.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/feedingback.py to feedingback.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/fitting.py to fitting.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/gui.py to gui.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/headering.py to headering.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/helping.py to helping.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/importing.py to importing.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/internal.py to internal.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/invocation.py to invocation.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/keyboard.py to keyboard.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/keywords.py to keywords.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/locking.py to locking.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/m4x.py to m4x.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/menu.py to menu.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/monitoring.py to monitoring.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/movie.py to movie.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/moving.py to moving.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/parser.py to parser.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/parsing.py to parsing.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/povray.py to povray.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/preset.py to preset.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/querying.py to querying.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/rpc.py to rpc.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/selecting.py to selecting.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/selector.py to selector.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/setting.py to setting.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/shortcut.py to shortcut.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/util.py to util.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/vfont.py to vfont.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/viewing.py to viewing.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizarding.py to wizarding.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/xray.py to xray.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/xwin.py to xwin.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/__init__.py to __init__.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/annotation.py to annotation.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/appearance.py to appearance.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/benchmark.py to benchmark.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/box.py to box.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/charge.py to charge.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/cleanup.py to cleanup.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/demo.py to demo.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/density.py to density.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/distance.py to distance.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/dragging.py to dragging.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/fedora.py to fedora.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/filter.py to filter.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/label.py to label.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/measurement.py to measurement.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/message.py to message.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/mutagenesis.py to mutagenesis.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/pair_fit.py to pair_fit.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/pseudoatom.py to pseudoatom.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/renaming.py to renaming.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/sculpting.py to sculpting.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/security.py to security.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/stereodemo.py to stereodemo.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/toggle.py to toggle.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/contrib/__init__.py to __init__.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/opengl/__init__.py to __init__.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/opengl/gl/__init__.py to __init__.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/opengl/glut/__init__.py to __init__.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/opengl/glu/__init__.py to __init__.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/embed/wxpymol/__init__.py to __init__.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/embed/__init__.py to __init__.pyc byte-compiling /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/embed/epymol/__init__.py to __init__.pyc running install_egg_info Writing /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol-1.7.2.1-py2.7.egg-info creating /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/pymol_path copying LICENSE -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/pymol_path copying data -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/pymol_path/data copying test -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/pymol_path/test copying scripts -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/pymol_path/scripts copying examples -> /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/pymol_path/examples creating /usr/src/tmp/pymol-buildroot/usr/bin copying pymol -> /usr/src/tmp/pymol-buildroot/usr/bin + for i in contrib/champ contrib/modules contrib/sglite contrib/uiuc/plugins/include contrib/uiuc/plugins/molfile_plugin/src layer0 layer1 layer2 layer3 layer4 layer5 ov/src + mkdir -p /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/champ + install -pm644 contrib/champ/champ.h contrib/champ/chiral.h contrib/champ/const.h contrib/champ/err2.h contrib/champ/feedback2.h contrib/champ/list.h contrib/champ/mac.h contrib/champ/os_memory.h contrib/champ/os_python.h contrib/champ/os_std.h contrib/champ/sort.h contrib/champ/strblock.h contrib/champ/vla.h /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/champ/ + for i in contrib/champ contrib/modules contrib/sglite contrib/uiuc/plugins/include contrib/uiuc/plugins/molfile_plugin/src layer0 layer1 layer2 layer3 layer4 layer5 ov/src + mkdir -p /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/modules + install -pm644 contrib/modules/ExtensionClass.h /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/modules/ + for i in contrib/champ contrib/modules contrib/sglite contrib/uiuc/plugins/include contrib/uiuc/plugins/molfile_plugin/src layer0 layer1 layer2 layer3 layer4 layer5 ov/src + mkdir -p /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/sglite + install -pm644 contrib/sglite/sgconst.h contrib/sglite/sglite.h contrib/sglite/sgrefset.h /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/sglite/ + for i in contrib/champ contrib/modules contrib/sglite contrib/uiuc/plugins/include contrib/uiuc/plugins/molfile_plugin/src layer0 layer1 layer2 layer3 layer4 layer5 ov/src + mkdir -p /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/uiuc/plugins/include + install -pm644 contrib/uiuc/plugins/include/import_graphics_plugin.h contrib/uiuc/plugins/include/molfile_plugin.h contrib/uiuc/plugins/include/vmdconio.h contrib/uiuc/plugins/include/vmdplugin.h /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/uiuc/plugins/include/ + for i in contrib/champ contrib/modules contrib/sglite contrib/uiuc/plugins/include contrib/uiuc/plugins/molfile_plugin/src layer0 layer1 layer2 layer3 layer4 layer5 ov/src + mkdir -p /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/uiuc/plugins/molfile_plugin/src + install -pm644 contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h contrib/uiuc/plugins/molfile_plugin/src/endianswap.h contrib/uiuc/plugins/molfile_plugin/src/fastio.h contrib/uiuc/plugins/molfile_plugin/src/fortread.h contrib/uiuc/plugins/molfile_plugin/src/gaussianplugin.h contrib/uiuc/plugins/molfile_plugin/src/hash.h contrib/uiuc/plugins/molfile_plugin/src/inthash.h contrib/uiuc/plugins/molfile_plugin/src/largefiles.h contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h contrib/uiuc/plugins/molfile_plugin/src/readpdb.h contrib/uiuc/plugins/molfile_plugin/src/unit_conversion.h contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h contrib/uiuc/plugins/molfile_plugin/src/vmddir.h /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/uiuc/plugins/molfile_plugin/src/ + for i in contrib/champ contrib/modules contrib/sglite contrib/uiuc/plugins/include contrib/uiuc/plugins/molfile_plugin/src layer0 layer1 layer2 layer3 layer4 layer5 ov/src + mkdir -p /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0 + install -pm644 layer0/Base.h layer0/Block.h layer0/Crystal.h layer0/Debug.h layer0/Deferred.h layer0/Err.h layer0/Feedback.h layer0/Field.h layer0/Isosurf.h layer0/ListMacros.h layer0/Map.h layer0/Match.h layer0/Matrix.h layer0/MemoryCache.h layer0/MemoryDebug.h layer0/MyPNG.h layer0/OOMac.h layer0/Parse.h layer0/Pixmap.h layer0/PyMOLGlobals.h layer0/PyMOLOptions.h layer0/Queue.h layer0/Raw.h layer0/ShaderMgr.h layer0/Sphere.h layer0/SphereData.h layer0/Tetsurf.h layer0/Texture.h layer0/Tracker.h layer0/Triangle.h layer0/Util.h layer0/Vector.h layer0/Version.h layer0/Word.h layer0/os_gl.h layer0/os_gl_pre.h layer0/os_limits.h layer0/os_predef.h layer0/os_proprietary.h layer0/os_python.h layer0/os_std.h layer0/os_time.h layer0/os_types.h layer0/os_unix.h /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/ + for i in contrib/champ contrib/modules contrib/sglite contrib/uiuc/plugins/include contrib/uiuc/plugins/molfile_plugin/src layer0 layer1 layer2 layer3 layer4 layer5 ov/src + mkdir -p /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1 + install -pm644 layer1/Basis.h layer1/ButMode.h layer1/CGO.h layer1/Character.h layer1/Color.h layer1/Control.h layer1/Extrude.h layer1/Font.h layer1/FontGLUT.h layer1/FontTTF.h layer1/FontTTF2.h layer1/FontType.h layer1/Movie.h layer1/Ortho.h layer1/P.h layer1/PConv.h layer1/Pop.h layer1/PyMOLObject.h layer1/Ray.h layer1/Rep.h layer1/Scene.h layer1/ScrollBar.h layer1/Seq.h layer1/Setting.h layer1/Shaker.h layer1/Symmetry.h layer1/Text.h layer1/TypeFace.h layer1/View.h layer1/Wizard.h /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/ + for i in contrib/champ contrib/modules contrib/sglite contrib/uiuc/plugins/include contrib/uiuc/plugins/molfile_plugin/src layer0 layer1 layer2 layer3 layer4 layer5 ov/src + mkdir -p /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2 + install -pm644 layer2/AtomInfo.h layer2/CoordSet.h layer2/DistSet.h layer2/GadgetSet.h layer2/ObjectAlignment.h layer2/ObjectCGO.h layer2/ObjectCallback.h layer2/ObjectDist.h layer2/ObjectGadget.h layer2/ObjectGadgetRamp.h layer2/ObjectGroup.h layer2/ObjectMap.h layer2/ObjectMesh.h layer2/ObjectMolecule.h layer2/ObjectSlice.h layer2/ObjectSurface.h layer2/ObjectVolume.h layer2/RepAngle.h layer2/RepCartoon.h layer2/RepCylBond.h layer2/RepDihedral.h layer2/RepDistDash.h layer2/RepDistLabel.h layer2/RepDot.h layer2/RepEllipsoid.h layer2/RepLabel.h layer2/RepMesh.h layer2/RepNonbonded.h layer2/RepNonbondedSphere.h layer2/RepRibbon.h layer2/RepSphere.h layer2/RepSurface.h layer2/RepWireBond.h layer2/Sculpt.h layer2/SculptCache.h layer2/VFont.h /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ + for i in contrib/champ contrib/modules contrib/sglite contrib/uiuc/plugins/include contrib/uiuc/plugins/molfile_plugin/src layer0 layer1 layer2 layer3 layer4 layer5 ov/src + mkdir -p /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer3 + install -pm644 layer3/Editor.h layer3/Executive.h layer3/Executive_pre.h layer3/PlugIOManager.h layer3/Seeker.h layer3/Selector.h /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer3/ + for i in contrib/champ contrib/modules contrib/sglite contrib/uiuc/plugins/include contrib/uiuc/plugins/molfile_plugin/src layer0 layer1 layer2 layer3 layer4 layer5 ov/src + mkdir -p /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer4 + install -pm644 layer4/Cmd.h layer4/Export.h layer4/Menu.h layer4/PopUp.h /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer4/ + for i in contrib/champ contrib/modules contrib/sglite contrib/uiuc/plugins/include contrib/uiuc/plugins/molfile_plugin/src layer0 layer1 layer2 layer3 layer4 layer5 ov/src + mkdir -p /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer5 + install -pm644 layer5/PyMOL.h layer5/TestPyMOL.h layer5/main.h /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer5/ + for i in contrib/champ contrib/modules contrib/sglite contrib/uiuc/plugins/include contrib/uiuc/plugins/molfile_plugin/src layer0 layer1 layer2 layer3 layer4 layer5 ov/src + mkdir -p /usr/src/tmp/pymol-buildroot/usr/include/pymol/ov/src + install -pm644 ov/src/OVContext.h ov/src/OVHeap.h ov/src/OVHeapArray.h ov/src/OVLexicon.h ov/src/OVOneToAny.h ov/src/OVOneToOne.h ov/src/OVRandom.h ov/src/OVreturns.h ov/src/ov_defines.h ov/src/ov_port.h ov/src/ov_status.h ov/src/ov_types.h ov/src/ov_utility.h /usr/src/tmp/pymol-buildroot/usr/include/pymol/ov/src/ + mkdir -p /usr/src/tmp/pymol-buildroot/usr/bin + cat + chmod +x /usr/src/tmp/pymol-buildroot/usr/bin/pymol + mkdir -pv /usr/src/tmp/pymol-buildroot/usr/share/doc/PyMOL mkdir: created directory '/usr/src/tmp/pymol-buildroot/usr/share' mkdir: created directory '/usr/src/tmp/pymol-buildroot/usr/share/doc' mkdir: created directory '/usr/src/tmp/pymol-buildroot/usr/share/doc/PyMOL' + cp PymolRef.pdf /usr/src/tmp/pymol-buildroot/usr/share/doc/PyMOL/ + bzip2 ChangeLog + /usr/lib/rpm/brp-alt Cleaning files in /usr/src/tmp/pymol-buildroot (auto) mode of './usr/lib64/python2.7/site-packages/pymol/_cmd.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) mode of './usr/lib64/python2.7/site-packages/chempy/champ/_champ.so' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) Verifying and fixing files in /usr/src/tmp/pymol-buildroot (binconfig,pkgconfig,libtool,desktop) Compressing files in /usr/src/tmp/pymol-buildroot (auto) Adjusting library links in /usr/src/tmp/pymol-buildroot ./usr/lib64: Verifying ELF objects in /usr/src/tmp/pymol-buildroot (arch=normal,fhs=normal,lfs=relaxed,lint=relaxed,rpath=normal,stack=normal,textrel=normal,unresolved=normal) Bytecompiling python modules in /usr/src/tmp/pymol-buildroot using /usr/bin/python2.7 unlink /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/bmin/__init__.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/bmin/commands.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/bmin/realtime.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/bmin/state.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/bmin/util.pyc compile /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/bmin/__init__.py compile /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/bmin/commands.py compile /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/bmin/realtime.py compile /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/bmin/state.py compile /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/bmin/util.py unlink /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/champ/__init__.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/champ/amber99.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/champ/assign.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/champ/formal_charges.pyc compile /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/champ/__init__.py compile /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/champ/amber99.py compile /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/champ/assign.py compile /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/champ/formal_charges.py unlink /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/fast/__init__.pyc compile /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/fast/__init__.py unlink /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/fragments/__init__.pyc compile /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/fragments/__init__.py unlink /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/tinker/__init__.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/tinker/amber.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/tinker/keyword.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/tinker/realtime.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/tinker/state.pyc compile /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/tinker/__init__.py compile /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/tinker/amber.py compile /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/tinker/keyword.py compile /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/tinker/realtime.py compile /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/tinker/state.py unlink /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/__init__.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/arc.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/bond_amber.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/bond_mmff.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/bonds.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/brick.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/cc1.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/cex.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/charge.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/cif.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/cpv.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/dictdb.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/gamess1.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/gms.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/hetatm.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/io.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/lst.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/mae.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/map.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/mass.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/mmd.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/models.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/mol.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/mol2.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/neighbor.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/pdb.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/pkl.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/place.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/protein.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/protein_amber.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/protein_amber99.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/protein_mmff.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/protein_residues.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/sdf.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/solvate.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/water_amber.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/water_residues.pyc unlink /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/xyz.pyc compile /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/__init__.py compile /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/arc.py compile /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/bond_amber.py compile /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/bond_mmff.py compile /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/bonds.py compile /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/brick.py compile /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/cc1.py compile /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/cex.py compile /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/charge.py compile /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/cif.py compile /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/cpv.py compile /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/dictdb.py compile /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/gamess1.py compile /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/gms.py compile /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/hetatm.py compile /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/io.py compile /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/lst.py compile /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/mae.py compile /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/map.py compile /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/mass.py compile /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/mmd.py compile /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/models.py compile /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/mol.py compile /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/mol2.py compile /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/neighbor.py compile /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/pdb.py compile /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/pkl.py compile /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/place.py compile /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/protein.py compile /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/protein_amber.py compile /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/protein_amber99.py compile /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/protein_mmff.py compile /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/protein_residues.py compile /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/sdf.py compile /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/solvate.py compile 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'./usr/lib64/python2.7/site-packages/pmg_tk/volume.pyc' './usr/lib64/python2.7/site-packages/pmg_tk/__init__.pyo' => './usr/lib64/python2.7/site-packages/pmg_tk/__init__.pyc' './usr/lib64/python2.7/site-packages/pmg_tk/TextEditor.pyo' => './usr/lib64/python2.7/site-packages/pmg_tk/TextEditor.pyc' './usr/lib64/python2.7/site-packages/pmg_tk/Setting.pyo' => './usr/lib64/python2.7/site-packages/pmg_tk/Setting.pyc' './usr/lib64/python2.7/site-packages/pmg_tk/SetEditor.pyo' => './usr/lib64/python2.7/site-packages/pmg_tk/SetEditor.pyc' './usr/lib64/python2.7/site-packages/pmg_tk/PyMOLMapLoad.pyo' => './usr/lib64/python2.7/site-packages/pmg_tk/PyMOLMapLoad.pyc' './usr/lib64/python2.7/site-packages/pmg_tk/PMGApp.pyo' => './usr/lib64/python2.7/site-packages/pmg_tk/PMGApp.pyc' './usr/lib64/python2.7/site-packages/pmg_tk/Demo.pyo' => './usr/lib64/python2.7/site-packages/pmg_tk/Demo.pyc' './usr/lib64/python2.7/site-packages/pmg_tk/ColorEditor.pyo' => './usr/lib64/python2.7/site-packages/pmg_tk/ColorEditor.pyc' './usr/lib64/python2.7/site-packages/pmg_tk/skins/__init__.pyo' => './usr/lib64/python2.7/site-packages/pmg_tk/skins/__init__.pyc' './usr/lib64/python2.7/site-packages/pmg_tk/skins/demo/__init__.pyo' => './usr/lib64/python2.7/site-packages/pmg_tk/skins/demo/__init__.pyc' './usr/lib64/python2.7/site-packages/pmg_tk/skins/normal/builder.pyo' => './usr/lib64/python2.7/site-packages/pmg_tk/skins/normal/builder.pyc' './usr/lib64/python2.7/site-packages/pmg_tk/skins/normal/__init__.pyo' => './usr/lib64/python2.7/site-packages/pmg_tk/skins/normal/__init__.pyc' './usr/lib64/python2.7/site-packages/pmg_tk/skins/normal/ModalWindow.pyo' => './usr/lib64/python2.7/site-packages/pmg_tk/skins/normal/ModalWindow.pyc' './usr/lib64/python2.7/site-packages/pmg_tk/startup/remote_pdb_load.pyo' => './usr/lib64/python2.7/site-packages/pmg_tk/startup/remote_pdb_load.pyc' './usr/lib64/python2.7/site-packages/pmg_tk/startup/apbs_tools.pyo' => './usr/lib64/python2.7/site-packages/pmg_tk/startup/apbs_tools.pyc' './usr/lib64/python2.7/site-packages/pmg_tk/startup/__init__.pyo' => './usr/lib64/python2.7/site-packages/pmg_tk/startup/__init__.pyc' './usr/lib64/python2.7/site-packages/pmg_wx/__init__.pyo' => './usr/lib64/python2.7/site-packages/pmg_wx/__init__.pyc' './usr/lib64/python2.7/site-packages/web/pymolhttpd.pyo' => './usr/lib64/python2.7/site-packages/web/pymolhttpd.pyc' './usr/lib64/python2.7/site-packages/web/__init__.pyo' => './usr/lib64/python2.7/site-packages/web/__init__.pyc' './usr/lib64/python2.7/site-packages/web/examples/justhttpd.pyo' => './usr/lib64/python2.7/site-packages/web/examples/justhttpd.pyc' './usr/lib64/python2.7/site-packages/web/examples/__init__.pyo' => './usr/lib64/python2.7/site-packages/web/examples/__init__.pyc' './usr/lib64/python2.7/site-packages/pymol2/make_cmd2.pyo' => './usr/lib64/python2.7/site-packages/pymol2/make_cmd2.pyc' './usr/lib64/python2.7/site-packages/pymol2/cmd2.pyo' => './usr/lib64/python2.7/site-packages/pymol2/cmd2.pyc' './usr/lib64/python2.7/site-packages/pymol2/__init__.pyo' => './usr/lib64/python2.7/site-packages/pymol2/__init__.pyc' Processing files: pymol-1.7.2.1-alt2.svn20140819.qa1 Executing(%doc): /bin/sh -e /usr/src/tmp/rpm-tmp.70024 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd pymol-1.7.2.1 + DOCDIR=/usr/src/tmp/pymol-buildroot/usr/share/doc/pymol-1.7.2.1 + export DOCDIR + rm -rf /usr/src/tmp/pymol-buildroot/usr/share/doc/pymol-1.7.2.1 + /bin/mkdir -p /usr/src/tmp/pymol-buildroot/usr/share/doc/pymol-1.7.2.1 + cp -prL ChangeLog.bz2 AUTHORS README LICENSE COPYING /usr/src/tmp/pymol-buildroot/usr/share/doc/pymol-1.7.2.1 + chmod -R go-w /usr/src/tmp/pymol-buildroot/usr/share/doc/pymol-1.7.2.1 + chmod -R a+rX /usr/src/tmp/pymol-buildroot/usr/share/doc/pymol-1.7.2.1 + exit 0 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.TbGgJK find-provides: running scripts (alternatives,debuginfo,lib,pam,perl,pkgconfig,python,shell,tcl) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.rNG2E6 find-requires: running scripts (cpp,debuginfo,files,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks,tcl) Requires: python-module-pymol = 1.7.2.1-alt2.svn20140819.qa1, /bin/sh, /usr/bin/python2.7 Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.1vavvv Processing files: pymol-devel-1.7.2.1-alt2.svn20140819.qa1 Executing(%doc): /bin/sh -e /usr/src/tmp/rpm-tmp.79875 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd pymol-1.7.2.1 + DOCDIR=/usr/src/tmp/pymol-buildroot/usr/share/doc/pymol-devel-1.7.2.1 + export DOCDIR + rm -rf /usr/src/tmp/pymol-buildroot/usr/share/doc/pymol-devel-1.7.2.1 + /bin/mkdir -p /usr/src/tmp/pymol-buildroot/usr/share/doc/pymol-devel-1.7.2.1 + cp -prL DEVELOPERS PACKAGING /usr/src/tmp/pymol-buildroot/usr/share/doc/pymol-devel-1.7.2.1 + chmod -R go-w /usr/src/tmp/pymol-buildroot/usr/share/doc/pymol-devel-1.7.2.1 + chmod -R a+rX /usr/src/tmp/pymol-buildroot/usr/share/doc/pymol-devel-1.7.2.1 + exit 0 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.93dhyX find-provides: running scripts (alternatives,debuginfo,lib,pam,perl,pkgconfig,python,shell,tcl) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.HVANus find-requires: running scripts (cpp,debuginfo,files,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks,tcl) /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/P.h:20:22: fatal error: os_python.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/P.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/P.h:20:22: fatal error: os_python.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/P.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Vector.h:21:0, from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Map.h:24: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:120:22: fatal error: ov_types.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Map.h: cpp failed, trying c++ mode In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Vector.h:21:0, from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Map.h:24: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:120:22: fatal error: ov_types.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Map.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/CGO.h:20:17: fatal error: Base.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/CGO.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/CGO.h:20:17: fatal error: Base.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/CGO.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Pop.h:20:18: fatal error: Block.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Pop.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Pop.h:20:18: fatal error: Block.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Pop.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Ray.h:20:17: fatal error: Base.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Ray.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Ray.h:20:17: fatal error: Base.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Ray.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Rep.h:20:17: fatal error: Base.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Rep.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Rep.h:20:17: fatal error: Base.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Rep.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Seq.h:20:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Ortho.h:28:18: fatal error: os_gl.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Seq.h: cpp failed, trying c++ mode In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Seq.h:20:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Ortho.h:28:18: fatal error: os_gl.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Seq.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer4/Cmd.h:20:22: fatal error: os_python.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer4/Cmd.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer4/Cmd.h:20:22: fatal error: os_python.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer4/Cmd.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_limits.h:21:0, from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Base.h:21: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:120:22: fatal error: ov_types.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Base.h: cpp failed, trying c++ mode In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_limits.h:21:0, from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Base.h:21: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:120:22: fatal error: ov_types.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Base.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Util.h:21:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:120:22: fatal error: ov_types.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Util.h: cpp failed, trying c++ mode In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Util.h:21:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:120:22: fatal error: ov_types.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Util.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Font.h:21:25: fatal error: PyMOLGlobals.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Font.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Font.h:21:25: fatal error: PyMOLGlobals.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Font.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Text.h:20:25: fatal error: PyMOLGlobals.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Text.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Text.h:20:25: fatal error: PyMOLGlobals.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Text.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/View.h:20:22: fatal error: os_python.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/View.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/View.h:20:22: fatal error: os_python.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/View.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer4/Menu.h:20:22: fatal error: os_python.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer4/Menu.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer4/Menu.h:20:22: fatal error: os_python.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer4/Menu.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer5/main.h:36:22: fatal error: os_python.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer5/main.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer5/main.h:36:22: fatal error: os_python.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer5/main.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Field.h:21:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_python.h:28:19: fatal error: Python.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Field.h: cpp failed, trying c++ mode In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Field.h:21:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_python.h:28:19: fatal error: Python.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Field.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_std.h:21:0, from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/MemoryDebug.h:21, from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/OOMac.h:22: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:120:22: fatal error: ov_types.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/OOMac.h: cpp failed, trying c++ mode In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_std.h:21:0, from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/MemoryDebug.h:21, from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/OOMac.h:22: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:120:22: fatal error: ov_types.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/OOMac.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_gl_pre.h:4:0, from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_gl.h:4: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:120:22: fatal error: ov_types.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_gl.h: cpp failed, trying c++ mode In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_gl_pre.h:4:0, from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_gl.h:4: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:120:22: fatal error: ov_types.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_gl.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Basis.h:20:16: fatal error: Map.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Basis.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Basis.h:20:16: fatal error: Map.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Basis.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Color.h:20:22: fatal error: os_python.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Color.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Color.h:20:22: fatal error: os_python.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Color.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Movie.h:20:22: fatal error: os_python.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Movie.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Movie.h:20:22: fatal error: os_python.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Movie.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Ortho.h:28:18: fatal error: os_gl.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Ortho.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Ortho.h:28:18: fatal error: os_gl.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Ortho.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/PConv.h:20:22: fatal error: os_python.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/PConv.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/PConv.h:20:22: fatal error: os_python.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/PConv.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Scene.h:21:17: fatal error: Base.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Scene.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Scene.h:21:17: fatal error: Base.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Scene.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/VFont.h:20:22: fatal error: os_python.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/VFont.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/VFont.h:20:22: fatal error: os_python.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/VFont.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer4/PopUp.h:20:22: fatal error: os_python.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer4/PopUp.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer4/PopUp.h:20:22: fatal error: os_python.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer4/PopUp.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Vector.h:21:0, from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Sphere.h:21: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:120:22: fatal error: ov_types.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Sphere.h: cpp failed, trying c++ mode In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Vector.h:21:0, from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Sphere.h:21: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:120:22: fatal error: ov_types.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Sphere.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Vector.h:21:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:120:22: fatal error: ov_types.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Vector.h: cpp failed, trying c++ mode In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Vector.h:21:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:120:22: fatal error: ov_types.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Vector.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_std.h:21:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:120:22: fatal error: ov_types.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_std.h: cpp failed, trying c++ mode In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_std.h:21:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:120:22: fatal error: ov_types.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_std.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Wizard.h:20:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Ortho.h:28:18: fatal error: os_gl.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Wizard.h: cpp failed, trying c++ mode In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Wizard.h:20:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Ortho.h:28:18: fatal error: os_gl.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Wizard.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepDot.h:20:16: fatal error: Rep.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepDot.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepDot.h:20:16: fatal error: Rep.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepDot.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/Sculpt.h:20:19: fatal error: Shaker.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/Sculpt.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/Sculpt.h:20:19: fatal error: Shaker.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/Sculpt.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer3/Editor.h:20:18: fatal error: Ortho.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer3/Editor.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer3/Editor.h:20:18: fatal error: Ortho.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer3/Editor.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer3/Seeker.h:20:18: fatal error: Ortho.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer3/Seeker.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer3/Seeker.h:20:18: fatal error: Ortho.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer3/Seeker.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Vector.h:21:0, from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Crystal.h:20: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:120:22: fatal error: ov_types.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Crystal.h: cpp failed, trying c++ mode In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Vector.h:21:0, from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Crystal.h:20: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:120:22: fatal error: ov_types.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Crystal.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Vector.h:21:0, from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Map.h:24, from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Isosurf.h:21: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:120:22: fatal error: ov_types.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Isosurf.h: cpp failed, trying c++ mode In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Vector.h:21:0, from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Map.h:24, from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Isosurf.h:21: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:120:22: fatal error: ov_types.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Isosurf.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Vector.h:21:0, from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Map.h:24, from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Tetsurf.h:21: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:120:22: fatal error: ov_types.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Tetsurf.h: cpp failed, trying c++ mode In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Vector.h:21:0, from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Map.h:24, from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Tetsurf.h:21: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:120:22: fatal error: ov_types.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Tetsurf.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_time.h:21:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:120:22: fatal error: ov_types.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_time.h: cpp failed, trying c++ mode In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_time.h:21:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:120:22: fatal error: ov_types.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_time.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_unix.h:21:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:120:22: fatal error: ov_types.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_unix.h: cpp failed, trying c++ mode In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_unix.h:21:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:120:22: fatal error: ov_types.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_unix.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/ButMode.h:20:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Ortho.h:28:18: fatal error: os_gl.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/ButMode.h: cpp failed, trying c++ mode In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/ButMode.h:20:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Ortho.h:28:18: fatal error: os_gl.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/ButMode.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Control.h:20:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Ortho.h:28:18: fatal error: os_gl.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Control.h: cpp failed, trying c++ mode In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Control.h:20:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Ortho.h:28:18: fatal error: os_gl.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Control.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Extrude.h:20:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Ray.h:20:17: fatal error: Base.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Extrude.h: cpp failed, trying c++ mode In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Extrude.h:20:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Ray.h:20:17: fatal error: Base.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Extrude.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Setting.h:20:22: fatal error: os_python.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Setting.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Setting.h:20:22: fatal error: os_python.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Setting.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/DistSet.h:20:17: fatal error: Base.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/DistSet.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/DistSet.h:20:17: fatal error: Base.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/DistSet.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepMesh.h:20:16: fatal error: Rep.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepMesh.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepMesh.h:20:16: fatal error: Rep.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepMesh.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Vector.h:21:0, from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Triangle.h:21: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:120:22: fatal error: ov_types.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Triangle.h: cpp failed, trying c++ mode In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Vector.h:21:0, from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Triangle.h:21: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:120:22: fatal error: ov_types.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/Triangle.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_types.h:21:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:120:22: fatal error: ov_types.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_types.h: cpp failed, trying c++ mode In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_types.h:21:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:120:22: fatal error: ov_types.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_types.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/FontGLUT.h:21:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Font.h:21:25: fatal error: PyMOLGlobals.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/FontGLUT.h: cpp failed, trying c++ mode In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/FontGLUT.h:21:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Font.h:21:25: fatal error: PyMOLGlobals.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/FontGLUT.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/FontType.h:21:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Font.h:21:25: fatal error: PyMOLGlobals.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/FontType.h: cpp failed, trying c++ mode In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/FontType.h:21:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Font.h:21:25: fatal error: PyMOLGlobals.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/FontType.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Symmetry.h:20:20: fatal error: Crystal.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Symmetry.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Symmetry.h:20:20: fatal error: Crystal.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Symmetry.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/TypeFace.h:20:26: fatal error: PyMOLGlobals.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/TypeFace.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/TypeFace.h:20:26: fatal error: PyMOLGlobals.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/TypeFace.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/AtomInfo.h:20:16: fatal error: Rep.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/AtomInfo.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/AtomInfo.h:20:16: fatal error: Rep.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/AtomInfo.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/CoordSet.h:20:22: fatal error: os_python.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/CoordSet.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/CoordSet.h:20:22: fatal error: os_python.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/CoordSet.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepAngle.h:20:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/DistSet.h:20:17: fatal error: Base.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepAngle.h: cpp failed, trying c++ mode In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepAngle.h:20:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/DistSet.h:20:17: fatal error: Base.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepAngle.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepLabel.h:20:16: fatal error: Rep.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepLabel.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepLabel.h:20:16: fatal error: Rep.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepLabel.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer3/Selector.h:20:22: fatal error: os_python.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer3/Selector.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer3/Selector.h:20:22: fatal error: os_python.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer3/Selector.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_gl_pre.h:4:0, from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_gl.h:4, from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/ShaderMgr.h:19: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:120:22: fatal error: ov_types.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/ShaderMgr.h: cpp failed, trying c++ mode In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_gl_pre.h:4:0, from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_gl.h:4, from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/ShaderMgr.h:19: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:120:22: fatal error: ov_types.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/ShaderMgr.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_gl_pre.h:4:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:120:22: fatal error: ov_types.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_gl_pre.h: cpp failed, trying c++ mode In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_gl_pre.h:4:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:120:22: fatal error: ov_types.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_gl_pre.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_limits.h:21:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:120:22: fatal error: ov_types.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_limits.h: cpp failed, trying c++ mode In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_limits.h:21:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:120:22: fatal error: ov_types.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_limits.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:120:22: fatal error: ov_types.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:120:22: fatal error: ov_types.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_python.h:28:19: fatal error: Python.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_python.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_python.h:28:19: fatal error: Python.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_python.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Character.h:20:20: fatal error: Pixmap.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Character.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Character.h:20:20: fatal error: Pixmap.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/Character.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/ScrollBar.h:20:26: fatal error: PyMOLGlobals.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/ScrollBar.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/ScrollBar.h:20:26: fatal error: PyMOLGlobals.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/ScrollBar.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/GadgetSet.h:20:16: fatal error: Rep.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/GadgetSet.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/GadgetSet.h:20:16: fatal error: Rep.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/GadgetSet.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectCGO.h:20:22: fatal error: os_python.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectCGO.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectCGO.h:20:22: fatal error: os_python.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectCGO.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectMap.h:20:22: fatal error: os_python.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectMap.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectMap.h:20:22: fatal error: os_python.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectMap.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepRibbon.h:20:16: fatal error: Rep.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepRibbon.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepRibbon.h:20:16: fatal error: Rep.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepRibbon.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepSphere.h:20:16: fatal error: Rep.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepSphere.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepSphere.h:20:16: fatal error: Rep.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepSphere.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer3/Executive.h:20:22: fatal error: os_python.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer3/Executive.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer3/Executive.h:20:22: fatal error: os_python.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer3/Executive.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer5/TestPyMOL.h:20:25: fatal error: PyMOLGlobals.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer5/TestPyMOL.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer5/TestPyMOL.h:20:25: fatal error: PyMOLGlobals.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer5/TestPyMOL.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_std.h:21:0, from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/MemoryDebug.h:21, from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/ListMacros.h:24: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:120:22: fatal error: ov_types.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/ListMacros.h: cpp failed, trying c++ mode In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_std.h:21:0, from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/MemoryDebug.h:21, from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/ListMacros.h:24: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:120:22: fatal error: ov_types.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/ListMacros.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectDist.h:20:24: fatal error: PyMOLObject.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectDist.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectDist.h:20:24: fatal error: PyMOLObject.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectDist.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectMesh.h:20:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectMap.h:20:22: fatal error: os_python.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectMesh.h: cpp failed, trying c++ mode In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectMesh.h:20:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectMap.h:20:22: fatal error: os_python.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectMesh.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepCartoon.h:20:16: fatal error: Rep.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepCartoon.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepCartoon.h:20:16: fatal error: Rep.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepCartoon.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepCylBond.h:20:16: fatal error: Rep.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepCylBond.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepCylBond.h:20:16: fatal error: Rep.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepCylBond.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepSurface.h:20:16: fatal error: Rep.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepSurface.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepSurface.h:20:16: fatal error: Rep.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepSurface.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_std.h:21:0, from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/MemoryDebug.h:21: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:120:22: fatal error: ov_types.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/MemoryDebug.h: cpp failed, trying c++ mode In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_std.h:21:0, from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/MemoryDebug.h:21: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:120:22: fatal error: ov_types.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/MemoryDebug.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/PyMOLObject.h:23:17: fatal error: Base.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/PyMOLObject.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/PyMOLObject.h:23:17: fatal error: Base.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer1/PyMOLObject.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectGroup.h:20:22: fatal error: os_python.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectGroup.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectGroup.h:20:22: fatal error: os_python.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectGroup.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectSlice.h:20:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectMap.h:20:22: fatal error: os_python.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectSlice.h: cpp failed, trying c++ mode In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectSlice.h:20:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectMap.h:20:22: fatal error: os_python.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectSlice.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepDihedral.h:20:16: fatal error: Rep.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepDihedral.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepDihedral.h:20:16: fatal error: Rep.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepDihedral.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepDistDash.h:20:16: fatal error: Rep.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepDistDash.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepDistDash.h:20:16: fatal error: Rep.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepDistDash.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepWireBond.h:20:16: fatal error: Rep.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepWireBond.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepWireBond.h:20:16: fatal error: Rep.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepWireBond.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/SculptCache.h:20:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/Sculpt.h:20:19: fatal error: Shaker.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/SculptCache.h: cpp failed, trying c++ mode In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/SculptCache.h:20:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/Sculpt.h:20:19: fatal error: Shaker.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/SculptCache.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectGadget.h:20:22: fatal error: os_python.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectGadget.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectGadget.h:20:22: fatal error: os_python.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectGadget.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectVolume.h:19:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectMap.h:20:22: fatal error: os_python.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectVolume.h: cpp failed, trying c++ mode In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectVolume.h:19:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectMap.h:20:22: fatal error: os_python.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectVolume.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepDistLabel.h:20:16: fatal error: Rep.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepDistLabel.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepDistLabel.h:20:16: fatal error: Rep.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepDistLabel.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepEllipsoid.h:20:16: fatal error: Rep.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepEllipsoid.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepEllipsoid.h:20:16: fatal error: Rep.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepEllipsoid.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepNonbonded.h:20:16: fatal error: Rep.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepNonbonded.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepNonbonded.h:20:16: fatal error: Rep.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepNonbonded.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectSurface.h:20:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectMap.h:20:22: fatal error: os_python.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectSurface.h: cpp failed, trying c++ mode In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectSurface.h:20:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectMap.h:20:22: fatal error: os_python.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectSurface.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer3/PlugIOManager.h:21:26: fatal error: PyMOLGlobals.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer3/PlugIOManager.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer3/PlugIOManager.h:21:26: fatal error: PyMOLGlobals.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer3/PlugIOManager.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_proprietary.h:20:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:120:22: fatal error: ov_types.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_proprietary.h: cpp failed, trying c++ mode In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_proprietary.h:20:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_predef.h:120:22: fatal error: ov_types.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer0/os_proprietary.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectCallback.h:20:22: fatal error: os_python.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectCallback.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectCallback.h:20:22: fatal error: os_python.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectCallback.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectMolecule.h:20:22: fatal error: os_python.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectMolecule.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectMolecule.h:20:22: fatal error: os_python.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectMolecule.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectAlignment.h:20:22: fatal error: os_python.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectAlignment.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectAlignment.h:20:22: fatal error: os_python.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectAlignment.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectGadgetRamp.h:20:22: fatal error: os_python.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectGadgetRamp.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectGadgetRamp.h:20:22: fatal error: os_python.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/ObjectGadgetRamp.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepNonbondedSphere.h:20:16: fatal error: Rep.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepNonbondedSphere.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepNonbondedSphere.h:20:16: fatal error: Rep.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/layer2/RepNonbondedSphere.h: cpp failed In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/champ/champ.h:20:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/champ/os_python.h:19:19: fatal error: Python.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/champ/champ.h: cpp failed, trying c++ mode In file included from /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/champ/champ.h:20:0: /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/champ/os_python.h:19:19: fatal error: Python.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/champ/champ.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/champ/os_python.h:19:19: fatal error: Python.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/champ/os_python.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/champ/os_python.h:19:19: fatal error: Python.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/champ/os_python.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/modules/ExtensionClass.h:94:20: fatal error: Python.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/modules/ExtensionClass.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/modules/ExtensionClass.h:94:20: fatal error: Python.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/modules/ExtensionClass.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:49:68: fatal error: molfile_plugin.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:49:68: fatal error: molfile_plugin.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:30:28: fatal error: molfile_plugin.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:30:28: fatal error: molfile_plugin.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:46:68: fatal error: molfile_plugin.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:46:68: fatal error: molfile_plugin.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:16:28: fatal error: molfile_plugin.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:16:28: fatal error: molfile_plugin.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h: cpp failed /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/uiuc/plugins/molfile_plugin/src/gaussianplugin.h:27:28: fatal error: molfile_plugin.h: No such file or directory compilation terminated. cpp.req: /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/uiuc/plugins/molfile_plugin/src/gaussianplugin.h: cpp failed, trying c++ mode /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/uiuc/plugins/molfile_plugin/src/gaussianplugin.h:27:28: fatal error: molfile_plugin.h: No such file or directory compilation terminated. cpp.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/include/pymol/contrib/uiuc/plugins/molfile_plugin/src/gaussianplugin.h: cpp failed python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/pymol_path/test/cyg: skipping sys python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/pymol_path/test/headerTest.py: skipping headering python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/pymol_path/test/headerTest.py: skipping sys python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/pymol_path/test/inp/B01.py: skipping sys python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/pymol_path/test/inp/B02.py: skipping sys python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/pymol_path/test/inp/B03.py: skipping sys python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/pymol_path/test/inp/B04.py: skipping sys python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/pymol_path/test/inp/B05.py: skipping sys python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/pymol_path/test/inp/B06.py: skipping sys python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/pymol_path/test/inp/B07.py: skipping sys python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/pymol_path/test/inp/B08.py: skipping sys python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/pymol_path/test/inp/B09.py: skipping sys python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/pymol_path/test/inp/B10.py: skipping sys python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/pymol_path/test/inp/B11.py: skipping sys python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/pymol_path/test/run: skipping sys python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/pymol_path/test/show: skipping sys python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/pymol_path/test/trim.py: skipping sys python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/pymol_path/test/win.py: skipping sys shebang.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/pymol_path/test/vdiff: /bin/csh -> /bin/csh (raw, not installed) Requires: python-module-pymol = 1.7.2.1-alt2.svn20140819.qa1, python2.7(pymol), /bin/csh, /usr/bin/python, /usr/lib64/python2.7/site-packages, python-modules, python2.7(chempy) Obsoletes: libpymol-devel Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.bFwfPi Processing files: python-module-pymol-1.7.2.1-alt2.svn20140819.qa1 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.FgwUbc find-provides: running scripts (alternatives,debuginfo,lib,pam,perl,pkgconfig,python,shell,tcl) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.91cHfb find-requires: running scripts (cpp,debuginfo,files,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks,tcl) python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_wx/__init__.py: skipping sys python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/__init__.py: skipping __main__ /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/__init__.py: line=35 IGNORE (for REQ=slight and deep=8) module=invocation /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/__init__.py: line=124 IGNORE (for REQ=slight and deep=8) module=thread /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/__init__.py: line=125 IGNORE (for REQ=slight and deep=8) module=threading /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/__init__.py: line=126 IGNORE (for REQ=slight and deep=8) module=os /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/__init__.py: line=127 IGNORE (for REQ=slight and deep=8) module=sys /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/__init__.py: line=128 IGNORE (for REQ=slight and deep=8) module=re /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/__init__.py: line=129 IGNORE (for REQ=slight and deep=8) module=string /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/__init__.py: line=130 IGNORE (for REQ=slight and deep=8) module=time /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/__init__.py: line=131 IGNORE (for REQ=slight and deep=8) module=traceback /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/__init__.py: line=132 IGNORE (for REQ=slight and deep=8) module=math /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/__init__.py: line=180 IGNORE (for REQ=slight and deep=12) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/__init__.py: line=265 IGNORE (for REQ=slight and deep=16) module=socket /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/__init__.py: line=382 IGNORE (for REQ=slight and deep=20) module=multiprocessing /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/__init__.py: line=413 IGNORE (for REQ=slight and deep=24) module=rpc /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/__init__.py: line=427 IGNORE (for REQ=slight and deep=16) module=os /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/__init__.py: line=446 IGNORE (for REQ=slight and deep=12) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/__init__.py: line=448 IGNORE (for REQ=slight and deep=8) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/__init__.py: line=453 IGNORE (for REQ=slight and deep=12) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/__init__.py: line=463 IGNORE (for REQ=slight and deep=12) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/__init__.py: line=481 IGNORE (for REQ=slight and deep=12) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/__init__.py: line=487 IGNORE (for REQ=slight and deep=12) module=xwin /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/__init__.py: line=502 IGNORE (for REQ=slight and deep=12) module=pymol python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/api.py: hiding importing, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/api.py: hiding creating, which SEEMS TO BE SELF-SATISFIED python.req: 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deep=8) module=re /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/commanding.py: line=20 IGNORE (for REQ=slight and deep=8) module=os /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/commanding.py: line=21 IGNORE (for REQ=slight and deep=8) module=time /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/commanding.py: line=22 IGNORE (for REQ=slight and deep=8) module=threading /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/commanding.py: line=23 IGNORE (for REQ=slight and deep=8) module=traceback /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/commanding.py: line=24 IGNORE (for REQ=slight and deep=8) module=parsing /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/commanding.py: line=25 IGNORE (for REQ=slight and deep=8) module=cmd /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/commanding.py: line=26 IGNORE (for REQ=slight and deep=8) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/commanding.py: line=28 IGNORE (for REQ=slight and deep=8) module=cmd /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/commanding.py: line=547 possible relative import from ., UNIMPLEMENTED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/completing.py: hiding cmd, which SEEMS TO BE SELF-SATISFIED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/completing.py: line=10 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/completing.py: line=26 IGNORE (for REQ=slight and deep=8) 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REQ=slight and deep=16) module=zlib /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/importing.py: line=418 IGNORE (for REQ=slight and deep=20) module=numpy /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/importing.py: line=488 IGNORE (for REQ=slight and deep=16) module=web /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/importing.py: line=497 IGNORE (for REQ=slight and deep=20) module=urllib /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/importing.py: line=556 IGNORE (for REQ=slight and deep=24) module=webbrowser /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/importing.py: line=562 IGNORE (for REQ=slight and deep=24) module=urllib /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/importing.py: line=752 IGNORE (for REQ=slight and deep=28) module=epymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/importing.py: line=968 IGNORE (for REQ=slight and deep=24) module=epymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/importing.py: line=1367 IGNORE (for REQ=slight and deep=12) module=string /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/importing.py: line=1508 IGNORE (for REQ=slight and deep=12) module=glob /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/importing.py: line=1522 IGNORE (for REQ=slight and deep=20) module=pymol python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/internal.py: hiding cmd, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/internal.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/internal.py: skipping thread python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/internal.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/internal.py: hiding cmd, which SEEMS TO BE SELF-SATISFIED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/internal.py: line=260 IGNORE (for REQ=slight and deep=8) module=sys /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/internal.py: line=307 IGNORE (for REQ=slight and deep=16) module=urllib2 /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/internal.py: line=319 IGNORE (for REQ=slight and deep=12) module=cStringIO /usr/lib/rpm/python.req.py: 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line=600 IGNORE (for REQ=slight and deep=16) module=freemol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/moving.py: line=17 IGNORE (for REQ=slight and deep=8) module=thread /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/moving.py: line=18 IGNORE (for REQ=slight and deep=8) module=string /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/moving.py: line=20 IGNORE (for REQ=slight and deep=8) module=selector /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/moving.py: line=21 IGNORE (for REQ=slight and deep=8) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/moving.py: line=22 IGNORE (for REQ=slight and deep=8) module=re /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/moving.py: line=23 IGNORE (for REQ=slight and deep=8) module=cmd /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/moving.py: line=24 IGNORE (for REQ=slight and deep=8) module=cmd /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/parser.py: line=21 IGNORE (for REQ=slight and deep=8) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/parser.py: line=22 IGNORE (for REQ=slight and deep=8) module=traceback /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/parser.py: line=23 IGNORE (for REQ=slight and deep=8) module=string /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/parser.py: line=24 IGNORE (for REQ=slight and deep=8) module=re /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/parser.py: line=25 IGNORE (for 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line=131 IGNORE (for REQ=slight and deep=8) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/util.py: line=132 IGNORE (for REQ=slight and deep=8) module=collections /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/util.py: line=217 IGNORE (for REQ=slight and deep=12) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/util.py: line=340 IGNORE (for REQ=slight and deep=8) module=chempy /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/viewing.py: line=17 IGNORE (for REQ=slight and deep=8) module=thread /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/viewing.py: line=18 IGNORE (for REQ=slight and deep=8) module=threading /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/viewing.py: line=19 IGNORE (for REQ=slight and deep=8) module=string /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/viewing.py: line=20 IGNORE (for REQ=slight and deep=8) module=types /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/viewing.py: line=21 IGNORE (for REQ=slight and deep=8) module=traceback /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/viewing.py: line=22 IGNORE (for REQ=slight and deep=8) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/viewing.py: line=23 IGNORE (for REQ=slight and deep=8) module=selector /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/viewing.py: line=24 IGNORE (for REQ=slight and deep=8) module=copy /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/viewing.py: line=25 IGNORE (for REQ=slight and deep=8) module=parsing /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/viewing.py: line=26 IGNORE (for REQ=slight and deep=8) module=re /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/viewing.py: line=27 IGNORE (for REQ=slight and deep=8) module=cmd /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/viewing.py: line=29 IGNORE (for REQ=slight and deep=8) module=cmd /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/viewing.py: line=38 IGNORE (for REQ=slight and deep=8) module=thread /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/viewing.py: line=1182 IGNORE (for REQ=slight and deep=12) module=os /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/viewing.py: line=2532 possible relative import from ., UNIMPLEMENTED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/viewing.py: line=2761 IGNORE (for REQ=slight and deep=8) module=setting python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/__init__.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/annotation.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/annotation.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/annotation.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/appearance.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/appearance.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/appearance.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/benchmark.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/benchmark.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/benchmark.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/box.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/box.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/box.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/box.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/charge.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/charge.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/charge.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/cleanup.py: skipping sys python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/cleanup.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/cleanup.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/cleanup.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/demo.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/demo.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/demo.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/demo.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/demo.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/demo.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/density.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/density.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/density.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/distance.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/distance.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/distance.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/dragging.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/dragging.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/dragging.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/fedora.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/fedora.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/fedora.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/filter.py: skipping sys python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/filter.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/filter.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/label.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/label.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/label.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/measurement.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/measurement.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/measurement.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/message.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/message.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/message.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/mutagenesis.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: 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which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/pseudoatom.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/renaming.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/renaming.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/renaming.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/sculpting.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/sculpting.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: 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which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/stereodemo.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/stereodemo.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/stereodemo.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/stereodemo.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/stereodemo.py: line=101 IGNORE (for REQ=slight and deep=11) module=chempy python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizard/toggle.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: 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/usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizarding.py: line=21 IGNORE (for REQ=slight and deep=8) module=cmd /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizarding.py: line=22 IGNORE (for REQ=slight and deep=8) module=cmd /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizarding.py: line=26 IGNORE (for REQ=slight and deep=8) module=cPickle /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizarding.py: line=27 IGNORE (for REQ=slight and deep=8) module=traceback /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/wizarding.py: line=31 IGNORE (for REQ=slight and deep=12) module=wizard python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/xray.py: skipping sys /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/xray.py: line=20 IGNORE (for REQ=slight and deep=8) module=cmd /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/xray.py: line=29 IGNORE (for REQ=slight and deep=12) module=sglite /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol/xwin.py: line=7 IGNORE (for REQ=slight and deep=8) module=popen2 python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol2/__init__.py: skipping __main__ python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol2/__init__.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol2/__init__.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol2/__init__.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol2/__init__.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol2/__init__.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol2/__init__.py: skipping sys python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol2/__init__.py: hiding cmd2, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol2/cmd2.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol2/cmd2.py: hiding pymol, which SEEMS TO BE SELF-SATISFIED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol2/cmd2.py: line=63 IGNORE (for REQ=slight and deep=11) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol2/cmd2.py: line=91 IGNORE (for REQ=slight and deep=11) module=pymol python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol2/make_cmd2.py: skipping sys /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pymol2/make_cmd2.py: line=529 IGNORE (for REQ=slight and deep=8) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/web/pymolhttpd.py: line=18 IGNORE (for REQ=slight and deep=8) module=simplejson /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/web/pymolhttpd.py: line=20 IGNORE (for REQ=slight and deep=8) module=json python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/web/pymolhttpd.py: skipping sys /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/web/pymolhttpd.py: line=429 IGNORE (for REQ=slight and deep=19) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/web/pymolhttpd.py: line=701 IGNORE (for REQ=slight and deep=19) module=urllib Provides: python2.7-module-pymol = 1.7.2.1-alt2.svn20140819.qa1, python2.7(pymol), python2.7(pmg_wx), python2.7(pymol._cmd), python2.7(pymol.api), python2.7(pymol.callback), python2.7(pymol.cgo), python2.7(pymol.checking), python2.7(pymol.cmd), python2.7(pymol.colorramping), python2.7(pymol.commanding), python2.7(pymol.completing), python2.7(pymol.computing), python2.7(pymol.constants), python2.7(pymol.constants_palette), python2.7(pymol.contrib), python2.7(pymol.controlling), python2.7(pymol.creating), python2.7(pymol.editing), python2.7(pymol.editor), python2.7(pymol.embed), python2.7(pymol.embed.epymol), python2.7(pymol.embed.wxpymol), python2.7(pymol.experimenting), python2.7(pymol.exporting), python2.7(pymol.externing), python2.7(pymol.feedingback), python2.7(pymol.fitting), python2.7(pymol.gui), python2.7(pymol.headering), python2.7(pymol.helping), python2.7(pymol.importing), python2.7(pymol.internal), python2.7(pymol.invocation), python2.7(pymol.keyboard), python2.7(pymol.keywords), python2.7(pymol.locking), python2.7(pymol.m4x), python2.7(pymol.menu), python2.7(pymol.monitoring), python2.7(pymol.movie), python2.7(pymol.moving), python2.7(pymol.opengl), python2.7(pymol.opengl.gl), python2.7(pymol.opengl.glu), python2.7(pymol.opengl.glut), python2.7(pymol.parser), python2.7(pymol.parsing), python2.7(pymol.plugins), python2.7(pymol.plugins.installation), python2.7(pymol.plugins.legacysupport), python2.7(pymol.plugins.managergui), python2.7(pymol.plugins.repository), python2.7(pymol.povray), python2.7(pymol.preset), python2.7(pymol.querying), python2.7(pymol.rpc), python2.7(pymol.selecting), python2.7(pymol.selector), python2.7(pymol.setting), python2.7(pymol.shortcut), python2.7(pymol.util), python2.7(pymol.vfont), python2.7(pymol.viewing), python2.7(pymol.wizard), python2.7(pymol.wizard.annotation), python2.7(pymol.wizard.appearance), python2.7(pymol.wizard.benchmark), python2.7(pymol.wizard.box), python2.7(pymol.wizard.charge), python2.7(pymol.wizard.cleanup), python2.7(pymol.wizard.demo), python2.7(pymol.wizard.density), python2.7(pymol.wizard.distance), python2.7(pymol.wizard.dragging), python2.7(pymol.wizard.fedora), python2.7(pymol.wizard.filter), python2.7(pymol.wizard.label), python2.7(pymol.wizard.measurement), python2.7(pymol.wizard.message), python2.7(pymol.wizard.mutagenesis), python2.7(pymol.wizard.pair_fit), python2.7(pymol.wizard.pseudoatom), python2.7(pymol.wizard.renaming), python2.7(pymol.wizard.sculpting), python2.7(pymol.wizard.security), python2.7(pymol.wizard.stereodemo), python2.7(pymol.wizard.toggle), python2.7(pymol.wizarding), python2.7(pymol.xray), python2.7(pymol.xwin), python2.7(pymol2), python2.7(pymol2.cmd2), python2.7(pymol2.make_cmd2), python2.7(web.pymolhttpd) Requires: python = 2.7, python-module-webpy, /usr/lib64/python2.7/site-packages, libGL.so.1()(64bit) >= set:ohKMwXx7IbLRjZk3H4kxPW22UFAZb2NtHAA6E4aGHjCPqjZskuKiJIauk9EQKeIhRLCTi0IyY6t6BSogMrHYrPcGN4kil58rUt0qGpPCaAjEoRraCO5dT3FDNedVYKIZ0TCYpUN3qzUCCh46HFJMlmyATqAegD0pbw5T3Za3Pf5aeikLyH2ZHIVqrthD7bXFBwGJlhFhoVioJ31PyeOZG5Ip2jYyCUaAcSVcNIniOtkSoH45U2pbB02uXbExNED2W08, libGLEW.so.2.0()(64bit) >= set:pjTPEI7u86tTfeffYoNS68ktMZkgsWKSFLPKgHEYdmv8QivwpMavv3ySNzzEDZ1Q3CxEaDHCh8K4VaZ5wtf44lKlCzbzHiIWPtcMBsku98V7IOHVTzqQwep9hXlitweaRfqFvap1hAZ0wHWzZDIx6UVYRZAIrldvZJ40PpDDepsgts2, libGLU.so.1()(64bit) >= set:jhZbTkQ1, libc.so.6(GLIBC_2.14)(64bit), libc.so.6(GLIBC_2.2.5)(64bit), libc.so.6(GLIBC_2.3)(64bit), libc.so.6(GLIBC_2.3.4)(64bit), libc.so.6(GLIBC_2.4)(64bit), libc.so.6(GLIBC_2.7)(64bit), libfreetype.so.6()(64bit) >= set:lhcEBwdAEvqYfVSRnZ8QGCkI4X2, libgcc_s.so.1(GCC_3.0)(64bit), libglut.so.3()(64bit) >= set:kfkTL75jtuaikqKPZk12isWBRh6eXRgzznUxWAqWLrliB8Ogxk2DT6NRRR4d, libm.so.6(GLIBC_2.15)(64bit), libm.so.6(GLIBC_2.2.5)(64bit), libpng15.so.15()(64bit) >= set:lgHMZqVB6LYmqGEnT4ZwZmEpuhias5giC1mHUudqYPqPorxfN0qmbIINhZIClPrm8fk, libpng15.so.15(PNG15_0)(64bit), libpthread.so.0(GLIBC_2.2.5)(64bit), libpython2.7.so.1.0()(64bit) >= set:ohlgdZpbBLCZxdUsXE4Rm8K4gbxhsfAAHelXaBKJFLLo1qQKHMPZ0iKlwfn1tkICUlp1QVKFx8hcZwuYNUAl3CVAP7msc9h08TVaXwOh80EsUixNeUbkobEPFrzExHb2kB6M9mJs1nQHZczifhiPGx1wlO1FjxPg0z4xdxL5E7FvbavmBVPZyrVXgiM7, libstdc++.so.6(CXXABI_1.3)(64bit), libstdc++.so.6(GLIBCXX_3.4)(64bit), libstdc++.so.6(GLIBCXX_3.4.11)(64bit), libstdc++.so.6(GLIBCXX_3.4.20)(64bit), libstdc++.so.6(GLIBCXX_3.4.21)(64bit), libstdc++.so.6(GLIBCXX_3.4.9)(64bit), python-modules, python2.7(OpenGL), python2.7(Pmw), python2.7(Tkinter), python2.7(chempy), python2.7(inspect), python2.7(numpy), python2.7(pmg_tk), python2.7(tkFileDialog), python2.7(wxPython), rtld(GNU_HASH) Requires(rpmlib): rpmlib(SetVersions) Obsoletes: libpymol Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.VWNZLv Creating python-module-pymol-debuginfo package Processing files: python-module-chempy-1.7.2.1-alt2.svn20140819.qa1 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.BiwDmT find-provides: running scripts (alternatives,debuginfo,lib,pam,perl,pkgconfig,python,shell,tcl) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.Dhv5Sj find-requires: running scripts (cpp,debuginfo,files,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks,tcl) lib.req: WARNING: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/champ/_champ.so: underlinked libraries: /lib64/libm.so.6 /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/__init__.py: line=141 IGNORE (for REQ=slight and deep=15) module=urllib /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/__init__.py: line=145 IGNORE (for REQ=slight and deep=15) module=StringIO /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/__init__.py: line=147 IGNORE (for REQ=slight and deep=15) module=gzip python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/arc.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/arc.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/bmin/__init__.py: skipping sys python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/bmin/__init__.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/bmin/commands.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/bmin/realtime.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/bmin/realtime.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/bmin/realtime.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/bmin/realtime.py: line=17 IGNORE (for REQ=slight and deep=8) module=molobj /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/bmin/realtime.py: line=18 IGNORE (for REQ=slight and deep=8) module=typer /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/bmin/realtime.py: line=19 IGNORE (for REQ=slight and deep=8) module=rules python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/bmin/state.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/bmin/state.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/bmin/util.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/bmin/util.py: line=11 IGNORE (for REQ=slight and deep=8) module=pymol python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/cc1.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/cc1.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/cex.py: line=377 IGNORE (for REQ=slight and deep=8) module=StringIO /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/champ/__init__.py: line=16 IGNORE (for REQ=slight and deep=8) module=_champ python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/champ/assign.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/champ/assign.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/champ/assign.py: line=62 IGNORE (for REQ=slight and deep=12) module=chempy /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/champ/assign.py: line=166 IGNORE (for REQ=slight and deep=12) module=chempy python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/cif.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/cif.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/cif.py: line=661 IGNORE (for REQ=slight and deep=19) module=pymol python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/dictdb.py: skipping sys /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/dictdb.py: line=642 IGNORE (for REQ=slight and deep=8) module=os /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/dictdb.py: line=759 IGNORE (for REQ=slight and deep=8) module=random python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/fast/__init__.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/fast/__init__.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/fragments/__init__.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/fragments/__init__.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/gamess1.py: skipping sys python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/gamess1.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/gamess1.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/gamess1.py: line=365 IGNORE (for REQ=slight and deep=11) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/gamess1.py: line=366 IGNORE (for REQ=slight and deep=11) module=tinker python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/gms.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/gms.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/hetatm.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/hetatm.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/hetatm.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/hetatm.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/io.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/io.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/io.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/io.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/io.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/io.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/io.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/io.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/io.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/io.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/io.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/lst.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/mae.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/mae.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/mmd.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/mmd.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/models.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/models.py: hiding cpv, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/mol.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/mol.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/mol.py: line=19 IGNORE (for REQ=slight and deep=8) module=pymol python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/mol2.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/mol2.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/pdb.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/pdb.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/pkl.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/place.py: hiding bond_amber, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/place.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/place.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/place.py: line=322 IGNORE (for REQ=slight and deep=8) module=random /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/place.py: line=323 IGNORE (for REQ=slight and deep=8) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/place.py: line=324 IGNORE (for REQ=slight and deep=8) module=chempy python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/protein.py: hiding bond_amber, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/protein.py: hiding protein_residues, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/protein.py: hiding protein_amber, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/protein.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/protein.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/protein.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/protein.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/sdf.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/sdf.py: line=145 IGNORE (for REQ=slight and deep=15) module=urllib python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/solvate.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/solvate.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/solvate.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/tinker/__init__.py: skipping sys python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/tinker/__init__.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/tinker/amber.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/tinker/keyword.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/tinker/realtime.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/tinker/realtime.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/tinker/realtime.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/tinker/realtime.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/tinker/realtime.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/tinker/realtime.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/tinker/realtime.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/tinker/realtime.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/tinker/realtime.py: line=36 IGNORE (for REQ=slight and deep=8) module=molobj /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/tinker/realtime.py: line=37 IGNORE (for REQ=slight and deep=8) module=typer /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/tinker/realtime.py: line=38 IGNORE (for REQ=slight and deep=8) module=rules python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/tinker/state.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/tinker/state.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/xyz.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/chempy/xyz.py: hiding chempy, which SEEMS TO BE SELF-SATISFIED Provides: python2.7-module-pymol = 1.7.2.1-alt2.svn20140819.qa1, python2.7(chempy), python2.7(chempy.arc), python2.7(chempy.bmin), python2.7(chempy.bmin.commands), python2.7(chempy.bmin.realtime), python2.7(chempy.bmin.state), python2.7(chempy.bmin.util), python2.7(chempy.bond_amber), python2.7(chempy.bond_mmff), python2.7(chempy.bonds), python2.7(chempy.brick), python2.7(chempy.cc1), python2.7(chempy.cex), python2.7(chempy.champ), python2.7(chempy.champ._champ), python2.7(chempy.champ.amber99), python2.7(chempy.champ.assign), python2.7(chempy.champ.formal_charges), python2.7(chempy.charge), python2.7(chempy.cif), python2.7(chempy.cpv), python2.7(chempy.dictdb), python2.7(chempy.fast), python2.7(chempy.fragments), python2.7(chempy.gamess1), python2.7(chempy.gms), python2.7(chempy.hetatm), python2.7(chempy.io), python2.7(chempy.lst), python2.7(chempy.mae), python2.7(chempy.map), python2.7(chempy.mass), python2.7(chempy.mmd), python2.7(chempy.models), python2.7(chempy.mol), python2.7(chempy.mol2), python2.7(chempy.neighbor), python2.7(chempy.pdb), python2.7(chempy.pkl), python2.7(chempy.place), python2.7(chempy.protein), python2.7(chempy.protein_amber), python2.7(chempy.protein_amber99), python2.7(chempy.protein_mmff), python2.7(chempy.protein_residues), python2.7(chempy.sdf), python2.7(chempy.solvate), python2.7(chempy.tinker), python2.7(chempy.tinker.amber), python2.7(chempy.tinker.keyword), python2.7(chempy.tinker.realtime), python2.7(chempy.tinker.state), python2.7(chempy.water_amber), python2.7(chempy.water_residues), python2.7(chempy.xyz) Requires: python-module-pymol = 1.7.2.1-alt2.svn20140819.qa1, python = 2.7, python2.7(pymol), /usr/lib64/python2.7/site-packages, libc.so.6(GLIBC_2.2.5)(64bit), libc.so.6(GLIBC_2.3.4)(64bit), libc.so.6(GLIBC_2.4)(64bit), libpython2.7.so.1.0()(64bit) >= set:ojlg5MxXZmrCxdSJ2MXxRMy3vnwlHD0Mvp7OOgKEyONgtV2thL4p80nsyWxYzQVmkgFa2, python-modules, python2.7(numpy), rtld(GNU_HASH) Requires(rpmlib): rpmlib(SetVersions) Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.9L02t0 Creating python-module-chempy-debuginfo package Processing files: python-module-pmg_tk-1.7.2.1-alt2.svn20140819.qa1 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.bFq42J find-provides: running scripts (alternatives,debuginfo,lib,pam,perl,pkgconfig,python,shell,tcl) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.TDodzw find-requires: running scripts (cpp,debuginfo,files,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks,tcl) python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/PMGApp.py: skipping sys python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/PMGApp.py: skipping __builtin__ /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/PMGApp.py: line=36 IGNORE (for REQ=slight and deep=12) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/PMGApp.py: line=193 IGNORE (for REQ=slight and deep=15) module=time /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/PMGApp.py: line=230 IGNORE (for REQ=slight and deep=11) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/PMGApp.py: line=334 IGNORE (for REQ=slight and deep=15) module=platform python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/TextEditor.py: skipping sys python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/__init__.py: hiding PMGApp, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/__init__.py: skipping sys python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/skins/demo/__init__.py: hiding pmg_tk, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/skins/normal/__init__.py: skipping sys python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/skins/normal/__init__.py: hiding pmg_tk, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/skins/normal/__init__.py: hiding pmg_tk, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/skins/normal/__init__.py: hiding pmg_tk, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/skins/normal/__init__.py: hiding pmg_tk, which SEEMS TO BE SELF-SATISFIED python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/skins/normal/__init__.py: hiding builder, which SEEMS TO BE SELF-SATISFIED /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/skins/normal/__init__.py: line=422 IGNORE (for REQ=slight and deep=19) module=tkFont /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/skins/normal/__init__.py: line=603 IGNORE (for REQ=slight and deep=31) module=pmg_tk /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/skins/normal/__init__.py: line=918 IGNORE (for REQ=slight and deep=11) module=tkSimpleDialog /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/skins/normal/__init__.py: line=919 IGNORE (for REQ=slight and deep=11) module=pmg_tk /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/skins/normal/__init__.py: line=986 IGNORE (for REQ=slight and deep=15) module=freemol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/skins/normal/__init__.py: line=1100 IGNORE (for REQ=slight and deep=15) module=webbrowser python.req: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/skins/normal/builder.py: skipping sys /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/startup/apbs_tools.py: line=329 IGNORE (for REQ=slight and deep=8) module=subprocess /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/startup/apbs_tools.py: line=329 IGNORE (for REQ=slight and deep=8) module=tempfile /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/startup/apbs_tools.py: line=884 IGNORE (for REQ=slight and deep=15) module=freemol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/startup/apbs_tools.py: line=1112 IGNORE (for REQ=slight and deep=15) module=webbrowser /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/startup/apbs_tools.py: line=1115 IGNORE (for REQ=slight and deep=15) module=webbrowser /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/startup/apbs_tools.py: line=1200 IGNORE (for REQ=slight and deep=15) module=imp /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/startup/apbs_tools.py: line=1678 IGNORE (for REQ=slight and deep=19) module=imp /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/startup/apbs_tools.py: line=1686 IGNORE (for REQ=slight and deep=23) module=pdb2pqr /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/startup/apbs_tools.py: line=1688 IGNORE (for REQ=slight and deep=15) module=pdb2pqr /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/startup/apbs_tools.py: line=1691 IGNORE (for REQ=slight and deep=15) module=pdb2pqr /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/startup/apbs_tools.py: line=1784 IGNORE (for REQ=slight and deep=11) module=chempy /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/startup/remote_pdb_load.py: line=45 IGNORE (for REQ=slight and deep=11) module=tkSimpleDialog /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/startup/remote_pdb_load.py: line=46 IGNORE (for REQ=slight and deep=11) module=tkMessageBox /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/startup/remote_pdb_load.py: line=47 IGNORE (for REQ=slight and deep=11) module=urllib /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/startup/remote_pdb_load.py: line=48 IGNORE (for REQ=slight and deep=11) module=gzip /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/startup/remote_pdb_load.py: line=49 IGNORE (for REQ=slight and deep=11) module=os /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/startup/remote_pdb_load.py: line=50 IGNORE (for REQ=slight and deep=11) module=string /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/volume.py: line=12 IGNORE (for REQ=slight and deep=8) module=pymol /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/volume.py: line=402 IGNORE (for REQ=slight and deep=11) module=random /usr/lib/rpm/python.req.py: /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/volume.py: line=1011 IGNORE (for REQ=slight and deep=8) module=Pmw shebang.req.files: executable script /usr/src/tmp/pymol-buildroot/usr/lib64/python2.7/site-packages/pmg_tk/startup/apbs_tools.py is not executable Provides: python2.7-module-pymol = 1.7.2.1-alt2.svn20140819.qa1, python2.7(pmg_tk), python2.7(pmg_tk.ColorEditor), python2.7(pmg_tk.Demo), python2.7(pmg_tk.PMGApp), python2.7(pmg_tk.PyMOLMapLoad), python2.7(pmg_tk.SetEditor), python2.7(pmg_tk.Setting), python2.7(pmg_tk.TextEditor), python2.7(pmg_tk.skins), python2.7(pmg_tk.skins.demo), python2.7(pmg_tk.skins.normal), python2.7(pmg_tk.skins.normal.ModalWindow), python2.7(pmg_tk.skins.normal.builder), python2.7(pmg_tk.startup), python2.7(pmg_tk.startup.apbs_tools), python2.7(pmg_tk.startup.remote_pdb_load), python2.7(pmg_tk.volume) Requires: python-module-pymol = 1.7.2.1-alt2.svn20140819.qa1, python = 2.7, python2.7(pymol), /usr/lib64/python2.7/site-packages, python-modules, python2.7(Pmw), python2.7(Tkinter), python2.7(chempy), python2.7(distutils), python2.7(tkColorChooser), python2.7(tkFileDialog), python2.7(tkMessageBox) Finding debuginfo files (using /usr/lib/rpm/find-debuginfo-files) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.Vs6Cjr Processing files: pymol-doc-1.7.2.1-alt2.svn20140819.qa1 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.BaCKZo find-provides: running scripts (alternatives,debuginfo,lib,pam,perl,pkgconfig,python,shell,tcl) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.Vg4Oyp find-requires: running scripts (cpp,debuginfo,files,lib,pam,perl,pkgconfig,pkgconfiglib,python,rpmlib,shebang,shell,static,symlinks,tcl) Processing files: python-module-pymol-debuginfo-1.7.2.1-alt2.svn20140819.qa1 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.Bgxyst find-provides: running scripts (debuginfo) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.7IbU8z find-requires: running scripts (debuginfo) Requires: python-module-pymol = 1.7.2.1-alt2.svn20140819.qa1, debug64(libGL.so.1), debug64(libGLEW.so.2.0), debug64(libGLU.so.1), debug64(libc.so.6), debug64(libfreetype.so.6), debug64(libgcc_s.so.1), debug64(libglut.so.3), debug64(libm.so.6), debug64(libpng15.so.15), debug64(libpthread.so.0), debug64(libpython2.7.so.1.0), debug64(libstdc++.so.6) Processing files: python-module-chempy-debuginfo-1.7.2.1-alt2.svn20140819.qa1 Finding Provides (using /usr/lib/rpm/find-provides) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.PDTDDJ find-provides: running scripts (debuginfo) Finding Requires (using /usr/lib/rpm/find-requires) Executing: /bin/sh -e /usr/src/tmp/rpm-tmp.teYoXV find-requires: running scripts (debuginfo) Requires: python-module-chempy = 1.7.2.1-alt2.svn20140819.qa1, debug64(libc.so.6), debug64(libpython2.7.so.1.0) Adding to pymol-devel a strict dependency on python-module-chempy Adding to python-module-pymol a strict dependency on python-module-chempy Adding to python-module-pymol a strict dependency on python-module-pmg_tk Removing 1 extra deps from pymol-devel due to dependency on python-module-pymol Removing 1 extra deps from pymol-devel due to dependency on python-module-chempy Removing 1 extra deps from python-module-pymol due to dependency on python-module-chempy Removing 1 extra deps from python-module-chempy due to dependency on python-module-pymol Removing 1 extra deps from python-module-pymol due to dependency on python-module-pmg_tk Removing 1 extra deps from python-module-pmg_tk due to dependency on python-module-pymol Removing 1 extra deps from python-module-pmg_tk due to dependency on python-module-chempy Removing 2 extra deps from pymol-devel due to repentancy on python-module-pymol Removing 8 extra deps from python-module-pymol due to repentancy on python-module-chempy Removing 3 extra deps from python-module-pymol due to repentancy on python-module-pmg_tk Removing 2 extra deps from python-module-chempy due to repentancy on python-module-pmg_tk warning: Installed (but unpackaged) file(s) found: /usr/lib64/python2.7/site-packages/web/__init__.py /usr/lib64/python2.7/site-packages/web/__init__.pyc /usr/lib64/python2.7/site-packages/web/__init__.pyo /usr/lib64/python2.7/site-packages/web/examples/__init__.py /usr/lib64/python2.7/site-packages/web/examples/__init__.pyc /usr/lib64/python2.7/site-packages/web/examples/__init__.pyo /usr/lib64/python2.7/site-packages/web/examples/justhttpd.py /usr/lib64/python2.7/site-packages/web/examples/justhttpd.pyc /usr/lib64/python2.7/site-packages/web/examples/justhttpd.pyo Wrote: /usr/src/RPM/RPMS/x86_64/pymol-1.7.2.1-alt2.svn20140819.qa1.x86_64.rpm Wrote: /usr/src/RPM/RPMS/x86_64/pymol-devel-1.7.2.1-alt2.svn20140819.qa1.x86_64.rpm Wrote: /usr/src/RPM/RPMS/x86_64/python-module-pymol-1.7.2.1-alt2.svn20140819.qa1.x86_64.rpm Wrote: /usr/src/RPM/RPMS/x86_64/python-module-chempy-1.7.2.1-alt2.svn20140819.qa1.x86_64.rpm Wrote: /usr/src/RPM/RPMS/x86_64/python-module-pmg_tk-1.7.2.1-alt2.svn20140819.qa1.x86_64.rpm Wrote: /usr/src/RPM/RPMS/noarch/pymol-doc-1.7.2.1-alt2.svn20140819.qa1.noarch.rpm Wrote: /usr/src/RPM/RPMS/x86_64/python-module-pymol-debuginfo-1.7.2.1-alt2.svn20140819.qa1.x86_64.rpm Wrote: /usr/src/RPM/RPMS/x86_64/python-module-chempy-debuginfo-1.7.2.1-alt2.svn20140819.qa1.x86_64.rpm 169.99user 8.89system 6:34.63elapsed 45%CPU (0avgtext+0avgdata 253872maxresident)k 0inputs+0outputs (0major+3934688minor)pagefaults 0swaps 188.61user 13.92system 7:16.09elapsed 46%CPU (0avgtext+0avgdata 253872maxresident)k 24inputs+0outputs (0major+4469957minor)pagefaults 0swaps --- python-module-pymol-1.7.2.1-alt2.svn20140819.qa1.x86_64.rpm.repo 2016-04-06 23:06:43.000000000 +0000 +++ python-module-pymol-1.7.2.1-alt2.svn20140819.qa1.x86_64.rpm.hasher 2019-04-14 03:27:50.368518696 +0000 @@ -717,3 +717,3 @@ Requires: libGL.so.1()(64bit) >= set:ohKMwXx7IbLRjZk3H4kxPW22UFAZb2NtHAA6E4aGHjCPqjZskuKiJIauk9EQKeIhRLCTi0IyY6t6BSogMrHYrPcGN4kil58rUt0qGpPCaAjEoRraCO5dT3FDNedVYKIZ0TCYpUN3qzUCCh46HFJMlmyATqAegD0pbw5T3Za3Pf5aeikLyH2ZHIVqrthD7bXFBwGJlhFhoVioJ31PyeOZG5Ip2jYyCUaAcSVcNIniOtkSoH45U2pbB02uXbExNED2W08 -Requires: libGLEW.so.1.13()(64bit) >= set:pjTPEI7u86tTfeffYoNS68ktMZkgsWKSFLPKgHEYdmv8QivwpMavv3ySNzzEDZ1Q3CxEaDHCh8K4VaZ5wtf44lKlCzbzHiIWPtcMBsku98V7IOHVTzqQwep9hXlitweaRfqFvap1hAZ0wHWzZDIx6UVYRZAIrldvZJ40PpDDepsgts2 +Requires: libGLEW.so.2.0()(64bit) >= set:pjTPEI7u86tTfeffYoNS68ktMZkgsWKSFLPKgHEYdmv8QivwpMavv3ySNzzEDZ1Q3CxEaDHCh8K4VaZ5wtf44lKlCzbzHiIWPtcMBsku98V7IOHVTzqQwep9hXlitweaRfqFvap1hAZ0wHWzZDIx6UVYRZAIrldvZJ40PpDDepsgts2 Requires: libGLU.so.1()(64bit) >= set:jhZbTkQ1 @@ -722,3 +722,3 @@ Requires: libc.so.6(GLIBC_2.7)(64bit) -Requires: libfreetype.so.6()(64bit) >= set:mi6G3QYmY0h9SBLTfF2RUvsN6iHa +Requires: libfreetype.so.6()(64bit) >= set:lhcEBwdAEvqYfVSRnZ8QGCkI4X2 Requires: libgcc_s.so.1(GCC_3.0)(64bit) --- python-module-pymol-debuginfo-1.7.2.1-alt2.svn20140819.qa1.x86_64.rpm.repo 2016-04-06 23:06:43.000000000 +0000 +++ python-module-pymol-debuginfo-1.7.2.1-alt2.svn20140819.qa1.x86_64.rpm.hasher 2019-04-14 03:27:50.514517099 +0000 @@ -348,3 +348,3 @@ Requires: debug64(libGL.so.1) -Requires: debug64(libGLEW.so.1.13) +Requires: debug64(libGLEW.so.2.0) Requires: debug64(libGLU.so.1)